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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1.0,user-scalable=no">
<meta property='og:type' content='website'>
<meta property='og:title' content='Isotope Calculation Gadgets'>
<meta property='og:url' content='https://nobuyukiokahashi.github.io/github.io-Isotope_calc_gadgets_tutorial/'>
<meta property='og:description' content='Isotope Calculation Gadgets'>
<meta property="og:image" content="img/ogp.png">
<meta name="description" content="Isotope Calculation Gadgets" />
<title>Isotope Calculation Gadgets</title>
<link rel="preconnect" href="https://fonts.gstatic.com">
<link href="https://fonts.googleapis.com/css2?family=Montserrat:wght@400;700&display=swap" rel="stylesheet">
<link href="https://fonts.googleapis.com/css?family=Material+Icons+Outlined" rel="stylesheet">
<link href="css/ress.css" media="all" rel="stylesheet" type="text/css" />
<link href="css/style.css" media="all" rel="stylesheet" type="text/css" />
<link rel="shortcut icon" href="img/favicon.ico" />
<link rel=”canonical” href=”https://nobuyukiokahashi.github.io/github.io-Isotope_calc_gadgets_tutorial/” />
</head>
<body>
<div class="wrapper">
<!-- header -->
<header class="header ">
<div class="inner">
<h1 class="header-logo">
<a href=".">Isotope Calculation Gadgets</a>
</h1>
<nav class="header-nav">
<ul class="header-nav-list">
<li class="header-nav-item"><a href="#About">About</a></li>
<li class="header-nav-item"><a href="#Overview">Overview</a></li>
<li class="header-nav-item"><a href="#Imprementation">Imprementation</a></li>
<li class="header-nav-item"><a href="#Gadgets">How to use</a></li>
<li class="header-nav-item"><a href="#Contact">Contact</a></li>
</ul>
</nav>
</div>
</header>
<!-- /header -->
<main class="content">
<!-- main-visual -->
<div class="main-visual">
<div class="main-visual-inner">
<p class="main-visual-title">Isotope Calculation Gadgets</p>
<p class="main-visual-subtitle">Tutorial</p>
<p class="main-visual-text">
Making isotope tracing experiments more convenient.
</p>
</div>
</div>
<!-- /main-visual -->
<!-- About -->
<section class="about section" id="About">
<div class="inner">
<h2 class="title">About</h2>
<div class="profile">
<p class=profile-body>
"Isotope Calculation Gadgets" are programs that assists data processing for stable isotope tracing experiments. These programs run on the open platform <a href="http://www.garuda-alliance.org/about.html"> "Garuda"</a>.
</p>
</div>
</div>
</section>
<!-- /About -->
<!-- Overview -->
<section class="about section" id="Overview">
<div class="inner">
<h2 class="title">Overview</h2>
<div class="profile">
<p class=profile-body>
Before isotope tracing experiments, an analysis method must be developed. "Isotope Channel Generator" is a gadget supporting the method development.
</p>
<img src="img/Overview_before.png">
<p class=profile-body>
Obtained raw data can be processed by "Natural Isotope Subtractor", which subtract the effect of natural isotopes.
The processed data is also analyzed and mapped by other gadgets.
</p>
<img src="img/Overview_after.png">
<img src="img/output.png">
</div>
</div>
</section>
<!-- /Overview -->
<!-- Imprementation -->
<section class="about section" id="Imprementation">
<div class="inner">
<h2 class="title">Imprementation</h2>
<div class="profile">
<div class="profile-body">
<p>
<b>Step 1</b> Download and install<a href="http://www.garuda-alliance.org/Community-Installers/GarudaCommunity1.4Pack-Win.zip"> Garuda Platform 1.4 beta Pack</a>. Learn <a href="http://www.garuda-alliance.org/gettingstarted.html">more</a>.
<p>
[Caution!] Please use Firefox for web browser".
