From 718e37187b3064e807cf75a3a3514140061208bc Mon Sep 17 00:00:00 2001
From: Mark Cianciosa <cianciosamr@ornl.gov>
Date: Wed, 16 Oct 2024 16:21:36 -0400
Subject: [PATCH] Delete html directory

Move html generation to docs
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-<tr id="row_4_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_4_" class="arrow" onclick="toggleFolder('4_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__commandline__parser.html" target="_self">bmw_commandline_parser</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> </td></tr>
-<tr id="row_4_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html" target="_self">bmw_commandline_parser_class</a></td><td class="desc">Base class containing a parsed bmw_commandline </td></tr>
-<tr id="row_5_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_5_" class="arrow" onclick="toggleFolder('5_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__context.html" target="_self">bmw_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>. This contains the state variables needed by BMW </td></tr>
-<tr id="row_5_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__context_1_1bmw__context__class.html" target="_self">bmw_context_class</a></td><td class="desc">Base class representing a bmw context. This contains all memory needed to operate bmw </td></tr>
-<tr id="row_6_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_6_" class="arrow" onclick="toggleFolder('6_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__parallel__context.html" target="_self">bmw_parallel_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>. This contains the state variables needed by BMW for parallel computation </td></tr>
-<tr id="row_6_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html" target="_self">bmw_parallel_context_class</a></td><td class="desc">Base class representing a bmw parallel context. This contains all memory needed parameters needed to parallel processing </td></tr>
-<tr id="row_7_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_7_" class="arrow" onclick="toggleFolder('7_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>boundary_t</b></td><td class="desc"></td></tr>
-<tr id="row_7_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structboundary__t_1_1boundary__desc.html" target="_self">boundary_desc</a></td><td class="desc"></td></tr>
-<tr id="row_8_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_8_" class="arrow" onclick="toggleFolder('8_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>bsc_t</b></td><td class="desc"></td></tr>
-<tr id="row_8_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__coil.html" target="_self">bsc_coil</a></td><td class="desc"></td></tr>
-<tr id="row_8_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__coilcoll.html" target="_self">bsc_coilcoll</a></td><td class="desc"></td></tr>
-<tr id="row_8_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__rs.html" target="_self">bsc_rs</a></td><td class="desc"></td></tr>
-<tr id="row_8_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_8_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__construct.html" target="_self">bsc_construct</a></td><td class="desc"></td></tr>
-<tr id="row_8_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__destroy.html" target="_self">bsc_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_8_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__rot__shift.html" target="_self">bsc_rot_shift</a></td><td class="desc"></td></tr>
-<tr id="row_8_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__a.html" target="_self">bsc_a</a></td><td class="desc"></td></tr>
-<tr id="row_8_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__b.html" target="_self">bsc_b</a></td><td class="desc"></td></tr>
-<tr id="row_8_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__fluxba.html" target="_self">bsc_fluxba</a></td><td class="desc"></td></tr>
-<tr id="row_9_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_9_" class="arrow" onclick="toggleFolder('9_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecombination.html" target="_self">combination</a></td><td class="desc">Defines the base class of the type <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> </td></tr>
-<tr id="row_9_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcombination_1_1combination__class.html" target="_self">combination_class</a></td><td class="desc">Base class representing a combination signal </td></tr>
-<tr id="row_10_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_10_" class="arrow" onclick="toggleFolder('10_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecompression.html" target="_self">compression</a></td><td class="desc">Defines the base class of the type <a class="el" href="structcompression_1_1compression__class.html">compression_class</a>. This class contains the code and buffers to hold compressed and uncompressed data. 2D matrix data is compressed using a singular value decomposition. See del-Castillo-Negrete et. al. doi:10.1016/j.jcp.2006.07.022 </td></tr>
-<tr id="row_10_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcompression_1_1compression__class.html" target="_self">compression_class</a></td><td class="desc">Base class containing buffers for compressed and uncompressed data </td></tr>
-<tr id="row_10_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcompression_1_1compression__pointer.html" target="_self">compression_pointer</a></td><td class="desc">Pointer to a compression object. Used for creating arrays of compression pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_10_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacecompression_1_1compression__construct.html" target="_self">compression_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> types using <a class="el" href="interfacecompression_1_1compression__construct.html#a761cfee279aa8c0a332f3e37788c89dd">compression_construct_new</a> or <a class="el" href="interfacecompression_1_1compression__construct.html#a58461e3b568b600b5caa425b944acf2a">compression_construct_netcdf</a> </td></tr>
-<tr id="row_11_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_11_" class="arrow" onclick="toggleFolder('11_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>cyl_flux</b></td><td class="desc"></td></tr>
-<tr id="row_11_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcyl__flux_1_1cyl__flux__context.html" target="_self">cyl_flux_context</a></td><td class="desc">Structure to house needed internal state for cyl2flux </td></tr>
-<tr id="row_12_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_12_" class="arrow" onclick="toggleFolder('12_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>diagnostic_cdf</b></td><td class="desc"></td></tr>
-<tr id="row_12_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__define.html" target="_self">diagnostic_cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_12_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__write.html" target="_self">diagnostic_cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_12_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__read.html" target="_self">diagnostic_cdf_read</a></td><td class="desc"></td></tr>
-<tr id="row_13_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_13_" class="arrow" onclick="toggleFolder('13_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacediagnostic__dot.html" target="_self">diagnostic_dot</a></td><td class="desc">Module for opening and reading a diagnostic dot file. The file format for these files are documented in <a class="el" href="diagnostic_dot_sec.html">Magnetic Diagnostic Dot File</a> </td></tr>
-<tr id="row_13_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html" target="_self">diagnostic_dot_coil</a></td><td class="desc">A single coil. A coil set is structured as a singly linked list </td></tr>
-<tr id="row_14_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_14_" class="arrow" onclick="toggleFolder('14_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>diagnostic_t</b></td><td class="desc"></td></tr>
-<tr id="row_14_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structdiagnostic__t_1_1diagnostic__desc.html" target="_self">diagnostic_desc</a></td><td class="desc"></td></tr>
-<tr id="row_14_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_14_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__construct.html" target="_self">diagnostic_construct</a></td><td class="desc"></td></tr>
-<tr id="row_14_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__destroy.html" target="_self">diagnostic_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_14_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__write.html" target="_self">diagnostic_write</a></td><td class="desc"></td></tr>
-<tr id="row_15_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_15_" class="arrow" onclick="toggleFolder('15_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceece.html" target="_self">ece</a></td><td class="desc">Defines the base class of the type <a class="el" href="structece_1_1ece__class.html">ece_class</a> </td></tr>
-<tr id="row_15_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structece_1_1ece__class.html" target="_self">ece_class</a></td><td class="desc">Base class representing an ECE signal </td></tr>
-<tr id="row_15_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structece_1_1ece__context.html" target="_self">ece_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_16_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_16_" class="arrow" onclick="toggleFolder('16_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceemission.html" target="_self">emission</a></td><td class="desc">Defines the base class of the type <a class="el" href="structemission_1_1emission__class.html">emission_class</a>. This contains the X-Ray emission as function of temperature and energy. This needs to still be multiplied by ne^2 </td></tr>
-<tr id="row_16_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structemission_1_1emission__class.html" target="_self">emission_class</a></td><td class="desc">Base class representing the soft x-ray emission function </td></tr>
-<tr id="row_16_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceemission_1_1emission__construct.html" target="_self">emission_construct</a></td><td class="desc"></td></tr>
-<tr id="row_17_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_17_" class="arrow" onclick="toggleFolder('17_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceequilibrium.html" target="_self">equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. Equilibrium is an abstract interface to the equilibrium solver. Every method is meant to be overwritten by a subclass method with a few exceptions. For instance a vacuum equilibrium could use the default return values for equilibrium_get_ne, equilibrium_get_te and equilibrium_get_sxrem methods </td></tr>
-<tr id="row_17_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structequilibrium_1_1equilibrium__class.html" target="_self">equilibrium_class</a></td><td class="desc">Base class representing a equilibrium </td></tr>
-<tr id="row_17_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceequilibrium_1_1equilibrium__construct.html" target="_self">equilibrium_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> types using equilibrium_construct_vmec, equilibrium_construct_vacuum or equilibrium_construct_siesta </td></tr>
-<tr id="row_18_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_18_" class="arrow" onclick="toggleFolder('18_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceextcurz.html" target="_self">extcurz</a></td><td class="desc">Represents a signal obtained by integrating around the magnetic field to get the current enclosed in the Z direction using Ampere's Law. Defines the base class of the type <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> </td></tr>
-<tr id="row_18_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structextcurz_1_1extcurz__class.html" target="_self">extcurz_class</a></td><td class="desc">Base class representing a external Z currents enclosed by an inegration loop </td></tr>
-<tr id="row_19_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_19_" class="arrow" onclick="toggleFolder('19_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>extcurz_t</b></td><td class="desc"></td></tr>
-<tr id="row_19_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structextcurz__t_1_1extcurz__desc.html" target="_self">extcurz_desc</a></td><td class="desc"></td></tr>
-<tr id="row_20_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_20_" class="arrow" onclick="toggleFolder('20_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_attrib</b></td><td class="desc"></td></tr>
-<tr id="row_20_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__attrib_1_1cdf__setatt.html" target="_self">cdf_setatt</a></td><td class="desc"></td></tr>
-<tr id="row_20_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__attrib_1_1cdf__getatt.html" target="_self">cdf_getatt</a></td><td class="desc"></td></tr>
-<tr id="row_21_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_21_" class="arrow" onclick="toggleFolder('21_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_genput</b></td><td class="desc"></td></tr>
-<tr id="row_21_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdf__write.html" target="_self">cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_21_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdfputvar.html" target="_self">cdfputvar</a></td><td class="desc"></td></tr>
-<tr id="row_21_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html" target="_self">cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_22_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_22_" class="arrow" onclick="toggleFolder('22_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_inqvar</b></td><td class="desc"></td></tr>
-<tr id="row_22_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__inqvar_1_1cdfinqvardim.html" target="_self">cdfinqvardim</a></td><td class="desc"></td></tr>
-<tr id="row_23_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_23_" class="arrow" onclick="toggleFolder('23_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_opncls</b></td><td class="desc"></td></tr>
-<tr id="row_23_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__opncls_1_1cdfopn.html" target="_self">cdfopn</a></td><td class="desc"></td></tr>
-<tr id="row_23_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__opncls_1_1cdf__open.html" target="_self">cdf_open</a></td><td class="desc"></td></tr>
-<tr id="row_23_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__opncls_1_1cdfcls.html" target="_self">cdfcls</a></td><td class="desc"></td></tr>
-<tr id="row_23_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__opncls_1_1cdf__close.html" target="_self">cdf_close</a></td><td class="desc"></td></tr>
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-<tr id="row_24_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__init.html" target="_self">ezspline_init</a></td><td class="desc"></td></tr>
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-<tr id="row_24_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezhybrid__init.html" target="_self">ezhybrid_init</a></td><td class="desc"></td></tr>
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-<tr id="row_24_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__setup.html" target="_self">ezspline_setup</a></td><td class="desc"></td></tr>
-<tr id="row_24_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__interp.html" target="_self">ezspline_interp</a></td><td class="desc"></td></tr>
-<tr id="row_24_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__derivative.html" target="_self">ezspline_derivative</a></td><td class="desc"></td></tr>
-<tr id="row_24_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__gradient.html" target="_self">ezspline_gradient</a></td><td class="desc"></td></tr>
-<tr id="row_24_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__isindomain.html" target="_self">ezspline_isindomain</a></td><td class="desc"></td></tr>
-<tr id="row_24_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__isgridregular.html" target="_self">ezspline_isgridregular</a></td><td class="desc"></td></tr>
-<tr id="row_24_10_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__save.html" target="_self">ezspline_save</a></td><td class="desc"></td></tr>
-<tr id="row_24_11_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__load.html" target="_self">ezspline_load</a></td><td class="desc"></td></tr>
-<tr id="row_24_12_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__modulo.html" target="_self">ezspline_modulo</a></td><td class="desc"></td></tr>
-<tr id="row_24_13_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__2netcdf.html" target="_self">ezspline_2netcdf</a></td><td class="desc"></td></tr>
-<tr id="row_25_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_25_" class="arrow" onclick="toggleFolder('25_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezspline_obj</b></td><td class="desc"></td></tr>
-<tr id="row_25_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline__obj_1_1ezspline__preinit.html" target="_self">ezspline_preinit</a></td><td class="desc"></td></tr>
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-<tr id="row_26_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_26_" class="arrow" onclick="toggleFolder('26_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezspline_type</b></td><td class="desc"></td></tr>
-<tr id="row_26_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline3__r8.html" target="_self">ezspline3_r8</a></td><td class="desc"></td></tr>
-<tr id="row_26_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline2__r8.html" target="_self">ezspline2_r8</a></td><td class="desc"></td></tr>
-<tr id="row_26_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline1__r8.html" target="_self">ezspline1_r8</a></td><td class="desc"></td></tr>
-<tr id="row_26_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline3__r4.html" target="_self">ezspline3_r4</a></td><td class="desc"></td></tr>
-<tr id="row_26_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline2__r4.html" target="_self">ezspline2_r4</a></td><td class="desc"></td></tr>
-<tr id="row_26_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline1__r4.html" target="_self">ezspline1_r4</a></td><td class="desc"></td></tr>
-<tr id="row_27_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_27_" class="arrow" onclick="toggleFolder('27_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>fftpack</b></td><td class="desc"></td></tr>
-<tr id="row_27_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1cftfax.html" target="_self">cftfax</a></td><td class="desc"></td></tr>
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-<tr id="row_27_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1fftfax.html" target="_self">fftfax</a></td><td class="desc"></td></tr>
-<tr id="row_27_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1fftrig.html" target="_self">fftrig</a></td><td class="desc"></td></tr>
-<tr id="row_28_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_28_" class="arrow" onclick="toggleFolder('28_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacefourier.html" target="_self">fourier</a></td><td class="desc">Module contains subroutines for computing FFT on parallel radial intervals. Converts quantities between real and fourier space. Note fixarray must be called once before call any of the Fourier subroutines to calculate all necessary sine and cosine factors on a fixed mesh of collocation angles </td></tr>
-<tr id="row_28_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structfourier_1_1fourier__class.html" target="_self">fourier_class</a></td><td class="desc">Base class containing fourier memory </td></tr>
-<tr id="row_28_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefourier_1_1check.html" target="_self">check</a></td><td class="desc">Interface for checking results of the unit tests </td></tr>
-<tr id="row_29_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_29_" class="arrow" onclick="toggleFolder('29_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>gmres_lib</b></td><td class="desc"></td></tr>
-<tr id="row_29_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgmres__lib_1_1gmres__info.html" target="_self">gmres_info</a></td><td class="desc"></td></tr>
-<tr id="row_30_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_30_" class="arrow" onclick="toggleFolder('30_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceguassian__process.html" target="_self">guassian_process</a></td><td class="desc">Defines the base class of the type guassian_process_class. The <a class="el" href="namespaceguassian__process.html" title="Defines the base class of the type guassian_process_class. The guassian_process contains code to comp...">guassian_process</a> contains code to compuet guassian process profiles </td></tr>
-<tr id="row_30_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structguassian__process_1_1gaussp__class.html" target="_self">gaussp_class</a></td><td class="desc">Base class representing a gaussian process </td></tr>
-<tr id="row_30_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structguassian__process_1_1gaussp__class__pointer.html" target="_self">gaussp_class_pointer</a></td><td class="desc">Pointer to a gaussian process object. Used for creating arrays of gaussian process pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_31_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_31_" class="arrow" onclick="toggleFolder('31_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>hessian</b></td><td class="desc"></td></tr>
-<tr id="row_31_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacehessian_1_1gather__array.html" target="_self">gather_array</a></td><td class="desc"></td></tr>
-<tr id="row_32_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_32_" class="arrow" onclick="toggleFolder('32_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintegration__path.html" target="_self">integration_path</a></td><td class="desc">Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path </td></tr>
-<tr id="row_32_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__class.html" target="_self">integration_path_class</a></td><td class="desc">Base class containing the parameters of the integration method to use </td></tr>
-<tr id="row_32_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__gleg__class.html" target="_self">integration_path_gleg_class</a></td><td class="desc">Subclass to use Gauss Legendre Quadrature </td></tr>
-<tr id="row_32_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__hp__glep__class.html" target="_self">integration_path_hp_glep_class</a></td><td class="desc">Subclass to use hp approch </td></tr>
-<tr id="row_32_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1vertex.html" target="_self">vertex</a></td><td class="desc">A single point in space defined by an z, y, z coordinate. A vertex is structured as a singly linked list </td></tr>
-<tr id="row_32_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1test__context.html" target="_self">test_context</a></td><td class="desc">A type for the test cases </td></tr>
-<tr id="row_32_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1test__search__context.html" target="_self">test_search_context</a></td><td class="desc">A type for the test cases </td></tr>
-<tr id="row_32_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1path__construct.html" target="_self">path_construct</a></td><td class="desc">Construction interface using <a class="el" href="interfaceintegration__path_1_1path__construct.html#a673e3bfd4635bd56c99612487fb3f9ce">path_construct_vertex</a> </td></tr>
-<tr id="row_32_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1path__destruct.html" target="_self">path_destruct</a></td><td class="desc">Destruct interface using <a class="el" href="interfaceintegration__path_1_1path__destruct.html#aa12dbaef70b4a4c1224499bf5904753a">path_destruct_vertex</a> </td></tr>
-<tr id="row_32_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1check.html" target="_self">check</a></td><td class="desc">Interface for checking the results of the unit tests </td></tr>
-<tr id="row_33_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_33_" class="arrow" onclick="toggleFolder('33_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintegration__path__context.html" target="_self">integration_path_context</a></td><td class="desc">Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path </td></tr>
-<tr id="row_33_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path__context_1_1integration__path__context__class.html" target="_self">integration_path_context_class</a></td><td class="desc">Integration context object interface </td></tr>
-<tr id="row_33_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path__context_1_1search__path__context__class.html" target="_self">search_path_context_class</a></td><td class="desc">Search context object interface </td></tr>
-<tr id="row_33_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path__context_1_1integration__function.html" target="_self">integration_function</a></td><td class="desc">Interface for the integration function </td></tr>
-<tr id="row_33_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path__context_1_1search__function.html" target="_self">search_function</a></td><td class="desc">Interface for the search function </td></tr>
-<tr id="row_34_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_34_" class="arrow" onclick="toggleFolder('34_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintpol.html" target="_self">intpol</a></td><td class="desc">Implements interferometry/polarimetry diagnostic. Defines the base class of the type <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> </td></tr>
-<tr id="row_34_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__class.html" target="_self">intpol_class</a></td><td class="desc">Base class representing a interferometer signal </td></tr>
-<tr id="row_34_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__pol__class.html" target="_self">intpol_pol_class</a></td><td class="desc">Base class representing a polarimetry signal </td></tr>
-<tr id="row_34_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__int__context.html" target="_self">intpol_int_context</a></td><td class="desc">Struture to hole all memort needed to be sent to the integration callback function </td></tr>
-<tr id="row_34_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__pol__context.html" target="_self">intpol_pol_context</a></td><td class="desc">Struture to hole all memort needed to be sent to the integration callback function </td></tr>
-<tr id="row_34_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__i.html" target="_self">intpol_gp_int_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function of a point </td></tr>
-<tr id="row_34_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__i.html" target="_self">intpol_gp_pol_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function of a point </td></tr>
-<tr id="row_34_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__s.html" target="_self">intpol_gp_int_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_34_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__s.html" target="_self">intpol_gp_pol_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_34_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__x.html" target="_self">intpol_gp_int_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for position </td></tr>
-<tr id="row_34_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__x.html" target="_self">intpol_gp_pol_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for position </td></tr>
-<tr id="row_35_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_35_" class="arrow" onclick="toggleFolder('35_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ipch_t</b></td><td class="desc"></td></tr>
-<tr id="row_35_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structipch__t_1_1ipch__desc.html" target="_self">ipch_desc</a></td><td class="desc"></td></tr>
-<tr id="row_36_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_36_" class="arrow" onclick="toggleFolder('36_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter.html" target="_self">limiter</a></td><td class="desc">Defines the base class of the type <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> </td></tr>
-<tr id="row_36_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter_1_1limiter__class.html" target="_self">limiter_class</a></td><td class="desc">Base class representing a limiter signal </td></tr>
-<tr id="row_37_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_37_" class="arrow" onclick="toggleFolder('37_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter__grid.html" target="_self">limiter_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> </td></tr>
-<tr id="row_37_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html" target="_self">limiter_grid_class</a></td><td class="desc">Base class representing a limiter signal </td></tr>
-<tr id="row_38_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_38_" class="arrow" onclick="toggleFolder('38_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter__iso__t.html" target="_self">limiter_iso_t</a></td><td class="desc">Defines the base class of the type limiter_iso </td></tr>
-<tr id="row_38_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html" target="_self">limiter_iso_class</a></td><td class="desc">Base class representing a limiter_iso function </td></tr>
-<tr id="row_39_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_39_" class="arrow" onclick="toggleFolder('39_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>liprec</b></td><td class="desc"></td></tr>
-<tr id="row_39_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gbfa.html" target="_self">li_gbfa</a></td><td class="desc"></td></tr>
-<tr id="row_39_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gbsl.html" target="_self">li_gbsl</a></td><td class="desc"></td></tr>
-<tr id="row_39_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gefa.html" target="_self">li_gefa</a></td><td class="desc"></td></tr>
-<tr id="row_39_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gesl.html" target="_self">li_gesl</a></td><td class="desc"></td></tr>
-<tr id="row_40_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_40_" class="arrow" onclick="toggleFolder('40_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacem__grid.html" target="_self">m_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>. This contains the state variables to define the vacuum vector potential </td></tr>
-<tr id="row_40_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structm__grid_1_1m__grid__class.html" target="_self">m_grid_class</a></td><td class="desc">Base class representing a m grid. This is grid contains information about the vacuum fields </td></tr>
-<tr id="row_41_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_41_" class="arrow" onclick="toggleFolder('41_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemagnetic.html" target="_self">magnetic</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> </td></tr>
-<tr id="row_41_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmagnetic_1_1magnetic__class.html" target="_self">magnetic_class</a></td><td class="desc">Base class representing a magnetic signal </td></tr>
-<tr id="row_42_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_42_" class="arrow" onclick="toggleFolder('42_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemagnetic__response.html" target="_self">magnetic_response</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> </td></tr>
-<tr id="row_42_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmagnetic__response_1_1magnetic__response__class.html" target="_self">magnetic_response_class</a></td><td class="desc">Base class representing a magnetic signal response function </td></tr>
-<tr id="row_42_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html" target="_self">magnetic_response_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> types using <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acf69545ff550e45977cf604d3e12984d">magnetic_response_construct_new</a>, &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acbfe705d07dc8eadd2eeb86d884069cc">magnetic_response_construct_point</a> or &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#a6c35981b55bef81a77099b7678fec1eb">magnetic_response_construct_netcdf</a> </td></tr>
-<tr id="row_43_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_43_" class="arrow" onclick="toggleFolder('43_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>mddc_cdf</b></td><td class="desc"></td></tr>
-<tr id="row_43_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__define.html" target="_self">mddc_cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_43_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__write.html" target="_self">mddc_cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_43_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__read.html" target="_self">mddc_cdf_read</a></td><td class="desc"></td></tr>
-<tr id="row_44_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_44_" class="arrow" onclick="toggleFolder('44_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>mddc_t</b></td><td class="desc"></td></tr>
-<tr id="row_44_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmddc__t_1_1mddc__mrf.html" target="_self">mddc_mrf</a></td><td class="desc"></td></tr>
-<tr id="row_44_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmddc__t_1_1mddc__desc.html" target="_self">mddc_desc</a></td><td class="desc"></td></tr>
-<tr id="row_44_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_44_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__construct.html" target="_self">mddc_construct</a></td><td class="desc"></td></tr>
-<tr id="row_44_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__destroy.html" target="_self">mddc_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_44_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__write.html" target="_self">mddc_write</a></td><td class="desc"></td></tr>
-<tr id="row_45_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_45_" class="arrow" onclick="toggleFolder('45_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemodel.html" target="_self">model</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmodel_1_1model__class.html">model_class</a>. The model contains information not specific to the equilibrium </td></tr>
-<tr id="row_45_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmodel_1_1model__class.html" target="_self">model_class</a></td><td class="desc">Base class representing a model </td></tr>
-<tr id="row_46_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_46_" class="arrow" onclick="toggleFolder('46_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemse.html" target="_self">mse</a></td><td class="desc">Implements motional stark effect diagnostic. Defines the base class of the type <a class="el" href="structmse_1_1mse__class.html">mse_class</a> </td></tr>
-<tr id="row_46_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmse_1_1mse__class.html" target="_self">mse_class</a></td><td class="desc">Base class representing a mse signal </td></tr>
-<tr id="row_47_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_47_" class="arrow" onclick="toggleFolder('47_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacenetcdf__inc.html" target="_self">netcdf_inc</a></td><td class="desc">Work around to fix some netcdf import problems with the Ezcdf. This module emulates the F77 interface using the F90 interface </td></tr>
-<tr id="row_47_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__open.html" target="_self">nf_open</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_47_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__create.html" target="_self">nf_create</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_47_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__close.html" target="_self">nf_close</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_47_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__enddef.html" target="_self">nf_enddef</a></td><td class="desc">Interface to inquire a dimension id </td></tr>
-<tr id="row_47_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__strerror.html" target="_self">nf_strerror</a></td><td class="desc">Interface to inquire a dimension id </td></tr>
-<tr id="row_47_5_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__inq__dimid.html" target="_self">nf_inq_dimid</a></td><td class="desc">Interface to inquire a dimension id </td></tr>
-<tr id="row_47_6_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__def__dim.html" target="_self">nf_def_dim</a></td><td class="desc">Interface to define a dimension </td></tr>
-<tr id="row_47_7_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__inq__varid.html" target="_self">nf_inq_varid</a></td><td class="desc">Interface to inquire a variable id </td></tr>
-<tr id="row_47_8_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__get__var__int.html" target="_self">nf_get_var_int</a></td><td class="desc">Interface for reading integer variables </td></tr>
-<tr id="row_47_9_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__var__int.html" target="_self">nf_put_var_int</a></td><td class="desc">Interface for writing integer variables </td></tr>
-<tr id="row_47_10_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__int.html" target="_self">nf_put_vara_int</a></td><td class="desc">Interface for writing integer variables </td></tr>
-<tr id="row_47_11_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__get__var__real.html" target="_self">nf_get_var_real</a></td><td class="desc">Interface for reading real variables. Note double 2D array used by complex real array values </td></tr>
-<tr id="row_47_12_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__real.html" target="_self">nf_put_vara_real</a></td><td class="desc">Interface for reading real variables. Note double 2D array used by complex real array values </td></tr>
-<tr id="row_47_13_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__var__real.html" target="_self">nf_put_var_real</a></td><td class="desc">Interface for writing real variables. Note double 2D array used by complex real array values </td></tr>
-<tr id="row_47_14_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__get__var__double.html" target="_self">nf_get_var_double</a></td><td class="desc">Interface for reading double variables </td></tr>
-<tr id="row_47_15_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__double.html" target="_self">nf_put_vara_double</a></td><td class="desc">Interface for reading double variables. Note double 2D array used by complex double array values </td></tr>
-<tr id="row_47_16_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__put__var__double.html" target="_self">nf_put_var_double</a></td><td class="desc">Interface for writing double variables </td></tr>
-<tr id="row_48_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_48_" class="arrow" onclick="toggleFolder('48_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>parallel_vmec_module</b></td><td class="desc"></td></tr>
-<tr id="row_48_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceparallel__vmec__module_1_1copylastntype.html" target="_self">copylastntype</a></td><td class="desc"></td></tr>
-<tr id="row_49_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_49_" class="arrow" onclick="toggleFolder('49_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacepprofile__t.html" target="_self">pprofile_t</a></td><td class="desc">Defines the base class of the type <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>. This module contains all the code necessary to define parameterized profiles </td></tr>
-<tr id="row_49_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structpprofile__t_1_1pprofile__class.html" target="_self">pprofile_class</a></td><td class="desc">Base class representing a parameterized profile </td></tr>
-<tr id="row_49_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structpprofile__t_1_1pprofile__pointer.html" target="_self">pprofile_pointer</a></td><td class="desc">Pointer to a pprofile object. Used for creating arrays of pprofile pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_50_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_50_" class="arrow" onclick="toggleFolder('50_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceprimed__grid.html" target="_self">primed_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral </td></tr>
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-<tr id="row_57_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__context_1_1siesta__context__class.html" target="_self">siesta_context_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesiesta__context.html" title="Defines the base class of the type siesta_context_class. This contains the state variables needed by ...">siesta_context</a>. This contains a copy of every variable that is needed to define the SIESTA state </td></tr>
-<tr id="row_58_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_58_" class="arrow" onclick="toggleFolder('58_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__equilibrium.html" target="_self">siesta_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>. This module contains all the code necessary to interface V3FIT with SIESTA </td></tr>
-<tr id="row_58_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html" target="_self">siesta_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesiesta__equilibrium.html" title="Defines the base class of the type siesta_class. This module contains all the code necessary to inter...">siesta_equilibrium</a> </td></tr>
-<tr id="row_59_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_59_" class="arrow" onclick="toggleFolder('59_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__file.html" target="_self">siesta_file</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>. This contains the output of a siesta equilibrium </td></tr>
-<tr id="row_59_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__file_1_1siesta__file__class.html" target="_self">siesta_file_class</a></td><td class="desc">Base class representing a siesta output </td></tr>
-<tr id="row_60_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_60_" class="arrow" onclick="toggleFolder('60_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__run.html" target="_self">siesta_run</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>. This module contains all the code necessary to interface setup and run SIESTA </td></tr>
-<tr id="row_60_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__run_1_1siesta__run__class.html" target="_self">siesta_run_class</a></td><td class="desc">Interface for the <a class="el" href="namespacesiesta__run.html" title="Defines the base class of the type siesta_run_class. This module contains all the code necessary to i...">siesta_run</a> constructor </td></tr>
-<tr id="row_61_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_61_" class="arrow" onclick="toggleFolder('61_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesignal.html" target="_self">signal</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> </td></tr>
-<tr id="row_61_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal_1_1signal__class.html" target="_self">signal_class</a></td><td class="desc">Base class representing a signal </td></tr>
-<tr id="row_61_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal_1_1signal__pointer.html" target="_self">signal_pointer</a></td><td class="desc">Pointer to a signal object. Used for creating arrays of signal pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_61_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesignal_1_1signal__construct.html" target="_self">signal_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> types using <a class="el" href="interfacesignal_1_1signal__construct.html#a273530affe49200dfa2ea120360189ee">signal_construct_new</a> or <a class="el" href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">signal_construct_diagnostic_netcdf</a> </td></tr>
-<tr id="row_62_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_62_" class="arrow" onclick="toggleFolder('62_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesignal__dot.html" target="_self">signal_dot</a></td><td class="desc">Defines the base class of type <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>. This module contains common code used in parsing diagnostic dot files. The actual parsing of the diagnostic dot file is handled by <a class="el" href="namespaceipch__dot.html">ipch_dot</a>, <a class="el" href="namespacethscte__dot.html">thscte_dot</a> and <a class="el" href="namespacesxrch__dot.html">sxrch_dot</a> </td></tr>
-<tr id="row_62_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal__dot_1_1signal__dot__file.html" target="_self">signal_dot_file</a></td><td class="desc">Base class representing a diagnostic dot file. This is an opaqe class </td></tr>
-<tr id="row_63_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_63_" class="arrow" onclick="toggleFolder('63_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesurface__commandline__parser.html" target="_self">surface_commandline_parser</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> </td></tr>
-<tr id="row_63_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html" target="_self">surface_commandline_parser_class</a></td><td class="desc">Base class containing a parsed surface_commandline </td></tr>
-<tr id="row_64_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_64_" class="arrow" onclick="toggleFolder('64_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesurface__context.html" target="_self">surface_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>. This module contains all the code necessary define a surface for cariddi to read a virtual surface from </td></tr>
-<tr id="row_64_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsurface__context_1_1surface__context__class.html" target="_self">surface_context_class</a></td><td class="desc">Base class representing a surface context. This contains all memory needed to operate surface </td></tr>
