From 7717c0e7401e344a6bce37a4f8ecc11399256936 Mon Sep 17 00:00:00 2001
From: DavidNew-NOAA <134300700+DavidNew-NOAA@users.noreply.github.com>
Date: Wed, 9 Oct 2024 15:30:45 -0400
Subject: [PATCH] JCB-based obs+bias staging (#31)

This PR is a companion to Global Workflow PR
[#2992](https://github.com/NOAA-EMC/global-workflow/pull/2992) and
GDASApp PR [#1312](https://github.com/NOAA-EMC/GDASApp/pull/1312).

It add observation and bias files staging templates required for the
above Global Workflow PR.
---
 algorithm/atmosphere/atm_bias_staging.yaml.j2 | 10 ++++++++++
 algorithm/atmosphere/atm_obs_staging.yaml.j2  |  8 ++++++++
 2 files changed, 18 insertions(+)
 create mode 100644 algorithm/atmosphere/atm_bias_staging.yaml.j2
 create mode 100644 algorithm/atmosphere/atm_obs_staging.yaml.j2

diff --git a/algorithm/atmosphere/atm_bias_staging.yaml.j2 b/algorithm/atmosphere/atm_bias_staging.yaml.j2
new file mode 100644
index 0000000..c91ea2e
--- /dev/null
+++ b/algorithm/atmosphere/atm_bias_staging.yaml.j2
@@ -0,0 +1,10 @@
+mkdir:
+    - '{{atmosphere_obsbiasout_path}}'
+copy:
+    {% for observation_from_jcb in observations %}
+    {% if use_observer(observation_from_jcb) %}
+    {% if observation_from_jcb in bias_files %}
+    - ['{{atmosphere_obsbiasroot_path}}/{{atmosphere_obsbiasin_prefix}}{{bias_files[observation_from_jcb]}}', '{{atmosphere_obsbiasin_path}}']
+    {% endif %}
+    {% endif %}
+    {% endfor %}
diff --git a/algorithm/atmosphere/atm_obs_staging.yaml.j2 b/algorithm/atmosphere/atm_obs_staging.yaml.j2
new file mode 100644
index 0000000..34d0984
--- /dev/null
+++ b/algorithm/atmosphere/atm_obs_staging.yaml.j2
@@ -0,0 +1,8 @@
+mkdir:
+    - '{{atmosphere_obsdatain_path}}'
+copy:
+    {% for observation_from_jcb in observations %}
+    {% if use_observer(observation_from_jcb) %}
+    - ['{{atmosphere_obsdataroot_path}}/{{atmosphere_obsdatain_prefix}}{{observation_from_jcb}}{{atmosphere_obsdatain_suffix}}', '{{atmosphere_obsdatain_path}}']
+    {% endif %}
+    {% endfor %}