diff --git a/tests/unit/class_info/test_chem_classes.py b/tests/unit/class_info/test_chem_classes.py deleted file mode 100644 index 56063961..00000000 --- a/tests/unit/class_info/test_chem_classes.py +++ /dev/null @@ -1,53 +0,0 @@ -import unittest -from nplinker.class_info.chem_classes import MolNetEnhancerResults -from .. import DATA_DIR - - -# TODO: No such file or directory: 'canopus.tsv' -# class TestCanopusResults(unittest.TestCase): -# def setUp(self): -# canopus_test_dir = os.path.join(Path(__file__).parent, "data") -# can_res = CanopusResults(canopus_test_dir, 'gnps_test_data') -# self._cr = can_res - -# def test_running(self): -# for i, elem in enumerate([ -# self._cr.spectra_classes, self._cr.spectra_classes_names, -# self._cr.spectra_classes_names_inds, self._cr.mf_classes, -# self._cr.mf_classes_names, -# self._cr.mf_classes_names_inds]): -# self.assertTrue(len(elem) != 0, f"Element {i} failed to load") - -# def test_can_treemap(self): -# # todo -# pass - - -class TestMolNetEnhancerResults(unittest.TestCase): - def setUp(self): - # ./data/ClassyFireResults_Network.txt is required - mne_res = MolNetEnhancerResults(DATA_DIR) - self._mr = mne_res - - def test_running(self): - for i, elem in enumerate( - [ - self._mr.spectra2mf, - self._mr.spectra_classes_names, - self._mr.spectra_classes_names_inds, - self._mr.mf_classes, - ] - ): - self.assertTrue(len(elem) != 0, f"Element {i} failed to load") - - test_spec_classes = self._mr.spectra_classes("130522") - self.assertTrue(len(test_spec_classes) != 0, "func spectra_classes() not working") - self.assertTrue( - self._mr.spectra_classes("31") is None, - "handling 'no matches' goes wrong, MFs/spectra without" - " classes end up in mne results", - ) - - -if __name__ == "__main__": - unittest.main()