-<tr id="row_65_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_65_" class="arrow" onclick="toggleFolder('65_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>sxrch_t</b></td><td class="desc"></td></tr>
-<tr id="row_65_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrch__t_1_1sxrch__desc.html" target="_self">sxrch_desc</a></td><td class="desc"></td></tr>
-<tr id="row_66_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_66_" class="arrow" onclick="toggleFolder('66_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrem.html" target="_self">sxrem</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> </td></tr>
-<tr id="row_66_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__class.html" target="_self">sxrem_class</a></td><td class="desc">Base class representing a soft x-ray signal </td></tr>
-<tr id="row_66_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__emiss__class.html" target="_self">sxrem_emiss_class</a></td><td class="desc">Base class representing a soft x-ray emissivity signal </td></tr>
-<tr id="row_66_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__ti__class.html" target="_self">sxrem_ti_class</a></td><td class="desc">Base class representing a soft x-ray ti signal </td></tr>
-<tr id="row_66_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__context.html" target="_self">sxrem_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_66_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__ti__context.html" target="_self">sxrem_ti_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_66_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__i.html" target="_self">sxrem_gp_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for point </td></tr>
-<tr id="row_66_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__i.html" target="_self">sxrem_gp_ti_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for point </td></tr>
-<tr id="row_66_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__s.html" target="_self">sxrem_gp_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_66_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__s.html" target="_self">sxrem_gp_ti_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_66_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__x.html" target="_self">sxrem_gp_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_66_10_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__x.html" target="_self">sxrem_gp_ti_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_67_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_67_" class="arrow" onclick="toggleFolder('67_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrem__ratio.html" target="_self">sxrem_ratio</a></td><td class="desc">Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity profile. This signal feeds back the temperature profile at a specified positon </td></tr>
-<tr id="row_67_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html" target="_self">sxrem_ratio_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a> signal </td></tr>
-<tr id="row_68_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_68_" class="arrow" onclick="toggleFolder('68_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>system_mod</b></td><td class="desc"></td></tr>
-<tr id="row_68_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1system.html" target="_self">system</a></td><td class="desc"></td></tr>
-<tr id="row_68_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1chdir.html" target="_self">chdir</a></td><td class="desc"></td></tr>
-<tr id="row_68_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1getenv.html" target="_self">getenv</a></td><td class="desc"></td></tr>
-<tr id="row_68_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1putenv.html" target="_self">putenv</a></td><td class="desc"></td></tr>
-<tr id="row_68_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1pxffork.html" target="_self">pxffork</a></td><td class="desc"></td></tr>
-<tr id="row_68_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1getpid.html" target="_self">getpid</a></td><td class="desc"></td></tr>
-<tr id="row_68_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1pxfwait.html" target="_self">pxfwait</a></td><td class="desc"></td></tr>
-<tr id="row_69_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_69_" class="arrow" onclick="toggleFolder('69_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacethomson.html" target="_self">thomson</a></td><td class="desc">Implements thomson scattering diagnostic. Defines the base class of the type <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> </td></tr>
-<tr id="row_69_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__class.html" target="_self">thomson_class</a></td><td class="desc">Base class representing a thomson scattering signal </td></tr>
-<tr id="row_69_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__te__class.html" target="_self">thomson_te_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_69_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__ne__class.html" target="_self">thomson_ne_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_69_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__p__class.html" target="_self">thomson_p_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_70_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_70_" class="arrow" onclick="toggleFolder('70_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>thscte_t</b></td><td class="desc"></td></tr>
-<tr id="row_70_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthscte__t_1_1thscte__desc.html" target="_self">thscte_desc</a></td><td class="desc"></td></tr>
-<tr id="row_71_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_71_" class="arrow" onclick="toggleFolder('71_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceunprimed__grid.html" target="_self">unprimed_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral </td></tr>
-<tr id="row_71_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html" target="_self">unprimed_grid_class</a></td><td class="desc">Base class representing a unprimed grid. This is grid the volume integral will be summed over </td></tr>
-<tr id="row_72_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_72_" class="arrow" onclick="toggleFolder('72_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceutilities.html" target="_self">utilities</a></td><td class="desc">This file contains utilities for converting the siesta grids </td></tr>
-<tr id="row_72_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1to__full__mesh.html" target="_self">to_full_mesh</a></td><td class="desc">Interface to convert between half and full mesh using either <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> or <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">to_full_mesh3</a> </td></tr>
-<tr id="row_72_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1to__half__mesh.html" target="_self">to_half_mesh</a></td><td class="desc">Interface to convert between full and half mesh using either <a class="el" href="interfaceutilities_1_1to__half__mesh.html">to_half_mesh</a> or <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a17173a22873cc4031419a3f79fcb5abe">to_half_mesh_p</a> </td></tr>
-<tr id="row_72_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1gradienthalf.html" target="_self">gradienthalf</a></td><td class="desc">Interface to take the gradianet from full to half mesh using either GradientHalf or GradientHalf_p </td></tr>
-<tr id="row_72_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1curl__htof.html" target="_self">curl_htof</a></td><td class="desc">Interface to take the curl on a half mesh quantity and return a full mesh using either <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a> or <a class="el" href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">curl_htof_targ</a> </td></tr>
-<tr id="row_72_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html" target="_self">set_bndy_fouier_m0</a></td><td class="desc">Interface to set the fouier conditions on a quantity for either scalar <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> or vector <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> quantities </td></tr>
-<tr id="row_73_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_73_" class="arrow" onclick="toggleFolder('73_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>v3_utilities</b></td><td class="desc"></td></tr>
-<tr id="row_73_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacev3__utilities_1_1assert.html" target="_self">assert</a></td><td class="desc"></td></tr>
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-<tr id="row_74_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__context_1_1v3fit__context__class.html" target="_self">v3fit_context_class</a></td><td class="desc">Base class representing a v3fit context. This contains all memory needed to operate v3fit </td></tr>
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-<tr id="row_76_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3post__rfun_1_1signals.html" target="_self">signals</a></td><td class="desc"></td></tr>
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-<tr id="row_77_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html" target="_self">v3rfun_context_class</a></td><td class="desc">Base class representing a v3rfun context. This contains all memory needed to operate v3rfun </td></tr>
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-<tr id="row_78_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvacfield__mod_1_1angles__shifts.html" target="_self">angles_shifts</a></td><td class="desc"></td></tr>
-<tr id="row_78_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevacfield__mod_1_1write__invac.html" target="_self">write_invac</a></td><td class="desc"></td></tr>
-<tr id="row_79_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_79_" class="arrow" onclick="toggleFolder('79_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevacuum__equilibrium.html" target="_self">vacuum_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>. This module contains all the code necessary to interface V3FIT with a vacuum equilibrium </td></tr>
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-<tr id="row_80_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1point.html" target="_self">point</a></td><td class="desc"></td></tr>
-<tr id="row_80_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1magfield.html" target="_self">magfield</a></td><td class="desc"></td></tr>
-<tr id="row_80_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1pbfield.html" target="_self">pbfield</a></td><td class="desc"></td></tr>
-<tr id="row_80_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1vertex.html" target="_self">vertex</a></td><td class="desc"></td></tr>
-<tr id="row_80_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1pvertex.html" target="_self">pvertex</a></td><td class="desc"></td></tr>
-<tr id="row_81_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_81_" class="arrow" onclick="toggleFolder('81_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__context.html" target="_self">vmec_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>. This contains the state variables needed by VMEC </td></tr>
-<tr id="row_81_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__context_1_1vmec__context__class.html" target="_self">vmec_context_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a>. This contains a copy of every variable that is needed to define the VMEC state </td></tr>
-<tr id="row_82_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_82_" class="arrow" onclick="toggleFolder('82_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__equilibrium.html" target="_self">vmec_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>. This module contains all the code necessary to interface V3FIT with VMEC </td></tr>
-<tr id="row_82_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html" target="_self">vmec_magnetic_cache</a></td><td class="desc">Object to cache data needed to compute magnetic signals </td></tr>
-<tr id="row_82_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__equilibrium_1_1vmec__class.html" target="_self">vmec_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacevmec__equilibrium.html" title="Defines the base class of the type vmec_class. This module contains all the code necessary to interfa...">vmec_equilibrium</a> </td></tr>
-<tr id="row_82_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__equilibrium_1_1runvmec.html" target="_self">runvmec</a></td><td class="desc">Forward declare the interface for <a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a> </td></tr>
-<tr id="row_83_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_83_" class="arrow" onclick="toggleFolder('83_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__file.html" target="_self">vmec_file</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>. This contains the output of a vmec equilibrium </td></tr>
-<tr id="row_83_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__file_1_1vmec__file__class.html" target="_self">vmec_file_class</a></td><td class="desc">Base class representing a vmec output </td></tr>
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-<tr id="row_84_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvmec__test_1_1commandline__parser.html" target="_self">commandline_parser</a></td><td class="desc">A radial quantity </td></tr>
-<tr id="row_85_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_85_" class="arrow" onclick="toggleFolder('85_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>vmec_utils</b></td><td class="desc"></td></tr>
-<tr id="row_85_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1getbcyl.html" target="_self">getbcyl</a></td><td class="desc"></td></tr>
-<tr id="row_85_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1getjcyl.html" target="_self">getjcyl</a></td><td class="desc"></td></tr>
-<tr id="row_85_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1mse__pitch.html" target="_self">mse_pitch</a></td><td class="desc"></td></tr>
-<tr id="row_86_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_86_" class="arrow" onclick="toggleFolder('86_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>write_array_generic</b></td><td class="desc"></td></tr>
-<tr id="row_86_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacewrite__array__generic_1_1write__array.html" target="_self">write_array</a></td><td class="desc"></td></tr>
-<tr id="row_87_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_87_" class="arrow" onclick="toggleFolder('87_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcommandline__parser.html" target="_self">commandline_parser</a></td><td class="desc">A radial quantity </td></tr>
-<tr id="row_87_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcommandline__parser_1_1commandline__parser__class.html" target="_self">commandline_parser_class</a></td><td class="desc">Base class containing a parsed commandline </td></tr>
-<tr id="row_88_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classcosine.html" target="_self">cosine</a></td><td class="desc">Cosine Parity function interface </td></tr>
-<tr id="row_89_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfull__grid.html" target="_self">full_grid</a></td><td class="desc">A full grid quantity </td></tr>
-<tr id="row_90_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classhalf__grid.html" target="_self">half_grid</a></td><td class="desc">A half grid quantity </td></tr>
-<tr id="row_91_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classparity.html" target="_self">parity</a></td><td class="desc">Parity function interface </td></tr>
-<tr id="row_92_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classradial__quantity.html" target="_self">radial_quantity</a></td><td class="desc">A radial quantity </td></tr>
-<tr id="row_93_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classsiesta__fourier.html" target="_self">siesta_fourier</a></td><td class="desc">A cosine parity vmec quantity </td></tr>
-<tr id="row_94_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classsiesta__grid.html" target="_self">siesta_grid</a></td><td class="desc">A radial siesta quantity </td></tr>
-<tr id="row_95_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classsiesta__quantities.html" target="_self">siesta_quantities</a></td><td class="desc">Siesta quantities </td></tr>
-<tr id="row_96_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classsine.html" target="_self">sine</a></td><td class="desc">Sine Parity function interface </td></tr>
-<tr id="row_97_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvector3d.html" target="_self">vector3d</a></td><td class="desc">A vector </td></tr>
-<tr id="row_98_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvertex.html" target="_self">vertex</a></td><td class="desc">A vertex </td></tr>
-<tr id="row_99_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvmec__fourier.html" target="_self">vmec_fourier</a></td><td class="desc">A cosine parity vmec quantity </td></tr>
-<tr id="row_100_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvmec__grid.html" target="_self">vmec_grid</a></td><td class="desc">A radial vmec quantity </td></tr>
-<tr id="row_101_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvmec__quantities.html" target="_self">vmec_quantities</a></td><td class="desc">Vmec quantities </td></tr>
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-<div class="title">V3FIT Architecture </div>  </div>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#architecture_intro">Introducion</a></li>
-<li class="level1"><a href="#architecture_class_objects">Class Objects</a><ul><li class="level2"><a href="#architecture_class_objects_equilibrium">Equilibrium</a><ul><li class="level3"><a href="#architecture_class_objects_vmec_equilibrium">VMEC</a></li>
-<li class="level3"><a href="#architecture_class_objects_vacuum_equilibrium">VACUUM</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#architecture_class_objects_model">Model</a></li>
-<li class="level2"><a href="#architecture_class_objects_parameter">Parameter</a></li>
-<li class="level2"><a href="#architecture_class_objects_signal">Signal</a><ul><li class="level3"><a href="#architecture_class_objects_diagnostic_signal">Diagnostic</a></li>
-<li class="level3"><a href="#architecture_class_objects_geometric_signal">Geometric</a></li>
-<li class="level3"><a href="#architecture_class_objects_prior_signal">Prior</a></li>
-<li class="level3"><a href="#architecture_class_objects_combination_signal">Combination Signals</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#architecture_class_objects_reconstruction">Reconstruction</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#architecture_class_objects_other">Other Objects</a></li>
-</ul>
-</div>
-<div class="textblock"><p>Overview of the architecture of V3FIT.</p>
-<h1><a class="anchor" id="architecture_intro"></a>
-Introducion</h1>
-<p>Dedesign goals of V3FIT are to provide an easily extensible code for the purposes of fully three dimensional equilibirum reconstruction. To achieve this, V3FIT uses object oriented programming techniquies to create abstract away the implementation details. This abstraction allows extension of code without altering large parts of the code base.</p>
-<p>This page provided an overview of the V3FIT architecture and describes how the various subsystems work together in a broad general sense. For specifics, consult the application programming interface (API) documentation.</p>
-<h1><a class="anchor" id="architecture_class_objects"></a>
-Class Objects</h1>
-<p>V3FIT is written to be object oriented with five major classes. Two of the class, the equlibrium and signal classes, are designed to be subclassed and provide an abstract interface. While the model, parameter and reconstruction classes are designed as self contained objects to encapsilate the V3FIT functionality. An overview of the V3FIT object oriented programming pattern is documented in the <a class="el" href="class_anatomy.html">Class Anatomy</a> page.</p>
-<h2><a class="anchor" id="architecture_class_objects_equilibrium"></a>
-Equilibrium</h2>
-<p>The equilibrium class provides an abstract interface to abstract away the details of the equilibrium from the rest of V3FIT. All equilibrium solvers are implemented as a subclass of this class. The methods of the equilibrium class should be generally applicible to all equilibrium solvers and all access to the equilibrium should be performed through the equilibrium class. Currently, there are two subclasses of the equilibrium class implemented. The equilibrium coding is contained in the <a class="el" href="namespaceequilibrium.html">equilibrium</a> module.</p>
-<h3><a class="anchor" id="architecture_class_objects_vmec_equilibrium"></a>
-VMEC</h3>
-<p>The VMEC equilibrium is an fully three dimensional equilibrium solver that assumed closed nested flux surfaces. The VMEC equilibrium is implemented in the <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> module.</p>
-<h3><a class="anchor" id="architecture_class_objects_vacuum_equilibrium"></a>
-VACUUM</h3>
-<p>The VACUUM equilibrium is a simple model that assumes there is no plasma. As a result, the VACUUM equilibrium is only useful for reconstructing based on magnetic signals. The vacuum equilibirum computes the magnetic fields generated external coils. This simplicity extends into the equilibrium coding as well. Since the vacuum doesn't contain the concept of temperature, density, pressure and other quanitied that are only relievent in the presence of a plasma, many methods maybe inherited from the equilibium class. The VACUUM equilibrium is implemented in the <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a> module.</p>
-<h2><a class="anchor" id="architecture_class_objects_model"></a>
-Model</h2>
-<p>The model class provides the primary interface signals to access the equilibrium model. The model contains everything that is not provided directly from the equilibrium but generic every equilibrium. The model class stores an instance of the equilibrium. The model is implemented in the <a class="el" href="namespacemodel.html">model</a> module.</p>
-<h2><a class="anchor" id="architecture_class_objects_parameter"></a>
-Parameter</h2>
-<p>The parameter class encapliates all the information and procdures to get, set, increment and contraint a reconstruction parameter. The parameter class conatines an ID obtained from the model that represents a reconstructable quantitiy. This quanitily may be subjected to a set of constraints. Access to the underlying quanitiy is handled through the model object's setter and getter routines. The parameter class is implemented in the <a class="el" href="namespacev3fit__params.html">v3fit_params</a> module.</p>
-<h2><a class="anchor" id="architecture_class_objects_signal"></a>
-Signal</h2>
-<p>The signal class provides an abstract interface to abstract away the details of the signals from the rest of V3FIT. Signals are further subclassed into four categories. Diagnostics refer to experimentally measured quanities. Geometric signals refer to the shapes and positions of equilibrium. Priors refer a priori knowlegde about the system. Combination allow combinig any privious signal in to composite signal. The signal class is implemented in the <a class="el" href="namespacesignal.html">signal</a> module.</p>
-<h3><a class="anchor" id="architecture_class_objects_diagnostic_signal"></a>
-Diagnostic</h3>
-<p>The diagnostic class is a generic super class to experimentally measured quantities. This class is subclassed by <a class="el" href="namespacemagnetic.html">magnetic</a>, <a class="el" href="namespacesxrem.html">sxrem</a>, <a class="el" href="namespaceintpol.html">intpol</a>, <a class="el" href="namespacethomson.html">thomson</a> and <a class="el" href="namespaceextcurz.html">extcurz</a> diagnostics. The diagnostic class is implemented in the diagnostic module.</p>
-<h3><a class="anchor" id="architecture_class_objects_geometric_signal"></a>
-Geometric</h3>
-<p>The geometric class is a generic super class to geometric quantities. This class is subclassed by the <a class="el" href="namespacelimiter.html">limiter</a> class. The geometric class is implemented in the geometric module.</p>
-<h3><a class="anchor" id="architecture_class_objects_prior_signal"></a>
-Prior</h3>
-<p>The prior class is a generic super class to prior knowlegde quantities. This class is subclassed by the <a class="el" href="namespaceprior__gaussian.html">prior_gaussian</a> class. Prior maybe defined on any quanitiy that me be simply looked up. If additional computation is required the signal should be added as a diagnostic or geometric depending on context. The prior class is implemented in the prior module.</p>
-<h3><a class="anchor" id="architecture_class_objects_combination_signal"></a>
-Combination Signals</h3>
-<p>Combination classes allow signals to be combined in multiple ways. The combination signal contains an array of signal pointers. Signals are combined by calling the get signal method on each pointed. The prior class is implemented in the <a class="el" href="namespacesignal.html">signal</a> module. Note, since this signal need to use the signal interface, the rule of one class per module needs to be broken in order to avoid a circular module dependency.</p>
-<h2><a class="anchor" id="architecture_class_objects_reconstruction"></a>
-Reconstruction</h2>
-<p>The reconstruction class encapsilated the reconstruction algrothium. The reconstruction class is implemented in the <a class="el" href="namespacereconstruction.html">reconstruction</a> module.</p>
-<h1><a class="anchor" id="architecture_class_objects_other"></a>
-Other Objects</h1>
-<p>Other sections of the code are also implented as objects as well. The most important of these auxiliary objects is the context class. This class is a single object that contains all the memory and objects used by V3FIT. This context can be used to store, copy and reset the state of V3FIT. The context class is implemented in the <a class="el" href="namespacev3fit__context.html">v3fit_context</a> module. </p>
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-<p>Contains module <a class="el" href="namespacebmw__context.html">bmw_context</a>.  
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-<tr class="memdesc:a1c7620fdb1baa02f56560edf0d647416"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="namespacebmw__context.html#a1c7620fdb1baa02f56560edf0d647416">More...</a><br /></td></tr>
-<tr class="separator:a1c7620fdb1baa02f56560edf0d647416"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a2c9c6c7740f42649991701946c04640b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="namespacebmw__context.html#a2c9c6c7740f42649991701946c04640b">More...</a><br /></td></tr>
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-<tr class="separator:a8ee1d70848bb1bef3e65cc7da7001805"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a566dc6ab8d4ff82fee14e9a6844a3e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a1a566dc6ab8d4ff82fee14e9a6844a3e">bmw_context::bmw_context_set_up_grid_m</a> (this, p_start, p_end, parallel, io_unit)</td></tr>
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-<tr class="separator:a1a566dc6ab8d4ff82fee14e9a6844a3e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16b344b8f4d1fbc224ebce3561d2a0f9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a16b344b8f4d1fbc224ebce3561d2a0f9">bmw_context::bmw_context_set_up_grid_a</a> (this, r_grid, z_grid, dphi, parallel, io_unit)</td></tr>
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-<tr class="separator:a16b344b8f4d1fbc224ebce3561d2a0f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a05733762ffd48b52b7c3ed11fabdd367"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a743c401df6cead2131573e6b002b2217">bmw_context::series</a> = 3</td></tr>
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-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacebmw__parallel__context.html">bmw_parallel_context</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a749a1ae195871249c5d9927c0ec07fe7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9bbf8d8fa7c25b3bbf3cf7ff819a76c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="contents">
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-<ul><li class="level1"><a href="#bmw_cl_parsing_intro">Introduction</a></li>
-<li class="level1"><a href="#bmw_cl_parsing_arg_sec">Command Line Arguments</a></li>
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-Introduction</h1>
-<p>This contains a description of the command line arguments. All arguments take the form of</p>
-<p><code>-arg=value</code></p>
-<h1><a class="anchor" id="bmw_cl_parsing_arg_sec"></a>
-Command Line Arguments</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Argument</code></td><td width="5%">Takes Value</td><td width="75%">Discription</td></tr>
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-<td width="20%"><code>@fixed_wdith{-jv}</code></td><td width="5%">N</td><td width="75%">Force balance j^v from curl derived j^u. Overrdes the -ju flag. </td></tr>
-<tr>
-<td width="20%"><code>@fixed_wdith{-ju}</code></td><td width="5%">N</td><td width="75%">Force balance j^u from curl derived j^v. @item3{@fixed_wdith{-p_start}, Y, Starting phi index to compute fields. If this flag is not set, default to index 1.} @item3{@fixed_wdith{-p_end}, Y, Ending phi index to compute fields. If this flag is not set, default to the last index.} </td></tr>
-<tr>
-<td width="20%"><code><code>-para</code></code></td><td width="5%">Y</td><td width="75%">Configures openmp parallelism. The value of this flag sets the maximum number of threads to use. A value of <code>-1</code> uses the default. @item3{<code>-force</code>, N, Force override of error conditions. To prevent loss of valid data, BMW will terminate if an error condition is triggerd. This flag overrides that error potential overwritting valid data.} </td></tr>
-<tr>
-<td width="20%"><code><code>-num_r</code></code></td><td width="5%">Y</td><td width="75%">Number radial points. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-num_p</code></code></td><td width="5%">Y</td><td width="75%">Number toroidal points. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-num_z</code></code></td><td width="5%">Y</td><td width="75%">Number vertial points. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-rmax</code></code></td><td width="5%">Y</td><td width="75%">Maximum radial grid. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-rmin</code></code></td><td width="5%">Y</td><td width="75%">Minimum radial grid. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-zmax</code></code></td><td width="5%">Y</td><td width="75%">Maximum vertical grid. Note not used when mgridf is specified. </td></tr>
-<tr>
-<td width="20%"><code><code>-zmin</code></code></td><td width="5%">Y</td><td width="75%">Minimum vertical grid. Note not used when mgridf is specified. </td></tr>
-</table>
-<dl class="section note"><dt>Note</dt><dd>OpenMP and MPI support must be configured at compile time to use. A simple way to check if support has been included is to check the command line help <code>-h</code>.</dd></dl>
-<h1><a class="anchor" id="bmw_cl_pasring_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement command line parsing is found in the <a class="el" href="namespacebmw__commandline__parser.html">bmw_commandline_parser</a> module. </p>
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-<div class="title">Stellarator-Tools Build System </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#build_system_intro">Introduction</a></li>
-<li class="level1"><a href="#build_system_clone">Obtaining the code.</a></li>
-<li class="level1"><a href="#build_system_config">Configuring Build</a></li>
-<li class="level1"><a href="#build_system_make">Makefile</a></li>
-<li class="level1"><a href="#build_system_dependencies">Dependencies</a><ul><li class="level2"><a href="#build_system_libraries">Libraries</a></li>
-<li class="level2"><a href="#build_system_sources">Sources</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#build_system_documentation">Documentation</a></li>
-<li class="level1"><a href="#build_system_testing">Testing</a></li>
-<li class="level1"><a href="#build_system_running">Running Cmake</a><ul><li class="level2"><a href="#build_system_cmake_variables">Cmake Variables</a><ul><li class="level3"><a href="#build_system_cmake_variables_builtin">Built In Variables</a></li>
-<li class="level3"><a href="#build_system_cmake_variables_defined">Defined Variables</a></li>
-</ul>
-</li>
-</ul>
-</li>
-<li class="level1"><a href="#build_system_build_directory">Build Directory</a></li>
-<li class="level1"><a href="#build_system_trouble_shooting">Trouble Shooting</a></li>
-</ul>
-</div>
-<div class="textblock"><p>Overview of the Cmake based build system for the Stellarator-Tools suite of codes.</p>
-<h1><a class="anchor" id="build_system_intro"></a>
-Introduction</h1>
-<p>The Stellarator-Tools suite of codes is designed as an umbrella project. The main build system is locacted in the <a href="https://github.com/ORNL-Fusion/Stellarator-Tools.git">Stellarator-Tools</a> GitHub repository. The build system in build around <a href="http://www.cmake.org">cmake</a> and requires a version greater than 3.14. This build system is designed to automatically download dependent projects when a tool is enabled. Cmake can be configured by setting various variables on the command line </p><div class="fragment"><div class="line">-DVARIABLE=value</div>
-<div class="line">-DOTHER_VARIABLE=<span class="stringliteral">&quot;value1 value2 value3&quot;</span></div>
-</div><!-- fragment --><p> or by using the <code>ccmake</code> interactive tool. Once a variable has been set on the cmake command line, that value is cached and it is no longer necessary to reset it for subsequent Cmake commands. This build system is also designed to obtain the latest sources evertime the code is recompiled.</p>
-<h1><a class="anchor" id="build_system_clone"></a>
-Obtaining the code.</h1>
-<p>The <a href="https://github.com/ORNL-Fusion/Stellarator-Tools.git">Stellarator-Tools</a> is the main project from which all subprojects are compiled. To obtain the code use the command </p><div class="fragment"><div class="line">git clone https:<span class="comment">//github.com/ORNL-Fusion/Stellarator-Tools.git</span></div>
-</div><!-- fragment --><h1><a class="anchor" id="build_system_config"></a>
-Configuring Build</h1>
-<p>In this section we will focus on the \fixed_with{ccmake} tool. First navigate to root directory of the repository. Then create a build directory. Typically this is created at the root directory of the repository however it can be anywhere. From inside the build directory run the <code>ccmake</code> command. </p><div class="fragment"><div class="line">cd Stellarator-Tools</div>
-<div class="line">mkdir build</div>
-<div class="line">ccmake ../</div>
-</div><!-- fragment --><p>Initialially there will be no options. </p><div class="image">
-<img src="cmake1.png" alt=""/>
-</div>
-<p> At the bottom of the screen, there are various command. Pressing the <code>c</code> key begins the configure process. Once initally configured, there will be several options. Different tools in the Stellarator-Tools suite of codes can be configured to be built by toggling the <code>BUILD_<em>code</em></code> from <code>off</code> to <code>on</code>. </p><div class="image">
-<img src="cmake2.png" alt=""/>
-</div>
-<p> After changing settings, keep pressing the <code>c</code> key until the <code>g</code> options appears. </p><div class="image">
-<img src="cmake3.png" alt=""/>
-</div>
-<p> After hitting the <code>g</code> option <code>ccmake</code> will exit and a <code>Makefile</code> will be generated. The codes can then be build using <code>make</code> command.</p>
-<h1><a class="anchor" id="build_system_make"></a>
-Makefile</h1>
-<p>For Stellarator-Tools, Cmake generates makefiles that can be used to build various components. The resulting makefiles contain a bunch of tasks. These tasks can be displayed using the </p><div class="fragment"><div class="line">make help</div>
-</div><!-- fragment --><p> command. For debugging purposes, the full build commandline commands can be displaced using. </p><div class="fragment"><div class="line">make VERBOSE=1</div>
-</div><!-- fragment --><h1><a class="anchor" id="build_system_dependencies"></a>
-Dependencies</h1>
-<p>Dependencies on any software project fall under three types. When enableing a code dependend codes are also automatrically enabled. By default, all codes build from the <code>master</code> branch. To build specific branches or tags, set the <code>BUILD_TAG_<em>code</em></code> variables. Subprojects are registered using the <code>register_project</code> Cmake macro.</p>
-<p>The next type of dependecy is external libraies that provide functionality that the code uses must be found for the build system to use. The third type of dependency is determining the proper build order. Cmake automatically handles this step.</p>
-<h2><a class="anchor" id="build_system_libraries"></a>
-Libraries</h2>
-<p>The codes in the Stellarator-Tools suite requires a few external libraries to build. LAPACK and BLAS provide linear algebra routines. Optimized version of these libraies are typically included by an OS or compiler vendor. These packages are found automatically by Cmake using the </p><div class="fragment"><div class="line">find_package</div>
-</div><!-- fragment --><p> function. If for some reason Cmake cannot find working copies of these libraries an error message should instruct the correct variables to set. If libraries can be found in non standard paths, setting the <code>CMAKE_PREFIX_PATH</code> variable will allow the automated search functions to find these files.</p>
-<p>The <a href="http://www.unidata.ucar.edu/software/netcdf/">NetCDF</a> library provides routines for reading and writting binary files. Unlike the LAPACK/BLAS libraries, Cmake does not come with a built in package to find the netcdf routines. Routines for automatically locating these in standard paths can be found are provided. If the path is not standard, set the <code>CMAKE_PREFIX_PATH</code>. Should both this methods fail the </p><div class="fragment"><div class="line">-DNetCDF_C_INCLUDE_DIR=<span class="stringliteral">&quot;/path/to/the/netcdf/include&quot;</span></div>
-<div class="line">-DNetCDF_C_LIBRARY=<span class="stringliteral">&quot;/path/to/the/netcdf/lib/libnetcdf.a&quot;</span></div>
-<div class="line">-DNetCDF_Fortran_LIBRARY=<span class="stringliteral">&quot;/path/to/the/netcdf/lib/libnetcdff.a&quot;</span></div>
-</div><!-- fragment --><p> can be set manually.</p>
-<p>The codes also may use the <a href="https://netlib.org/scalapack/">ScaLAPACK</a> library. Routines for finding these are also included. If the path is not standard, set the <code>CMAKE_PREFIX_PATH</code>. Should both this methods fail the </p><div class="fragment"><div class="line">-DSCALAPACK_LIBRARY=<span class="stringliteral">&quot;/path/to/the/scalack/lib/libscalapack.a&quot;</span></div>
-<div class="line">-DBLACS_LIBRARY=<span class="stringliteral">&quot;/path/to/the/scalack/lib/libblacs.a&quot;</span></div>
-<div class="line">-DBLACS_INIT_LIBRARY=<span class="stringliteral">&quot;/path/to/the/scalack/lib/libblacsinit.a&quot;</span></div>
-</div><!-- fragment --><p> can be set manually.</p>
-<h2><a class="anchor" id="build_system_sources"></a>
-Sources</h2>
-<p>Cmake parses all the sources file to determine the proper source code level dependencies. The source is specified in the CMakeLists.txt file or source directory. When adding new files to be build, the appropiate CMakeLists.txt needs to be updated aswell. It is not necessary to rerun Cmake at this stage. Instead the build system will automatically detect the change and rerun the depenency generation.</p>
-<h1><a class="anchor" id="build_system_documentation"></a>
-Documentation</h1>
-<p>This documentation was generated using the <a href="http://www.stack.nl/~dimitri/doxygen/index.html">Doxygen</a> tool. If the doxygen tool is detected, and extra task is added to the make file. </p><div class="fragment"><div class="line">make doc</div>
-</div><!-- fragment --><p> More on the Doxygen generated documentation is avalable on the <a class="el" href="doxygen.html">Doxygen Documentation</a> page.</p>
-<h1><a class="anchor" id="build_system_testing"></a>
-Testing</h1>
-<p>Using CMake a testing frame work has been implmented. Tests maybe run by </p><div class="fragment"><div class="line">make test</div>
-</div><!-- fragment --><p> or by running </p><div class="fragment"><div class="line">ctest</div>
-</div><!-- fragment --><p> Individual or ranges of tests maybe run by using the <code>ctest -R &amp;ltregex&amp;gt</code> command. As an example to run all the tests for diagnostic rotation use the command </p><div class="fragment"><div class="line">ctest -R ^diagnostic_rotation</div>
-</div><!-- fragment --><p>Note that the executables need to be generated already and tests need to be configured. Typically tests should be run using the sequence of commands </p><div class="fragment"><div class="line">make</div>
-<div class="line">make test</div>
-</div><!-- fragment --><p> The results from tests and log file is found in Testing/Temporary.</p>
-<h1><a class="anchor" id="build_system_running"></a>
-Running Cmake</h1>
-<p>Cmake can be invoked manually using the command line or using the setup_cmake. This script, acts like the old setup script. It detects the current build machine and runs the appropiate cmake command line. Otherwise the cmake command may be invoked directly.</p>
-<p>Once the makefile has been generated, the cmake command never needs to be run again except to reconfigure a build variable. When a CMakeList.txt file is altered, the cmake command is rerun using cached values for the variables.</p>
-<h2><a class="anchor" id="build_system_cmake_variables"></a>
-Cmake Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Variable</code></td><td width="20%">Values</td><td width="60%">Discription</td></tr>
-</table>
-<h3><a class="anchor" id="build_system_cmake_variables_builtin"></a>
-Built In Variables</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>CMAKE_Fortran_COMPILER</code></td><td width="20%">Path</td><td width="60%">Path or command name for the fortran compiler. </td></tr>
-<tr>
-<td width="20%"><code>CMAKE_Fortran_FLAGS</code></td><td width="20%">String</td><td width="60%">Flags to pass to the fortran compiler. </td></tr>
-<tr>
-<td width="20%"><code>CMAKE_C_COMPILER</code></td><td width="20%">Path</td><td width="60%">Path or command name for the C compiler. While V3FIT and VMEC are all written in Fortran, some of the Cmake find packages use C compilers. </td></tr>
-<tr>
-<td width="20%"><code>CMAKE_CXX_COMPILER</code></td><td width="20%">Path</td><td width="60%">Path or command name for the C++ compiler. While V3FIT and VMEC are all written in Fortran, some of the Cmake find packages use C++ compilers. </td></tr>
-<tr>
-<td width="20%"><code>CMAKE_BUILD_TYPE</code></td><td width="20%">String<ul>
-<li>Release</li>
-<li>Debug</li>
-</ul>
-</td><td width="60%">Sets weither to generate build files for release or debug versions. </td></tr>
-<tr>
-<td width="20%"><code>CMAKE_PREFIX_PATH</code></td><td width="20%">Path</td><td width="60%">Paths to use when searching for libraries and executables. </td></tr>
-</table>
-<h3><a class="anchor" id="build_system_cmake_variables_defined"></a>
-Defined Variables</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>NETCDF_INC_PATH</code></td><td width="20%">Path</td><td width="60%">Path to the NetCDF include directory. </td></tr>
-<tr>
-<td width="20%"><code>NETCDF_LIB_PATH</code></td><td width="20%">Path</td><td width="60%">Path to the NetCDF include directory. </td></tr>
-<tr>
-<td width="20%"><code>EXTRA_FLAGS</code></td><td width="20%">String</td><td width="60%">Extra flags to pass to the compiler for all build modes. </td></tr>
-<tr>
-<td width="20%"><code>EXTRA_RELEASE_FLAGS</code></td><td width="20%">String</td><td width="60%">Extra flags to pass to the compiler for Release builds. </td></tr>
-<tr>
-<td width="20%"><code>EXTRA_DEBUG_FLAGS</code></td><td width="20%">String</td><td width="60%">Extra flags to pass to the compiler for Debug builds. </td></tr>
-<tr>
-<td width="20%"><code>USE_PROFILER</code></td><td width="20%">String<ul>
-<li>On</li>
-<li>Off</li>
-</ul>
-</td><td width="60%">Controls if code profiling is turned on or off. </td></tr>
-</table>
-<h1><a class="anchor" id="build_system_build_directory"></a>
-Build Directory</h1>
-<p>CMake is configured to generate all build products in the build directory. The build products can be found in the <code>_deps/<em>code</em>-build/x<em>code</em></code>. Optionally the tools can be installed using the </p><div class="fragment"><div class="line">make install</div>
-</div><!-- fragment --><p> command. Install location is controlled by the <code>CMAKE_INSTALL_PREFIX</code> variable.</p>
-<h1><a class="anchor" id="build_system_trouble_shooting"></a>
-Trouble Shooting</h1>
-<p>If problems are encountered with the build system it is recommened to first try a clean build. Clean builds may be generated by running </p><div class="fragment"><div class="line">make clean</div>
-<div class="line">make</div>
-</div><!-- fragment --><p> If problems persist, the command line arguments used to invoke the compiler and linker may be checked by running </p><div class="fragment"><div class="line">make VERBOSE=1</div>
-</div><!-- fragment --> </div></div><!-- contents -->
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-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">check_fields.f File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Utility to check fields written from mgrid.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a84ed33d7db6926e2e6376a5801e4d098"><td class="memItemLeft" align="right" valign="top"><a id="a84ed33d7db6926e2e6376a5801e4d098"></a>
-program&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#a84ed33d7db6926e2e6376a5801e4d098">check_fields</a></td></tr>
-<tr class="memdesc:a84ed33d7db6926e2e6376a5801e4d098"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks mgrid fields against analytic values. <br /></td></tr>
