CyteType/pyproject.toml at master · NygenAnalytics/CyteType · GitHub

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[project]
name = "cytetype"
dynamic = ["version"]
description = "Python client for characterization of clusters from single-cell RNA-seq data."
readme = "README.md"
requires-python = ">=3.12"
dependencies = [
    "anndata~=0.12.10",
    "loguru~=0.7.3",
    "natsort~=8.4.0",
    "requests~=2.32.5",
    "pydantic~=2.12.5",
    "session-info~=1.0.1",
    "python-dotenv~=1.2.1",
    "duckdb>=1.4.4",
    "hdf5plugin>=6.0.0",
]
authors = [
    {name = "Parashar Dhapola", email = "parashar@nygen.io"}
]
license = {text = "CC BY-NC-SA 4.0"}
keywords = ["bioinformatics", "single-cell", "RNA-seq", "annotation", "cell types"]

[project.urls]
Homepage = "https://github.com/NygenAnalytics/cytetype"
Issues = "https://github.com/NygenAnalytics/cytetype/issues"
Repository = "https://github.com/NygenAnalytics/cytetype"

[dependency-groups]
dev = [
    "jupyterlab~=4.5.4",
    "mypy~=1.19.1",
    "pytest~=9.0.2",
    "ruff~=0.14.11",
    "scanpy~=1.12",
    "igraph~=1.0.0",
    "leidenalg~=0.11.0",
    "types-requests~=2.32.4.20260107",
    "pytest-cov>=7.0.0",
]

[build-system]
requires = ["setuptools>=80.9.0", "wheel"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
packages = {find = {}}

[tool.setuptools.dynamic]
version = {attr = "cytetype.__version__"}

[tool.mypy]
strict = false

python_version = "3.12"

disable_error_code = ["import-untyped"]

disallow_untyped_defs = true
disallow_incomplete_defs = true

check_untyped_defs = true
disallow_untyped_calls = true
no_implicit_optional = true

warn_return_any = true
warn_unused_configs = true
warn_redundant_casts = true
warn_unused_ignores = true

ignore_missing_imports = false

exclude = ["^build/", "^dist/", "^.*\\.egg-info/"]