style: run clang format (#490)

Co-authored-by: Andrea-Havron-NOAA <Andrea-Havron-NOAA@users.noreply.github.com>
NOAA-FIMS · Oct 24, 2023 · eb1f2d6 · eb1f2d6
1 parent 44c4716
commit eb1f2d6
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Showing 2 changed files with 17 additions and 13 deletions.
diff --git a/inst/include/population_dynamics/population/population.hpp b/inst/include/population_dynamics/population/population.hpp
@@ -233,8 +233,9 @@ struct Population : public FIMSObject<Type> {
   inline void CalculateNumbersAA(size_t i_age_year, size_t i_agem1_yearm1,
                                  size_t age) {
     // using Z from previous age/year
-    this->numbers_at_age[i_age_year] = this->numbers_at_age[i_agem1_yearm1] *
-                                     (fims::exp(-this->mortality_Z[i_agem1_yearm1]));
+    this->numbers_at_age[i_age_year] =
+        this->numbers_at_age[i_agem1_yearm1] *
+        (fims::exp(-this->mortality_Z[i_agem1_yearm1]));
     FIMS_LOG << " z at i_agem1_yearm1 = " << i_agem1_yearm1 << " is "
              << this->mortality_Z[i_agem1_yearm1] << std::endl;
     // Plus group calculation
@@ -253,8 +254,8 @@ struct Population : public FIMSObject<Type> {
    * @param i_agem1_yearm1 dimension folded index for age-1 and year-1
    * @param age age index
    */
-  inline void CalculateUnfishedNumbersAA(size_t i_age_year, size_t i_agem1_yearm1,
-                                         size_t age) {
+  inline void CalculateUnfishedNumbersAA(size_t i_age_year,
+                                         size_t i_agem1_yearm1, size_t age) {
     // using M from previous age/year
     this->unfished_numbers_at_age[i_age_year] =
         this->unfished_numbers_at_age[i_agem1_yearm1] *
@@ -306,9 +307,10 @@ struct Population : public FIMSObject<Type> {
    * @param age the age who's biomass is being added into total spawning biomass
    */
   void CalculateSpawningBiomass(size_t i_age_year, size_t year, size_t age) {
-    this->spawning_biomass[year] +=
-        this->proportion_female * this->numbers_at_age[i_age_year] *
-        this->proportion_mature_at_age[i_age_year] * growth->evaluate(ages[age]);
+    this->spawning_biomass[year] += this->proportion_female *
+                                    this->numbers_at_age[i_age_year] *
+                                    this->proportion_mature_at_age[i_age_year] *
+                                    growth->evaluate(ages[age]);
     FIMS_LOG << " proportion female " << this->proportion_female << " "
              << " mature age " << age << " is "
              << this->proportion_mature_at_age[i_age_year] << " "
@@ -462,7 +464,8 @@ struct Population : public FIMSObject<Type> {
       if (this->fleets[fleet_]->is_survey == false) {
         catch_ = (this->fleets[fleet_]->Fmort[year] *
                   this->fleets[fleet_]->selectivity->evaluate(ages[age])) /
-                 this->mortality_Z[i_age_year] * this->numbers_at_age[i_age_year] *
+                 this->mortality_Z[i_age_year] *
+                 this->numbers_at_age[i_age_year] *
                  (1 - fims::exp(-(this->mortality_Z[i_age_year])));
       } else {
         catch_ = (this->fleets[fleet_]->selectivity->evaluate(ages[age])) *
@@ -622,7 +625,8 @@ struct Population : public FIMSObject<Type> {
            Expected recruitment in year 0 is numbers at age 0 in year 0.
            */
 
-          this->expected_recruitment[i_age_year] = this->numbers_at_age[i_age_year];
+          this->expected_recruitment[i_age_year] =
+              this->numbers_at_age[i_age_year];
 
         } else {
           if (a == 0) {

diff --git a/inst/include/population_dynamics/selectivity/functors/double_logistic.hpp b/inst/include/population_dynamics/selectivity/functors/double_logistic.hpp
@@ -23,14 +23,14 @@ struct DoubleLogisticSelectivity : public SelectivityBase<Type> {
                 (x)  on the ascending limb of the double logistic curve; e.g. age
                 at  which 50% of the fish are selected */
   Type slope_asc;   /*!<scalar multiplier of difference between quantity of
-                interest   value (x) and median on the ascending limb of the double
-                logistic   curve*/
+                interest   value (x) and median on the ascending limb of the
+                double   logistic   curve*/
   Type median_desc; /*!< 50% quantile of the value of the quantity of interest
                (x) on the descending limb of the double logistic curve; e.g.
                age at which 50% of the fish are selected */
   Type slope_desc;  /*!<scalar multiplier of difference between quantity of
-               interest  value (x) and median on the descending limb of the double
-               logistic  curve */
+               interest  value (x) and median on the descending limb of the
+               double  logistic  curve */
 
   DoubleLogisticSelectivity() : SelectivityBase<Type>() {}