-<tr class="separator:a84ed33d7db6926e2e6376a5801e4d098"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa2a26c184daddc296e5e6ea6e14b34ab"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#aa2a26c184daddc296e5e6ea6e14b34ab">check_int</a> (ncid, name, value, error)</td></tr>
-<tr class="memdesc:aa2a26c184daddc296e5e6ea6e14b34ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">check an expected int value.  <a href="check__fields_8f.html#aa2a26c184daddc296e5e6ea6e14b34ab">More...</a><br /></td></tr>
-<tr class="separator:aa2a26c184daddc296e5e6ea6e14b34ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec5276a5985739dd1284f5349cd5eed6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#aec5276a5985739dd1284f5349cd5eed6">check_real</a> (ncid, name, value, tolarance, error)</td></tr>
-<tr class="memdesc:aec5276a5985739dd1284f5349cd5eed6"><td class="mdescLeft">&#160;</td><td class="mdescRight">check an expected real value.  <a href="check__fields_8f.html#aec5276a5985739dd1284f5349cd5eed6">More...</a><br /></td></tr>
-<tr class="separator:aec5276a5985739dd1284f5349cd5eed6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af7d437f81d652be77ce63280aae2eea0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#af7d437f81d652be77ce63280aae2eea0">check_real_2d</a> (ncid, name, value, tolarance, i, j, error)</td></tr>
-<tr class="memdesc:af7d437f81d652be77ce63280aae2eea0"><td class="mdescLeft">&#160;</td><td class="mdescRight">check an expected real value.  <a href="check__fields_8f.html#af7d437f81d652be77ce63280aae2eea0">More...</a><br /></td></tr>
-<tr class="separator:af7d437f81d652be77ce63280aae2eea0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a49dbae6ec2fad8a875819eab24663ba8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#a49dbae6ec2fad8a875819eab24663ba8">check_real_2d_all</a> (ncid, name, value, tolarance, error)</td></tr>
-<tr class="memdesc:a49dbae6ec2fad8a875819eab24663ba8"><td class="mdescLeft">&#160;</td><td class="mdescRight">check an expected real value.  <a href="check__fields_8f.html#a49dbae6ec2fad8a875819eab24663ba8">More...</a><br /></td></tr>
-<tr class="separator:a49dbae6ec2fad8a875819eab24663ba8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a57f68c4ea560a893232410040ccb91d7"><td class="memItemLeft" align="right" valign="top">real(dp) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="check__fields_8f.html#a57f68c4ea560a893232410040ccb91d7">bz_axis</a> (z)</td></tr>
-<tr class="memdesc:a57f68c4ea560a893232410040ccb91d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the field at a Z away from the center.  <a href="check__fields_8f.html#a57f68c4ea560a893232410040ccb91d7">More...</a><br /></td></tr>
-<tr class="separator:a57f68c4ea560a893232410040ccb91d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Utility to check fields written from mgrid. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a57f68c4ea560a893232410040ccb91d7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a57f68c4ea560a893232410040ccb91d7">&#9670;&nbsp;</a></span>bz_axis()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (dp) function bz_axis </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the field at a Z away from the center. </p>
-<p>The magnetic field at a point R=0, Z is given by</p>
-<p>B_z = mu0/2 R^2*I/(z^2 + R^2)^3/2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>NetCDF file reference. @erturns The B_z at point z. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa2a26c184daddc296e5e6ea6e14b34ab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa2a26c184daddc296e5e6ea6e14b34ab">&#9670;&nbsp;</a></span>check_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine check_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>check an expected int value. </p>
-<p>Checks an integer value for the expected result.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>NetCDF file reference. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">error</td><td>Current error condition. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aec5276a5985739dd1284f5349cd5eed6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aec5276a5985739dd1284f5349cd5eed6">&#9670;&nbsp;</a></span>check_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine check_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>tolarance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>check an expected real value. </p>
-<p>Checks an real value for the expected result with in the tolarance.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>NetCDF file reference. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tolarance</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">error</td><td>Current error condition. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af7d437f81d652be77ce63280aae2eea0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af7d437f81d652be77ce63280aae2eea0">&#9670;&nbsp;</a></span>check_real_2d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine check_real_2d </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>tolarance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>check an expected real value. </p>
-<p>Checks an real value for the expected result with in the tolarance.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>NetCDF file reference. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tolarance</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>R index value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>Z index value. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">error</td><td>Current error condition. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a49dbae6ec2fad8a875819eab24663ba8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a49dbae6ec2fad8a875819eab24663ba8">&#9670;&nbsp;</a></span>check_real_2d_all()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine check_real_2d_all </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>tolarance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>check an expected real value. </p>
-<p>Checks an real value for the expected result with in the tolarance at all index points.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>NetCDF file reference. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tolarance</td><td>Expected value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>R index value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>Z index value. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">error</td><td>Current error condition. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<div class="title">Command Line Arguments </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#cl_parsing_intro">Introduction</a></li>
-<li class="level1"><a href="#cl_parsing_arg_sec">Command Line Arguments</a></li>
-<li class="level1"><a href="#cl_pasring_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="cl_parsing_intro"></a>
-Introduction</h1>
-<p>This contains a description of the command line arguments. All arguments take the form of</p>
-<p><code>-arg=value</code></p>
-<p>If no <code>-arg=</code> is found, then the <code>-file</code> is implied. In other words, a command line of</p>
-<p><code>xv3fit input.file</code></p>
-<p>is the same as</p>
-<p><code>xv3fit -file=input.file</code></p>
-<h1><a class="anchor" id="cl_parsing_arg_sec"></a>
-Command Line Arguments</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Argument</code></td><td width="5%">Takes Value</td><td width="75%">Discription</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code><code>-h</code></code></td><td width="5%">N</td><td width="75%">Displays the help text and exits the program. </td></tr>
-<tr>
-<td width="20%"><code><code>-d</code></code></td><td width="5%">N</td><td width="75%">Use the default namelist input file. The default input filename is <code>v3fit.in</code>. </td></tr>
-<tr>
-<td width="20%"><code><code>-file</code></code></td><td width="5%">Y</td><td width="75%">Specify the v3fit namelist input file. </td></tr>
-<tr>
-<td width="20%"><code><code>-test</code></code></td><td width="5%">N</td><td width="75%">Overwrites the <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> variable and runs the internal unit tests instead. </td></tr>
-<tr>
-<td width="20%"><code><code>-force</code></code></td><td width="5%">N</td><td width="75%">Forces the equilibrium to re-solve on every reconstruction parameter </td></tr>
-<tr>
-<td width="20%"><code><code>-para</code></code></td><td width="5%">Y</td><td width="75%">Configures openmp parallelism. The value of this flag sets the maximum number of threads to use. A value of <code>-1</code> uses the default. </td></tr>
-<tr>
-<td width="20%"><code><code>-out</code></code></td><td width="5%">N</td><td width="75%">Writes out the input file for each reconstruction step. </td></tr>
-<tr>
-<td width="20%"><code><code>-c</code></code></td><td width="5%">Y</td><td width="75%">Compress magnetic response functions using the cutoff. </td></tr>
-<tr>
-<td width="20%"><code><code>-c_diff</code></code></td><td width="5%">N</td><td width="75%">Use central differencing to compute the Jacobian. </td></tr>
-<tr>
-<td width="20%"><code><code>-serial</code></code></td><td width="5%">N</td><td width="75%">Run the reconstruction serially and with parallel equilibria. </td></tr>
-<tr>
-<td width="20%"><code><code>-restart</code></code></td><td width="5%">Y</td><td width="75%"><p class="starttd">Specify v3fit to restart from the provided result file. Must have the last valid wout and/or siesta restart file.</p>
-<p class="endtd"></p>
-</td></tr>
-</table>
-<dl class="section note"><dt>Note</dt><dd>OpenMP and MPI support must be configured at compile time to use. A simple way to check if support has been included is to check the command line help <code>-h</code>.</dd></dl>
-<h1><a class="anchor" id="cl_pasring_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement command line parsing is found in the <a class="el" href="classcommandline__parser.html">commandline_parser</a> module. </p>
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-<div class="title">Class Anatomy </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#class_anatomy_intro">Introduction</a></li>
-<li class="level1"><a href="#class_anatomy_type">The Class Type</a><ul><li class="level2"><a href="#class_anatomy_subclassing">Subclassing</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#class_anatomy_methods">Methods</a><ul><li class="level2"><a href="#class_anatomy_virtual_methods">Virtual Methods</a></li>
-<li class="level2"><a href="#class_anatomy_constructers">Constructors</a><ul><li class="level3"><a href="#class_anatomy_constructers_subclass">Subclass Constructors</a></li>
-<li class="level3"><a href="#class_anatomy_constructers_copy">Copy Constructors</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#class_anatomy_destructers">Destructors</a></li>
-<li class="level2"><a href="#class_anatomy_setters">Setters</a></li>
-<li class="level2"><a href="#class_anatomy_getters">Getters</a></li>
-</ul>
-</li>
-</ul>
-</div>
-<div class="textblock"><p>Overview of the design of an object for V3FIT.</p>
-<h1><a class="anchor" id="class_anatomy_intro"></a>
-Introduction</h1>
-<p>This page provides an overview of the object oriented partterns used through out V3FIT. Older parts of the code use a different style than presented here. For consistency, any new coding should follow this design pattern.</p>
-<p>A class is a construct used to define a distinct type. A class is instantiated into instances of itself. A class containes members that define its state and behavior. The state is defined by the data members. The behavior is defined by the methods.</p>
-<p>Each class should be contained in it's own module. Methods, types and parameters associated with a class should be named with a prefix. </p><div class="fragment"><div class="line">example_class_...</div>
-</div><!-- fragment --><h1><a class="anchor" id="class_anatomy_type"></a>
-The Class Type</h1>
-<p>The data members are stored in an instance of a class object or more simply, an object. This contains all of the data members needed to hold the state of the class instance. Class objects are defined as a type using the module name </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  DERIVED-TYPE DECLARATIONS</span></div>
-<div class="line"><span class="comment">!  1) diagnostic base class</span></div>
-<div class="line"><span class="comment">!</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">TYPE</span> example_class</div>
-<div class="line">      <span class="keyword">END TYPE</span></div>
-</div><!-- fragment --><p>For creating arrays of these objects, it's also convienent to define a derived type containing a pointer. Again, these class object pointers are defined as a type using the module name </p><div class="fragment"><div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line">      <span class="keyword">TYPE</span> example_pointer</div>
-<div class="line">         <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">POINTER</span> :: p =&gt; null()</div>
-<div class="line">      <span class="keyword">END TYPE</span></div>
-</div><!-- fragment --><h2><a class="anchor" id="class_anatomy_subclassing"></a>
-Subclassing</h2>
-<p>Subclasses are classes that expand upon the behavior the general class behavior of the super class. V3FIT uses subclasses and class hierachy extensively to provide an abstract interface where implentation details specific to a class are hidden away from parts of the code that are not concerned with the specific details.</p>
-<p>To accomplish this generic interface, an instance of a subclass is stored inside an instance of the super class. This allows for the code to use a single generic type defined by the super class. A class that is subclassed, needs to define some parameters that store the type idenitifcation of the subclass instance. These parameters are defined as an integer with an ID number. An id of -1 is reserved for the instance of no subclass instance. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  diagnostic module parameters</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keywordtype">INTEGER</span>, <span class="keywordtype">PARAMETER</span> :: example_no_type = -1</div>
-<div class="line">      <span class="keywordtype">INTEGER</span>, <span class="keywordtype">PARAMETER</span> :: example_subclass_type = 0</div>
-<div class="line">      ...</div>
-</div><!-- fragment --><p>The super class stores the type ID and a pointer to subclass instance. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  DERIVED-TYPE DECLARATIONS</span></div>
-<div class="line"><span class="comment">!  1) diagnostic base class</span></div>
-<div class="line"><span class="comment">!</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">TYPE</span> example_class</div>
-<div class="line">         <span class="keywordtype">INTEGER</span>                           :: <span class="keywordtype">type</span> = example_no_type</div>
-<div class="line">         <span class="keywordtype">TYPE</span> (example_sub_class), <span class="keywordtype">POINTER</span> :: subclass =&gt; null()</div>
-<div class="line">      <span class="keyword">END TYPE</span></div>
-</div><!-- fragment --><h1><a class="anchor" id="class_anatomy_methods"></a>
-Methods</h1>
-<p>Methods define the behiavor of the class instance. In object oriented programming, there are two types of methods. Instance methods, define behavior that acts on or is affected by the state of specific class instance. These methods take a specific class instance as the first argument named this. The second method type are called class methods. These methods define behavior that is specific to a class by generic to an all instances of that class. These methods do not take a class instance as an argument. In general class methods are typically not used in V3FIT.</p>
-<h2><a class="anchor" id="class_anatomy_virtual_methods"></a>
-Virtual Methods</h2>
-<p>To create the generic interfaces that V3FIT uses when dealing with subclasses, the methods may be considered virtual. This means one of three things.</p><ul>
-<li>The super class contains no implmentation and an implenentation is left up to the subclass.</li>
-<li>The super class contains an implmentation and the subclass inherents that one.</li>
-<li>The super class contains an implmentation and the subclass overrides it.</li>
-</ul>
-<p>Because of this each method needs to check a subclass instance type first to decide the correct behavior. When using, the second method behavior, it is not necessary to define a method in the subclass module. </p><div class="fragment"><div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line"><span class="comment">!  The super class contains no implmentation and an implenentation is left up to</span></div>
-<div class="line"><span class="comment">!  the subclass.</span></div>
-<div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_method_1(this)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">INTEGER</span>                          :: example_method_1</div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">INTENT(in)</span> :: this</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keywordflow">SELECT CASE</span>(this%type)</div>
-<div class="line">         </div>
-<div class="line">         <span class="keywordflow">CASE</span> (example_subclass_type)</div>
-<div class="line">            example_method_1 = example_subclass_method_1(this%subclass)</div>
-<div class="line"> </div>
-<div class="line"><span class="keywordflow">         CASE DEFAULT</span></div>
-<div class="line">            assert(<span class="stringliteral">&#39;Expected subclass method.&#39;</span>)</div>
-<div class="line"> </div>
-<div class="line"><span class="keywordflow">      END SELECT</span></div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line"><span class="comment">!  The super class contains an implmentation and the subclass inherents that</span></div>
-<div class="line"><span class="comment">!  one.</span></div>
-<div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_method_2(this)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">INTEGER</span>                          :: example_method_2</div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">INTENT(in)</span> :: this</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keywordflow">SELECT CASE</span>(this%type)</div>
-<div class="line">         </div>
-<div class="line"><span class="keywordflow">         CASE DEFAULT</span></div>
-<div class="line">            example_method_2 = 0</div>
-<div class="line"> </div>
-<div class="line"><span class="keywordflow">      END SELECT</span></div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line"><span class="comment">!  The super class contains an implmentation and the subclass overrides it.</span></div>
-<div class="line"><span class="comment">!-------------------------------------------------------------------------------</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_method_3(this)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">INTEGER</span>                          :: example_method_3</div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">INTENT(in)</span> :: this</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keywordflow">SELECT CASE</span>(this%type)</div>
-<div class="line">         </div>
-<div class="line">         <span class="keywordflow">CASE</span> (example_subclass_type)</div>
-<div class="line">            example_method_3 = example_subclass_method_1(this%subclass)</div>
-<div class="line"> </div>
-<div class="line"><span class="keywordflow">         CASE DEFAULT</span></div>
-<div class="line">            example_method_3 = 0</div>
-<div class="line"> </div>
-<div class="line"><span class="keywordflow">      END SELECT</span></div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-</div><!-- fragment --><p>Note that the interger value stored in the type field of the class instance should never be compared with the integer number directly. Instead the type field should be compared against the defined parameters. This allows the interger number to be redefined without breating the expected behavior.</p>
-<h2><a class="anchor" id="class_anatomy_constructers"></a>
-Constructors</h2>
-<p>The job of a constructor is to allocate memory for a class object instance and initalize the members for the class. To allow the memory allocation to be encapsilated inside the constructor method, constructors are implemented as a function returning a pointer to the allocated and initalized object instance. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  CONSTRUCTION SUBROUTINES</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_class_construct()</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">POINTER</span> :: example_class_construct</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keyword">ALLOCATE</span>(example_class_construct)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-</div><!-- fragment --><h3><a class="anchor" id="class_anatomy_constructers_subclass"></a>
-Subclass Constructors</h3>
-<p>Subclassed objects are created by passing a subclass object instance as an argument of a super class constructor. The constructor method should be over loaded for each subclass instance. Since all constructors return a pointer, and subclasses are stored as pointers in the super class, the subclass object argument needs to be passed in as a pointer as well. This constructor is also responsible for setting the subclass type id. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  INTERFACE BLOCKS</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">INTERFACE</span> example_class_construct</div>
-<div class="line">         <span class="keyword">MODULE PROCEDURE</span> example_class_construct_subclass</div>
-<div class="line">      <span class="keyword">END INTERFACE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  CONSTRUCTION SUBROUTINES</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_class_construct_subclass(subclass_object)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">POINTER</span> :: example_class_construct_subclass</div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_sub_class), <span class="keywordtype">POINTER</span>, <span class="keywordtype">INTENT(in)</span> :: subclass_object</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keyword">ALLOCATE</span>(example_class_construct_subclass)</div>
-<div class="line">      example_class_construct_subclass%type = example_subclass_type</div>
-<div class="line">      example_class_construct_subclass%subclass =&gt; subclass_object</div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-</div><!-- fragment --><p> Implementing the constructors as functions stead of subroutines, allows the subclass constructor to be inlined directly as the argument to a super class constructor. </p><div class="fragment"><div class="line"> class_instance =&gt; example_class_construct(                               &amp;</div>
-<div class="line">&amp;                     example_subclass_construct())</div>
-</div><!-- fragment --><h3><a class="anchor" id="class_anatomy_constructers_copy"></a>
-Copy Constructors</h3>
-<p>Some times in may be necessary to create a second instance of the same object. Since the class objects here make extensive use of pointers, the default assignment operator will not duplicate a class. Instead a copy copy constructor should be used. A copy constructor is a constructor that takes an opject instance as a the only argument. The copy constructor, allocates memory for a new instance, then copies all the numbers to the member data. If the class contains subclasses, or other objects, these object should be copied by calling that classes copy constructor. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  INTERFACE BLOCKS</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">INTERFACE</span> example_class_construct</div>
-<div class="line">         <span class="keyword">MODULE PROCEDURE</span> example_class_construct_subclass,             <span class="comment">       &amp;</span></div>
-<div class="line"><span class="comment"></span>     &amp;                    example_class_construct_copy</div>
-<div class="line">      <span class="keyword">END INTERFACE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  CONSTRUCTION SUBROUTINES</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line">      <span class="keyword">FUNCTION </span>example_class_construct_copy(this)</div>
-<div class="line"> </div>
-<div class="line">      <span class="keywordtype">IMPLICIT NONE</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Declare Arguments</span></div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">POINTER</span> :: example_class_construct_copy</div>
-<div class="line">      <span class="keywordtype">TYPE</span> (example_class), <span class="keywordtype">POINTER</span>, <span class="keywordtype">INTENT(in)</span> :: this</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Start of executable code</span></div>
-<div class="line">      <span class="keyword">ALLOCATE</span>(example_class_construct_copy)</div>
-<div class="line">      example_class_construct_copy%type = this%type</div>
-<div class="line">      <span class="keywordflow">IF</span> (<span class="keyword">ASSOCIATED</span>(this%subclass)) <span class="keywordflow">THEN</span></div>
-<div class="line">         example_class_construct_copy%subclass =&gt;                       <span class="comment">       &amp;</span></div>
-<div class="line"><span class="comment"></span>     &amp;      example_subclass_construct(this%subclass)</div>
-<div class="line"><span class="keywordflow">      END IF</span></div>
-<div class="line"> </div>
-<div class="line">      <span class="keyword">END FUNCTION</span></div>
-</div><!-- fragment --><h2><a class="anchor" id="class_anatomy_destructers"></a>
-Destructors</h2>
-<p>Destructors perform the opposite function of constructors. These are reponsible for uninitializing the object and deallocating the associated memory. If a class instance contains, subclasses, or instances of other objects, the destructors for those classes instances need to be called from inside the destructor. Since destructors do not return anything, these are implimented as subroutines. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
-<div class="line"><span class="comment">!  DESTRUCTION SUBROUTINES</span></div>
-<div class="line"><span class="comment">!*******************************************************************************</span></div>
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-<p>Setters are used to set the value of a variable. A setter should be named <code>_set_variable</code> where variable is the name of the class variable to be set. Since setters typically do not return anything, these methods are implemented as subroutines. </p><div class="fragment"><div class="line"><span class="comment">!*******************************************************************************</span></div>
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-  <tr class="even"><td class="entry"><a class="el" href="classcommandline__parser.html#a61800ad900adb33e907e758118809e4b">commandline_parser</a>(const size_t argc, const char *argv[])</td><td class="entry"><a class="el" href="classcommandline__parser.html">commandline_parser</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-<p>A radial quantity.  
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-
-<p><code>#include &lt;<a class="el" href="commandline__parser_8hpp_source.html">commandline_parser.hpp</a>&gt;</code></p>
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-static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">help</a> ()</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcommandline__parser.html#ab193eb90b29602d2e4ec351107612bbd">commandline_parser_no_error</a> = 0</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcommandline__parser.html#af50230b3ef6b651d4cadae71a843eca1">commandline_parser_arg_not_found</a> = -1</td></tr>
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-<div class="textblock"><p>A radial quantity. </p>
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-<dl class="classindex odd">
-<dt class="alphachar"><a name="letter_R">R</a></dt>
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href="interfacepspline__calls_1_1r8bcspevxy.html">r8bcspevxy</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8bcspgrid.html">r8bcspgrid</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8bcspline.html">r8bcspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8bcspvec.html">r8bcspvec</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8bpsplinb.html">r8bpsplinb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8bpspline.html">r8bpspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8cspeval.html">r8cspeval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8cspevfn.html">r8cspevfn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8cspevx.html">r8cspevx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8cspline.html">r8cspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8cubsplb.html">r8cubsplb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8dnherm1.html">r8dnherm1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8dnherm2.html">r8dnherm2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8dnherm3.html">r8dnherm3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8evbicub.html">r8evbicub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8evintrp2d.html">r8evintrp2d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8evintrp3d.html">r8evintrp3d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8evspline.html">r8evspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8evtricub.html">r8evtricub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8f2test.html">r8f2test</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8f3test.html">r8f3test</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvbicub.html">r8fvbicub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvbicubx.html">r8fvbicubx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvintrp2d.html">r8fvintrp2d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvintrp3d.html">r8fvintrp3d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvspline.html">r8fvspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvtricub.html">r8fvtricub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8fvtricubx.html">r8fvtricubx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8genxpkg.html">r8genxpkg</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridbicub.html">r8gridbicub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridherm1.html">r8gridherm1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridherm2.html">r8gridherm2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridherm3.html">r8gridherm3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridintrp2d.html">r8gridintrp2d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridintrp3d.html">r8gridintrp3d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridpc1.html">r8gridpc1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridpc2.html">r8gridpc2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridpc3.html">r8gridpc3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridspline.html">r8gridspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8gridtricub.html">r8gridtricub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm1ev.html">r8herm1ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm1fcn.html">r8herm1fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm1x.html">r8herm1x</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm2ev.html">r8herm2ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm2fcn.html">r8herm2fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm2fcnx.html">r8herm2fcnx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm2xy.html">r8herm2xy</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm3ev.html">r8herm3ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm3fcn.html">r8herm3fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm3fcnx.html">r8herm3fcnx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8herm3xyz.html">r8herm3xyz</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkbicon.html">r8mkbicon</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkbicop.html">r8mkbicop</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkbicub.html">r8mkbicub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkbicubw.html">r8mkbicubw</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkherm1.html">r8mkherm1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkherm2.html">r8mkherm2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkherm3.html">r8mkherm3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkintrp2d.html">r8mkintrp2d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkintrp3d.html">r8mkintrp3d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl2p.html">r8mkspl2p</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl2pb.html">r8mkspl2pb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl2z.html">r8mkspl2z</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl2zb.html">r8mkspl2zb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl3pb.html">r8mkspl3pb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspl3zb.html">r8mkspl3zb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mkspline.html">r8mkspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mktricon.html">r8mktricon</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mktricop.html">r8mktricop</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mktricub.html">r8mktricub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8mktricubw.html">r8mktricubw</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8nspline.html">r8nspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc1ev.html">r8pc1ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc1fcn.html">r8pc1fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc2ev.html">r8pc2ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc2fcn.html">r8pc2fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc2fcnx.html">r8pc2fcnx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc3ev.html">r8pc3ev</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc3fcn.html">r8pc3fcn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pc3fcnx.html">r8pc3fcnx</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8pspline.html">r8pspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8seval.html">r8seval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8seval2.html">r8seval2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8seval3.html">r8seval3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8speval.html">r8speval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8spgrid.html">r8spgrid</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8splaan.html">r8splaan</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8splbrk.html">r8splbrk</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8spleen.html">r8spleen</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8splinck.html">r8splinck</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8spline.html">r8spline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8spvec.html">r8spvec</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcsp23.html">r8tcsp23</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspcorr.html">r8tcspcorr</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspeval.html">r8tcspeval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspevfn.html">r8tcspevfn</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspevxyz.html">r8tcspevxyz</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspgrid.html">r8tcspgrid</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspline.html">r8tcspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tcspvec.html">r8tcspvec</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tpsplinb.html">r8tpsplinb</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8tpspline.html">r8tpspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8util__bcherm1.html">r8util_bcherm1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8util__bcherm2.html">r8util_bcherm2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8util__bcherm3.html">r8util_bcherm3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8v__spline.html">r8v_spline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecbicub.html">r8vecbicub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecherm1.html">r8vecherm1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecherm2.html">r8vecherm2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecherm3.html">r8vecherm3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecintrp2d.html">r8vecintrp2d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecintrp3d.html">r8vecintrp3d</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecpc1.html">r8vecpc1</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecpc2.html">r8vecpc2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecpc3.html">r8vecpc3</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vecspline.html">r8vecspline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8vectricub.html">r8vectricub</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8xlookup.html">r8xlookup</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1r8zonfind.html">r8zonfind</a> (pspline_calls)</dd><dd><a class="el" href="classradial__quantity.html">radial_quantity</a></dd><dd><a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> (<a class="el" href="namespacereconstruction.html">reconstruction</a>)</dd><dd><a class="el" href="interfacereconstruction_1_1reconstruction__write__step.html">reconstruction_write_step</a> (<a class="el" href="namespacereconstruction.html">reconstruction</a>)</dd><dd><a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a> (<a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>)</dd></dl>
-<dl class="classindex even">
-<dt class="alphachar"><a name="letter_S">S</a></dt>
-<dd><a class="el" href="interfaceintegration__path__context_1_1search__function.html">search_function</a> (<a class="el" href="namespaceintegration__path__context.html">integration_path_context</a>)</dd><dd><a class="el" href="structintegration__path__context_1_1search__path__context__class.html">search_path_context_class</a> (<a class="el" href="namespaceintegration__path__context.html">integration_path_context</a>)</dd><dd><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> (<a class="el" href="namespaceutilities.html">utilities</a>)</dd><dd><a class="el" href="interfacepspline__calls_1_1seval.html">seval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1seval2.html">seval2</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1seval3.html">seval3</a> (pspline_calls)</dd><dd><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> (<a class="el" href="namespacesiesta__equilibrium.html">siesta_equilibrium</a>)</dd><dd><a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> (<a class="el" href="namespacesiesta__context.html">siesta_context</a>)</dd><dd><a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> (<a class="el" href="namespacesiesta__file.html">siesta_file</a>)</dd><dd><a class="el" href="classsiesta__fourier.html">siesta_fourier</a></dd><dd><a class="el" href="classsiesta__grid.html">siesta_grid</a></dd><dd><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></dd><dd><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> (<a class="el" href="namespacesiesta__run.html">siesta_run</a>)</dd><dd><a class="el" href="structsignal_1_1signal__class.html">signal_class</a> (<a class="el" href="namespacesignal.html">signal</a>)</dd><dd><a class="el" href="interfacesignal_1_1signal__construct.html">signal_construct</a> (<a class="el" href="namespacesignal.html">signal</a>)</dd><dd><a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> (<a class="el" href="namespacesignal__dot.html">signal_dot</a>)</dd><dd><a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a> (<a class="el" href="namespacesignal.html">signal</a>)</dd><dd><a class="el" href="structv3post__rfun_1_1signals.html">signals</a> (v3post_rfun)</dd><dd><a class="el" href="classsine.html">sine</a></dd><dd><a class="el" href="structblocktridiagonalsolver_1_1solutionelement.html">solutionelement</a> (<a class="el" href="namespaceblocktridiagonalsolver.html">blocktridiagonalsolver</a>)</dd><dd><a class="el" href="structblocktridiagonalsolver__bst_1_1solutionelement.html">solutionelement</a> (blocktridiagonalsolver_bst)</dd><dd><a class="el" href="interfacepspline__calls_1_1speval.html">speval</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1spgrid.html">spgrid</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1splaan.html">splaan</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1splbrk.html">splbrk</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1spleen.html">spleen</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1splinck.html">splinck</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1spline.html">spline</a> (pspline_calls)</dd><dd><a class="el" href="interfacepspline__calls_1_1spvec.html">spvec</a> (pspline_calls)</dd><dd><a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> (<a class="el" href="namespacesurface__commandline__parser.html">surface_commandline_parser</a>)</dd><dd><a class="el" 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href="namespacesxrem.html">sxrem</a>)</dd><dd><a class="el" href="interfacesystem__mod_1_1system.html">system</a> (system_mod)</dd></dl>
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-<dl class="classindex even">
-<dt class="alphachar"><a name="letter_W">W</a></dt>
-<dd><a class="el" href="interfacewrite__array__generic_1_1write__array.html">write_array</a> (write_array_generic)</dd><dd><a class="el" href="interfacevacfield__mod_1_1write__invac.html">write_invac</a> (vacfield_mod)</dd></dl>
-<dl class="classindex odd">
-<dt class="alphachar"><a name="letter_X">X</a></dt>
-<dd><a class="el" href="interfacepspline__calls_1_1xlookup.html">xlookup</a> (pspline_calls)</dd></dl>
-<dl class="classindex even">
-<dt class="alphachar"><a name="letter_Z">Z</a></dt>
-<dd><a class="el" href="interfacepspline__calls_1_1zonfind.html">zonfind</a> (pspline_calls)</dd></dl>
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-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-<div class="contents">
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-<p>This is the complete list of members for <a class="el" href="classfull__grid.html">full_grid</a>, including all inherited members.</p>
-<table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="classradial__quantity.html#aca1c6eacf0db3e569c66592603e2a83a">buffer</a></td><td class="entry"><a class="el" href="classradial__quantity.html">radial_quantity</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classradial__quantity.html#a23494e65793a9240e6028c41fbf65eb9">ds</a></td><td class="entry"><a class="el" href="classradial__quantity.html">radial_quantity</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classfull__grid.html#a4d17bf5e9e56a6fa7357e9a217a8958d">full_grid</a>(const std::vector&lt; double &gt; &amp;buffer)</td><td class="entry"><a class="el" href="classfull__grid.html">full_grid</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classfull__grid.html#aa3d55664d8058c6e15088050d260c28e">get</a>(const double s) const final</td><td class="entry"><a class="el" href="classfull__grid.html">full_grid</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classfull__grid.html#a4123df1c309c0e0e9d9e2c3fbf6c1e29">get_prime</a>() const</td><td class="entry"><a class="el" href="classfull__grid.html">full_grid</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classradial__quantity.html#a5978667b06806432f749db6b0543badf">radial_quantity</a>(const std::vector&lt; double &gt; &amp;buffer)</td><td class="entry"><a class="el" href="classradial__quantity.html">radial_quantity</a></td><td class="entry"></td></tr>
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diff --git a/html/classfull__grid.html b/html/classfull__grid.html
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- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
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-<div class="header">
-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
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-  <div class="headertitle">
-<div class="title">full_grid Class Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>A full grid quantity.  
- <a href="classfull__grid.html#details">More...</a></p>
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-<div class="dyncontent">
- <div class="center">
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-<tr class="memitem:a4123df1c309c0e0e9d9e2c3fbf6c1e29"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classhalf__grid.html">half_grid</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classfull__grid.html#a4123df1c309c0e0e9d9e2c3fbf6c1e29">get_prime</a> () const</td></tr>
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-<tr class="separator:a6e54cf5298b6363392039dac3831cf8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a43041375f30e58d82a14a28574048efa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="inherit_header pub_methods_classradial__quantity"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classradial__quantity')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classradial__quantity.html">radial_quantity</a></td></tr>
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-<p>Siesta radial quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol</td><td>Number of poloidal modes. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a56fce8779f974e68f57b5b19476484c5">&#9670;&nbsp;</a></span>get()</h2>
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-<p>Get a value at a radial s position. </p>
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-<p>Get a poloidal derivative at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Poloidal u position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Toroidal v position. </td></tr>
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-<p>Get a toroidal derivative at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Poloidal u position. </td></tr>
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-
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-<p>A radial siesta quantity.  
