From bffa236e3b0d0888419b36d0b89cadcfe05cdea9 Mon Sep 17 00:00:00 2001 From: Steffen Bollmann Date: Wed, 30 Oct 2024 16:16:52 +1000 Subject: [PATCH] update vesselboost and defacing pipeline --- recipes/defacing/OpenReconLabel.json | 6 +++--- recipes/defacing/README.md | 2 +- recipes/defacing/params.sh | 4 ++-- recipes/vesselboost/OpenReconLabel.json | 6 +++--- recipes/vesselboost/README.md | 2 +- recipes/vesselboost/params.sh | 4 ++-- 6 files changed, 12 insertions(+), 12 deletions(-) diff --git a/recipes/defacing/OpenReconLabel.json b/recipes/defacing/OpenReconLabel.json index fd7103d..7e0e393 100644 --- a/recipes/defacing/OpenReconLabel.json +++ b/recipes/defacing/OpenReconLabel.json @@ -1,13 +1,13 @@ { "general": { "name": { "en": "defacing" }, - "version": "1.0.0", + "version": "2.0.0", "vendor": "neurodesk", - "information": { "en": "Defacing pipeline." }, + "information": { "en": "Defacing pipeline with synthstrip and quickshear." }, "id": "defacing", "regulatory_information": { "device_trade_name":"defacing", - "production_identifier":"1.0.0", + "production_identifier":"2.0.0", "manufacturer_address":"Erlangen, Germany", "made_in":"DE", "manufacture_date":"2023/02/14", diff --git a/recipes/defacing/README.md b/recipes/defacing/README.md index 9c4ddb8..4c7daf9 100644 --- a/recipes/defacing/README.md +++ b/recipes/defacing/README.md @@ -1 +1 @@ -Readme will be converted to PDF \ No newline at end of file +This pipeline will run a defacing algorithm consisting of Synthstrip and Quickshear \ No newline at end of file diff --git a/recipes/defacing/params.sh b/recipes/defacing/params.sh index 42e2335..ff2b88b 100644 --- a/recipes/defacing/params.sh +++ b/recipes/defacing/params.sh @@ -1,2 +1,2 @@ -# specify the repostiory and name of the docker image -export baseDockerImage=stebo85/bet4 \ No newline at end of file +# specify the repostiory and name of the docker image: https://hub.docker.com/orgs/vnmd/repositories +export baseDockerImage=vnmd/quickshear_1.1.0 \ No newline at end of file diff --git a/recipes/vesselboost/OpenReconLabel.json b/recipes/vesselboost/OpenReconLabel.json index 07a2a0f..71329ae 100644 --- a/recipes/vesselboost/OpenReconLabel.json +++ b/recipes/vesselboost/OpenReconLabel.json @@ -1,17 +1,17 @@ { "general": { "name": { "en": "vesselboost" }, - "version": "1.0.1", + "version": "1.0.2", "vendor": "neurodesk", "information": { "en": "Vesselboost pipeline." }, "id": "vesselboost", "regulatory_information": { "device_trade_name":"vesselboost", - "production_identifier":"1.0.1", + "production_identifier":"1.0.2", "manufacturer_address":"Erlangen, Germany", "made_in":"DE", "manufacture_date":"2023/02/14", - "material_number":"vesselboost_1.0.1", + "material_number":"vesselboost_1.0.2", "gtin":"00860000171212", "udi":"(01)00860000171212(21)1.3.0", "safety_advices":"", diff --git a/recipes/vesselboost/README.md b/recipes/vesselboost/README.md index fb7631e..0cd99a1 100644 --- a/recipes/vesselboost/README.md +++ b/recipes/vesselboost/README.md @@ -1 +1 @@ -Vesselboost 1.0.1 will run a deep learning pipeline to segment an MRA TOF and output the segmentation. \ No newline at end of file +Vesselboost will run a deep learning pipeline to segment an MRA TOF and output the segmentation. \ No newline at end of file diff --git a/recipes/vesselboost/params.sh b/recipes/vesselboost/params.sh index 1ab0a3f..6d8d668 100644 --- a/recipes/vesselboost/params.sh +++ b/recipes/vesselboost/params.sh @@ -1,2 +1,2 @@ -# specify the repostiory and name of the docker image -export baseDockerImage=vnmd/vesselboost_1.0.1 \ No newline at end of file +# specify the repostiory and name of the docker image: https://hub.docker.com/orgs/vnmd/repositories +export baseDockerImage=vnmd/vesselboost_1.0.2 \ No newline at end of file