Dockerfile

# from: https://github.com/GenomicParisCentre/dockerfiles/blob/master/fastqc/fastqc-0.11.5/Dockerfile
############################################################
# Dockerfile to build FASTQC container images
# Based on Ubuntu
############################################################

# Set the base image to Ubuntu
FROM ubuntu:14.04

# File Author / Maintainer
MAINTAINER Laurent Jourdren <jourdren@biologie.ens.fr>

# Install OpenJDK 7 JRE
RUN apt-get update && apt-get install --yes \
    openjdk-7-jre \
    perl \
    unzip

# Download FastQC
ADD http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip /tmp/

# Install FastQC
RUN cd /usr/local && \
    unzip /tmp/fastqc_*.zip && \
    chmod 755 /usr/local/FastQC/fastqc && \
    ln -s /usr/local/FastQC/fastqc /usr/local/bin/fastqc && \
    rm -rf /tmp/fastqc_*.zip

ENTRYPOINT ["fastqc"]