- <a href="classsiesta__grid.html#details">More...</a></p>
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-<p><code>#include &lt;<a class="el" href="grid__quantity_8hpp_source.html">grid_quantity.hpp</a>&gt;</code></p>
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-<tr class="separator:a5d795e69f829d45e4fb10d445c4e4945"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:adfee6673ce8a7f3b4b76f47ce5664c8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Siesta radial quantity.  <a href="classsiesta__grid.html#adfee6673ce8a7f3b4b76f47ce5664c8e">More...</a><br /></td></tr>
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-<tr class="memitem:abf2853edf8e6e7217d09c31b331495df"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__grid.html#abf2853edf8e6e7217d09c31b331495df">get</a> (const double s) const</td></tr>
-<tr class="memdesc:abf2853edf8e6e7217d09c31b331495df"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a value at a radial s position.  <a href="classsiesta__grid.html#abf2853edf8e6e7217d09c31b331495df">More...</a><br /></td></tr>
-<tr class="separator:abf2853edf8e6e7217d09c31b331495df"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a16344fde1af4f4869533d2201f2d5be5"><td class="memItemLeft" align="right" valign="top"><a id="a16344fde1af4f4869533d2201f2d5be5"></a>
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-<tr class="memdesc:a16344fde1af4f4869533d2201f2d5be5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial grid buffer. <br /></td></tr>
-<tr class="separator:a16344fde1af4f4869533d2201f2d5be5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><h3>template&lt;class GRID_CLASS&gt;<br />
-class siesta_grid&lt; GRID_CLASS &gt;</h3>
-
-<p>A radial siesta quantity. </p>
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-template&lt;class GRID_CLASS &gt; </div>
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-          <td>(</td>
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-          <td class="paramname"><em>grid</em></td><td>)</td>
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-<p>Siesta radial quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">grid</td><td>A radial grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<h2 class="groupheader">Member Function Documentation</h2>
-<a id="abf2853edf8e6e7217d09c31b331495df"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abf2853edf8e6e7217d09c31b331495df">&#9670;&nbsp;</a></span>get()</h2>
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-template&lt;class GRID_CLASS &gt; </div>
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-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
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-<p>Get a value at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial s position in the vmec grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The interpolated s position. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following file:<ul>
-<li>SIESTA/Testing/test_utilities/<a class="el" href="grid__quantity_8hpp_source.html">grid_quantity.hpp</a></li>
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-<div class="title">siesta_quantities Member List</div>  </div>
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-<p>This is the complete list of members for <a class="el" href="classsiesta__quantities.html">siesta_quantities</a>, including all inherited members.</p>
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-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#abab0a02a7435a0b074787dee97c08806">bsubs</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a776d9546f9f8e164506ba47bf41a9f7a">bsubu</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#ad9ad42f1c28773bcab1a48773b5a2a1b">bsubv</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ae0e2d19e8d57b34bceb17c4b8d2165e3">bsups</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a5fb4060d9f1fb5226c79d7cb003c4fc5">bsupu</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a6d46c1f2cc589a9a30cd2961396a9d16">chipf</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a247d54db419403cab2d04e88a50ec82e">djbsupsds</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a85bd2f9b008e7848087cc3c2abe9b516">drds</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a884adc0a6de033e5cb0c85a06e92658c">dzds</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#abeb99e354de5810056b408bdc3875361">get_bsubs</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#af8d6e03ad168a7ce35b4e5f788142b2a">get_bsubu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">get_bsubv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a26d37b454e3d1757149dcc5fb593430e">get_bsups</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ad279a13b1c34c7dd6f5f8be8259ff103">get_bsupu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#ac9c5a36d456734a82eb3117d8bff7b97">get_bsupv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a60b43e6e1883166b50382a819efae6ca">get_djbsups_ds</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a9f6ed9113b40f01e2f54e7f1bd2b68ff">get_djbsupv_dv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#af20735e0ec4d611ca6f29d01557f8dd8">get_dz_du</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#aea287b3f155627f9122915aa09264727">get_dz_dv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a12fa6cbc53cae3ca1a53d715e81b37ea">get_jacobian</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a6d47f0c817ee94e6054fa33b2ee2c53a">get_jbsups</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ae0e376d0ae7883344e0d53ad7fc393ff">get_jbsupu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#afd0d098b42ceb3b143ff7fba7b6def7b">get_jbsupv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a3839869c05da0ecf22125d26a29fc866">get_jksups</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a8a41e9027bcb2e6b7873d449f167b8f3">get_jksupu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a2d7eea2d822d40c9d2e826048fcfda09">get_jksupv</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#adc6157d34f8ed498ac7e76e5f05ab122">get_phipf</a>(const double s) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ab1fbd9a44f1bf55b859085d2ccf6a77d">get_pressure</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a8a3e9e3450432f9061ff1fb47a51efc8">get_r</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">get_r_prime</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#adf92d0015ead4b3a2b2af5e33b7359e2">get_test</a>(const double s) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">get_z</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a81d304fadf75b7010c4419bdd4530394">get_z_prime</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a72b431d872c372f0b29d1d19cf3068e3">jbsups</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a8406f584abe51291c6c1e267b67f8a9e">jbsupu</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ab349008782f9762d6a16bafa642be0a1">jbsupv</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#ac6c8d5a38be2b61f8a952eb53f1c9c01">jksups</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a6a4e7a1d6587314bced1b55f7c97502e">jksupu</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a2db2fae2b55c13698b036e0fe07d1e1d">jksupv</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ae417bbe4b74e6fb0596857d17ccca440">load</a>(const std::string &amp;restart_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a8d2f65174417a3ed72fe23f23bfc12c2">load_fourier</a>(const std::string &amp;restart_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">load_fourier_denorm</a>(const std::string &amp;restart_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a57c5b1a8292a333573eb22542299647a">load_scalar</a>(const std::string &amp;restart_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a292ea304c80d08766dfc3ac0852861da">make_full</a>()</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#afc38acc88e8722b07fd08c876c052627">p</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#ac93a1d131e62a5ce960446dc730eddfc">phipf</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">r</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a38fbfd9b3872ff213cdf8ec6a430b180">siesta_quantities</a>(const std::string &amp;restart_file)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">test_full</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a6b36ce3d5f1bdff79ff1a7f3cd0069af">to_prime</a>(const siesta_fourier&lt; full_grid, PARITY &gt; siesta)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">to_prime</a>(const siesta_fourier&lt; half_grid, PARITY &gt; siesta)</td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classsiesta__quantities.html#a556b5145f1ba0fbe902e5a81c2fd73ad">z</a></td><td class="entry"><a class="el" href="classsiesta__quantities.html">siesta_quantities</a></td><td class="entry"></td></tr>
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-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
-<a href="#pub-attribs">Public Attributes</a> &#124;
-<a href="classsiesta__quantities-members.html">List of all members</a>  </div>
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-
-<p>Siesta quantities.  
- <a href="classsiesta__quantities.html#details">More...</a></p>
-
-<p><code>#include &lt;<a class="el" href="siesta__quantities_8hpp_source.html">siesta_quantities.hpp</a>&gt;</code></p>
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-<tr class="separator:a38fbfd9b3872ff213cdf8ec6a430b180"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8a3e9e3450432f9061ff1fb47a51efc8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a8a3e9e3450432f9061ff1fb47a51efc8">get_r</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a8a3e9e3450432f9061ff1fb47a51efc8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get R quantity.  <a href="classsiesta__quantities.html#a8a3e9e3450432f9061ff1fb47a51efc8">More...</a><br /></td></tr>
-<tr class="separator:a8a3e9e3450432f9061ff1fb47a51efc8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e9b2b38d1edfff00a1d3f9e2dfbbfef"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">get_r_prime</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a1e9b2b38d1edfff00a1d3f9e2dfbbfef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get R' quantity.  <a href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">More...</a><br /></td></tr>
-<tr class="separator:a1e9b2b38d1edfff00a1d3f9e2dfbbfef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a482cd5fdfb0203f8ef8f24e47242ca2d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a482cd5fdfb0203f8ef8f24e47242ca2d">get_dr_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a482cd5fdfb0203f8ef8f24e47242ca2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dRdu quantity.  <a href="classsiesta__quantities.html#a482cd5fdfb0203f8ef8f24e47242ca2d">More...</a><br /></td></tr>
-<tr class="separator:a482cd5fdfb0203f8ef8f24e47242ca2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53a72705ab9d93719c560df5d9977994"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a53a72705ab9d93719c560df5d9977994">get_dr_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a53a72705ab9d93719c560df5d9977994"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dRdv quantity.  <a href="classsiesta__quantities.html#a53a72705ab9d93719c560df5d9977994">More...</a><br /></td></tr>
-<tr class="separator:a53a72705ab9d93719c560df5d9977994"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e66173f52bd4dc5ed0d9141bdc3a9ae"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">get_z</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a0e66173f52bd4dc5ed0d9141bdc3a9ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get Z quantity.  <a href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">More...</a><br /></td></tr>
-<tr class="separator:a0e66173f52bd4dc5ed0d9141bdc3a9ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a81d304fadf75b7010c4419bdd4530394"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a81d304fadf75b7010c4419bdd4530394">get_z_prime</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a81d304fadf75b7010c4419bdd4530394"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get Z' quantity.  <a href="classsiesta__quantities.html#a81d304fadf75b7010c4419bdd4530394">More...</a><br /></td></tr>
-<tr class="separator:a81d304fadf75b7010c4419bdd4530394"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af20735e0ec4d611ca6f29d01557f8dd8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#af20735e0ec4d611ca6f29d01557f8dd8">get_dz_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:af20735e0ec4d611ca6f29d01557f8dd8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dZdu quantity.  <a href="classsiesta__quantities.html#af20735e0ec4d611ca6f29d01557f8dd8">More...</a><br /></td></tr>
-<tr class="separator:af20735e0ec4d611ca6f29d01557f8dd8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea287b3f155627f9122915aa09264727"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#aea287b3f155627f9122915aa09264727">get_dz_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:aea287b3f155627f9122915aa09264727"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dZdv quantity.  <a href="classsiesta__quantities.html#aea287b3f155627f9122915aa09264727">More...</a><br /></td></tr>
-<tr class="separator:aea287b3f155627f9122915aa09264727"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adc6157d34f8ed498ac7e76e5f05ab122"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#adc6157d34f8ed498ac7e76e5f05ab122">get_phipf</a> (const double s) const</td></tr>
-<tr class="memdesc:adc6157d34f8ed498ac7e76e5f05ab122"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get phipf quantity.  <a href="classsiesta__quantities.html#adc6157d34f8ed498ac7e76e5f05ab122">More...</a><br /></td></tr>
-<tr class="separator:adc6157d34f8ed498ac7e76e5f05ab122"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75d7bef24419fa90067c88fc47be1562"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a75d7bef24419fa90067c88fc47be1562">get_chipf</a> (const double s) const</td></tr>
-<tr class="memdesc:a75d7bef24419fa90067c88fc47be1562"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get chipf quantity.  <a href="classsiesta__quantities.html#a75d7bef24419fa90067c88fc47be1562">More...</a><br /></td></tr>
-<tr class="separator:a75d7bef24419fa90067c88fc47be1562"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26d37b454e3d1757149dcc5fb593430e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a26d37b454e3d1757149dcc5fb593430e">get_bsups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a26d37b454e3d1757149dcc5fb593430e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsups quantity.  <a href="classsiesta__quantities.html#a26d37b454e3d1757149dcc5fb593430e">More...</a><br /></td></tr>
-<tr class="separator:a26d37b454e3d1757149dcc5fb593430e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad279a13b1c34c7dd6f5f8be8259ff103"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ad279a13b1c34c7dd6f5f8be8259ff103">get_bsupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ad279a13b1c34c7dd6f5f8be8259ff103"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsupu quantity.  <a href="classsiesta__quantities.html#ad279a13b1c34c7dd6f5f8be8259ff103">More...</a><br /></td></tr>
-<tr class="separator:ad279a13b1c34c7dd6f5f8be8259ff103"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac9c5a36d456734a82eb3117d8bff7b97"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ac9c5a36d456734a82eb3117d8bff7b97">get_bsupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ac9c5a36d456734a82eb3117d8bff7b97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsupv quantity.  <a href="classsiesta__quantities.html#ac9c5a36d456734a82eb3117d8bff7b97">More...</a><br /></td></tr>
-<tr class="separator:ac9c5a36d456734a82eb3117d8bff7b97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abeb99e354de5810056b408bdc3875361"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#abeb99e354de5810056b408bdc3875361">get_bsubs</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:abeb99e354de5810056b408bdc3875361"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubs quantity.  <a href="classsiesta__quantities.html#abeb99e354de5810056b408bdc3875361">More...</a><br /></td></tr>
-<tr class="separator:abeb99e354de5810056b408bdc3875361"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af8d6e03ad168a7ce35b4e5f788142b2a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#af8d6e03ad168a7ce35b4e5f788142b2a">get_bsubu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:af8d6e03ad168a7ce35b4e5f788142b2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubu quantity.  <a href="classsiesta__quantities.html#af8d6e03ad168a7ce35b4e5f788142b2a">More...</a><br /></td></tr>
-<tr class="separator:af8d6e03ad168a7ce35b4e5f788142b2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa194548bec488ea0b5e1a53b2caac47c"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">get_bsubv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:aa194548bec488ea0b5e1a53b2caac47c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubv quantity.  <a href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">More...</a><br /></td></tr>
-<tr class="separator:aa194548bec488ea0b5e1a53b2caac47c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3839869c05da0ecf22125d26a29fc866"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a3839869c05da0ecf22125d26a29fc866">get_jksups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a3839869c05da0ecf22125d26a29fc866"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksups quantity.  <a href="classsiesta__quantities.html#a3839869c05da0ecf22125d26a29fc866">More...</a><br /></td></tr>
-<tr class="separator:a3839869c05da0ecf22125d26a29fc866"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8a41e9027bcb2e6b7873d449f167b8f3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a8a41e9027bcb2e6b7873d449f167b8f3">get_jksupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a8a41e9027bcb2e6b7873d449f167b8f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksupu quantity.  <a href="classsiesta__quantities.html#a8a41e9027bcb2e6b7873d449f167b8f3">More...</a><br /></td></tr>
-<tr class="separator:a8a41e9027bcb2e6b7873d449f167b8f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2d7eea2d822d40c9d2e826048fcfda09"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a2d7eea2d822d40c9d2e826048fcfda09">get_jksupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a2d7eea2d822d40c9d2e826048fcfda09"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksupv quantity.  <a href="classsiesta__quantities.html#a2d7eea2d822d40c9d2e826048fcfda09">More...</a><br /></td></tr>
-<tr class="separator:a2d7eea2d822d40c9d2e826048fcfda09"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d47f0c817ee94e6054fa33b2ee2c53a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a6d47f0c817ee94e6054fa33b2ee2c53a">get_jbsups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a6d47f0c817ee94e6054fa33b2ee2c53a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsups quantity.  <a href="classsiesta__quantities.html#a6d47f0c817ee94e6054fa33b2ee2c53a">More...</a><br /></td></tr>
-<tr class="separator:a6d47f0c817ee94e6054fa33b2ee2c53a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0e376d0ae7883344e0d53ad7fc393ff"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ae0e376d0ae7883344e0d53ad7fc393ff">get_jbsupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ae0e376d0ae7883344e0d53ad7fc393ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsupu quantity.  <a href="classsiesta__quantities.html#ae0e376d0ae7883344e0d53ad7fc393ff">More...</a><br /></td></tr>
-<tr class="separator:ae0e376d0ae7883344e0d53ad7fc393ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd0d098b42ceb3b143ff7fba7b6def7b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#afd0d098b42ceb3b143ff7fba7b6def7b">get_jbsupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:afd0d098b42ceb3b143ff7fba7b6def7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsupv quantity.  <a href="classsiesta__quantities.html#afd0d098b42ceb3b143ff7fba7b6def7b">More...</a><br /></td></tr>
-<tr class="separator:afd0d098b42ceb3b143ff7fba7b6def7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a12fa6cbc53cae3ca1a53d715e81b37ea"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a12fa6cbc53cae3ca1a53d715e81b37ea">get_jacobian</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a12fa6cbc53cae3ca1a53d715e81b37ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jacobian.  <a href="classsiesta__quantities.html#a12fa6cbc53cae3ca1a53d715e81b37ea">More...</a><br /></td></tr>
-<tr class="separator:a12fa6cbc53cae3ca1a53d715e81b37ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af170653edec6c27fffa8ea045bc5b801"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#af170653edec6c27fffa8ea045bc5b801">get_curtor</a> () const</td></tr>
-<tr class="memdesc:af170653edec6c27fffa8ea045bc5b801"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get total toroidal current.  <a href="classsiesta__quantities.html#af170653edec6c27fffa8ea045bc5b801">More...</a><br /></td></tr>
-<tr class="separator:af170653edec6c27fffa8ea045bc5b801"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60b43e6e1883166b50382a819efae6ca"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a60b43e6e1883166b50382a819efae6ca">get_djbsups_ds</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a60b43e6e1883166b50382a819efae6ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get djbsupsds quantity.  <a href="classsiesta__quantities.html#a60b43e6e1883166b50382a819efae6ca">More...</a><br /></td></tr>
-<tr class="separator:a60b43e6e1883166b50382a819efae6ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebf2929d68e776a50c2887cdc46355cf"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#aebf2929d68e776a50c2887cdc46355cf">get_djbsupu_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:aebf2929d68e776a50c2887cdc46355cf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get djbsupudu quantity.  <a href="classsiesta__quantities.html#aebf2929d68e776a50c2887cdc46355cf">More...</a><br /></td></tr>
-<tr class="separator:aebf2929d68e776a50c2887cdc46355cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9f6ed9113b40f01e2f54e7f1bd2b68ff"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a9f6ed9113b40f01e2f54e7f1bd2b68ff">get_djbsupv_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a9f6ed9113b40f01e2f54e7f1bd2b68ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get djbsupvdv quantity.  <a href="classsiesta__quantities.html#a9f6ed9113b40f01e2f54e7f1bd2b68ff">More...</a><br /></td></tr>
-<tr class="separator:a9f6ed9113b40f01e2f54e7f1bd2b68ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a803c04dd5a597f8640e2c43e07afc10a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a803c04dd5a597f8640e2c43e07afc10a">get_divb</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a803c04dd5a597f8640e2c43e07afc10a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get divergence of B.  <a href="classsiesta__quantities.html#a803c04dd5a597f8640e2c43e07afc10a">More...</a><br /></td></tr>
-<tr class="separator:a803c04dd5a597f8640e2c43e07afc10a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab1fbd9a44f1bf55b859085d2ccf6a77d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ab1fbd9a44f1bf55b859085d2ccf6a77d">get_pressure</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ab1fbd9a44f1bf55b859085d2ccf6a77d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get pressure.  <a href="classsiesta__quantities.html#ab1fbd9a44f1bf55b859085d2ccf6a77d">More...</a><br /></td></tr>
-<tr class="separator:ab1fbd9a44f1bf55b859085d2ccf6a77d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adf92d0015ead4b3a2b2af5e33b7359e2"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#adf92d0015ead4b3a2b2af5e33b7359e2">get_test</a> (const double s) const</td></tr>
-<tr class="memdesc:adf92d0015ead4b3a2b2af5e33b7359e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get test quantity.  <a href="classsiesta__quantities.html#adf92d0015ead4b3a2b2af5e33b7359e2">More...</a><br /></td></tr>
-<tr class="separator:adf92d0015ead4b3a2b2af5e33b7359e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
-Static Public Member Functions</h2></td></tr>
-<tr class="memitem:a292ea304c80d08766dfc3ac0852861da"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a292ea304c80d08766dfc3ac0852861da">make_full</a> ()</td></tr>
-<tr class="memdesc:a292ea304c80d08766dfc3ac0852861da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to make a test quantity.  <a href="classsiesta__quantities.html#a292ea304c80d08766dfc3ac0852861da">More...</a><br /></td></tr>
-<tr class="separator:a292ea304c80d08766dfc3ac0852861da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae417bbe4b74e6fb0596857d17ccca440"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS &gt; </td></tr>
-<tr class="memitem:ae417bbe4b74e6fb0596857d17ccca440"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; GIRD_CLASS &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ae417bbe4b74e6fb0596857d17ccca440">load</a> (const std::string &amp;restart_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:ae417bbe4b74e6fb0596857d17ccca440"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a siesta quantity.  <a href="classsiesta__quantities.html#ae417bbe4b74e6fb0596857d17ccca440">More...</a><br /></td></tr>
-<tr class="separator:ae417bbe4b74e6fb0596857d17ccca440"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a57c5b1a8292a333573eb22542299647a"><td class="memItemLeft" align="right" valign="top">static double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a57c5b1a8292a333573eb22542299647a">load_scalar</a> (const std::string &amp;restart_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:a57c5b1a8292a333573eb22542299647a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a scalar siesta quantity.  <a href="classsiesta__quantities.html#a57c5b1a8292a333573eb22542299647a">More...</a><br /></td></tr>
-<tr class="separator:a57c5b1a8292a333573eb22542299647a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8d2f65174417a3ed72fe23f23bfc12c2"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS , class PARITY &gt; </td></tr>
-<tr class="memitem:a8d2f65174417a3ed72fe23f23bfc12c2"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; GIRD_CLASS, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a8d2f65174417a3ed72fe23f23bfc12c2">load_fourier</a> (const std::string &amp;restart_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:a8d2f65174417a3ed72fe23f23bfc12c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a fourier siesta quantity.  <a href="classsiesta__quantities.html#a8d2f65174417a3ed72fe23f23bfc12c2">More...</a><br /></td></tr>
-<tr class="separator:a8d2f65174417a3ed72fe23f23bfc12c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af9c5873c9e6ea3d4918745f21a08a6c3"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS , class PARITY &gt; </td></tr>
-<tr class="memitem:af9c5873c9e6ea3d4918745f21a08a6c3"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; GIRD_CLASS, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">load_fourier_denorm</a> (const std::string &amp;restart_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:af9c5873c9e6ea3d4918745f21a08a6c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a fourier denormalized siesta quantity.  <a href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">More...</a><br /></td></tr>
-<tr class="separator:af9c5873c9e6ea3d4918745f21a08a6c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b36ce3d5f1bdff79ff1a7f3cd0069af"><td class="memTemplParams" colspan="2">template&lt;class PARITY &gt; </td></tr>
-<tr class="memitem:a6b36ce3d5f1bdff79ff1a7f3cd0069af"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a6b36ce3d5f1bdff79ff1a7f3cd0069af">to_prime</a> (const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, PARITY &gt; <a class="el" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>)</td></tr>
-<tr class="memdesc:a6b36ce3d5f1bdff79ff1a7f3cd0069af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert full grid quantity to half grid primed.  <a href="classsiesta__quantities.html#a6b36ce3d5f1bdff79ff1a7f3cd0069af">More...</a><br /></td></tr>
-<tr class="separator:a6b36ce3d5f1bdff79ff1a7f3cd0069af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7b8b1c7e8af9d13ea6ff8216c6fac47"><td class="memTemplParams" colspan="2">template&lt;class PARITY &gt; </td></tr>
-<tr class="memitem:ab7b8b1c7e8af9d13ea6ff8216c6fac47"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">to_prime</a> (const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, PARITY &gt; <a class="el" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>)</td></tr>
-<tr class="memdesc:ab7b8b1c7e8af9d13ea6ff8216c6fac47"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert full grid quantity to half grid primed.  <a href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">More...</a><br /></td></tr>
-<tr class="separator:ab7b8b1c7e8af9d13ea6ff8216c6fac47"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
-Public Attributes</h2></td></tr>
-<tr class="memitem:afbb57375dccb0b630b5ff5c6d8317f10"><td class="memItemLeft" align="right" valign="top"><a id="afbb57375dccb0b630b5ff5c6d8317f10"></a>
-const <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">test_full</a></td></tr>
-<tr class="memdesc:afbb57375dccb0b630b5ff5c6d8317f10"><td class="mdescLeft">&#160;</td><td class="mdescRight">test function <br /></td></tr>
-<tr class="separator:afbb57375dccb0b630b5ff5c6d8317f10"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a379b44376a45be5641b81ae2eb7e119d"><td class="memItemLeft" align="right" valign="top"><a id="a379b44376a45be5641b81ae2eb7e119d"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">r</a></td></tr>
-<tr class="memdesc:a379b44376a45be5641b81ae2eb7e119d"><td class="mdescLeft">&#160;</td><td class="mdescRight">r <br /></td></tr>
-<tr class="separator:a379b44376a45be5641b81ae2eb7e119d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85bd2f9b008e7848087cc3c2abe9b516"><td class="memItemLeft" align="right" valign="top"><a id="a85bd2f9b008e7848087cc3c2abe9b516"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a85bd2f9b008e7848087cc3c2abe9b516">drds</a></td></tr>
-<tr class="memdesc:a85bd2f9b008e7848087cc3c2abe9b516"><td class="mdescLeft">&#160;</td><td class="mdescRight">drds <br /></td></tr>
-<tr class="separator:a85bd2f9b008e7848087cc3c2abe9b516"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a556b5145f1ba0fbe902e5a81c2fd73ad"><td class="memItemLeft" align="right" valign="top"><a id="a556b5145f1ba0fbe902e5a81c2fd73ad"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a556b5145f1ba0fbe902e5a81c2fd73ad">z</a></td></tr>
-<tr class="memdesc:a556b5145f1ba0fbe902e5a81c2fd73ad"><td class="mdescLeft">&#160;</td><td class="mdescRight">z <br /></td></tr>
-<tr class="separator:a556b5145f1ba0fbe902e5a81c2fd73ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a884adc0a6de033e5cb0c85a06e92658c"><td class="memItemLeft" align="right" valign="top"><a id="a884adc0a6de033e5cb0c85a06e92658c"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a884adc0a6de033e5cb0c85a06e92658c">dzds</a></td></tr>
-<tr class="memdesc:a884adc0a6de033e5cb0c85a06e92658c"><td class="mdescLeft">&#160;</td><td class="mdescRight">dzds <br /></td></tr>
-<tr class="separator:a884adc0a6de033e5cb0c85a06e92658c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-const <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ac93a1d131e62a5ce960446dc730eddfc">phipf</a></td></tr>
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-<tr class="memitem:a6d46c1f2cc589a9a30cd2961396a9d16"><td class="memItemLeft" align="right" valign="top"><a id="a6d46c1f2cc589a9a30cd2961396a9d16"></a>
-const <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a6d46c1f2cc589a9a30cd2961396a9d16">chipf</a></td></tr>
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-<tr class="separator:a6d46c1f2cc589a9a30cd2961396a9d16"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a72b431d872c372f0b29d1d19cf3068e3"><td class="memItemLeft" align="right" valign="top"><a id="a72b431d872c372f0b29d1d19cf3068e3"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a72b431d872c372f0b29d1d19cf3068e3">jbsups</a></td></tr>
-<tr class="memdesc:a72b431d872c372f0b29d1d19cf3068e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^s. <br /></td></tr>
-<tr class="separator:a72b431d872c372f0b29d1d19cf3068e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a247d54db419403cab2d04e88a50ec82e"><td class="memItemLeft" align="right" valign="top"><a id="a247d54db419403cab2d04e88a50ec82e"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a247d54db419403cab2d04e88a50ec82e">djbsupsds</a></td></tr>
-<tr class="memdesc:a247d54db419403cab2d04e88a50ec82e"><td class="mdescLeft">&#160;</td><td class="mdescRight">dJB^sds <br /></td></tr>
-<tr class="separator:a247d54db419403cab2d04e88a50ec82e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8406f584abe51291c6c1e267b67f8a9e"><td class="memItemLeft" align="right" valign="top"><a id="a8406f584abe51291c6c1e267b67f8a9e"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a8406f584abe51291c6c1e267b67f8a9e">jbsupu</a></td></tr>
-<tr class="memdesc:a8406f584abe51291c6c1e267b67f8a9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^u. <br /></td></tr>
-<tr class="separator:a8406f584abe51291c6c1e267b67f8a9e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab349008782f9762d6a16bafa642be0a1"><td class="memItemLeft" align="right" valign="top"><a id="ab349008782f9762d6a16bafa642be0a1"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ab349008782f9762d6a16bafa642be0a1">jbsupv</a></td></tr>
-<tr class="memdesc:ab349008782f9762d6a16bafa642be0a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^v. <br /></td></tr>
-<tr class="separator:ab349008782f9762d6a16bafa642be0a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0e2d19e8d57b34bceb17c4b8d2165e3"><td class="memItemLeft" align="right" valign="top"><a id="ae0e2d19e8d57b34bceb17c4b8d2165e3"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ae0e2d19e8d57b34bceb17c4b8d2165e3">bsups</a></td></tr>
-<tr class="memdesc:ae0e2d19e8d57b34bceb17c4b8d2165e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^s. <br /></td></tr>
-<tr class="separator:ae0e2d19e8d57b34bceb17c4b8d2165e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5fb4060d9f1fb5226c79d7cb003c4fc5"><td class="memItemLeft" align="right" valign="top"><a id="a5fb4060d9f1fb5226c79d7cb003c4fc5"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a5fb4060d9f1fb5226c79d7cb003c4fc5">bsupu</a></td></tr>
-<tr class="memdesc:a5fb4060d9f1fb5226c79d7cb003c4fc5"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^u. <br /></td></tr>
-<tr class="separator:a5fb4060d9f1fb5226c79d7cb003c4fc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6eb0268b64b0b8612649093a610ec0d4"><td class="memItemLeft" align="right" valign="top"><a id="a6eb0268b64b0b8612649093a610ec0d4"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a6eb0268b64b0b8612649093a610ec0d4">bsupv</a></td></tr>
-<tr class="memdesc:a6eb0268b64b0b8612649093a610ec0d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">JB^v. <br /></td></tr>
-<tr class="separator:a6eb0268b64b0b8612649093a610ec0d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abab0a02a7435a0b074787dee97c08806"><td class="memItemLeft" align="right" valign="top"><a id="abab0a02a7435a0b074787dee97c08806"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#abab0a02a7435a0b074787dee97c08806">bsubs</a></td></tr>
-<tr class="memdesc:abab0a02a7435a0b074787dee97c08806"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_s. <br /></td></tr>
-<tr class="separator:abab0a02a7435a0b074787dee97c08806"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a776d9546f9f8e164506ba47bf41a9f7a"><td class="memItemLeft" align="right" valign="top"><a id="a776d9546f9f8e164506ba47bf41a9f7a"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a776d9546f9f8e164506ba47bf41a9f7a">bsubu</a></td></tr>
-<tr class="memdesc:a776d9546f9f8e164506ba47bf41a9f7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_u. <br /></td></tr>
-<tr class="separator:a776d9546f9f8e164506ba47bf41a9f7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad9ad42f1c28773bcab1a48773b5a2a1b"><td class="memItemLeft" align="right" valign="top"><a id="ad9ad42f1c28773bcab1a48773b5a2a1b"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ad9ad42f1c28773bcab1a48773b5a2a1b">bsubv</a></td></tr>
-<tr class="memdesc:ad9ad42f1c28773bcab1a48773b5a2a1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_v. <br /></td></tr>
-<tr class="separator:ad9ad42f1c28773bcab1a48773b5a2a1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac6c8d5a38be2b61f8a952eb53f1c9c01"><td class="memItemLeft" align="right" valign="top"><a id="ac6c8d5a38be2b61f8a952eb53f1c9c01"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#ac6c8d5a38be2b61f8a952eb53f1c9c01">jksups</a></td></tr>
-<tr class="memdesc:ac6c8d5a38be2b61f8a952eb53f1c9c01"><td class="mdescLeft">&#160;</td><td class="mdescRight">JK^s. <br /></td></tr>
-<tr class="separator:ac6c8d5a38be2b61f8a952eb53f1c9c01"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6a4e7a1d6587314bced1b55f7c97502e"><td class="memItemLeft" align="right" valign="top"><a id="a6a4e7a1d6587314bced1b55f7c97502e"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a6a4e7a1d6587314bced1b55f7c97502e">jksupu</a></td></tr>
-<tr class="memdesc:a6a4e7a1d6587314bced1b55f7c97502e"><td class="mdescLeft">&#160;</td><td class="mdescRight">JK^u. <br /></td></tr>
-<tr class="separator:a6a4e7a1d6587314bced1b55f7c97502e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2db2fae2b55c13698b036e0fe07d1e1d"><td class="memItemLeft" align="right" valign="top"><a id="a2db2fae2b55c13698b036e0fe07d1e1d"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#a2db2fae2b55c13698b036e0fe07d1e1d">jksupv</a></td></tr>
-<tr class="memdesc:a2db2fae2b55c13698b036e0fe07d1e1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">JK^v. <br /></td></tr>
-<tr class="separator:a2db2fae2b55c13698b036e0fe07d1e1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeef3716a6b06587f469d8bcda4a5402a"><td class="memItemLeft" align="right" valign="top"><a id="aeef3716a6b06587f469d8bcda4a5402a"></a>
-const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#aeef3716a6b06587f469d8bcda4a5402a">curtor</a></td></tr>
-<tr class="memdesc:aeef3716a6b06587f469d8bcda4a5402a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total toroidal current. <br /></td></tr>
-<tr class="separator:aeef3716a6b06587f469d8bcda4a5402a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc38acc88e8722b07fd08c876c052627"><td class="memItemLeft" align="right" valign="top"><a id="afc38acc88e8722b07fd08c876c052627"></a>
-const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classsiesta__quantities.html#afc38acc88e8722b07fd08c876c052627">p</a></td></tr>
-<tr class="memdesc:afc38acc88e8722b07fd08c876c052627"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pressure. <br /></td></tr>
-<tr class="separator:afc38acc88e8722b07fd08c876c052627"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Siesta quantities. </p>
-<p>Class representing a quantities from siesta. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a38fbfd9b3872ff213cdf8ec6a430b180"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a38fbfd9b3872ff213cdf8ec6a430b180">&#9670;&nbsp;</a></span>siesta_quantities()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">siesta_quantities::siesta_quantities </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>restart_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Siesta quantities. </p>
-<p>For now this only supports symmetric cases only.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file</td><td>File name of a restart file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function Documentation</h2>
-<a id="abeb99e354de5810056b408bdc3875361"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abeb99e354de5810056b408bdc3875361">&#9670;&nbsp;</a></span>get_bsubs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsubs </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubs quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubs at the s,u,v position. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#af8d6e03ad168a7ce35b4e5f788142b2a">&#9670;&nbsp;</a></span>get_bsubu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsubu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="aa194548bec488ea0b5e1a53b2caac47c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa194548bec488ea0b5e1a53b2caac47c">&#9670;&nbsp;</a></span>get_bsubv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsubv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a26d37b454e3d1757149dcc5fb593430e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a26d37b454e3d1757149dcc5fb593430e">&#9670;&nbsp;</a></span>get_bsups()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ad279a13b1c34c7dd6f5f8be8259ff103"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad279a13b1c34c7dd6f5f8be8259ff103">&#9670;&nbsp;</a></span>get_bsupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ac9c5a36d456734a82eb3117d8bff7b97"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac9c5a36d456734a82eb3117d8bff7b97">&#9670;&nbsp;</a></span>get_bsupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_bsupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a75d7bef24419fa90067c88fc47be1562"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a75d7bef24419fa90067c88fc47be1562">&#9670;&nbsp;</a></span>get_chipf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_chipf </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get chipf quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>chipf at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="af170653edec6c27fffa8ea045bc5b801"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af170653edec6c27fffa8ea045bc5b801">&#9670;&nbsp;</a></span>get_curtor()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_curtor </td>
-          <td>(</td>
-          <td class="paramname"></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get total toroidal current. </p>
-<dl class="section return"><dt>Returns</dt><dd>The total toroidal current. </dd></dl>
-
-</div>
-</div>
-<a id="a803c04dd5a597f8640e2c43e07afc10a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a803c04dd5a597f8640e2c43e07afc10a">&#9670;&nbsp;</a></span>get_divb()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_divb </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get divergence of B. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Div B at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a60b43e6e1883166b50382a819efae6ca"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a60b43e6e1883166b50382a819efae6ca">&#9670;&nbsp;</a></span>get_djbsups_ds()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_djbsups_ds </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get djbsupsds quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>djbsupsds at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="aebf2929d68e776a50c2887cdc46355cf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aebf2929d68e776a50c2887cdc46355cf">&#9670;&nbsp;</a></span>get_djbsupu_du()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_djbsupu_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get djbsupudu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>djbsupudu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a9f6ed9113b40f01e2f54e7f1bd2b68ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9f6ed9113b40f01e2f54e7f1bd2b68ff">&#9670;&nbsp;</a></span>get_djbsupv_dv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_djbsupv_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get djbsupvdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>djbsupvdv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a482cd5fdfb0203f8ef8f24e47242ca2d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a482cd5fdfb0203f8ef8f24e47242ca2d">&#9670;&nbsp;</a></span>get_dr_du()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_dr_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dRdu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dRdu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a53a72705ab9d93719c560df5d9977994"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53a72705ab9d93719c560df5d9977994">&#9670;&nbsp;</a></span>get_dr_dv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_dr_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dRdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dRdv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="af20735e0ec4d611ca6f29d01557f8dd8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af20735e0ec4d611ca6f29d01557f8dd8">&#9670;&nbsp;</a></span>get_dz_du()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_dz_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dZdu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dZdu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="aea287b3f155627f9122915aa09264727"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aea287b3f155627f9122915aa09264727">&#9670;&nbsp;</a></span>get_dz_dv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_dz_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dZdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dZdv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a12fa6cbc53cae3ca1a53d715e81b37ea"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a12fa6cbc53cae3ca1a53d715e81b37ea">&#9670;&nbsp;</a></span>get_jacobian()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_jacobian </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jacobian. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jacobian at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a6d47f0c817ee94e6054fa33b2ee2c53a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6d47f0c817ee94e6054fa33b2ee2c53a">&#9670;&nbsp;</a></span>get_jbsups()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
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-          <td class="memname">double siesta_quantities::get_jbsups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ae0e376d0ae7883344e0d53ad7fc393ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae0e376d0ae7883344e0d53ad7fc393ff">&#9670;&nbsp;</a></span>get_jbsupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
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-          <td class="memname">double siesta_quantities::get_jbsupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="afd0d098b42ceb3b143ff7fba7b6def7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afd0d098b42ceb3b143ff7fba7b6def7b">&#9670;&nbsp;</a></span>get_jbsupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double siesta_quantities::get_jbsupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a3839869c05da0ecf22125d26a29fc866"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3839869c05da0ecf22125d26a29fc866">&#9670;&nbsp;</a></span>get_jksups()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double siesta_quantities::get_jksups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a8a41e9027bcb2e6b7873d449f167b8f3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8a41e9027bcb2e6b7873d449f167b8f3">&#9670;&nbsp;</a></span>get_jksupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_jksupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a2d7eea2d822d40c9d2e826048fcfda09"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2d7eea2d822d40c9d2e826048fcfda09">&#9670;&nbsp;</a></span>get_jksupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_jksupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="adc6157d34f8ed498ac7e76e5f05ab122"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adc6157d34f8ed498ac7e76e5f05ab122">&#9670;&nbsp;</a></span>get_phipf()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_phipf </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get phipf quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>phipf at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="ab1fbd9a44f1bf55b859085d2ccf6a77d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab1fbd9a44f1bf55b859085d2ccf6a77d">&#9670;&nbsp;</a></span>get_pressure()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">double siesta_quantities::get_pressure </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get pressure. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pressure at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a8a3e9e3450432f9061ff1fb47a51efc8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8a3e9e3450432f9061ff1fb47a51efc8">&#9670;&nbsp;</a></span>get_r()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double siesta_quantities::get_r </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get R quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>R at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a1e9b2b38d1edfff00a1d3f9e2dfbbfef"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">&#9670;&nbsp;</a></span>get_r_prime()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double siesta_quantities::get_r_prime </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get R' quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>R' at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="adf92d0015ead4b3a2b2af5e33b7359e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adf92d0015ead4b3a2b2af5e33b7359e2">&#9670;&nbsp;</a></span>get_test()</h2>
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-<div class="memitem">
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-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double siesta_quantities::get_test </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
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-</div><div class="memdoc">
-
-<p>Get test quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Test value at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="a0e66173f52bd4dc5ed0d9141bdc3a9ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0e66173f52bd4dc5ed0d9141bdc3a9ae">&#9670;&nbsp;</a></span>get_z()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double siesta_quantities::get_z </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get Z quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Z at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a81d304fadf75b7010c4419bdd4530394"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a81d304fadf75b7010c4419bdd4530394">&#9670;&nbsp;</a></span>get_z_prime()</h2>
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-<div class="memitem">
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-          <td class="memname">double siesta_quantities::get_z_prime </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get Z' quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>R' at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ae417bbe4b74e6fb0596857d17ccca440"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae417bbe4b74e6fb0596857d17ccca440">&#9670;&nbsp;</a></span>load()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;class GIRD_CLASS &gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt;GIRD_CLASS&gt; siesta_quantities::load </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>restart_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Factory method to load a siesta quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file</td><td>File name of a siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed siesta grid quantity. </dd></dl>
-
-</div>
-</div>
-<a id="a8d2f65174417a3ed72fe23f23bfc12c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8d2f65174417a3ed72fe23f23bfc12c2">&#9670;&nbsp;</a></span>load_fourier()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;class GIRD_CLASS , class PARITY &gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt;GIRD_CLASS, PARITY&gt; siesta_quantities::load_fourier </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>restart_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Factory method to load a fourier siesta quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file</td><td>File name of a siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed siesta fourier quantity. </dd></dl>
-
-</div>
-</div>
-<a id="af9c5873c9e6ea3d4918745f21a08a6c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af9c5873c9e6ea3d4918745f21a08a6c3">&#9670;&nbsp;</a></span>load_fourier_denorm()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;class GIRD_CLASS , class PARITY &gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt;GIRD_CLASS, PARITY&gt; siesta_quantities::load_fourier_denorm </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>restart_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Factory method to load a fourier denormalized siesta quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file</td><td>File name of a siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed denormalized siesta fourier quantity. </dd></dl>
-
-</div>
-</div>
-<a id="a57c5b1a8292a333573eb22542299647a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a57c5b1a8292a333573eb22542299647a">&#9670;&nbsp;</a></span>load_scalar()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static double siesta_quantities::load_scalar </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>restart_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Factory method to load a scalar siesta quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file</td><td>File name of a siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed scalar quantity. </dd></dl>
-
-</div>
-</div>
-<a id="a292ea304c80d08766dfc3ac0852861da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a292ea304c80d08766dfc3ac0852861da">&#9670;&nbsp;</a></span>make_full()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt;<a class="el" href="classfull__grid.html">full_grid</a>&gt; siesta_quantities::make_full </td>
-          <td>(</td>
-          <td class="paramname"></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Factory method to make a test quantity. </p>
-<dl class="section return"><dt>Returns</dt><dd>A constructed test quantity. </dd></dl>
-
-</div>
-</div>
-<a id="a6b36ce3d5f1bdff79ff1a7f3cd0069af"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6b36ce3d5f1bdff79ff1a7f3cd0069af">&#9670;&nbsp;</a></span>to_prime() <span class="overload">[1/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;class PARITY &gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt;<a class="el" href="classhalf__grid.html">half_grid</a>, PARITY&gt; siesta_quantities::to_prime </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, PARITY &gt;&#160;</td>
-          <td class="paramname"><em>siesta</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Convert full grid quantity to half grid primed. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta</td><td>A full grid siesta quantity to take the derivative of. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A half grid derivative. </dd></dl>
-
-</div>
-</div>
-<a id="ab7b8b1c7e8af9d13ea6ff8216c6fac47"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab7b8b1c7e8af9d13ea6ff8216c6fac47">&#9670;&nbsp;</a></span>to_prime() <span class="overload">[2/2]</span></h2>
-
-<div class="memitem">
-<div class="memproto">
-<div class="memtemplate">
-template&lt;class PARITY &gt; </div>
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">static <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt;<a class="el" href="classfull__grid.html">full_grid</a>, PARITY&gt; siesta_quantities::to_prime </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classsiesta__fourier.html">siesta_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, PARITY &gt;&#160;</td>
-          <td class="paramname"><em>siesta</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Convert full grid quantity to half grid primed. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta</td><td>A full grid siesta quantity to take the derivative of. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A full grid derivative. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following file:<ul>
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-<p>A vector.  
