diff --git a/.gitignore b/.gitignore
index 1429b911..bba16f49 100644
--- a/.gitignore
+++ b/.gitignore
@@ -38,6 +38,7 @@ coverage.xml
 *.cover
 .hypothesis/
 .pytest_cache/
+pytest.ini
 
 # Sphinx documentation
 docs/_build/
@@ -61,6 +62,3 @@ tags
 webapp/npapp/static/css/bokeh*.css
 webapp/npapp/static/js/bokeh*.js
 src/nplinker/scoring/iokr/data/SPEC/
-
-tests/data/ProteoSAFe-METABOLOMICS-SNETS-c22f44b1-download_clustered_spectra
-tests/data/ProteoSAFe-FEATURE-BASED-MOLECULAR-NETWORKING-92036537-download_cytoscape_data