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.gitignore
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.gitignore
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# History files
.Rhistory
.Rapp.history
# Session Data files
.RData
# User-specific files
.Ruserdata
# Example code in package build process
*-Ex.R
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# RStudio files
.Rproj.user/
# produced vignettes
vignettes/*.html
vignettes/*.pdf
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# knitr and R markdown default cache directories
*_cache/
/cache/
# Temporary files created by R markdown
*.utf8.md
*.knit.md
.Rproj.user
*.Rproj
# For development only:
dev_environment.yml
# Generated files, etc.
/D_Keen_MSC/
/_exploratory/
/scripts/_unused/
/data/iucn_range_maps/MAMMALS_*
/data/iucn_range_maps/*.pdf
/data/external/*
/data/calculated/*
/output/
# Need these files for reproducibility, since the online sources may change:
# - Any sequences removed/updated in future won't be retreivable from
# entrez (e.g. XP_023104564.1)
# - Taxonomy changes will impact of range of downstream steps
!/data/external/ace2_protein_sequences.fasta
!/data/calculated/taxonomy.rds