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-<tr class="memitem:a7b392ac9ba031e28fca3c11f4b8b26b4"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvector3d.html#a7b392ac9ba031e28fca3c11f4b8b26b4">length</a> () const</td></tr>
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-<tr class="separator:a9a6ae4bece405d27680479007f4d179d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a9a6ae4bece405d27680479007f4d179d">&#9670;&nbsp;</a></span>cross_product()</h2>
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-<p>Takes the cross product of two vectors. </p>
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-<dl class="params"><dt>Parameters</dt><dd>
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-<p>Takes the doc product of two vectors. </p>
-<p>V1 . V2.</p>
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-  <tr class="even"><td class="entry"><a class="el" href="classvertex.html#abab94d96ac92d414048e98852132f198">get_normal</a>(const vertex &amp;v1, const vertex &amp;v2, const vertex &amp;v3)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvertex.html#aff5a66ce6e401e15c0930f46b3504d9c">in_range</a>(const vertex &amp;v1, const vertex &amp;v2, const double x, const double y)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvertex.html#a8d368223f0d8936815bcaf5b51721690">insert</a>(vertex *v)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvertex.html#a239ccff8c5a25f711bde2b3860695147">length</a>(const vertex &amp;v1, const vertex &amp;v2, const vector3d &amp;p)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvertex.html#aea8b16f8d6cc4f625318fad2adf661c1">length</a>(const vertex &amp;v, const vector3d &amp;p)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvertex.html#a2d3832ef9911a456e10e072800092d33">print</a>(vertex *start)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvertex.html#a2f65aaaa016fc0c9f4c950b3f60e30b9">vertex</a>(const vector3d point_)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classvertex.html#a907418f975a720701172332ca8a6afbd">y_min</a>(const vertex &amp;v1, const vertex &amp;v2, const vector3d &amp;p)</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvertex.html#a15e4da37f717a60c6d87096197910c36">~vertex</a>()</td><td class="entry"><a class="el" href="classvertex.html">vertex</a></td><td class="entry"></td></tr>
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-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
-<a href="classvertex-members.html">List of all members</a>  </div>
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-
-<p>A vertex.  
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-
-<p><code>#include &lt;<a class="el" href="vertex_8hpp_source.html">vertex.hpp</a>&gt;</code></p>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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-<tr class="memitem:a2f65aaaa016fc0c9f4c950b3f60e30b9"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a2f65aaaa016fc0c9f4c950b3f60e30b9">vertex</a> (const <a class="el" href="classvector3d.html">vector3d</a> point_)</td></tr>
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-<tr class="separator:a2f65aaaa016fc0c9f4c950b3f60e30b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15e4da37f717a60c6d87096197910c36"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a15e4da37f717a60c6d87096197910c36">~vertex</a> ()</td></tr>
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-<tr class="separator:a15e4da37f717a60c6d87096197910c36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8d368223f0d8936815bcaf5b51721690"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a8d368223f0d8936815bcaf5b51721690">insert</a> (<a class="el" href="classvertex.html">vertex</a> *v)</td></tr>
-<tr class="memdesc:a8d368223f0d8936815bcaf5b51721690"><td class="mdescLeft">&#160;</td><td class="mdescRight">Insert a new <a class="el" href="classvertex.html">vertex</a>.  <a href="classvertex.html#a8d368223f0d8936815bcaf5b51721690">More...</a><br /></td></tr>
-<tr class="separator:a8d368223f0d8936815bcaf5b51721690"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
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-<tr class="memitem:ad670e51054c56741113b987884dc3948"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classvector3d.html">vector3d</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#ad670e51054c56741113b987884dc3948">get_normal</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2)</td></tr>
-<tr class="memdesc:ad670e51054c56741113b987884dc3948"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normal to a line.  <a href="classvertex.html#ad670e51054c56741113b987884dc3948">More...</a><br /></td></tr>
-<tr class="separator:ad670e51054c56741113b987884dc3948"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abab94d96ac92d414048e98852132f198"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classvector3d.html">vector3d</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#abab94d96ac92d414048e98852132f198">get_normal</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2, const <a class="el" href="classvertex.html">vertex</a> &amp;v3)</td></tr>
-<tr class="memdesc:abab94d96ac92d414048e98852132f198"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normal to a line.  <a href="classvertex.html#abab94d96ac92d414048e98852132f198">More...</a><br /></td></tr>
-<tr class="separator:abab94d96ac92d414048e98852132f198"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af86878566336fd82a8edb8af6de6a5df"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#af86878566336fd82a8edb8af6de6a5df">a</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2)</td></tr>
-<tr class="memdesc:af86878566336fd82a8edb8af6de6a5df"><td class="mdescLeft">&#160;</td><td class="mdescRight">a coefficient.  <a href="classvertex.html#af86878566336fd82a8edb8af6de6a5df">More...</a><br /></td></tr>
-<tr class="separator:af86878566336fd82a8edb8af6de6a5df"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08acd824a0f0e30ad46faec5fbf3de7e"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a08acd824a0f0e30ad46faec5fbf3de7e">b</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2)</td></tr>
-<tr class="memdesc:a08acd824a0f0e30ad46faec5fbf3de7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">b coefficient.  <a href="classvertex.html#a08acd824a0f0e30ad46faec5fbf3de7e">More...</a><br /></td></tr>
-<tr class="separator:a08acd824a0f0e30ad46faec5fbf3de7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa5a54ac2f596da1a98f9f221f7faa8d8"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#aa5a54ac2f596da1a98f9f221f7faa8d8">c</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2)</td></tr>
-<tr class="memdesc:aa5a54ac2f596da1a98f9f221f7faa8d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">c coefficient.  <a href="classvertex.html#aa5a54ac2f596da1a98f9f221f7faa8d8">More...</a><br /></td></tr>
-<tr class="separator:aa5a54ac2f596da1a98f9f221f7faa8d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a908da11b1c6fdaf0f8c33bd8e886bb58"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a908da11b1c6fdaf0f8c33bd8e886bb58">x_min</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p)</td></tr>
-<tr class="memdesc:a908da11b1c6fdaf0f8c33bd8e886bb58"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum distance in the x direction.  <a href="classvertex.html#a908da11b1c6fdaf0f8c33bd8e886bb58">More...</a><br /></td></tr>
-<tr class="separator:a908da11b1c6fdaf0f8c33bd8e886bb58"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a907418f975a720701172332ca8a6afbd"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a907418f975a720701172332ca8a6afbd">y_min</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p)</td></tr>
-<tr class="memdesc:a907418f975a720701172332ca8a6afbd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum distance in the y direction.  <a href="classvertex.html#a907418f975a720701172332ca8a6afbd">More...</a><br /></td></tr>
-<tr class="separator:a907418f975a720701172332ca8a6afbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a239ccff8c5a25f711bde2b3860695147"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a239ccff8c5a25f711bde2b3860695147">length</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p)</td></tr>
-<tr class="memdesc:a239ccff8c5a25f711bde2b3860695147"><td class="mdescLeft">&#160;</td><td class="mdescRight">Distance to a limiter face.  <a href="classvertex.html#a239ccff8c5a25f711bde2b3860695147">More...</a><br /></td></tr>
-<tr class="separator:a239ccff8c5a25f711bde2b3860695147"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea8b16f8d6cc4f625318fad2adf661c1"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#aea8b16f8d6cc4f625318fad2adf661c1">length</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p)</td></tr>
-<tr class="memdesc:aea8b16f8d6cc4f625318fad2adf661c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Distance to a vertex.  <a href="classvertex.html#aea8b16f8d6cc4f625318fad2adf661c1">More...</a><br /></td></tr>
-<tr class="separator:aea8b16f8d6cc4f625318fad2adf661c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff5a66ce6e401e15c0930f46b3504d9c"><td class="memItemLeft" align="right" valign="top">static const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#aff5a66ce6e401e15c0930f46b3504d9c">in_range</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v1, const <a class="el" href="classvertex.html">vertex</a> &amp;v2, const double x, const double y)</td></tr>
-<tr class="memdesc:aff5a66ce6e401e15c0930f46b3504d9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finds if the line to the point is in range.  <a href="classvertex.html#aff5a66ce6e401e15c0930f46b3504d9c">More...</a><br /></td></tr>
-<tr class="separator:aff5a66ce6e401e15c0930f46b3504d9c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4d336ff7ddbbf641a62ed14eeabca57a"><td class="memItemLeft" align="right" valign="top">static const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a4d336ff7ddbbf641a62ed14eeabca57a">direction</a> (const <a class="el" href="classvertex.html">vertex</a> &amp;v, const <a class="el" href="classvector3d.html">vector3d</a> &amp;n, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p)</td></tr>
-<tr class="memdesc:a4d336ff7ddbbf641a62ed14eeabca57a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finds which side of the limiter face the point is on.  <a href="classvertex.html#a4d336ff7ddbbf641a62ed14eeabca57a">More...</a><br /></td></tr>
-<tr class="separator:a4d336ff7ddbbf641a62ed14eeabca57a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aae36ee47387da49f3e9ff97dac66aa83"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#aae36ee47387da49f3e9ff97dac66aa83">distance</a> (<a class="el" href="classvertex.html">vertex</a> *start, const <a class="el" href="classvector3d.html">vector3d</a> &amp;p, std::vector&lt; double &gt; &amp;d)</td></tr>
-<tr class="memdesc:aae36ee47387da49f3e9ff97dac66aa83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Find the distances to the limiter.  <a href="classvertex.html#aae36ee47387da49f3e9ff97dac66aa83">More...</a><br /></td></tr>
-<tr class="separator:aae36ee47387da49f3e9ff97dac66aa83"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2d3832ef9911a456e10e072800092d33"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvertex.html#a2d3832ef9911a456e10e072800092d33">print</a> (<a class="el" href="classvertex.html">vertex</a> *start)</td></tr>
-<tr class="memdesc:a2d3832ef9911a456e10e072800092d33"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out all vertices.  <a href="classvertex.html#a2d3832ef9911a456e10e072800092d33">More...</a><br /></td></tr>
-<tr class="separator:a2d3832ef9911a456e10e072800092d33"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>A vertex. </p>
-<p>Class representing a vertex. Verticies are doublely linked lists containing the current vector position. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a2f65aaaa016fc0c9f4c950b3f60e30b9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f65aaaa016fc0c9f4c950b3f60e30b9">&#9670;&nbsp;</a></span>vertex()</h2>
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-          <td class="memname">vertex::vertex </td>
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-          <td class="paramname"><em>point_</em></td><td>)</td>
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">point_</td><td>Current point to the vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a15e4da37f717a60c6d87096197910c36"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a15e4da37f717a60c6d87096197910c36">&#9670;&nbsp;</a></span>~vertex()</h2>
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-<div class="memitem">
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-          <td class="memname">vertex::~vertex </td>
-          <td>(</td>
-          <td class="paramname"></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p><a class="el" href="classvertex.html">vertex</a> destructor. </p>
-<p>Destructs the current vertext and calls the destructor on the next vertex if it exists. </p>
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-</div>
-</div>
-<h2 class="groupheader">Member Function Documentation</h2>
-<a id="af86878566336fd82a8edb8af6de6a5df"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af86878566336fd82a8edb8af6de6a5df">&#9670;&nbsp;</a></span>a()</h2>
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-<div class="memitem">
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-          <td class="memname">const double vertex::a </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-</div><div class="memdoc">
-
-<p>a coefficient. </p>
-<p>Coefficient to find used to find the distance from a point to a line.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The a coefficient </dd></dl>
-
-</div>
-</div>
-<a id="a08acd824a0f0e30ad46faec5fbf3de7e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a08acd824a0f0e30ad46faec5fbf3de7e">&#9670;&nbsp;</a></span>b()</h2>
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-          <td class="memname">const double vertex::b </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
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-</div><div class="memdoc">
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-<p>b coefficient. </p>
-<p>Coefficient to find used to find the distance from a point to a line.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The b coefficient </dd></dl>
-
-</div>
-</div>
-<a id="aa5a54ac2f596da1a98f9f221f7faa8d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa5a54ac2f596da1a98f9f221f7faa8d8">&#9670;&nbsp;</a></span>c()</h2>
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-          <td class="memname">const double vertex::c </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-<p>c coefficient. </p>
-<p>Coefficient to find used to find the distance from a point to a line.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The c coefficient </dd></dl>
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-</div>
-</div>
-<a id="a4d336ff7ddbbf641a62ed14eeabca57a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4d336ff7ddbbf641a62ed14eeabca57a">&#9670;&nbsp;</a></span>direction()</h2>
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-          <td class="memname">const double vertex::direction </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvector3d.html">vector3d</a> &amp;&#160;</td>
-          <td class="paramname"><em>n</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvector3d.html">vector3d</a> &amp;&#160;</td>
-          <td class="paramname"><em>p</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-<span class="mlabels"><span class="mlabel">static</span></span>  </td>
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-<p>Finds which side of the limiter face the point is on. </p>
-<p>A point is in range when the line normal to the limiter face that intersects the point is between the two verticies.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>Vector normal to the vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Point of interest. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The length to a from a point to the line. </dd></dl>
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-</div>
-</div>
-<a id="aae36ee47387da49f3e9ff97dac66aa83"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aae36ee47387da49f3e9ff97dac66aa83">&#9670;&nbsp;</a></span>distance()</h2>
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-<div class="memitem">
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-          <td class="memname">void vertex::distance </td>
-          <td>(</td>
-          <td class="paramtype"><a class="el" href="classvertex.html">vertex</a> *&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvector3d.html">vector3d</a> &amp;&#160;</td>
-          <td class="paramname"><em>p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">std::vector&lt; double &gt; &amp;&#160;</td>
-          <td class="paramname"><em>d</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-<p>Find the distances to the limiter. </p>
-<p>Find the minimum distance to reach in range limiter face and joint between limiter faces.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Inital vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Point of interest. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">d</td><td>Minimum distances to the limiter face. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad670e51054c56741113b987884dc3948"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad670e51054c56741113b987884dc3948">&#9670;&nbsp;</a></span>get_normal() <span class="overload">[1/2]</span></h2>
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-<div class="memitem">
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-          <td class="memname">const <a class="el" href="classvector3d.html">vector3d</a> vertex::get_normal </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">static</span></span>  </td>
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-<p>Normal to a line. </p>
-<p>Gets the normal to a line defined by two verices.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The normal at a face. </dd></dl>
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-</div>
-</div>
-<a id="abab94d96ac92d414048e98852132f198"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abab94d96ac92d414048e98852132f198">&#9670;&nbsp;</a></span>get_normal() <span class="overload">[2/2]</span></h2>
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-          <td class="memname">const <a class="el" href="classvector3d.html">vector3d</a> vertex::get_normal </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v3</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-<p>Normal to a line. </p>
-<p>Normal to a line defined by the intersection of two lines. This is the average of the normals of the two lines.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v3</td><td>Third vertex. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The normal at a corner. </dd></dl>
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-</div>
-</div>
-<a id="aff5a66ce6e401e15c0930f46b3504d9c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aff5a66ce6e401e15c0930f46b3504d9c">&#9670;&nbsp;</a></span>in_range()</h2>
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-<div class="memitem">
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-          <td class="memname">const bool vertex::in_range </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>y</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-<p>Finds if the line to the point is in range. </p>
-<p>A point is in range when the line normal to the limiter face that intersects the point is between the two verticies.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v1</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v2</td><td>Second vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>X position of the point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y</td><td>Y position of the point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The length to a from a point to the line. </dd></dl>
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-</div>
-</div>
-<a id="a8d368223f0d8936815bcaf5b51721690"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8d368223f0d8936815bcaf5b51721690">&#9670;&nbsp;</a></span>insert()</h2>
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-<div class="memitem">
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-          <td class="memname">void vertex::insert </td>
-          <td>(</td>
-          <td class="paramtype"><a class="el" href="classvertex.html">vertex</a> *&#160;</td>
-          <td class="paramname"><em>v</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Insert a new <a class="el" href="classvertex.html">vertex</a>. </p>
-<p>Inserts a new vertex between the current instance the next instance. </p>
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-</div>
-</div>
-<a id="aea8b16f8d6cc4f625318fad2adf661c1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aea8b16f8d6cc4f625318fad2adf661c1">&#9670;&nbsp;</a></span>length() <span class="overload">[1/2]</span></h2>
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-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvector3d.html">vector3d</a> &amp;&#160;</td>
-          <td class="paramname"><em>p</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
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-<span class="mlabels"><span class="mlabel">static</span></span>  </td>
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-</table>
-</div><div class="memdoc">
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-<p>Distance to a vertex. </p>
-<p>The length of a line from a point to the vertex.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>First vertex. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Point of interest. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The length to a from a point to the line. </dd></dl>
-
-</div>
-</div>
-<a id="a239ccff8c5a25f711bde2b3860695147"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a239ccff8c5a25f711bde2b3860695147">&#9670;&nbsp;</a></span>length() <span class="overload">[2/2]</span></h2>
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-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvertex.html">vertex</a> &amp;&#160;</td>
-          <td class="paramname"><em>v2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const <a class="el" href="classvector3d.html">vector3d</a> &amp;&#160;</td>
-          <td class="paramname"><em>p</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
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-<p>A cosine parity vmec quantity.  
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-<tr class="memdesc:a7f98c537b11229df22c920048368a410"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a poloidal derivative at a radial s position.  <a href="classvmec__fourier.html#a7f98c537b11229df22c920048368a410">More...</a><br /></td></tr>
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-<tr class="memdesc:ae7feb17607da3a1d82700d546d0d4144"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a toroidal derivative at a radial s position.  <a href="classvmec__fourier.html#ae7feb17607da3a1d82700d546d0d4144">More...</a><br /></td></tr>
-<tr class="separator:ae7feb17607da3a1d82700d546d0d4144"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a7da8b03051498b0f6ba66ddafc025fdf"><td class="memItemLeft" align="right" valign="top"><a id="a7da8b03051498b0f6ba66ddafc025fdf"></a>
-const <a class="el" href="grid__quantity_8hpp.html#a1d46cf832974f65f1c17d70d5794352d">vmec_quantity</a>&lt; GRID_CLASS &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__fourier.html#a7da8b03051498b0f6ba66ddafc025fdf">quantity</a></td></tr>
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-const PARITY&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__fourier.html#a431fb060093dad71f1ce7407adc63704">func</a></td></tr>
-<tr class="memdesc:a431fb060093dad71f1ce7407adc63704"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parity function. <br /></td></tr>
-<tr class="separator:a431fb060093dad71f1ce7407adc63704"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><h3>template&lt;class GRID_CLASS, class PARITY&gt;<br />
-class vmec_fourier&lt; GRID_CLASS, PARITY &gt;</h3>
-
-<p>A cosine parity vmec quantity. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="ad0ef0762661a3b75d2401ca476b7f003"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad0ef0762661a3b75d2401ca476b7f003">&#9670;&nbsp;</a></span>vmec_fourier()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-template&lt;class GRID_CLASS , class PARITY &gt; </div>
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-  <tr>
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-      <table class="memname">
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-          <td class="memname"><a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; GRID_CLASS, PARITY &gt;::<a class="el" href="classvmec__fourier.html">vmec_fourier</a> </td>
-          <td>(</td>
-          <td class="paramtype">const <a class="el" href="grid__quantity_8hpp.html#a1d46cf832974f65f1c17d70d5794352d">vmec_quantity</a>&lt; GRID_CLASS &gt; &amp;&#160;</td>
-          <td class="paramname"><em>buffer</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>n</em>&#160;</td>
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-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-<p>Siesta radial quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">buffer</td><td>Buffer containing the radial quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<h2 class="groupheader">Member Function Documentation</h2>
-<a id="acaabf67495d1718f449630bb8a11d70a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acaabf67495d1718f449630bb8a11d70a">&#9670;&nbsp;</a></span>get()</h2>
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-          <td>(</td>
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-        <tr>
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-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
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-<p>Get a value at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial s position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Poloidal u position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Toroidal v position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The interpolated s position. </dd></dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a7f98c537b11229df22c920048368a410">&#9670;&nbsp;</a></span>get_du()</h2>
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-          <td>(</td>
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-<p>Get a poloidal derivative at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial s position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Poloidal u position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Toroidal v position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The interpolated s position. </dd></dl>
-
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#ae7feb17607da3a1d82700d546d0d4144">&#9670;&nbsp;</a></span>get_dv()</h2>
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-          <td class="memname">double <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; GRID_CLASS, PARITY &gt;::get_dv </td>
-          <td>(</td>
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-<p>Get a toroidal derivative at a radial s position. </p>
-<p>s_vmec = s_siesta^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial s position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Poloidal u position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Toroidal v position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The interpolated s position. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following file:<ul>
-<li>SIESTA/Testing/test_utilities/<a class="el" href="grid__quantity_8hpp_source.html">grid_quantity.hpp</a></li>
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-  <tr class="even"><td class="entry"><a class="el" href="classvmec__grid.html#ac363c2325e60c0efa94e7d24ee38f6ef">get</a>(const double s) const</td><td class="entry"><a class="el" href="classvmec__grid.html">vmec_grid&lt; GRID_CLASS &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-<p>A radial vmec quantity.  
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-<tr class="memitem:ac363c2325e60c0efa94e7d24ee38f6ef"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__grid.html#ac363c2325e60c0efa94e7d24ee38f6ef">get</a> (const double s) const</td></tr>
-<tr class="memdesc:ac363c2325e60c0efa94e7d24ee38f6ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get a value at a radial s position.  <a href="classvmec__grid.html#ac363c2325e60c0efa94e7d24ee38f6ef">More...</a><br /></td></tr>
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-Public Attributes</h2></td></tr>
-<tr class="memitem:a19befcdc8986f9b31895463b945fbdd1"><td class="memItemLeft" align="right" valign="top"><a id="a19befcdc8986f9b31895463b945fbdd1"></a>
-const GRID_CLASS&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__grid.html#a19befcdc8986f9b31895463b945fbdd1">grid</a></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><h3>template&lt;class GRID_CLASS&gt;<br />
-class vmec_grid&lt; GRID_CLASS &gt;</h3>
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-<p>A radial vmec quantity. </p>
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-<h2 class="memtitle"><span class="permalink"><a href="#ac363c2325e60c0efa94e7d24ee38f6ef">&#9670;&nbsp;</a></span>get()</h2>
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-<p>Get a value at a radial s position. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial s position. </td></tr>
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-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The interpolated s position. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this class was generated from the following file:<ul>
-<li>SIESTA/Testing/test_utilities/<a class="el" href="grid__quantity_8hpp_source.html">grid_quantity.hpp</a></li>
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-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#af9dc78eca368368eb5b4971669e2eb2a">bsubu</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a322633c12b608afd8077cf2c07fa1556">get_bsubu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#ac582255b86b9765dede666b4ba5e082f">get_bsups</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">get_jbsupu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a64f1847e1f1b557d55c77c3fe09471f5">get_jksups</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a98145f0e64f3531faf832471c66bd216">get_jksupu</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#ac913ccd09bd4c50e727ce2acbf80e772">get_phipf</a>(const double s) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#ae6052d6b3274f89b93454376568747c3">get_pressure</a>(const double s) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a10f9e060f315f2ca59b8b32cc9927efe">get_r</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a1a8c20ca1c1a4f18de05712f2999e53b">get_test</a>(const double s) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a80af6a67a62681628a4d5ddc65fb4331">get_z</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#afc5686dd846f6ac420931e03c13a0f8d">get_z_prime</a>(const double s, const double u, const double v) const</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">j</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a32625a70f54782188f5c24d4aca1e936">jksupu</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a15ccf364ed023200a9f343ed020393d3">jksupv</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">load</a>(const std::string &amp;wout_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">load_fourier</a>(const std::string &amp;wout_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">load_fourier_nyq</a>(const std::string &amp;wout_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a664e01e407530dec2bb8946fdb386b85">load_scalar</a>(const std::string &amp;wout_file, const std::string &amp;name)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#abbbd7b0cacfb1805db776642147b5420">make_full</a>()</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">p</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">phipf</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">r</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">signj</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">test_full</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">to_prime</a>(const vmec_fourier&lt; full_grid, PARITY &gt; vmec)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#ac395b16cc877af1062e6b13341f0b5b9">to_prime</a>(const vmec_fourier&lt; half_grid, PARITY &gt; vmec)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
-  <tr><td class="entry"><a class="el" href="classvmec__quantities.html#a31d2690604dcfb331cbb9497c966f995">vmec_quantities</a>(const std::string &amp;wout_file)</td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">z</a></td><td class="entry"><a class="el" href="classvmec__quantities.html">vmec_quantities</a></td><td class="entry"></td></tr>
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-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
-<a href="#pub-attribs">Public Attributes</a> &#124;
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-
-<p>Vmec quantities.  
