diff --git a/central_processing.py b/central_processing.py index 8df005b..8bbf57b 100755 --- a/central_processing.py +++ b/central_processing.py @@ -73,10 +73,10 @@ def preprocess( return data except (NameError, ValueError, TypeError, AttributeError, RuntimeError) as e: msg = f'I failed preprocessing the image with error: {e}' - logger.exception(msg) + logger.error(msg) except Exception as e: msg = f'I failed preprocessing the image. Unexpected exception: type={type(e)}, e:{e}' - logger.exception(msg) + logger.error(msg) @timer def predict_step(self, data: np.ndarray, model: config.ModelInput) -> np.ndarray: @@ -112,10 +112,10 @@ def predict_step(self, data: np.ndarray, model: config.ModelInput) -> np.ndarray RuntimeError, ) as e: msg = f'I failed predicting the image with error: {e}' - logger.exception(msg) + logger.error(msg) except Exception as e: msg = f'I failed predicting the image. Unexpected exception: type={type(e)}, e:{e}' - logger.exception(msg) + logger.error(msg) @timer def postprocess( @@ -159,7 +159,7 @@ def postprocess( RuntimeError, ) as e: msg = f'I failed postprocessing with error {e}' - logger.exception(msg) + logger.error(msg) except Exception as e: msg = f'I failed postprocessing the image. Unexpected exception: type={type(e)}, e:{e}' - logger.exception(msg) + logger.error(msg) diff --git a/data_download.py b/data_download.py index 90cdb1b..f74b36e 100755 --- a/data_download.py +++ b/data_download.py @@ -75,7 +75,7 @@ def download_data( f.create_dataset(key, data=value) except ValueError: - logger.exception('Error while downloading data from MedQuery') + logger.error('Error while downloading data from MedQuery') def hdf5_to_nifti_all(self, hdf5_path: str, output_dir: str) -> NoReturn: """Convert hdf5 file to nifti file. @@ -110,7 +110,7 @@ def hdf5_to_nifti_all(self, hdf5_path: str, output_dir: str) -> NoReturn: img = nib.Nifti1Image(data, affine) nib.save(img, os.path.join(output_dir, f'{series_uid}.nii.gz')) except IndexError: - logger.exception('Error with hdf5 indexing') + logger.error('Error with hdf5 indexing') def hdf5_to_nifti_single( self, hdf5_path: str, output_dir: str, series_uid: str diff --git a/neotemplate/base_central_processing.py b/neotemplate/base_central_processing.py index d4cdd65..45f53a2 100644 --- a/neotemplate/base_central_processing.py +++ b/neotemplate/base_central_processing.py @@ -143,7 +143,7 @@ def preprocess(self, data: np.ndarray, extras: Optional[Dict[str, Any]] = {}) -> try: raise NotImplementedError except Exception: - logger.exception('preproccessing failed') + logger.error('preproccessing failed') def predict_step(self, data: np.ndarray) -> np.ndarray: """ @@ -163,7 +163,7 @@ def predict_step(self, data: np.ndarray) -> np.ndarray: try: raise NotImplementedError except Exception: - logger.exception('predict_step failed') + logger.error('predict_step failed') def check_version(self): try: