get-gtest-codecov.yml

# Get GoogleTest code coverage
name: get-gtest-codecov
# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
on:
  workflow_dispatch:
  push:
    branches:    
      - main
    paths-ignore:
      - .devcontainer
      - .github
      - 'LICENSE'
      - 'README.md'
      - 'CONTRIBUTING.md'
      - 'Rbuildignore'
      - '.gitignore'
      - 'man'
  pull_request:
    branches:
      - main

jobs:
  build:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
    - uses: actions/checkout@v3
    - name: Install Ninja
      run: sudo apt-get install ninja-build
    - uses: r-lib/actions/setup-r@v2
    - uses: r-lib/actions/setup-r-dependencies@v2
      with:
        extra-packages: any::remotes
    - name: install local version of FIMS
      run: remotes::install_local(upgrade= "always", force = TRUE)
      shell: Rscript {0}
    - name: setup for gtest
      run: FIMS:::setup_gtest()
      shell: Rscript {0}
     #note: the following configure, build and test steps could instead
     # be run from r using FIMS::setup_and_run_gtest()
    - name: Configure
    # Do not run -DBUILD_DOC=OFF locally. Only run cmake -S . -B build -G Ninja locally.
      run: |
        cmake -S . -B build -DBUILD_DOC=OFF -G Ninja 
        
    - name: Build
      run: |  
        cmake --build build --parallel 16
        
    - name: Test
      run: |
        ctest --test-dir build --parallel 16
    
    - name: Install gcovr
      run: |
        pip install gcovr

    - name: Run gcovr 
      run: |  
        gcovr --exclude tests/ --cobertura coverage.xml

    - name: save coverage report
      uses: actions/upload-artifact@v3
      with:
        name: coverage.xml
        path: coverage.xml

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        files: coverage.xml