- <a href="classvmec__quantities.html#details">More...</a></p>
-
-<p><code>#include &lt;<a class="el" href="vmec__quantities_8hpp_source.html">vmec_quantities.hpp</a>&gt;</code></p>
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-<tr class="memitem:a31d2690604dcfb331cbb9497c966f995"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a31d2690604dcfb331cbb9497c966f995">vmec_quantities</a> (const std::string &amp;wout_file)</td></tr>
-<tr class="memdesc:a31d2690604dcfb331cbb9497c966f995"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vmec quantities.  <a href="classvmec__quantities.html#a31d2690604dcfb331cbb9497c966f995">More...</a><br /></td></tr>
-<tr class="separator:a31d2690604dcfb331cbb9497c966f995"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a10f9e060f315f2ca59b8b32cc9927efe"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a10f9e060f315f2ca59b8b32cc9927efe">get_r</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a10f9e060f315f2ca59b8b32cc9927efe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get R quantity.  <a href="classvmec__quantities.html#a10f9e060f315f2ca59b8b32cc9927efe">More...</a><br /></td></tr>
-<tr class="separator:a10f9e060f315f2ca59b8b32cc9927efe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd9866149633d9d9abc3c38cd5d74978"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#acd9866149633d9d9abc3c38cd5d74978">get_r_prime</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:acd9866149633d9d9abc3c38cd5d74978"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get R' quantity.  <a href="classvmec__quantities.html#acd9866149633d9d9abc3c38cd5d74978">More...</a><br /></td></tr>
-<tr class="separator:acd9866149633d9d9abc3c38cd5d74978"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ada4b927aae69906159a1591d4d879bb4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ada4b927aae69906159a1591d4d879bb4">get_dr_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ada4b927aae69906159a1591d4d879bb4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dRdu quantity.  <a href="classvmec__quantities.html#ada4b927aae69906159a1591d4d879bb4">More...</a><br /></td></tr>
-<tr class="separator:ada4b927aae69906159a1591d4d879bb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adf52d55076b1c90fabb49c79d0bc2140"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#adf52d55076b1c90fabb49c79d0bc2140">get_dr_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:adf52d55076b1c90fabb49c79d0bc2140"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dRdv quantity.  <a href="classvmec__quantities.html#adf52d55076b1c90fabb49c79d0bc2140">More...</a><br /></td></tr>
-<tr class="separator:adf52d55076b1c90fabb49c79d0bc2140"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a80af6a67a62681628a4d5ddc65fb4331"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a80af6a67a62681628a4d5ddc65fb4331">get_z</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a80af6a67a62681628a4d5ddc65fb4331"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get Z quantity.  <a href="classvmec__quantities.html#a80af6a67a62681628a4d5ddc65fb4331">More...</a><br /></td></tr>
-<tr class="separator:a80af6a67a62681628a4d5ddc65fb4331"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc5686dd846f6ac420931e03c13a0f8d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#afc5686dd846f6ac420931e03c13a0f8d">get_z_prime</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:afc5686dd846f6ac420931e03c13a0f8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get Z' quantity.  <a href="classvmec__quantities.html#afc5686dd846f6ac420931e03c13a0f8d">More...</a><br /></td></tr>
-<tr class="separator:afc5686dd846f6ac420931e03c13a0f8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aba5ddaec243db7c52803c6d9a4e83d8a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#aba5ddaec243db7c52803c6d9a4e83d8a">get_dz_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:aba5ddaec243db7c52803c6d9a4e83d8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dZdu quantity.  <a href="classvmec__quantities.html#aba5ddaec243db7c52803c6d9a4e83d8a">More...</a><br /></td></tr>
-<tr class="separator:aba5ddaec243db7c52803c6d9a4e83d8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a89b3004d402a3a4f20acb0622d4a7442"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a89b3004d402a3a4f20acb0622d4a7442">get_dz_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a89b3004d402a3a4f20acb0622d4a7442"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dZdv quantity.  <a href="classvmec__quantities.html#a89b3004d402a3a4f20acb0622d4a7442">More...</a><br /></td></tr>
-<tr class="separator:a89b3004d402a3a4f20acb0622d4a7442"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac913ccd09bd4c50e727ce2acbf80e772"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac913ccd09bd4c50e727ce2acbf80e772">get_phipf</a> (const double s) const</td></tr>
-<tr class="memdesc:ac913ccd09bd4c50e727ce2acbf80e772"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get phipf quantity.  <a href="classvmec__quantities.html#ac913ccd09bd4c50e727ce2acbf80e772">More...</a><br /></td></tr>
-<tr class="separator:ac913ccd09bd4c50e727ce2acbf80e772"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3e2a46a3afa55e22dbb8857bfc0eb166"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a3e2a46a3afa55e22dbb8857bfc0eb166">get_chipf</a> (const double s) const</td></tr>
-<tr class="memdesc:a3e2a46a3afa55e22dbb8857bfc0eb166"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get chipf quantity.  <a href="classvmec__quantities.html#a3e2a46a3afa55e22dbb8857bfc0eb166">More...</a><br /></td></tr>
-<tr class="separator:a3e2a46a3afa55e22dbb8857bfc0eb166"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac582255b86b9765dede666b4ba5e082f"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac582255b86b9765dede666b4ba5e082f">get_bsups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ac582255b86b9765dede666b4ba5e082f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsups quantity.  <a href="classvmec__quantities.html#ac582255b86b9765dede666b4ba5e082f">More...</a><br /></td></tr>
-<tr class="separator:ac582255b86b9765dede666b4ba5e082f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a98d4a605d60d6be1fa3dca89a50a90ea"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a98d4a605d60d6be1fa3dca89a50a90ea">get_bsupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a98d4a605d60d6be1fa3dca89a50a90ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsupu quantity.  <a href="classvmec__quantities.html#a98d4a605d60d6be1fa3dca89a50a90ea">More...</a><br /></td></tr>
-<tr class="separator:a98d4a605d60d6be1fa3dca89a50a90ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a68eb8fc62470a800c79c7e99c78d8c74"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a68eb8fc62470a800c79c7e99c78d8c74">get_bsupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a68eb8fc62470a800c79c7e99c78d8c74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsupv quantity.  <a href="classvmec__quantities.html#a68eb8fc62470a800c79c7e99c78d8c74">More...</a><br /></td></tr>
-<tr class="separator:a68eb8fc62470a800c79c7e99c78d8c74"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0527c7c8184f5f795a7d60e1b6c89581"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a0527c7c8184f5f795a7d60e1b6c89581">get_bsubs</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a0527c7c8184f5f795a7d60e1b6c89581"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubs quantity.  <a href="classvmec__quantities.html#a0527c7c8184f5f795a7d60e1b6c89581">More...</a><br /></td></tr>
-<tr class="separator:a0527c7c8184f5f795a7d60e1b6c89581"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a322633c12b608afd8077cf2c07fa1556"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a322633c12b608afd8077cf2c07fa1556">get_bsubu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a322633c12b608afd8077cf2c07fa1556"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubu quantity.  <a href="classvmec__quantities.html#a322633c12b608afd8077cf2c07fa1556">More...</a><br /></td></tr>
-<tr class="separator:a322633c12b608afd8077cf2c07fa1556"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3dae2a73ec7e39d59486dfb614982ee"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#af3dae2a73ec7e39d59486dfb614982ee">get_bsubv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:af3dae2a73ec7e39d59486dfb614982ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get bsubv quantity.  <a href="classvmec__quantities.html#af3dae2a73ec7e39d59486dfb614982ee">More...</a><br /></td></tr>
-<tr class="separator:af3dae2a73ec7e39d59486dfb614982ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64f1847e1f1b557d55c77c3fe09471f5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a64f1847e1f1b557d55c77c3fe09471f5">get_jksups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a64f1847e1f1b557d55c77c3fe09471f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksups quantity.  <a href="classvmec__quantities.html#a64f1847e1f1b557d55c77c3fe09471f5">More...</a><br /></td></tr>
-<tr class="separator:a64f1847e1f1b557d55c77c3fe09471f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a98145f0e64f3531faf832471c66bd216"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a98145f0e64f3531faf832471c66bd216">get_jksupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a98145f0e64f3531faf832471c66bd216"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksupu quantity.  <a href="classvmec__quantities.html#a98145f0e64f3531faf832471c66bd216">More...</a><br /></td></tr>
-<tr class="separator:a98145f0e64f3531faf832471c66bd216"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e917c830d32b001ce5ff2d386940115"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a4e917c830d32b001ce5ff2d386940115">get_jksupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a4e917c830d32b001ce5ff2d386940115"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jksupv quantity.  <a href="classvmec__quantities.html#a4e917c830d32b001ce5ff2d386940115">More...</a><br /></td></tr>
-<tr class="separator:a4e917c830d32b001ce5ff2d386940115"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad010afd933c4578f9a80909b30b99647"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ad010afd933c4578f9a80909b30b99647">get_jbsups</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:ad010afd933c4578f9a80909b30b99647"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsups quantity.  <a href="classvmec__quantities.html#ad010afd933c4578f9a80909b30b99647">More...</a><br /></td></tr>
-<tr class="separator:ad010afd933c4578f9a80909b30b99647"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adc2134265bb00bcb0c6d3c160e2cd7e6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">get_jbsupu</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:adc2134265bb00bcb0c6d3c160e2cd7e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsupu quantity.  <a href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">More...</a><br /></td></tr>
-<tr class="separator:adc2134265bb00bcb0c6d3c160e2cd7e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acca0dd47dc704bdec388f2d085e2e385"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#acca0dd47dc704bdec388f2d085e2e385">get_jbsupv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:acca0dd47dc704bdec388f2d085e2e385"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jbsupv quantity.  <a href="classvmec__quantities.html#acca0dd47dc704bdec388f2d085e2e385">More...</a><br /></td></tr>
-<tr class="separator:acca0dd47dc704bdec388f2d085e2e385"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adfc29f73331852c2a1260723c035ca56"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#adfc29f73331852c2a1260723c035ca56">get_jacobian</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:adfc29f73331852c2a1260723c035ca56"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get jacobian.  <a href="classvmec__quantities.html#adfc29f73331852c2a1260723c035ca56">More...</a><br /></td></tr>
-<tr class="separator:adfc29f73331852c2a1260723c035ca56"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8ea553ea5b1e0dc2f858e14fc863761"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#aa8ea553ea5b1e0dc2f858e14fc863761">get_curtor</a> () const</td></tr>
-<tr class="memdesc:aa8ea553ea5b1e0dc2f858e14fc863761"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get total toroidal current.  <a href="classvmec__quantities.html#aa8ea553ea5b1e0dc2f858e14fc863761">More...</a><br /></td></tr>
-<tr class="separator:aa8ea553ea5b1e0dc2f858e14fc863761"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acf89a13cff0cf81f5caa2ca1fc7ae204"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#acf89a13cff0cf81f5caa2ca1fc7ae204">get_dbsupu_du</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:acf89a13cff0cf81f5caa2ca1fc7ae204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dbsupudu quantity.  <a href="classvmec__quantities.html#acf89a13cff0cf81f5caa2ca1fc7ae204">More...</a><br /></td></tr>
-<tr class="separator:acf89a13cff0cf81f5caa2ca1fc7ae204"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69eb03a866d2b0638bbcc2c4bd12fbca"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a69eb03a866d2b0638bbcc2c4bd12fbca">get_dbsupv_dv</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a69eb03a866d2b0638bbcc2c4bd12fbca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get dbsupvdv quantity.  <a href="classvmec__quantities.html#a69eb03a866d2b0638bbcc2c4bd12fbca">More...</a><br /></td></tr>
-<tr class="separator:a69eb03a866d2b0638bbcc2c4bd12fbca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a23c6f9c201a2ac55d99aa509f70f7040"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a23c6f9c201a2ac55d99aa509f70f7040">get_divb</a> (const double s, const double u, const double v) const</td></tr>
-<tr class="memdesc:a23c6f9c201a2ac55d99aa509f70f7040"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get divergence of B.  <a href="classvmec__quantities.html#a23c6f9c201a2ac55d99aa509f70f7040">More...</a><br /></td></tr>
-<tr class="separator:a23c6f9c201a2ac55d99aa509f70f7040"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae6052d6b3274f89b93454376568747c3"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ae6052d6b3274f89b93454376568747c3">get_pressure</a> (const double s) const</td></tr>
-<tr class="memdesc:ae6052d6b3274f89b93454376568747c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get pressure quantity.  <a href="classvmec__quantities.html#ae6052d6b3274f89b93454376568747c3">More...</a><br /></td></tr>
-<tr class="separator:ae6052d6b3274f89b93454376568747c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a8c20ca1c1a4f18de05712f2999e53b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a1a8c20ca1c1a4f18de05712f2999e53b">get_test</a> (const double s) const</td></tr>
-<tr class="memdesc:a1a8c20ca1c1a4f18de05712f2999e53b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get test quantity.  <a href="classvmec__quantities.html#a1a8c20ca1c1a4f18de05712f2999e53b">More...</a><br /></td></tr>
-<tr class="separator:a1a8c20ca1c1a4f18de05712f2999e53b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
-Static Public Member Functions</h2></td></tr>
-<tr class="memitem:abbbd7b0cacfb1805db776642147b5420"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#abbbd7b0cacfb1805db776642147b5420">make_full</a> ()</td></tr>
-<tr class="memdesc:abbbd7b0cacfb1805db776642147b5420"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to make a test quantity.  <a href="classvmec__quantities.html#abbbd7b0cacfb1805db776642147b5420">More...</a><br /></td></tr>
-<tr class="separator:abbbd7b0cacfb1805db776642147b5420"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a664e01e407530dec2bb8946fdb386b85"><td class="memTemplParams" colspan="2">template&lt;typename TYPE &gt; </td></tr>
-<tr class="memitem:a664e01e407530dec2bb8946fdb386b85"><td class="memTemplItemLeft" align="right" valign="top">static double&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a664e01e407530dec2bb8946fdb386b85">load_scalar</a> (const std::string &amp;wout_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:a664e01e407530dec2bb8946fdb386b85"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a scalar vmec quantity.  <a href="classvmec__quantities.html#a664e01e407530dec2bb8946fdb386b85">More...</a><br /></td></tr>
-<tr class="separator:a664e01e407530dec2bb8946fdb386b85"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac42bef72c7ad04961cccef1e48938197"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS &gt; </td></tr>
-<tr class="memitem:ac42bef72c7ad04961cccef1e48938197"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; GIRD_CLASS &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">load</a> (const std::string &amp;wout_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:ac42bef72c7ad04961cccef1e48938197"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a vmec quantity.  <a href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">More...</a><br /></td></tr>
-<tr class="separator:ac42bef72c7ad04961cccef1e48938197"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af8793d14fa2f69371eae4d28be30bc95"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS , class PARITY &gt; </td></tr>
-<tr class="memitem:af8793d14fa2f69371eae4d28be30bc95"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; GIRD_CLASS, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">load_fourier</a> (const std::string &amp;wout_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:af8793d14fa2f69371eae4d28be30bc95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a fourier vmec quantity.  <a href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">More...</a><br /></td></tr>
-<tr class="separator:af8793d14fa2f69371eae4d28be30bc95"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3417fe660d4a5d333ae427b1a03b8b79"><td class="memTemplParams" colspan="2">template&lt;class GIRD_CLASS , class PARITY &gt; </td></tr>
-<tr class="memitem:a3417fe660d4a5d333ae427b1a03b8b79"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; GIRD_CLASS, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">load_fourier_nyq</a> (const std::string &amp;wout_file, const std::string &amp;name)</td></tr>
-<tr class="memdesc:a3417fe660d4a5d333ae427b1a03b8b79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Factory method to load a nyquest fourier vmec quantity.  <a href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">More...</a><br /></td></tr>
-<tr class="separator:a3417fe660d4a5d333ae427b1a03b8b79"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a803e2f4f2a6c22379a109da6533880ef"><td class="memTemplParams" colspan="2">template&lt;class PARITY &gt; </td></tr>
-<tr class="memitem:a803e2f4f2a6c22379a109da6533880ef"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">to_prime</a> (const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, PARITY &gt; vmec)</td></tr>
-<tr class="memdesc:a803e2f4f2a6c22379a109da6533880ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert full grid quantity to half grid primed.  <a href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">More...</a><br /></td></tr>
-<tr class="separator:a803e2f4f2a6c22379a109da6533880ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac395b16cc877af1062e6b13341f0b5b9"><td class="memTemplParams" colspan="2">template&lt;class PARITY &gt; </td></tr>
-<tr class="memitem:ac395b16cc877af1062e6b13341f0b5b9"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, PARITY &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac395b16cc877af1062e6b13341f0b5b9">to_prime</a> (const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, PARITY &gt; vmec)</td></tr>
-<tr class="memdesc:ac395b16cc877af1062e6b13341f0b5b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert full grid quantity to half grid primed.  <a href="classvmec__quantities.html#ac395b16cc877af1062e6b13341f0b5b9">More...</a><br /></td></tr>
-<tr class="separator:ac395b16cc877af1062e6b13341f0b5b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
-Public Attributes</h2></td></tr>
-<tr class="memitem:abeedad8f2dc5e5a132d559b322d51834"><td class="memItemLeft" align="right" valign="top"><a id="abeedad8f2dc5e5a132d559b322d51834"></a>
-const <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">test_full</a></td></tr>
-<tr class="memdesc:abeedad8f2dc5e5a132d559b322d51834"><td class="mdescLeft">&#160;</td><td class="mdescRight">test function <br /></td></tr>
-<tr class="separator:abeedad8f2dc5e5a132d559b322d51834"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3adf0cde2f5efc9df84f8460ed945c4d"><td class="memItemLeft" align="right" valign="top"><a id="a3adf0cde2f5efc9df84f8460ed945c4d"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">r</a></td></tr>
-<tr class="memdesc:a3adf0cde2f5efc9df84f8460ed945c4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">r <br /></td></tr>
-<tr class="separator:a3adf0cde2f5efc9df84f8460ed945c4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a563578864bee7322a4bd3fbc5fa911f7"><td class="memItemLeft" align="right" valign="top"><a id="a563578864bee7322a4bd3fbc5fa911f7"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a563578864bee7322a4bd3fbc5fa911f7">drds</a></td></tr>
-<tr class="memdesc:a563578864bee7322a4bd3fbc5fa911f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">drds <br /></td></tr>
-<tr class="separator:a563578864bee7322a4bd3fbc5fa911f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a982f1eaab5d29a088b4f65a802e62d68"><td class="memItemLeft" align="right" valign="top"><a id="a982f1eaab5d29a088b4f65a802e62d68"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">z</a></td></tr>
-<tr class="memdesc:a982f1eaab5d29a088b4f65a802e62d68"><td class="mdescLeft">&#160;</td><td class="mdescRight">z <br /></td></tr>
-<tr class="separator:a982f1eaab5d29a088b4f65a802e62d68"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#adbd10a1287f2750bd901df3cb5713c0f">dzds</a></td></tr>
-<tr class="memdesc:adbd10a1287f2750bd901df3cb5713c0f"><td class="mdescLeft">&#160;</td><td class="mdescRight">dzds <br /></td></tr>
-<tr class="separator:adbd10a1287f2750bd901df3cb5713c0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a258c851db21a427a2cac6e0751425360"><td class="memItemLeft" align="right" valign="top"><a id="a258c851db21a427a2cac6e0751425360"></a>
-const <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">phipf</a></td></tr>
-<tr class="memdesc:a258c851db21a427a2cac6e0751425360"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial derivative of toroidal flux. <br /></td></tr>
-<tr class="separator:a258c851db21a427a2cac6e0751425360"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac9a49ce630f3e339bd8721288be2c205"><td class="memItemLeft" align="right" valign="top"><a id="ac9a49ce630f3e339bd8721288be2c205"></a>
-const <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac9a49ce630f3e339bd8721288be2c205">chipf</a></td></tr>
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-<tr class="separator:ac9a49ce630f3e339bd8721288be2c205"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac15f8fa63b8a395636a55a86ad8491e4"><td class="memItemLeft" align="right" valign="top"><a id="ac15f8fa63b8a395636a55a86ad8491e4"></a>
-const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">signj</a></td></tr>
-<tr class="memdesc:ac15f8fa63b8a395636a55a86ad8491e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sign of vmec jacobian. <br /></td></tr>
-<tr class="separator:ac15f8fa63b8a395636a55a86ad8491e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca432c3dbe4bee4c4a1726869d0843d7"><td class="memItemLeft" align="right" valign="top"><a id="aca432c3dbe4bee4c4a1726869d0843d7"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">j</a></td></tr>
-<tr class="memdesc:aca432c3dbe4bee4c4a1726869d0843d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jacobian. <br /></td></tr>
-<tr class="separator:aca432c3dbe4bee4c4a1726869d0843d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6c17f6674fa261ce4cd918ccdebb7e98"><td class="memItemLeft" align="right" valign="top"><a id="a6c17f6674fa261ce4cd918ccdebb7e98"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a6c17f6674fa261ce4cd918ccdebb7e98">bsupu</a></td></tr>
-<tr class="memdesc:a6c17f6674fa261ce4cd918ccdebb7e98"><td class="mdescLeft">&#160;</td><td class="mdescRight">B^u. <br /></td></tr>
-<tr class="separator:a6c17f6674fa261ce4cd918ccdebb7e98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af7951caf03c35726e9fa89070d191816"><td class="memItemLeft" align="right" valign="top"><a id="af7951caf03c35726e9fa89070d191816"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">bsupv</a></td></tr>
-<tr class="memdesc:af7951caf03c35726e9fa89070d191816"><td class="mdescLeft">&#160;</td><td class="mdescRight">B^v. <br /></td></tr>
-<tr class="separator:af7951caf03c35726e9fa89070d191816"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a49f4c225ed57b741b2770272d4b03593"><td class="memItemLeft" align="right" valign="top"><a id="a49f4c225ed57b741b2770272d4b03593"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classsine.html">sine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a49f4c225ed57b741b2770272d4b03593">bsubs</a></td></tr>
-<tr class="memdesc:a49f4c225ed57b741b2770272d4b03593"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_s. <br /></td></tr>
-<tr class="separator:a49f4c225ed57b741b2770272d4b03593"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af9dc78eca368368eb5b4971669e2eb2a"><td class="memItemLeft" align="right" valign="top"><a id="af9dc78eca368368eb5b4971669e2eb2a"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#af9dc78eca368368eb5b4971669e2eb2a">bsubu</a></td></tr>
-<tr class="memdesc:af9dc78eca368368eb5b4971669e2eb2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_u. <br /></td></tr>
-<tr class="separator:af9dc78eca368368eb5b4971669e2eb2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec9adf33bbdc742091fd7f80424d3fd3"><td class="memItemLeft" align="right" valign="top"><a id="aec9adf33bbdc742091fd7f80424d3fd3"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classhalf__grid.html">half_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#aec9adf33bbdc742091fd7f80424d3fd3">bsubv</a></td></tr>
-<tr class="memdesc:aec9adf33bbdc742091fd7f80424d3fd3"><td class="mdescLeft">&#160;</td><td class="mdescRight">B_v. <br /></td></tr>
-<tr class="separator:aec9adf33bbdc742091fd7f80424d3fd3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32625a70f54782188f5c24d4aca1e936"><td class="memItemLeft" align="right" valign="top"><a id="a32625a70f54782188f5c24d4aca1e936"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a32625a70f54782188f5c24d4aca1e936">jksupu</a></td></tr>
-<tr class="memdesc:a32625a70f54782188f5c24d4aca1e936"><td class="mdescLeft">&#160;</td><td class="mdescRight">JK^u. <br /></td></tr>
-<tr class="separator:a32625a70f54782188f5c24d4aca1e936"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15ccf364ed023200a9f343ed020393d3"><td class="memItemLeft" align="right" valign="top"><a id="a15ccf364ed023200a9f343ed020393d3"></a>
-const <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a>, <a class="el" href="classcosine.html">cosine</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a15ccf364ed023200a9f343ed020393d3">jksupv</a></td></tr>
-<tr class="memdesc:a15ccf364ed023200a9f343ed020393d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">JK^v. <br /></td></tr>
-<tr class="separator:a15ccf364ed023200a9f343ed020393d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebe1228702d63cc0205e7c49748a7da2"><td class="memItemLeft" align="right" valign="top"><a id="aebe1228702d63cc0205e7c49748a7da2"></a>
-const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#aebe1228702d63cc0205e7c49748a7da2">curtor</a></td></tr>
-<tr class="memdesc:aebe1228702d63cc0205e7c49748a7da2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total toroidal current. <br /></td></tr>
-<tr class="separator:aebe1228702d63cc0205e7c49748a7da2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d726b0baf90edd2a018510271cbe553"><td class="memItemLeft" align="right" valign="top"><a id="a5d726b0baf90edd2a018510271cbe553"></a>
-const <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; <a class="el" href="classfull__grid.html">full_grid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">p</a></td></tr>
-<tr class="memdesc:a5d726b0baf90edd2a018510271cbe553"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pressure. <br /></td></tr>
-<tr class="separator:a5d726b0baf90edd2a018510271cbe553"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Vmec quantities. </p>
-<p>Class representing a quantities from vmec. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a31d2690604dcfb331cbb9497c966f995"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a31d2690604dcfb331cbb9497c966f995">&#9670;&nbsp;</a></span>vmec_quantities()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">vmec_quantities::vmec_quantities </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>wout_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Vmec quantities. </p>
-<p>For now this only supports symmetric cases only.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>File name of a vmec wout file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function Documentation</h2>
-<a id="a0527c7c8184f5f795a7d60e1b6c89581"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0527c7c8184f5f795a7d60e1b6c89581">&#9670;&nbsp;</a></span>get_bsubs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_bsubs </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubs quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubs at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a322633c12b608afd8077cf2c07fa1556"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a322633c12b608afd8077cf2c07fa1556">&#9670;&nbsp;</a></span>get_bsubu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_bsubu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#af3dae2a73ec7e39d59486dfb614982ee">&#9670;&nbsp;</a></span>get_bsubv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_bsubv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsubv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsubv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#ac582255b86b9765dede666b4ba5e082f">&#9670;&nbsp;</a></span>get_bsups()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
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-        <tr>
-          <td class="memname">double vmec_quantities::get_bsups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a98d4a605d60d6be1fa3dca89a50a90ea"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a98d4a605d60d6be1fa3dca89a50a90ea">&#9670;&nbsp;</a></span>get_bsupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
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-          <td class="memname">double vmec_quantities::get_bsupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a68eb8fc62470a800c79c7e99c78d8c74"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a68eb8fc62470a800c79c7e99c78d8c74">&#9670;&nbsp;</a></span>get_bsupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
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-          <td class="memname">double vmec_quantities::get_bsupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get bsupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>bsupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a3e2a46a3afa55e22dbb8857bfc0eb166"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3e2a46a3afa55e22dbb8857bfc0eb166">&#9670;&nbsp;</a></span>get_chipf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
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-        <tr>
-          <td class="memname">double vmec_quantities::get_chipf </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
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-</div><div class="memdoc">
-
-<p>Get chipf quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>chipf at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="aa8ea553ea5b1e0dc2f858e14fc863761"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa8ea553ea5b1e0dc2f858e14fc863761">&#9670;&nbsp;</a></span>get_curtor()</h2>
-
-<div class="memitem">
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-          <td class="memname">double vmec_quantities::get_curtor </td>
-          <td>(</td>
-          <td class="paramname"></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get total toroidal current. </p>
-<dl class="section return"><dt>Returns</dt><dd>The total toroidal current. </dd></dl>
-
-</div>
-</div>
-<a id="acf89a13cff0cf81f5caa2ca1fc7ae204"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acf89a13cff0cf81f5caa2ca1fc7ae204">&#9670;&nbsp;</a></span>get_dbsupu_du()</h2>
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-<div class="memitem">
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-          <td class="memname">double vmec_quantities::get_dbsupu_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dbsupudu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dbsupudu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a69eb03a866d2b0638bbcc2c4bd12fbca"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a69eb03a866d2b0638bbcc2c4bd12fbca">&#9670;&nbsp;</a></span>get_dbsupv_dv()</h2>
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-<div class="memitem">
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-          <td class="memname">double vmec_quantities::get_dbsupv_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dbsupvdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dbsupvdv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a23c6f9c201a2ac55d99aa509f70f7040"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a23c6f9c201a2ac55d99aa509f70f7040">&#9670;&nbsp;</a></span>get_divb()</h2>
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-<div class="memitem">
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-          <td class="memname">double vmec_quantities::get_divb </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get divergence of B. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Div B at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ada4b927aae69906159a1591d4d879bb4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ada4b927aae69906159a1591d4d879bb4">&#9670;&nbsp;</a></span>get_dr_du()</h2>
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-<div class="memitem">
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-          <td class="memname">double vmec_quantities::get_dr_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dRdu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dRdu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="adf52d55076b1c90fabb49c79d0bc2140"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adf52d55076b1c90fabb49c79d0bc2140">&#9670;&nbsp;</a></span>get_dr_dv()</h2>
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-<div class="memitem">
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-<table class="mlabels">
-  <tr>
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-          <td class="memname">double vmec_quantities::get_dr_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dRdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dRdv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="aba5ddaec243db7c52803c6d9a4e83d8a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aba5ddaec243db7c52803c6d9a4e83d8a">&#9670;&nbsp;</a></span>get_dz_du()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
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-          <td class="memname">double vmec_quantities::get_dz_du </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dZdu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dZdu at the s,u,v position. </dd></dl>
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-</div>
-</div>
-<a id="a89b3004d402a3a4f20acb0622d4a7442"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a89b3004d402a3a4f20acb0622d4a7442">&#9670;&nbsp;</a></span>get_dz_dv()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
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-          <td class="memname">double vmec_quantities::get_dz_dv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get dZdv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>dZdv at the s,u,v position. </dd></dl>
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-</div>
-</div>
-<a id="adfc29f73331852c2a1260723c035ca56"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adfc29f73331852c2a1260723c035ca56">&#9670;&nbsp;</a></span>get_jacobian()</h2>
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-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
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-          <td class="memname">double vmec_quantities::get_jacobian </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jacobian. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jacobian at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ad010afd933c4578f9a80909b30b99647"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad010afd933c4578f9a80909b30b99647">&#9670;&nbsp;</a></span>get_jbsups()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jbsups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="adc2134265bb00bcb0c6d3c160e2cd7e6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adc2134265bb00bcb0c6d3c160e2cd7e6">&#9670;&nbsp;</a></span>get_jbsupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jbsupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="acca0dd47dc704bdec388f2d085e2e385"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acca0dd47dc704bdec388f2d085e2e385">&#9670;&nbsp;</a></span>get_jbsupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jbsupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jbsupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jbsupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a64f1847e1f1b557d55c77c3fe09471f5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a64f1847e1f1b557d55c77c3fe09471f5">&#9670;&nbsp;</a></span>get_jksups()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jksups </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksups quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksups at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a98145f0e64f3531faf832471c66bd216"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a98145f0e64f3531faf832471c66bd216">&#9670;&nbsp;</a></span>get_jksupu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jksupu </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksupu quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksupu at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a4e917c830d32b001ce5ff2d386940115"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e917c830d32b001ce5ff2d386940115">&#9670;&nbsp;</a></span>get_jksupv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_jksupv </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get jksupv quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>jksupv at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="ac913ccd09bd4c50e727ce2acbf80e772"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac913ccd09bd4c50e727ce2acbf80e772">&#9670;&nbsp;</a></span>get_phipf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_phipf </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get phipf quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>phipf at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="ae6052d6b3274f89b93454376568747c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae6052d6b3274f89b93454376568747c3">&#9670;&nbsp;</a></span>get_pressure()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_pressure </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get pressure quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pressure at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="a10f9e060f315f2ca59b8b32cc9927efe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a10f9e060f315f2ca59b8b32cc9927efe">&#9670;&nbsp;</a></span>get_r()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_r </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get R quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>R at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="acd9866149633d9d9abc3c38cd5d74978"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd9866149633d9d9abc3c38cd5d74978">&#9670;&nbsp;</a></span>get_r_prime()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_r_prime </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get R' quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>R' at the s,u,v position. </dd></dl>
-
-</div>
-</div>
-<a id="a1a8c20ca1c1a4f18de05712f2999e53b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1a8c20ca1c1a4f18de05712f2999e53b">&#9670;&nbsp;</a></span>get_test()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_test </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td> const</td>
-        </tr>
-      </table>
-  </td>
-  <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
-  </tr>
-</table>
-</div><div class="memdoc">
-
-<p>Get test quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Test value at the s position. </dd></dl>
-
-</div>
-</div>
-<a id="a80af6a67a62681628a4d5ddc65fb4331"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a80af6a67a62681628a4d5ddc65fb4331">&#9670;&nbsp;</a></span>get_z()</h2>
-
-<div class="memitem">
-<div class="memproto">
-<table class="mlabels">
-  <tr>
-  <td class="mlabels-left">
-      <table class="memname">
-        <tr>
-          <td class="memname">double vmec_quantities::get_z </td>
-          <td>(</td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const double&#160;</td>
-          <td class="paramname"><em>v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td> const</td>
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-<p>Get Z quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
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-<a id="afc5686dd846f6ac420931e03c13a0f8d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc5686dd846f6ac420931e03c13a0f8d">&#9670;&nbsp;</a></span>get_z_prime()</h2>
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-
-<p>Get Z' quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">v</td><td>Radial position. </td></tr>
-  </table>
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-<dl class="section return"><dt>Returns</dt><dd>R' at the s,u,v position. </dd></dl>
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-<a id="ac42bef72c7ad04961cccef1e48938197"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac42bef72c7ad04961cccef1e48938197">&#9670;&nbsp;</a></span>load()</h2>
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-template&lt;class GIRD_CLASS &gt; </div>
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-          <td class="memname">static <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt;GIRD_CLASS&gt; vmec_quantities::load </td>
-          <td>(</td>
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-
-<p>Factory method to load a vmec quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>File name of a vmec wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed vmec grid quantity. </dd></dl>
-
-</div>
-</div>
-<a id="af8793d14fa2f69371eae4d28be30bc95"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af8793d14fa2f69371eae4d28be30bc95">&#9670;&nbsp;</a></span>load_fourier()</h2>
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-          <td class="memname">static <a class="el" href="classvmec__fourier.html">vmec_fourier</a>&lt;GIRD_CLASS, PARITY&gt; vmec_quantities::load_fourier </td>
-          <td>(</td>
-          <td class="paramtype">const std::string &amp;&#160;</td>
-          <td class="paramname"><em>wout_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>name</em>&#160;</td>
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-<p>Factory method to load a fourier vmec quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>File name of a vmec wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed vmec fourier quantity. </dd></dl>
-
-</div>
-</div>
-<a id="a3417fe660d4a5d333ae427b1a03b8b79"></a>
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-          <td>(</td>
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-          <td class="paramname"><em>wout_file</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>name</em>&#160;</td>
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-          <td></td>
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-<p>Factory method to load a nyquest fourier vmec quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>File name of a vmec wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the nyquest quantity to load. </td></tr>
-  </table>
-  </dd>
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-<dl class="section return"><dt>Returns</dt><dd>A constructed vmec nyquest fourier quantity. </dd></dl>
-
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-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a664e01e407530dec2bb8946fdb386b85">&#9670;&nbsp;</a></span>load_scalar()</h2>
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-          <td>(</td>
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-          <td class="paramname"><em>wout_file</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
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-</table>
-</div><div class="memdoc">
-
-<p>Factory method to load a scalar vmec quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>File name of a vmec wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the quantity to load. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>A constructed scalar quantity. </dd></dl>
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-<p>Factory method to make a test quantity. </p>
-<dl class="section return"><dt>Returns</dt><dd>A constructed test quantity. </dd></dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a803e2f4f2a6c22379a109da6533880ef">&#9670;&nbsp;</a></span>to_prime() <span class="overload">[1/2]</span></h2>
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-<p>Convert full grid quantity to half grid primed. </p>
-<dl class="params"><dt>Parameters</dt><dd>
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-<dl class="section return"><dt>Returns</dt><dd>A full grid derivative. </dd></dl>
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-<a href="commandline__parser_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//  The @header2, @begin_table, @item3 and @end_table commands are custom</span></div>
-<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">//  defined commands in Doxygen.in. They are defined under ALIASES. For the page</span></div>
-<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">//  created here, the 80 column limit is exceeded. Arguments of aliases are</span></div>
-<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">//  separated by &#39;,&#39;. If you intended &#39;,&#39; to be a string you must use an escaped</span></div>
-<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//  comma &#39;\,&#39;.</span></div>
-<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">//</span></div>
-<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;<span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;<span class="comment"></span><span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160; </div>
-<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;<span class="preprocessor">#ifndef commandline_parser_hpp</span></div>
-<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;<span class="preprocessor">#define commandline_parser_hpp</span></div>
-<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160; </div>
-<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div>
-<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
-<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
-<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;<span class="preprocessor">#include &lt;sstream&gt;</span></div>
-<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160; </div>
-<div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">   82</a></span>&#160;<span class="keyword">typedef</span> std::map&lt;std::string, std::string&gt; <a class="code" href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">arg_map</a>;</div>
-<div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="commandline__parser_8hpp.html#aaa5f58a702213e54fd726c598f89839f">   84</a></span>&#160;<span class="keyword">typedef</span> std::pair&lt;std::string, std::string&gt; <a class="code" href="commandline__parser_8hpp.html#aaa5f58a702213e54fd726c598f89839f">arg_element</a>;</div>
-<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160; </div>
-<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00089"></a><span class="lineno"><a class="line" href="classcommandline__parser.html">   89</a></span>&#160;<span class="keyword">class </span><a class="code" href="namespacecommandline__parser.html">commandline_parser</a> {</div>
-<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;<span class="keyword">public</span>:</div>
-<div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">   92</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">arg_map</a> <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>;</div>
-<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160; </div>
-<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#a37dd60a701dc2491f1bfd1782fc50e14">  101</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">arg_map</a> <a class="code" href="classcommandline__parser.html#a37dd60a701dc2491f1bfd1782fc50e14">parse_commands</a>(<span class="keyword">const</span> <span class="keywordtype">size_t</span> argc, <span class="keyword">const</span> <span class="keywordtype">char</span> * argv[]) {</div>
-<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="keywordflow">if</span> (argc == 0) {</div>
-<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;            <a class="code" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">help</a>();</div>
-<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;        }</div>
-<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160; </div>
-<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;        <a class="code" href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">arg_map</a> <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>;</div>
-<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160; </div>
-<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160; </div>
-<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 1; i &lt; argc; i++) {</div>
-<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;            std::string arg(argv[i]);</div>
-<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160; </div>
-<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;            <span class="keywordflow">if</span> (arg == <span class="stringliteral">&quot;-h&quot;</span>) {</div>
-<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;                <a class="code" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">help</a>();</div>
-<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;            } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;                <span class="keywordtype">size_t</span> eqpos = arg.find(<span class="charliteral">&#39;=&#39;</span>);</div>
-<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;                <span class="keywordflow">if</span> (eqpos != std::string::npos) {</div>
-<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;                    std::string key = arg.substr(0, eqpos);</div>
-<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;                    std::string value = arg.substr(eqpos + 1, std::string::npos);</div>
-<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160; </div>
-<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;                    <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>.insert(<a class="code" href="commandline__parser_8hpp.html#aaa5f58a702213e54fd726c598f89839f">arg_element</a>(key, value));</div>
-<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;                } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;                    <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>.insert(<a class="code" href="commandline__parser_8hpp.html#aaa5f58a702213e54fd726c598f89839f">arg_element</a>(arg, <span class="stringliteral">&quot;&quot;</span>));</div>
-<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;                }</div>
-<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;            }</div>
-<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;        }</div>
-<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160; </div>
-<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>;</div>
-<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    }</div>
-<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160; </div>
-<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00137"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#a61800ad900adb33e907e758118809e4b">  137</a></span>&#160;    <a class="code" href="classcommandline__parser.html#a61800ad900adb33e907e758118809e4b">commandline_parser</a>(<span class="keyword">const</span> <span class="keywordtype">size_t</span> argc, <span class="keyword">const</span> <span class="keywordtype">char</span> * argv[]) :</div>
-<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>(<a class="code" href="classcommandline__parser.html#a37dd60a701dc2491f1bfd1782fc50e14">parse_commands</a>(argc, argv)) {}</div>
-<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160; </div>
-<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00146"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#a3c7a8fb1895341ca1932108756066aaf">  146</a></span>&#160;    <span class="keywordtype">bool</span> <a class="code" href="classcommandline__parser.html#a3c7a8fb1895341ca1932108756066aaf">is_set</a>(<span class="keyword">const</span> std::string &amp;key)<span class="keyword"> const </span>{</div>
-<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>.find(key) != <a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>.end();</div>
-<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;    }</div>
-<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160; </div>
-<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;    <span class="keyword">template</span>&lt;<span class="keyword">typename</span> TYPE&gt;</div>
-<div class="line"><a name="l00157"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#aa10ce792d0a39f95b2cefc29f7cb24da">  157</a></span>&#160;    TYPE <a class="code" href="classcommandline__parser.html#aa10ce792d0a39f95b2cefc29f7cb24da">get</a>(<span class="keyword">const</span> std::string &amp;key)<span class="keyword"> const </span>{</div>
-<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;        <span class="keywordflow">if</span> (!<a class="code" href="classcommandline__parser.html#a3c7a8fb1895341ca1932108756066aaf">is_set</a>(key)) {</div>
-<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;            <a class="code" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">help</a>();</div>
-<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        }</div>
-<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160; </div>
-<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;        std::stringstream value_stream(<a class="code" href="classcommandline__parser.html#af42bcf4ad51488b02309ddab162eb72c">commands</a>.at(key));</div>
-<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;        TYPE temp;</div>
-<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;        value_stream &gt;&gt; temp;</div>
-<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160; </div>
-<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;        <span class="keywordflow">return</span> temp;</div>
-<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    }</div>
-<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; </div>
-<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">  172</a></span>&#160;    <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classcommandline__parser.html#ab41c04c32331b38ff7bda83ec343fa4f">help</a>() {</div>
-<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;<span class="comment">//                   &quot;                                        &#39;&#39;                                      &quot;</span></div>
-<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                    SIESTA TEST                                 &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Usage: xsiesta_test [-arg][=option] ...                                         &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Options:                                                                        &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;All options are displayes as [arg][takesoption][Discription]                    &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -h            N Display this information.                                     &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -wout_file    Y Path to the VMEC wout file.                                   &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -restart_file Y Path to the SIESTA restart file.                              &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -test_name    Y Name of the test to run.                                      &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -tol          Y Tolarance value.                                              &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -min          Y Minimum radial value.                                         &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -max          Y Maximum radial value.                                         &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -relative     N Use relative error.                                           &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -dump         N Dump values to the screen.                                    &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -u            Y Poloidal angle to dump.                                       &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;  -v            Y Toroidal angle to dump..                                      &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;                                                                                &quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;        std::cout &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160; </div>
-<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;        exit(0);</div>
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-<p>Contains module <a class="el" href="namespacecompression.html">compression</a>.  