</p>
</p>
<p>
<b>Step 2</b> Download and install<a href="https://www.anaconda.com/products/individual-b"> Python 3.X (Anaconda 4.X.X)</a>.
</p>
<p>
[Caution!] In the advanced options settings, check the checkbox of "Add Anaconda 3 to my PATH environment variable".
</p>
<p>
[Caution!] Reboot your computer before procecding to next step.
</p>
<p>
<b>Step 3</b> Download and install<a href="http://garuda-alliance.org/GarudaCommunity/gadgets-main.jsp#gadgets_sections"> Isotope Calculation Gadgets</a>.
</p>
<p>
<b>Step 4</b> (Optional) For data mapping, download and install <a href="http://www.garuda-alliance.org/gadgetpack/shimadzu/doc/ShimadzuMultiOmicsGadgetPack.zip">cooperation gadgets</a> following <a href="http://www.garuda-alliance.org/gadgetpack/shimadzu/doc/How_to_install_Gadgets.pdf">instracution</a>. Learn <a href="http://www.garuda-alliance.org/gadgetpack/shimadzu/">more</a>.
</p>
<p>
[Caution!] Please use Firefox for web browser".
</p>
</div>
</div>
</div>
</section>
<!-- /Imprementation -->
<!-- Gadgets -->
<section class="works section" id="Gadgets">
<div class="inner2">
<h2 class="title">How to use</h2>
<div class="works-list">
<a class="works-item" href="Isotope_Channel_Generator.html">
<p class="noborder"><img src="img/Isotope_channel_generator.png"></p>
<p class="works-name">Isotope Channel Generator</p>
</a>
<a class="works-item" href="Natural_Isotope_Subtractor.html">
<p class="noborder"><img src="img/Natural_isotope_subtractor.png"></p>
<p class="works-name">Natural Isotope Subtractor</p>
</a>
<a class="works-item" href="Average_Labeling_Calculator.html">
<p class="noborder"><img src="img/Average_labeling_calculator.png"></p>
<p class="works-name">Average Labeling Calculator</p>
</a>
<a class="works-item" href="Split_Ratio_Calculator.html">
<p class="noborder"><img src="img/Split_ratio_calculator.png"></p>
<p class="works-name">Split Ratio Calculator</p>
</a>
<li class="works-item">
<p class="noborder"><img src="img/coming_soon.png"></p>
<p class="works-name">Coming soon...</p>
</li>
<li class="works-item">
<p class="noborder"><img src="img/coming_soon.png"></p>
<p class="works-name">Coming soon...</p>
</li>
</div>
<div class="profile-body2">
<p>
See <a href="mapping.html">here</a> for <b>data mapping</b>.
</p>
</div>
</div>
</section>
<!-- /Gadgets -->
<!-- contact -->
<section class="contact section" id="Contact">
<div class="inner">
<h2 class="title">Contact</h2>
<p class="lead">
Developer: Nobuyuki Okahashi (Ph.D)
</p>
<p>
<a class="contact-item" href="https://orcid.org/my-orcid?orcid=0000-0001-9582-355X" target="_blank" rel="noopener">ORCID</a>
</p>
<p>
Associate Professor
</p>
<p>
Graduate School of Information Science and Technology, Osaka University
</p>
<div class="contact-list">
<a class="contact-item" href="http://www-symbio.ist.osaka-u.ac.jp/index-e.html" target="_blank" rel="noopener">Lab webpage</a>
<p>e-mail: n-okahashi[at]ist.osaka-u.ac.jp</p>
</div>
</div>
</section>
<!-- /contact -->
<div class="page-top" id="js-page-top">
<span class="material-icons-outlined">expand_less</span>
</div>
</main>
<!-- footer -->
<footer class="footer">
<div class="copyright">©Nobuyuki Okahashi</div>
</footer>
<!-- /footer -->
</div>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.5.1/jquery.min.js"></script>
<script type='text/javascript' src="js/script.js"></script>
</body>
</html>