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Fims vector #517

Merged
merged 66 commits into from
Dec 13, 2023
Merged

Fims vector #517

merged 66 commits into from
Dec 13, 2023

Commits on Nov 7, 2023

  1. added fims vector

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  2. updates

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  3. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  4. fully wrapped std::vector

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  5. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  6. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  7. added fims::Vector to population.

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  8. use new fims::vector for fleet agecomp nll

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 7, 2023
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  9. add constructor for fims_vector

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 7, 2023
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  10. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  11. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  12. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  13. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  14. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  15. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  16. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  17. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  18. Update fims_vector.hpp

    @msupernaw @ChristineStawitz-NOAA
    msupernaw authored and ChristineStawitz-NOAA committed Nov 7, 2023
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  19. resolve merge conflict errors

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. remove parametervector calls in fleet and pop

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 8, 2023
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  2. use fims::Vector<Type> for recruitment deviations

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 8, 2023
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  3. remove ParameterVector from modeltraits

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 8, 2023
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  4. remove unecessary using call

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 8, 2023
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  5. fix recruitment tests

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 8, 2023
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  6. Added documentation.

    @msupernaw
    msupernaw committed Nov 8, 2023
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  7. Update fims_vector.hpp

    @msupernaw
    msupernaw committed Nov 8, 2023
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  8. Update fims_vector.hpp

    @msupernaw
    msupernaw committed Nov 8, 2023
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  9. Update model.hpp

    @msupernaw
    msupernaw committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. update fims::Vector to work with TMB dmultinorm

    @msupernaw
    msupernaw committed Nov 9, 2023
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  2. Remove references to ModelTraits and delete

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 9, 2023
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  3. remove tmbutils:: and replace int with size_t

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 9, 2023
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Commits on Nov 15, 2023

  1. Merge branch 'main' into fims_vector

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 15, 2023
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  2. fix merge cnflicts

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 15, 2023
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  3. another merge conflict

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 15, 2023
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Commits on Nov 16, 2023

  1. add log to documentation on recdevs

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 16, 2023
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  2. add 0 to end of recdevs

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 16, 2023
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  3. remove prop_female

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 16, 2023
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  4. resize recdev vector

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 16, 2023
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Commits on Nov 17, 2023

  1. special case last year of recdevs

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 17, 2023
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  2. fix comparison

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 17, 2023
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  3. removes devtools

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 17, 2023
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  4. Merge branch 'main' into fims_vector

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    ChristineStawitz-NOAA committed Nov 17, 2023
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Commits on Nov 24, 2023

  1. Merge branch 'main' into fims_vector

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 24, 2023
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  2. replace fims::Vector with vector<Type> in tmbdist

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 24, 2023
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Commits on Nov 27, 2023

  1. change x to integervector and remove Rcpp warning

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 27, 2023
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  2. fix gradient warning

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 27, 2023
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Commits on Nov 28, 2023

  1. Merge branch 'main' into fims_vector

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Nov 28, 2023
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Commits on Nov 29, 2023

  1. fix fims::Vector to tmbutils::vector conversion

    @Andrea-Havron-NOAA
    Andrea-Havron-NOAA committed Nov 29, 2023
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Commits on Nov 30, 2023

  1. add documentation

    @Andrea-Havron-NOAA
    Andrea-Havron-NOAA committed Nov 30, 2023
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Commits on Dec 4, 2023

  1. Update fims_vector.hpp 

    Added description to friend operator.
    @msupernaw
    msupernaw committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. Update integration_class.hpp 

    recruit devs check
    @msupernaw
    msupernaw committed Dec 5, 2023
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  2. Update fims_vector.hpp

    @msupernaw
    msupernaw committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Update rcpp_tmb_distribution.hpp

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    msupernaw committed Dec 6, 2023
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Commits on Dec 7, 2023

  1. Update fims_vector.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  2. Update fims_vector.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  3. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  4. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  5. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  6. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  7. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  8. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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  9. Update integration_class.hpp

    @msupernaw
    msupernaw committed Dec 7, 2023
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Commits on Dec 12, 2023

  1. cleanup of commented code and dox

    @ChristineStawitz-NOAA
    ChristineStawitz-NOAA committed Dec 12, 2023
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  2. make log_obs_error a vector

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    ChristineStawitz-NOAA committed Dec 12, 2023
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  3. make log_obs_error a vector (#532)

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    ChristineStawitz-NOAA committed Dec 12, 2023
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  4. remove begin() and end() for const iterator

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    ChristineStawitz-NOAA committed Dec 12, 2023
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