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-  <div class="headertitle">
-<div class="title">data_parameters.f File Reference</div>  </div>
-</div><!--header-->
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-
-<p>Contains module <a class="el" href="namespacedata__parameters.html">data_parameters</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
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-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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-<tr class="separator:aef2c3fbb620ec73a343d52400c790d6b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a7cfa8da6dd006501b6c70d05b4961c14"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="separator:a491450e0d772225d91151608e1435846"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af93b4615faaf9cdb5b24afbf8248ec82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a91e48f0116225ae57dabdeb3a685cd00"><td class="memItemLeft" align="right" valign="top"><a id="a91e48f0116225ae57dabdeb3a685cd00"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacedata__parameters.html#a91e48f0116225ae57dabdeb3a685cd00">data_parameters::dir_prefix</a> = 'process_dir'</td></tr>
-<tr class="memdesc:a91e48f0116225ae57dabdeb3a685cd00"><td class="mdescLeft">&#160;</td><td class="mdescRight">Directory prefix name. <br /></td></tr>
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-<tr class="memitem:ae24bedff295bd1e0c16046e00dabe5af"><td class="memItemLeft" align="right" valign="top"><a id="ae24bedff295bd1e0c16046e00dabe5af"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacedata__parameters.html#ae24bedff295bd1e0c16046e00dabe5af">data_parameters::dir_prefix_len</a> = 14</td></tr>
-<tr class="memdesc:ae24bedff295bd1e0c16046e00dabe5af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Directory string length. <br /></td></tr>
-<tr class="separator:ae24bedff295bd1e0c16046e00dabe5af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0ad067f02a6e7999846c1fba76f38792"><td class="memItemLeft" align="right" valign="top"><a id="a0ad067f02a6e7999846c1fba76f38792"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacedata__parameters.html#a0ad067f02a6e7999846c1fba76f38792">data_parameters::max_sxrem_profiles</a> = 10</td></tr>
-<tr class="memdesc:a0ad067f02a6e7999846c1fba76f38792"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum sxrem profiles. Warning do not change this value before reading <a class="el" href="namespacemodel__state.html#aa6734485f5b7fbcd01df193d38ca40e3">model_state::model_state_sxrem_flag</a>. <br /></td></tr>
-<tr class="separator:a0ad067f02a6e7999846c1fba76f38792"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd4da7f97f57179af3465af7d21d4462"><td class="memItemLeft" align="right" valign="top"><a id="afd4da7f97f57179af3465af7d21d4462"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacedata__parameters.html#afd4da7f97f57179af3465af7d21d4462">data_parameters::max_gaussprocess</a> = 2 + max_sxrem_profiles</td></tr>
-<tr class="memdesc:afd4da7f97f57179af3465af7d21d4462"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of Gaussian Process signals. Total number of auxillary profiles. <br /></td></tr>
-<tr class="separator:afd4da7f97f57179af3465af7d21d4462"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacedata__parameters.html">data_parameters</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<div class="PageDoc"><div class="header">
-  <div class="headertitle">
-<div class="title">Deprecated List </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="textblock"><dl class="reflist">
-<dt>Subprogram <a class="el" href="namespacemagnetic__response.html#a19a9c4e03d34dd6cd6a3e7677b43c86c">magnetic_response::magnetic_response_20140928</a>  </dt>
-<dd><a class="anchor" id="_deprecated000001"></a>  </dd>
-<dt>Subprogram <a class="el" href="namespacemagnetic__response.html#a802b95c014d5b7807d5c855f23650a47">magnetic_response::nc_stell_sym</a>  </dt>
-<dd><a class="anchor" id="_deprecated000002"></a>  </dd>
-<dt>Subprogram <a class="el" href="namespacemagnetic__response.html#a8293da9b59bf6661dcc63c58c87c856f">magnetic_response::nc_use_shell</a>  </dt>
-<dd><a class="anchor" id="_deprecated000003"></a>  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a31674b0ebbae407f94a99371be9b0636">v3fit_input::model_sxrem_type</a>  </dt>
-<dd><a class="anchor" id="_deprecated000014"></a> Specify how soft x-ray emissivity is computed by the model.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a0b959b12e237e9d4266f269f4b67ca86">v3fit_input::n_sdata_o</a>  </dt>
-<dd><a class="anchor" id="_deprecated000015"></a> Number of observed signals.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a85e26804e0bad2a97fe7582c1db8768c">v3fit_input::pp_sxrem_af</a>  </dt>
-<dd><a class="anchor" id="_deprecated000013"></a> Array of af_coefficients soft x-ray emissvity profile splines  </dd>
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-</dd>
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-<dd><a class="anchor" id="_deprecated000006"></a> Force tolarance for minimization.  </dd>
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-<dd><a class="anchor" id="_deprecated000005"></a> Maximum number of iterations to run.  </dd>
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-<dd><a class="anchor" id="_deprecated000007"></a> Number of radial flux surfaces.  </dd>
-<dt>Subprogram <a class="el" href="namespacevmec__input.html#aff9b69c8776d7acba20f3ef7a7471e20">vmec_input::omp_num_threads</a>  </dt>
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-<tr class="separator:a4e5a8aaf7ad89030127eac8463199dc4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a9de92c91a7826d605980cb33897125f9"><td class="memItemLeft" align="right" valign="top">type(diagnostic_dot_coil) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a9de92c91a7826d605980cb33897125f9">diagnostic_dot::diagnostic_dot_parse_probe</a> (iou, line, line_number, is_tokamak, units)</td></tr>
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-<tr class="memdesc:aa5ee9853379e35c5f33aa088f1a38ddd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a point field measurement.  <a href="namespacediagnostic__dot.html#aa5ee9853379e35c5f33aa088f1a38ddd">More...</a><br /></td></tr>
-<tr class="separator:aa5ee9853379e35c5f33aa088f1a38ddd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot::diagnostic_dot_line_len</a> = 200</td></tr>
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-<tr class="memitem:a02402cf3f0f755ab658bd4b9e642a84b"><td class="memItemLeft" align="right" valign="top"><a id="a02402cf3f0f755ab658bd4b9e642a84b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a02402cf3f0f755ab658bd4b9e642a84b">diagnostic_dot::diagnostic_dot_id_name</a> = 30</td></tr>
-<tr class="memdesc:a02402cf3f0f755ab658bd4b9e642a84b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum id name. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacediagnostic__dot.html">diagnostic_dot</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
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-<div class="title">Magnetic Diagnostic Dot File </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#diagnostic_dot_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#diagnostic_dot_coil_spec_sec">Diagnostic Coil Specification</a></li>
-<li class="level1"><a href="#diagnostic_dot_key_sec">Keywords</a></li>
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-Introduction</h1>
-<p>This document contains information about the magnetic diagnostic specifications. Diagnostics are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3rfun__input.html#a70e0cfa6efc324b7fc9a75c848e5fb25">v3rfun_input::name_diagnostic_dot</a> variable of the name list input file.</p>
-<h1><a class="anchor" id="diagnostic_dot_coil_spec_sec"></a>
-Diagnostic Coil Specification</h1>
-<p>Every diagnostic coil specification looks like:<br  />
- <code>key_word</code><br  />
- <code>name</code><br  />
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-Keywords</h1>
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-<br  />
- Lines after ID:<br  />
- Arbitrary number of nodes, each consists of three reals.<br  />
-<br  />
- Description: A <code>flux_loop</code> is a closed filamentary polygon. Each line after the ID line contains the x, y, and z coordinates of one node. The last node need not be the same as the first node: the parser will ensure that the flux loop is closed. </td></tr>
-<tr>
-<td width="30%"><code>flux_loop_circular</code></td><td width="70%">A circular flux loop.<br  />
-<br  />
- Lines after ID:<br  />
- First line after ID: one real, the radius of the circle.<br  />
- Second line after ID: three reals, the x, y, z coordinates of the center of the circle.<br  />
- Third line after ID: three reals, the x, y, z components of the normal to the circle.<br  />
-<br  />
- Description: A flux_loop_circular is a filamentary circle. The parser takes care of the normalization of the normal vector. </td></tr>
-<tr>
-<td width="30%"><code>magnetic_probe</code></td><td width="70%">Point measurement of the magnetic field.<br  />
-<br  />
- Lines after ID:<br  />
- First line after ID: one real, the radius of the magnetic probe.<br  />
- Second line after ID: three reals, the x, y, z coordinates of probe position.<br  />
- Third line after ID: three reals, the x, y, z components of the normal to the probe.<br  />
-<br  />
- Description: A magnetic_probe is very similar to a small flux_loop_circular diagnostic. However, the signal for a magnetic_probe is a B field component (units in Tesla) rather than a magnetic flux (units Webers). The parser takes care of the normalization of the normal vector. </td></tr>
-<tr>
-<td width="30%"><code>magnetic_probe_tokamak</code></td><td width="70%">Point measurement of the magnetic field.<br  />
-<br  />
- Lines after ID:<br  />
- First line after ID: five reals: probe radius, major radius, toroidal angle (in degrees), z position, and orientation angle (in degrees).<br  />
-<br  />
- Description: A magnetic_probe_tokamak is very similar to a magnetic_probe. However, the parameterization is different. The normal to a magnetic_probe_tokamak lies in the Rhat-zhat plane. It has no component in the phi-hat direction. The orientation angle specifies the angle from the Rhat vector. </td></tr>
-<tr>
-<td width="30%"><code>rogowski</code></td><td width="70%">Rogowski coil.<br  />
-<br  />
- Lines after ID:<br  />
- First line after ID: two reals, the number of turns, and the cross-sectional area (in meter^2) of the Rogowski coil. Second through last lines after ID: arbitrary in number each containing three reals.<br  />
-<br  />
- Description: The guide curve for a rogowski is specified by giving node positions. Each of the second through last line after the ID line specifies a node position. The guide curve is made of straight line segments between the node positions. Note that the parser makes no assumption about whether or not a Rogowski coil guide curve is closed or not. Thus, a rogowski can model either a partial Rogowski coil, or a full Rogowski coil. The signal computed for a Rogowski is the line integrated B along the guide curve, divided by the length of the guide curve. The units are Tesla. </td></tr>
-<tr>
-<td width="30%"><code>b_rogowski</code></td><td width="70%">Same as a <code>rogowski</code>. </td></tr>
-<tr>
-<td width="30%"><code>i_rogowski</code></td><td width="70%">Same as a <code>rogowski</code> but with measuing current in Amperes. If this is a full rogowski, the signal is the total current enclosed. </td></tr>
-<tr>
-<td width="30%"><code>f_rogowski</code></td><td width="70%">Same as a <code>rogowski</code> but with measuing flux in Webers. </td></tr>
-<tr>
-<td width="30%"><code>s_rogowski</code></td><td width="70%">A rogowski defined by a series of segments connected in series to represent a single measurement. </td></tr>
-<tr>
-<td width="30%"><code>b_point_probe</code></td><td width="70%">Point measurement of the magnetic field in tesla.<br  />
-<br  />
- Lines after ID:<br  />
- First line after ID: three reals, the x, y, z coordinates of probe position.<br  />
- Second line after ID: three reals, the xhat, yhat, zhat components of the direction the probe measures in.<br  />
-<br  />
- Description: These probes differ from the magnetic probes by modling the probe as an exact point measurement insead of modeling as a loop of wire. The second vector direction defines the components that the probe reads. </td></tr>
-<tr>
-<td width="30%"><code>b_point_probe_cyl</code></td><td width="70%">Same as <code>b_point_probe</code> but defined in cylindrical coordinates. </td></tr>
-<tr>
-<td width="30%"><code>end_of_file</code></td><td width="70%">End of the file. </td></tr>
-</table>
-<h1><a class="anchor" id="diagnostic_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacediagnostic__dot.html">diagnostic_dot</a> module. </p>
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-<tr class="separator:a5d779683571c129302875d7409e1e23f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e6437945e1e49e36e1b9587c1616124"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a0e6437945e1e49e36e1b9587c1616124">ece::ece_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
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-<tr class="separator:a0e6437945e1e49e36e1b9587c1616124"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<!-- start footer part -->
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ac59e5722238eb63eed49d487c5666238"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an ECE diagnostic dot file.  <a href="namespaceece__dot.html#ac59e5722238eb63eed49d487c5666238">More...</a><br /></td></tr>
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-<tr class="memdesc:af5760aa2dcda718fd29735761f9cbaf0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse ECE diagnostic chord.  <a href="namespaceece__dot.html#af5760aa2dcda718fd29735761f9cbaf0">More...</a><br /></td></tr>
-<tr class="separator:af5760aa2dcda718fd29735761f9cbaf0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceece__dot.html">ece_dot</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/ece_dot_sec.html b/html/ece_dot_sec.html
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-Introduction</h1>
-<p>Diagnostic dot files specify geometric and auxiliary information about each diagnostic. Parsing of a diagnostic dot file begins by searching for a valid keyword. All lines before a valid keyword is reached are ignored allowing for comments and other information to be inserted in the file. Once a keyword is reached, the parsing becomes strict. The diagnostic description format is dependant on the specific keyword. All diagnostic dot files must end with an <code>end_of_file</code> keyword.</p>
-<p>This document contains information about the ECE chord specifications. Chords are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#af786af93e310aa065e95b891ae9cb5ab">v3fit_input::ece_dot_filename</a> variable of the name list input file. Chords are specified as two verticies in either meters or radians.</p>
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-<tr>
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-Chord Specification</h1>
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-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>x2(REAL) y2(REAL) z2(REAL)<br  />
-</code> <code>frequency(REAL)</code></p>
-<h1><a class="anchor" id="ece_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  An ECE chord specified in Cartesian coordinates.</span></div>
-<div class="line">ece_chord_xyz</div>
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-<div class="line">1.0 0.0 0.0</div>
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-<div class="line"><span class="comment">!  An ECE chord specified in Cylindrical coordinates.</span></div>
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-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
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-</div><!-- fragment --><h1><a class="anchor" id="ece_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespaceece__dot.html">ece_dot</a> modules. </p>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<li class="navelem"><a class="el" href="dir_c56891cdec73a15790d380939a7a6e34.html">V3FIT</a></li><li class="navelem"><a class="el" href="dir_9685e927764a102f62dca2400b4ec5d4.html">Sources</a></li>  </ul>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<p>Contains module <a class="el" href="namespaceemission.html">emission</a>.  
-<a href="#details">More...</a></p>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae6c9bf4b2afee77d7a3d9eb7eb569571"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ac0104e141d14e10eac280565cf5f788f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespaceemission.html">emission</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#emission_file_intro_sec">Introduction</a></li>
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-Introduction</h1>
-<p>This page documents the NetCDF file format for the Soft X-Ray emission file. This file contains all the information to compute the Soft X-Ray emission from physical parameters. To allow for mutiple cameras and multi-color systems, transmission and absorption functions need to be defined for each camera.</p>
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-<tr>
-<td width="20%"><code>Variable</code></td><td width="50%">Description</td><td width="30%">Dimension</td></tr>
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-<tr>
-<td width="20%"><code>te_start</code></td><td width="50%">Initial temperature.</td><td width="30%">Scalar </td></tr>
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-<td width="20%"><code>te_step</code></td><td width="50%">Temperature step.</td><td width="30%">Scalar </td></tr>
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-<td width="20%"><code>emissivity</code></td><td width="50%">Soft X-Ray emission function.</td><td width="30%">(Number Cameras, Number Energies) </td></tr>
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-
-<p>Contains module <a class="el" href="namespaceequilibrium.html">equilibrium</a>.  
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-<tr class="separator:a71a4692b96c812902e37409d40c48461"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a341ac92d65e33cca9831c71c521b5791"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>.  <a href="namespaceequilibrium.html#a341ac92d65e33cca9831c71c521b5791">More...</a><br /></td></tr>
-<tr class="separator:a341ac92d65e33cca9831c71c521b5791"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7f1ca9df542f741d351f60074e38fdd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa7f1ca9df542f741d351f60074e38fdd">equilibrium::equilibrium_destruct</a> (this)</td></tr>
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-<tr class="separator:aa7f1ca9df542f741d351f60074e38fdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae25254f1165258631e26d4a34b34c206"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium::equilibrium_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae25254f1165258631e26d4a34b34c206"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">More...</a><br /></td></tr>
-<tr class="separator:ae25254f1165258631e26d4a34b34c206"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa87a9dd2aa8a5b0efa749d566b57510b">equilibrium::equilibrium_set_magnetic_cache_response</a> (this, response_object, state_flags)</td></tr>
-<tr class="memdesc:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the magnetic cache of the equilibrium for the magnetic response.  <a href="namespaceequilibrium.html#aa87a9dd2aa8a5b0efa749d566b57510b">More...</a><br /></td></tr>
-<tr class="separator:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a071ab01f0bd3d33683db0e9f642e3d8a">equilibrium::equilibrium_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the magnetic cache of the equilibrium for points.  <a href="namespaceequilibrium.html#a071ab01f0bd3d33683db0e9f642e3d8a">More...</a><br /></td></tr>
-<tr class="separator:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="memItemLeft" align="right" valign="top">recursive character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a817f1fd0217a2fe0774efcfebbbbc72c">equilibrium::equilibrium_get_type</a> (this)</td></tr>
-<tr class="memdesc:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespaceequilibrium.html#a817f1fd0217a2fe0774efcfebbbbc72c">More...</a><br /></td></tr>
-<tr class="separator:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium::equilibrium_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">More...</a><br /></td></tr>
-<tr class="separator:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53677debed221aa3ab4a836e965e9a41"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium::equilibrium_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:a53677debed221aa3ab4a836e965e9a41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the name of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">More...</a><br /></td></tr>
-<tr class="separator:a53677debed221aa3ab4a836e965e9a41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9f245806e056deef11873271976af9eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium::equilibrium_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a9f245806e056deef11873271976af9eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the value of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">More...</a><br /></td></tr>
-<tr class="separator:a9f245806e056deef11873271976af9eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">equilibrium::equilibrium_get_gp_ne_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">More...</a><br /></td></tr>
-<tr class="separator:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">equilibrium::equilibrium_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density profile af array.  <a href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">More...</a><br /></td></tr>
-<tr class="separator:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad53a67218ebb9f98232331c17e81054b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">equilibrium::equilibrium_get_gp_ne_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:ad53a67218ebb9f98232331c17e81054b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">More...</a><br /></td></tr>
-<tr class="separator:ad53a67218ebb9f98232331c17e81054b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1f8b1beb3be65794fe26c15da0e44e20"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">equilibrium::equilibrium_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a1f8b1beb3be65794fe26c15da0e44e20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">More...</a><br /></td></tr>
-<tr class="separator:a1f8b1beb3be65794fe26c15da0e44e20"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e0710d9648460584c1371ce2cac1e08"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">equilibrium::equilibrium_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a1e0710d9648460584c1371ce2cac1e08"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">More...</a><br /></td></tr>
-<tr class="separator:a1e0710d9648460584c1371ce2cac1e08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a60b8c388b37c1b3d70e7b04e4bad489e">equilibrium::equilibrium_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespaceequilibrium.html#a60b8c388b37c1b3d70e7b04e4bad489e">More...</a><br /></td></tr>
-<tr class="separator:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3822a738d14872a1c63368f209493b1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af3822a738d14872a1c63368f209493b1">equilibrium::equilibrium_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:af3822a738d14872a1c63368f209493b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a radial position.  <a href="namespaceequilibrium.html#af3822a738d14872a1c63368f209493b1">More...</a><br /></td></tr>
-<tr class="separator:af3822a738d14872a1c63368f209493b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e5934e7ce31abb107f397cc2a3c8895"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">equilibrium::equilibrium_get_gp_te_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a2e5934e7ce31abb107f397cc2a3c8895"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">More...</a><br /></td></tr>
-<tr class="separator:a2e5934e7ce31abb107f397cc2a3c8895"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">equilibrium::equilibrium_get_te_af</a> (this)</td></tr>
-<tr class="memdesc:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature profile af array.  <a href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">More...</a><br /></td></tr>
-<tr class="separator:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a236332f09fc1597b62674fcb1d5392a1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">equilibrium::equilibrium_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a236332f09fc1597b62674fcb1d5392a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">More...</a><br /></td></tr>
-<tr class="separator:a236332f09fc1597b62674fcb1d5392a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium::equilibrium_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">More...</a><br /></td></tr>
-<tr class="separator:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa33954648a43a182ee9c771679755d9a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">equilibrium::equilibrium_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:aa33954648a43a182ee9c771679755d9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">More...</a><br /></td></tr>
-<tr class="separator:aa33954648a43a182ee9c771679755d9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa991dfc32d3ade420caa527fc14acf5"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#afa991dfc32d3ade420caa527fc14acf5">equilibrium::equilibrium_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:afa991dfc32d3ade420caa527fc14acf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespaceequilibrium.html#afa991dfc32d3ade420caa527fc14acf5">More...</a><br /></td></tr>
-<tr class="separator:afa991dfc32d3ade420caa527fc14acf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3428a3b6b5837e711921ebe3fceaf412"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3428a3b6b5837e711921ebe3fceaf412">equilibrium::equilibrium_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a3428a3b6b5837e711921ebe3fceaf412"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a radial position.  <a href="namespaceequilibrium.html#a3428a3b6b5837e711921ebe3fceaf412">More...</a><br /></td></tr>
-<tr class="separator:a3428a3b6b5837e711921ebe3fceaf412"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0532f8e915d83525f326d9b7c581a35e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">equilibrium::equilibrium_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a0532f8e915d83525f326d9b7c581a35e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">More...</a><br /></td></tr>
-<tr class="separator:a0532f8e915d83525f326d9b7c581a35e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a407d4263b4a24d72f683f7beecff4620"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">equilibrium::equilibrium_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:a407d4263b4a24d72f683f7beecff4620"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature profile af array.  <a href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">More...</a><br /></td></tr>
-<tr class="separator:a407d4263b4a24d72f683f7beecff4620"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">equilibrium::equilibrium_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">More...</a><br /></td></tr>
-<tr class="separator:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebf430af623ee696d366dcfb93022e7c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium::equilibrium_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aebf430af623ee696d366dcfb93022e7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">More...</a><br /></td></tr>
-<tr class="separator:aebf430af623ee696d366dcfb93022e7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acdd822f6042f77c085ed93034101f7da"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">equilibrium::equilibrium_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:acdd822f6042f77c085ed93034101f7da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">More...</a><br /></td></tr>
-<tr class="separator:acdd822f6042f77c085ed93034101f7da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d4c6548457108373fe2e9daee2f1f14"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1d4c6548457108373fe2e9daee2f1f14">equilibrium::equilibrium_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a1d4c6548457108373fe2e9daee2f1f14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespaceequilibrium.html#a1d4c6548457108373fe2e9daee2f1f14">More...</a><br /></td></tr>
-<tr class="separator:a1d4c6548457108373fe2e9daee2f1f14"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acb7c48ff5b0f7db28ffb917ca51beb4f">equilibrium::equilibrium_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a radial position.  <a href="namespaceequilibrium.html#acb7c48ff5b0f7db28ffb917ca51beb4f">More...</a><br /></td></tr>
-<tr class="separator:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4d9c458221a534f7d60a8ce37fe8176e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">equilibrium::equilibrium_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:a4d9c458221a534f7d60a8ce37fe8176e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emissivity gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">More...</a><br /></td></tr>
-<tr class="separator:a4d9c458221a534f7d60a8ce37fe8176e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">equilibrium::equilibrium_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity profile af array.  <a href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">More...</a><br /></td></tr>
-<tr class="separator:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1148888b36cd9805341b7b6b7d8551db"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">equilibrium::equilibrium_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:a1148888b36cd9805341b7b6b7d8551db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">More...</a><br /></td></tr>
-<tr class="separator:a1148888b36cd9805341b7b6b7d8551db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2033d74bc0923a953475cb1a522de1c6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium::equilibrium_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:a2033d74bc0923a953475cb1a522de1c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">More...</a><br /></td></tr>
-<tr class="separator:a2033d74bc0923a953475cb1a522de1c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a797743172f6b65ed4bdded8b6dce420c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium::equilibrium_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:a797743172f6b65ed4bdded8b6dce420c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">More...</a><br /></td></tr>
-<tr class="separator:a797743172f6b65ed4bdded8b6dce420c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f0300c0005dac19977a8e5577cdb3d4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4f0300c0005dac19977a8e5577cdb3d4">equilibrium::equilibrium_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:a4f0300c0005dac19977a8e5577cdb3d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespaceequilibrium.html#a4f0300c0005dac19977a8e5577cdb3d4">More...</a><br /></td></tr>
-<tr class="separator:a4f0300c0005dac19977a8e5577cdb3d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab11a58272050c4781b094ac7dd37fa57"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab11a58272050c4781b094ac7dd37fa57">equilibrium::equilibrium_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:ab11a58272050c4781b094ac7dd37fa57"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a radial position.  <a href="namespaceequilibrium.html#ab11a58272050c4781b094ac7dd37fa57">More...</a><br /></td></tr>
-<tr class="separator:ab11a58272050c4781b094ac7dd37fa57"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a63ef3e466a352bb9b1e36673f07daf"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a7a63ef3e466a352bb9b1e36673f07daf">equilibrium::equilibrium_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:a7a63ef3e466a352bb9b1e36673f07daf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespaceequilibrium.html#a7a63ef3e466a352bb9b1e36673f07daf">More...</a><br /></td></tr>
-<tr class="separator:a7a63ef3e466a352bb9b1e36673f07daf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a919f2f345ba01dc5c557c50f69c17227"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a919f2f345ba01dc5c557c50f69c17227">equilibrium::equilibrium_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a919f2f345ba01dc5c557c50f69c17227"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a radial position.  <a href="namespaceequilibrium.html#a919f2f345ba01dc5c557c50f69c17227">More...</a><br /></td></tr>
-<tr class="separator:a919f2f345ba01dc5c557c50f69c17227"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a07761f9e562032066052a4cdf608edcb"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a07761f9e562032066052a4cdf608edcb">equilibrium::equilibrium_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a07761f9e562032066052a4cdf608edcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespaceequilibrium.html#a07761f9e562032066052a4cdf608edcb">More...</a><br /></td></tr>
-<tr class="separator:a07761f9e562032066052a4cdf608edcb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c72df061afb532ff36b388f652f08c9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1c72df061afb532ff36b388f652f08c9">equilibrium::equilibrium_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a1c72df061afb532ff36b388f652f08c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespaceequilibrium.html#a1c72df061afb532ff36b388f652f08c9">More...</a><br /></td></tr>
-<tr class="separator:a1c72df061afb532ff36b388f652f08c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6761083f9efa93db8f53826785bce684"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium::equilibrium_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a6761083f9efa93db8f53826785bce684"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">More...</a><br /></td></tr>
-<tr class="separator:a6761083f9efa93db8f53826785bce684"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adbb086288f87bedec9abed1d02888dfc"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">equilibrium::equilibrium_get_magnetic_volume_rgrid</a> (this)</td></tr>
-<tr class="memdesc:adbb086288f87bedec9abed1d02888dfc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration radial grid points.  <a href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">More...</a><br /></td></tr>
-<tr class="separator:adbb086288f87bedec9abed1d02888dfc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a58181cf1609d1dafa8e377746b4aafe3"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">equilibrium::equilibrium_get_magnetic_volume_zgrid</a> (this)</td></tr>
-<tr class="memdesc:a58181cf1609d1dafa8e377746b4aafe3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration z grid points.  <a href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">More...</a><br /></td></tr>
-<tr class="separator:a58181cf1609d1dafa8e377746b4aafe3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4beab3efa39f5999f28f554b089a32d6"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">equilibrium::equilibrium_get_magnetic_volume_jrgrid</a> (this)</td></tr>
-<tr class="memdesc:a4beab3efa39f5999f28f554b089a32d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jr grid points.  <a href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">More...</a><br /></td></tr>
-<tr class="separator:a4beab3efa39f5999f28f554b089a32d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab796210f7567a4b026b031859fa1e6ee"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">equilibrium::equilibrium_get_magnetic_volume_jphigrid</a> (this)</td></tr>
-<tr class="memdesc:ab796210f7567a4b026b031859fa1e6ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jphi grid points.  <a href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">More...</a><br /></td></tr>
-<tr class="separator:ab796210f7567a4b026b031859fa1e6ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae1aae7df78c798deb4408bc38acd2b62"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">equilibrium::equilibrium_get_magnetic_volume_jzgrid</a> (this)</td></tr>
-<tr class="memdesc:ae1aae7df78c798deb4408bc38acd2b62"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jz grid points.  <a href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">More...</a><br /></td></tr>
-<tr class="separator:ae1aae7df78c798deb4408bc38acd2b62"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">equilibrium::equilibrium_get_volume_int_element</a> (this)</td></tr>
-<tr class="memdesc:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume integration element.  <a href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">More...</a><br /></td></tr>
-<tr class="separator:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5995f889d642a7b1e2cde874f9c3670"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">equilibrium::equilibrium_get_con_surface_krgrid</a> (this)</td></tr>
-<tr class="memdesc:ad5995f889d642a7b1e2cde874f9c3670"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kr grid points.  <a href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">More...</a><br /></td></tr>
-<tr class="separator:ad5995f889d642a7b1e2cde874f9c3670"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0ddc62a0a73b6923d40e25235dcd608"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">equilibrium::equilibrium_get_con_surface_kphigrid</a> (this)</td></tr>
-<tr class="memdesc:ae0ddc62a0a73b6923d40e25235dcd608"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kphi grid points.  <a href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">More...</a><br /></td></tr>
-<tr class="separator:ae0ddc62a0a73b6923d40e25235dcd608"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05f9de6ea21b9862f05c7497b16ebc93"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">equilibrium::equilibrium_get_con_surface_kzgrid</a> (this)</td></tr>
-<tr class="memdesc:a05f9de6ea21b9862f05c7497b16ebc93"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kz grid points.  <a href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">More...</a><br /></td></tr>
-<tr class="separator:a05f9de6ea21b9862f05c7497b16ebc93"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae57f6af254fdd6577cc47cb3e28b285e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae57f6af254fdd6577cc47cb3e28b285e">equilibrium::equilibrium_get_area_int_element</a> (this)</td></tr>
-<tr class="memdesc:ae57f6af254fdd6577cc47cb3e28b285e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get area integration element.  <a href="namespaceequilibrium.html#ae57f6af254fdd6577cc47cb3e28b285e">More...</a><br /></td></tr>
-<tr class="separator:ae57f6af254fdd6577cc47cb3e28b285e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa19f91d7d7db0a845b59f5106dbe3778"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">equilibrium::equilibrium_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
-<tr class="memdesc:aa19f91d7d7db0a845b59f5106dbe3778"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external current.  <a href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">More...</a><br /></td></tr>
-<tr class="separator:aa19f91d7d7db0a845b59f5106dbe3778"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5e34a9e88e40299503f1f4de95ff413"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">equilibrium::equilibrium_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:ac5e34a9e88e40299503f1f4de95ff413"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">More...</a><br /></td></tr>
-<tr class="separator:ac5e34a9e88e40299503f1f4de95ff413"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium::equilibrium_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">More...</a><br /></td></tr>
-<tr class="separator:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a382a991c74aed8d63e537d6b49b66918"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">equilibrium::equilibrium_get_grid_start</a> (this)</td></tr>
-<tr class="memdesc:a382a991c74aed8d63e537d6b49b66918"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get start of the radial grid.  <a href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">More...</a><br /></td></tr>
-<tr class="separator:a382a991c74aed8d63e537d6b49b66918"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59825e329aec07515b5ebedf413a2ff4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a59825e329aec07515b5ebedf413a2ff4">equilibrium::equilibrium_get_grid_stop</a> (this)</td></tr>
-<tr class="memdesc:a59825e329aec07515b5ebedf413a2ff4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get stop of the radial grid.  <a href="namespaceequilibrium.html#a59825e329aec07515b5ebedf413a2ff4">More...</a><br /></td></tr>
-<tr class="separator:a59825e329aec07515b5ebedf413a2ff4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">equilibrium::equilibrium_is_scaler_value</a> (this, id)</td></tr>
-<tr class="memdesc:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a scaler value.  <a href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">More...</a><br /></td></tr>
-<tr class="separator:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">equilibrium::equilibrium_is_2d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 2d array.  <a href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">More...</a><br /></td></tr>
-<tr class="separator:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab34978d83d0ca311e835f259912979e0"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium::equilibrium_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:ab34978d83d0ca311e835f259912979e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">More...</a><br /></td></tr>
-<tr class="separator:ab34978d83d0ca311e835f259912979e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7549affbf460dbc78e762e99b6ce58de"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">equilibrium::equilibrium_is_using_point</a> (this)</td></tr>
-<tr class="memdesc:a7549affbf460dbc78e762e99b6ce58de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a the point magnetics are being used.  <a href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">More...</a><br /></td></tr>
-<tr class="separator:a7549affbf460dbc78e762e99b6ce58de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae303206d825ca2ea689dcda3fa889a80"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">equilibrium::equilibrium_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae303206d825ca2ea689dcda3fa889a80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the equilibrium.  <a href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">More...</a><br /></td></tr>
-<tr class="separator:ae303206d825ca2ea689dcda3fa889a80"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af19a9f34a7786fd3cb34acf466c50d5f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af19a9f34a7786fd3cb34acf466c50d5f">equilibrium::equilibrium_read_vac_file</a> (this, index, eq_comm)</td></tr>
-<tr class="memdesc:af19a9f34a7786fd3cb34acf466c50d5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the vacuum magnetic field file.  <a href="namespaceequilibrium.html#af19a9f34a7786fd3cb34acf466c50d5f">More...</a><br /></td></tr>
-<tr class="separator:af19a9f34a7786fd3cb34acf466c50d5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53216bd25b330737a77a7638a9e43303"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a53216bd25b330737a77a7638a9e43303">equilibrium::equilibrium_save_state</a> (this)</td></tr>
-<tr class="memdesc:a53216bd25b330737a77a7638a9e43303"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespaceequilibrium.html#a53216bd25b330737a77a7638a9e43303">More...</a><br /></td></tr>
-<tr class="separator:a53216bd25b330737a77a7638a9e43303"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a032df1c41a8aa23eb9b8d7434118a472"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a032df1c41a8aa23eb9b8d7434118a472">equilibrium::equilibrium_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a032df1c41a8aa23eb9b8d7434118a472"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespaceequilibrium.html#a032df1c41a8aa23eb9b8d7434118a472">More...</a><br /></td></tr>
-<tr class="separator:a032df1c41a8aa23eb9b8d7434118a472"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium::equilibrium_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">More...</a><br /></td></tr>
-<tr class="separator:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84e1df0703c7493f444fa5dc0a392d34"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium::equilibrium_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a84e1df0703c7493f444fa5dc0a392d34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">More...</a><br /></td></tr>
-<tr class="separator:a84e1df0703c7493f444fa5dc0a392d34"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab1a77f62a029a487c5bb29b041e63482"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab1a77f62a029a487c5bb29b041e63482">equilibrium::equilibrium_def_result</a> (this, result_ncid, maxnsetps_dim_id)</td></tr>
-<tr class="memdesc:ab1a77f62a029a487c5bb29b041e63482"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespaceequilibrium.html#ab1a77f62a029a487c5bb29b041e63482">More...</a><br /></td></tr>
-<tr class="separator:ab1a77f62a029a487c5bb29b041e63482"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd20e3a5ae2c924b620d654c076dc81e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">equilibrium::equilibrium_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:acd20e3a5ae2c924b620d654c076dc81e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">More...</a><br /></td></tr>
-<tr class="separator:acd20e3a5ae2c924b620d654c076dc81e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a502ea3221e3de780f53e85f8832eca33"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">equilibrium::equilibrium_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a502ea3221e3de780f53e85f8832eca33"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">More...</a><br /></td></tr>
-<tr class="separator:a502ea3221e3de780f53e85f8832eca33"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a64fa2ba707e4d8779a502a602b8218a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a9b24c42a5f7fe364a234534689209c0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespaceextcurz.html#a9b24c42a5f7fe364a234534689209c0a">More...</a><br /></td></tr>
-<tr class="separator:a9b24c42a5f7fe364a234534689209c0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<p>Contains module <a class="el" href="namespacefile__opts.html">file_opts</a>.  
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-<tr class="separator:aa53312bc8b319948cf70e47974073d4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae54f2f1009cfa2dadf917d1b16ab8753"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacefourier_1_1check.html">fourier::check</a></td></tr>
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-<tr class="memdesc:a35c0f441cadb0006a1d10031283535a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object.  <a href="namespacefourier.html#a35c0f441cadb0006a1d10031283535a8">More...</a><br /></td></tr>
-<tr class="separator:a35c0f441cadb0006a1d10031283535a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ac68c96514704e40ab8b27470b4cf21"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a5ac68c96514704e40ab8b27470b4cf21">fourier::fourier_tomnsp_3d</a> (this, xuv, xmn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a5ac68c96514704e40ab8b27470b4cf21"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a quantity from real to fourier space in parallel.  <a href="namespacefourier.html#a5ac68c96514704e40ab8b27470b4cf21">More...</a><br /></td></tr>
-<tr class="separator:a5ac68c96514704e40ab8b27470b4cf21"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a500f54a6328d5c7e34a891871425e8db"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a500f54a6328d5c7e34a891871425e8db">fourier::fourier_tomnsp_3d_pest</a> (this, xuv, xmn, lmns, lmnc,</td></tr>
-<tr class="memdesc:a500f54a6328d5c7e34a891871425e8db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a quantity from real to fourier space in pest coordinates.  <a href="namespacefourier.html#a500f54a6328d5c7e34a891871425e8db">More...</a><br /></td></tr>
-<tr class="separator:a500f54a6328d5c7e34a891871425e8db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1624922e688e9d0d4dc3817e96dd75ae"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a1624922e688e9d0d4dc3817e96dd75ae">fourier::fourier_tomnsp_2d</a> (this, xuv, xmn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a1624922e688e9d0d4dc3817e96dd75ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform a 2D quantity to fourier space.  <a href="namespacefourier.html#a1624922e688e9d0d4dc3817e96dd75ae">More...</a><br /></td></tr>
-<tr class="separator:a1624922e688e9d0d4dc3817e96dd75ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af669d2453ff1041cfbcccae55bad9f7b"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#af669d2453ff1041cfbcccae55bad9f7b">fourier::fourier_tomnsp_2d_pest</a> (this, xuv, xmn, lambda, dup</td></tr>
-<tr class="memdesc:af669d2453ff1041cfbcccae55bad9f7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform a 2D quantity to fourier space.  <a href="namespacefourier.html#af669d2453ff1041cfbcccae55bad9f7b">More...</a><br /></td></tr>
-<tr class="separator:af669d2453ff1041cfbcccae55bad9f7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acac8a2289d22906b1e06baed62d550af"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#acac8a2289d22906b1e06baed62d550af">fourier::fourier_tomnsp_2d_u</a> (this, xuv)</td></tr>
-<tr class="memdesc:acac8a2289d22906b1e06baed62d550af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum over the poloidal part.  <a href="namespacefourier.html#acac8a2289d22906b1e06baed62d550af">More...</a><br /></td></tr>
-<tr class="separator:acac8a2289d22906b1e06baed62d550af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9cb9afaad547575a84000f0b4d2e8e9c"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a9cb9afaad547575a84000f0b4d2e8e9c">fourier::fourier_tomnsp_2d_u_pest</a> (this, xuv, lambda, dupdu,</td></tr>
-<tr class="memdesc:a9cb9afaad547575a84000f0b4d2e8e9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum over the poloidal part.  <a href="namespacefourier.html#a9cb9afaad547575a84000f0b4d2e8e9c">More...</a><br /></td></tr>
-<tr class="separator:a9cb9afaad547575a84000f0b4d2e8e9c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9cab14517df7e98ba1340143b44acb6f"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a9cab14517df7e98ba1340143b44acb6f">fourier::fourier_tomnsp_2d_v</a> (this, xmn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a9cab14517df7e98ba1340143b44acb6f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum over toroidal angle.  <a href="namespacefourier.html#a9cab14517df7e98ba1340143b44acb6f">More...</a><br /></td></tr>
-<tr class="separator:a9cab14517df7e98ba1340143b44acb6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a077b192acbab552a945f1382c85ca9fc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a077b192acbab552a945f1382c85ca9fc">fourier::fourier_toijsp_3d</a> (this, xmn, xuv, dflag, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a077b192acbab552a945f1382c85ca9fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a quantity from fourier to real space in parallel.  <a href="namespacefourier.html#a077b192acbab552a945f1382c85ca9fc">More...</a><br /></td></tr>
-<tr class="separator:a077b192acbab552a945f1382c85ca9fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a27f5162fff4e2bd12c4a1130eb4aac3e">fourier::fourier_toijsp_2d</a> (this, xmn, xuv, dflag, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform a 2D quantity to real space.  <a href="namespacefourier.html#a27f5162fff4e2bd12c4a1130eb4aac3e">More...</a><br /></td></tr>
-<tr class="separator:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af88798b860cb38f460b0e167de3de12b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#af88798b860cb38f460b0e167de3de12b">fourier::fourier_get_origin</a> (this, xuv, mode, asym)</td></tr>
-<tr class="memdesc:af88798b860cb38f460b0e167de3de12b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the origin value of a half-mesh quantity.  <a href="namespacefourier.html#af88798b860cb38f460b0e167de3de12b">More...</a><br /></td></tr>
-<tr class="separator:af88798b860cb38f460b0e167de3de12b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed046e4607a3671eb9be0c2ef2a375eb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#aed046e4607a3671eb9be0c2ef2a375eb">fourier::fourier_round_trig</a> (cosi, sini)</td></tr>
-<tr class="memdesc:aed046e4607a3671eb9be0c2ef2a375eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Round trig values to whole number for near numbers.  <a href="namespacefourier.html#aed046e4607a3671eb9be0c2ef2a375eb">More...</a><br /></td></tr>
-<tr class="separator:aed046e4607a3671eb9be0c2ef2a375eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ab15e4ffa2fcfa91b1b7372684bbfc30a">fourier::fourier_get_index</a> (this, n)</td></tr>
-<tr class="memdesc:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="mdescLeft">&#160;</td><td class="mdescRight">The the index position of the toroidal mode if it exists.  <a href="namespacefourier.html#ab15e4ffa2fcfa91b1b7372684bbfc30a">More...</a><br /></td></tr>
-<tr class="separator:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4331822c74c9060f004e2cc2186a058f"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a4331822c74c9060f004e2cc2186a058f">fourier::test_fourier</a> ()</td></tr>
-<tr class="memdesc:a4331822c74c9060f004e2cc2186a058f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Test fourier routines.  <a href="namespacefourier.html#a4331822c74c9060f004e2cc2186a058f">More...</a><br /></td></tr>
-<tr class="separator:a4331822c74c9060f004e2cc2186a058f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a41e6c5528ec17d73f36345622667c8ae"><td class="memItemLeft" align="right" valign="top"><a id="a41e6c5528ec17d73f36345622667c8ae"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a41e6c5528ec17d73f36345622667c8ae">fourier::f_cos</a> = 0</td></tr>
-<tr class="memdesc:a41e6c5528ec17d73f36345622667c8ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cosine parity. <br /></td></tr>
-<tr class="separator:a41e6c5528ec17d73f36345622667c8ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae4d54d71b6f5a2a4ca9816d41b15136c"><td class="memItemLeft" align="right" valign="top"><a id="ae4d54d71b6f5a2a4ca9816d41b15136c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae4d54d71b6f5a2a4ca9816d41b15136c">fourier::f_sin</a> = 1</td></tr>
-<tr class="memdesc:ae4d54d71b6f5a2a4ca9816d41b15136c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sine parity. <br /></td></tr>
-<tr class="separator:ae4d54d71b6f5a2a4ca9816d41b15136c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aef77174c15ce7415c96e6098a2b77156"><td class="memItemLeft" align="right" valign="top"><a id="aef77174c15ce7415c96e6098a2b77156"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#aef77174c15ce7415c96e6098a2b77156">fourier::f_none</a> = 0</td></tr>
-<tr class="memdesc:aef77174c15ce7415c96e6098a2b77156"><td class="mdescLeft">&#160;</td><td class="mdescRight">Do not sum fouier real space transformed quantity. This is used when a stellarator symmetric parity is being converted to real space. <br /></td></tr>
-<tr class="separator:aef77174c15ce7415c96e6098a2b77156"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac353df5825590202d5c7a2de3688e5f0"><td class="memItemLeft" align="right" valign="top"><a id="ac353df5825590202d5c7a2de3688e5f0"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ac353df5825590202d5c7a2de3688e5f0">fourier::f_ds</a> = 1</td></tr>
-<tr class="memdesc:ac353df5825590202d5c7a2de3688e5f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial derivative flag. <br /></td></tr>
-<tr class="separator:ac353df5825590202d5c7a2de3688e5f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="memItemLeft" align="right" valign="top"><a id="a60bc38ec9f367c4b73bc5badbcc3d0a7"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">fourier::f_du</a> = 2</td></tr>
-<tr class="memdesc:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Poloidal derivative flag. <br /></td></tr>
-<tr class="separator:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed197cd20f5735b408f831cf2f9b3799"><td class="memItemLeft" align="right" valign="top"><a id="aed197cd20f5735b408f831cf2f9b3799"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">fourier::f_dv</a> = 4</td></tr>
-<tr class="memdesc:aed197cd20f5735b408f831cf2f9b3799"><td class="mdescLeft">&#160;</td><td class="mdescRight">Toroidal derivative flag. <br /></td></tr>
-<tr class="separator:aed197cd20f5735b408f831cf2f9b3799"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a380aa7707832d4030eccb0830068948d"><td class="memItemLeft" align="right" valign="top"><a id="a380aa7707832d4030eccb0830068948d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a380aa7707832d4030eccb0830068948d">fourier::f_dudv</a> = IOR(f_du, f_dv)</td></tr>
-<tr class="memdesc:a380aa7707832d4030eccb0830068948d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Combined toroidal and poloidal derivatives. <br /></td></tr>
-<tr class="separator:a380aa7707832d4030eccb0830068948d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a35531eaf8acef68309d9ac9470dda0bc"><td class="memItemLeft" align="right" valign="top"><a id="a35531eaf8acef68309d9ac9470dda0bc"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a35531eaf8acef68309d9ac9470dda0bc">fourier::f_sum</a> = 8</td></tr>
-<tr class="memdesc:a35531eaf8acef68309d9ac9470dda0bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum fouier real space transformed quantity. This is used when a non-stellarator symmetric parity is being converted to real space. <br /></td></tr>
-<tr class="separator:a35531eaf8acef68309d9ac9470dda0bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa7de072427fc6454e37458d7680f172"><td class="memItemLeft" align="right" valign="top"><a id="afa7de072427fc6454e37458d7680f172"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#afa7de072427fc6454e37458d7680f172">fourier::f_jac</a> = 16</td></tr>
-<tr class="memdesc:afa7de072427fc6454e37458d7680f172"><td class="mdescLeft">&#160;</td><td class="mdescRight">Quantity, contains jacobian. <br /></td></tr>
-<tr class="separator:afa7de072427fc6454e37458d7680f172"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0023db38a18486c4716f09578cb71b8"><td class="memItemLeft" align="right" valign="top"><a id="ae0023db38a18486c4716f09578cb71b8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae0023db38a18486c4716f09578cb71b8">fourier::f_con</a> = 32</td></tr>
-<tr class="memdesc:ae0023db38a18486c4716f09578cb71b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant basis. <br /></td></tr>
-<tr class="separator:ae0023db38a18486c4716f09578cb71b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="memItemLeft" align="right" valign="top"><a id="ae25c012d089b70bc7f4c1a8bad0e7b82"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae25c012d089b70bc7f4c1a8bad0e7b82">fourier::b_ds</a> = 0</td></tr>
-<tr class="memdesc:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#ac353df5825590202d5c7a2de3688e5f0">f_ds</a> flag. <br /></td></tr>
-<tr class="separator:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b777ae0dba1e815ae50603e7af866f8"><td class="memItemLeft" align="right" valign="top"><a id="a6b777ae0dba1e815ae50603e7af866f8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a6b777ae0dba1e815ae50603e7af866f8">fourier::b_du</a> = 1</td></tr>
-<tr class="memdesc:a6b777ae0dba1e815ae50603e7af866f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">f_du</a> flag. <br /></td></tr>
-<tr class="separator:a6b777ae0dba1e815ae50603e7af866f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7fd44450246a6feb4a9530f61656e806"><td class="memItemLeft" align="right" valign="top"><a id="a7fd44450246a6feb4a9530f61656e806"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a7fd44450246a6feb4a9530f61656e806">fourier::b_dv</a> = 2</td></tr>
-<tr class="memdesc:a7fd44450246a6feb4a9530f61656e806"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">f_dv</a> flag. <br /></td></tr>
-<tr class="separator:a7fd44450246a6feb4a9530f61656e806"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="memItemLeft" align="right" valign="top"><a id="a9e9ca0e5c35ee8c667fa98817c2f48f8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a9e9ca0e5c35ee8c667fa98817c2f48f8">fourier::b_sum</a> = 3</td></tr>
-<tr class="memdesc:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#a35531eaf8acef68309d9ac9470dda0bc">f_sum</a> flag. <br /></td></tr>
-<tr class="separator:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a316da76b114c9060804aff5499b981a5"><td class="memItemLeft" align="right" valign="top"><a id="a316da76b114c9060804aff5499b981a5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a316da76b114c9060804aff5499b981a5">fourier::b_jac</a> = 4</td></tr>
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-: <a class="el" href="structsiesta__context_1_1siesta__context__class.html#af65c55288cc3dc507d19715a13973a47">siesta_context::siesta_context_class</a>
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-, <a class="el" href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">vmec_quantities</a>
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diff --git a/html/functions_c.html b/html/functions_c.html
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-<title>Stellarator-Tools: Class Members</title>
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
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-   <div id="projectname">Stellarator-Tools
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-
-<h3><a id="index_c"></a>- c -</h3><ul>
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-: <a class="el" href="classvector3d.html#a9a6ae4bece405d27680479007f4d179d">vector3d</a>
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-: <a class="el" href="interfaceutilities_1_1curl__htof.html#a30b3ca73eb64f3c07b6c13074f82993e">utilities::curl_htof</a>
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-: <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html#aa90ebaa11c2b645208fe1f5cf0b5b77f">magnetic_response::magnetic_response_class</a>
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-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a546b0abdb96cd9dc930edd3a6d5cec38">reconstruction::reconstruction_class</a>
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-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a497d649594d1e956ca874d131abcf3dd">reconstruction::reconstruction_class</a>
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-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a9a2311c2625abf6e391aa30c012f8cb6">reconstruction::reconstruction_class</a>
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diff --git a/html/functions_d.html b/html/functions_d.html
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
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-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
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-<h3><a id="index_d"></a>- d -</h3><ul>
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-: <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html#a296a1873e7fc760754f856c9890983ae">v3rfun_context::v3rfun_context_class</a>
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-, <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html#a2e76ba9d607518b9f7df3056f84330bf">magnetic_response::magnetic_response_class</a>
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-: <a class="el" href="classvertex.html#aae36ee47387da49f3e9ff97dac66aa83">vertex</a>
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-<title>Stellarator-Tools: Class Members</title>
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-<table cellspacing="0" cellpadding="0">
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-   <div id="projectname">Stellarator-Tools
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-, <a class="el" href="classvmec__quantities.html#ae6052d6b3274f89b93454376568747c3">vmec_quantities</a>
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-, <a class="el" href="classvmec__quantities.html#acd9866149633d9d9abc3c38cd5d74978">vmec_quantities</a>
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-: <a class="el" href="structv3fit__params_1_1param__recon__class.html#a3426102cdc2791aa5bf82e29d9c3f056">v3fit_params::param_recon_class</a>
-</li>
-<li>set_bndy_fouier_m0()
-: <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#a4d1d70cf3dc699a6e20d8fd24f224687">utilities::set_bndy_fouier_m0</a>
-</li>
-<li>set_bndy_fouier_m0_vec()
-: <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">utilities::set_bndy_fouier_m0</a>
-</li>
-<li>siesta_construct()
-: <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#a7900cb5480d226474d0bde934d0775b7">siesta_equilibrium::siesta_class</a>
-</li>
-<li>siesta_file_construct()
-: <a class="el" href="structsiesta__file_1_1siesta__file__class.html#ac268ff45776182c986cad6231dd2871f">siesta_file::siesta_file_class</a>
-</li>
-<li>siesta_file_name
-: <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#ae19c1b20b25402d8bc6ccee2a71cc487">siesta_equilibrium::siesta_class</a>
-</li>
-<li>siesta_fourier()
-: <a class="el" href="classsiesta__fourier.html#a4213dc879264ab82aa9a8c80f0e4f877">siesta_fourier&lt; GRID_CLASS, PARITY &gt;</a>
-</li>
-<li>siesta_grid()
-: <a class="el" href="classsiesta__grid.html#a5d795e69f829d45e4fb10d445c4e4945">siesta_grid&lt; GRID_CLASS &gt;</a>
-</li>
-<li>siesta_quantities()
-: <a class="el" href="classsiesta__quantities.html#a38fbfd9b3872ff213cdf8ec6a430b180">siesta_quantities</a>
-</li>
-<li>siesta_run_construct()
-: <a class="el" href="structsiesta__run_1_1siesta__run__class.html#a81af6a398e7e503b2dda2c6bb798c6a4">siesta_run::siesta_run_class</a>
-</li>
-<li>sigma
-: <a class="el" href="structv3fit__params_1_1param__class.html#ae37c690d1971fae91ce73570a2aa4a32">v3fit_params::param_class</a>
-</li>
-<li>signal
-: <a class="el" href="structintpol_1_1intpol__gp__int__context__s.html#adb480d98d3c4976174bb0e6aa319d667">intpol::intpol_gp_int_context_s</a>
-, <a class="el" href="structintpol_1_1intpol__gp__pol__context__s.html#ae9c01f40653a763a0aaa1c976225b22f">intpol::intpol_gp_pol_context_s</a>
-, <a class="el" href="structsxrem_1_1sxrem__gp__context__s.html#a345050fb0d7392450a46dcffe39683ed">sxrem::sxrem_gp_context_s</a>
-</li>
-<li>signal_construct_diagnostic_netcdf()
-: <a class="el" href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">signal::signal_construct</a>
-</li>
-<li>signal_construct_new()
-: <a class="el" href="interfacesignal_1_1signal__construct.html#a273530affe49200dfa2ea120360189ee">signal::signal_construct</a>
-</li>
-<li>signal_factor
-: <a class="el" href="structmodel_1_1model__class.html#acb04711e18d5ad032c0f3dc18dd22352">model::model_class</a>
-</li>
-<li>signal_id
-: <a class="el" href="structsignal__dot_1_1signal__dot__file.html#a26fb92866ff7cc15f247779e7658ef91">signal_dot::signal_dot_file</a>
-</li>
-<li>signal_offset
-: <a class="el" href="structmodel_1_1model__class.html#a5dd292c5d8307c795fb9509eb9b3d4a2">model::model_class</a>
-</li>
-<li>signals
-: <a class="el" href="structcombination_1_1combination__class.html#ab62cd985db2fa5b020c9d45052a8294d">combination::combination_class</a>
-, <a class="el" href="structguassian__process_1_1gaussp__class.html#a46475eab59a1ddb4a728c12c28e1408f">guassian_process::gaussp_class</a>
-, <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a40c8a67405aa0f88675d619ea0c763ed">v3fit_context::v3fit_context_class</a>
-</li>
-<li>signj
-: <a class="el" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">vmec_quantities</a>
-</li>
-<li>sinmu
-: <a class="el" href="structfourier_1_1fourier__class.html#a149797c8d34416ee2b2b382df812d110">fourier::fourier_class</a>
-</li>
-<li>sinmui
-: <a class="el" href="structfourier_1_1fourier__class.html#a6baec980b314584c0d793e2b8774b3d3">fourier::fourier_class</a>
-</li>
-<li>sinmum
-: <a class="el" href="structfourier_1_1fourier__class.html#a995dc18209a8f0f791c4d38db4da63c7">fourier::fourier_class</a>
-</li>
-<li>sinnv
-: <a class="el" href="structfourier_1_1fourier__class.html#a60f2dc868cd36fc83d4a95c393cbce4c">fourier::fourier_class</a>
-</li>
-<li>sinnvn
-: <a class="el" href="structfourier_1_1fourier__class.html#ab08ec88d0af19f7c01fb61e1e5cdc3e9">fourier::fourier_class</a>
-</li>
-<li>state_flags
-: <a class="el" href="structmodel_1_1model__class.html#a3385fb1d7d2f4ead045e7f46fc34ec78">model::model_class</a>
-</li>
-<li>step_max
-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a0ad3027403a902a95641d57854e6b51b">reconstruction::reconstruction_class</a>
-</li>
-<li>step_size
-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#ab1e7367879be16c8963d2095f1fed4ee">reconstruction::reconstruction_class</a>
-</li>
-<li>step_type
-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a6d73eec98472b7860a8d609984c19a1b">reconstruction::reconstruction_class</a>
-</li>
-<li>stride
-: <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a90ecfff59b58e6e5ab6d1bf64244b042">bmw_parallel_context::bmw_parallel_context_class</a>
-</li>
-<li>surface_commandline_parser_construct()
-: <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html#ab7ab938e41f4b5edae2228b010b35fad">surface_commandline_parser::surface_commandline_parser_class</a>
-</li>
-<li>surface_context_construct()
-: <a class="el" href="structsurface__context_1_1surface__context__class.html#a14e4097137e4f4a62cc69dc73be2040a">surface_context::surface_context_class</a>
-</li>
-<li>svd_w
-: <a class="el" href="structreconstruction_1_1reconstruction__class.html#a9d0cce839189470ae7372bfe5f5c3988">reconstruction::reconstruction_class</a>
-</li>
-<li>sxrem
-: <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34">vmec_equilibrium::vmec_class</a>
-</li>
-<li>sxrem_emiss_construct()
-: <a class="el" href="structsxrem_1_1sxrem__emiss__class.html#a5594912991299c7e8fab6bb41c47d430">sxrem::sxrem_emiss_class</a>
-</li>
-<li>sxrem_grid
-: <a class="el" href="structmodel_1_1model__class.html#a2ef64f2a8cc0059e1539ce915434d50d">model::model_class</a>
-</li>
-<li>sxrem_index
-: <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a9e996f0ee5e147675ba598f4bffa33e0">v3fit_context::v3fit_context_class</a>
-</li>
-<li>sxrem_min
-: <a class="el" href="structmodel_1_1model__class.html#a9aaf6f3e9f5dff9cebfc9825807a5fd7">model::model_class</a>
-</li>
-<li>sxrem_ratio
-: <a class="el" href="structmodel_1_1model__class.html#aa29900fdaf8d7ad9d38d32bdaaeb7d65">model::model_class</a>
-</li>
-<li>sxrem_ratio_construct()
-: <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html#a195c810d01b162685ccefecb25242faf">sxrem_ratio::sxrem_ratio_class</a>
-</li>
-<li>sxrem_ratio_index
-: <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#af9b33937ac8b4429ebc47fdfce1d56ba">v3fit_context::v3fit_context_class</a>
-</li>
-<li>sxrem_te
-: <a class="el" href="structmodel_1_1model__class.html#aec57107b5d2552bf99fe3a10989c880b">model::model_class</a>
-</li>
-<li>sxrem_ti_construct()
-: <a class="el" href="structsxrem_1_1sxrem__ti__class.html#a0c9e91635adc729c9cd1d53083d1f239">sxrem::sxrem_ti_class</a>
-</li>
-<li>sxrem_type
-: <a class="el" href="structmodel_1_1model__class.html#ab51bbd264336563e4acece72fb009430">model::model_class</a>
-</li>
-<li>symbol_name
-: <a class="el" href="structprofiler_1_1profiler__bucket.html#ae2816462bc0ec94cfba884b60af21f3e">profiler::profiler_bucket</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/functions_t.html b/html/functions_t.html
deleted file mode 100644
index 6bf7ec8..0000000
--- a/html/functions_t.html
+++ /dev/null
@@ -1,164 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Class Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
-</head>
-<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */</script>
-<div id="main-nav"></div>
-</div><!-- top -->
-<!-- window showing the filter options -->
-<div id="MSearchSelectWindow"
-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
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-
-<!-- iframe showing the search results (closed by default) -->
-<div id="MSearchResultsWindow">
-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented class members with links to the class documentation for each member:</div>
-
-<h3><a id="index_t"></a>- t -</h3><ul>
-<li>t2
-: <a class="el" href="structblocktridiagonalsolver_1_1timecount.html#a3543ff5f48ece66ce21b95b7db617044">blocktridiagonalsolver::timecount</a>
-, <a class="el" href="structblocktridiagonalsolver__bst_1_1timecount.html#a86085e83044a5543608188e4ca2037a8">blocktridiagonalsolver_bst::timecount</a>
-</li>
-<li>te
-: <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0dfd08d4f237fae503c7b27513cfee02">vmec_equilibrium::vmec_class</a>
-</li>
-<li>te_grid
-: <a class="el" href="structmodel_1_1model__class.html#a9aeefdd06df09cf6343f105c02e13556">model::model_class</a>
-</li>
-<li>te_min
-: <a class="el" href="structmodel_1_1model__class.html#ae4e71bd5e8b60924c3c289b7dcbd3410">model::model_class</a>
-</li>
-<li>te_start
-: <a class="el" href="structemission_1_1emission__class.html#a8c9e94a46561f055181fe240ba242f4a">emission::emission_class</a>
-</li>
-<li>te_step
-: <a class="el" href="structemission_1_1emission__class.html#aad3b87d7c9017ca5fe4316c9c4eb936e">emission::emission_class</a>
-</li>
-<li>te_type
-: <a class="el" href="structmodel_1_1model__class.html#a643ab844758277b242ebde4524cbf2a6">model::model_class</a>
-</li>
-<li>test_full
-: <a class="el" href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">siesta_quantities</a>
-, <a class="el" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">vmec_quantities</a>
-</li>
-<li>theta
-: <a class="el" href="structextcurz_1_1extcurz__class.html#ae64f8fc21e6457a62700d2d42930bb62">extcurz::extcurz_class</a>
-, <a class="el" href="structmse_1_1mse__class.html#a7e5b235a1ce8742944cd7c8576c098b8">mse::mse_class</a>
-</li>
-<li>thomson_index
-: <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a1d7c297ed85c504710411982dd9986b7">v3fit_context::v3fit_context_class</a>
-</li>
-<li>thomson_ne_construct()
-: <a class="el" href="structthomson_1_1thomson__ne__class.html#a432325b8d88db4b88f2a7398da9ba3e4">thomson::thomson_ne_class</a>
-</li>
-<li>thomson_p_construct()
-: <a class="el" href="structthomson_1_1thomson__p__class.html#a57e71f7419a08c35c854bed968077622">thomson::thomson_p_class</a>
-</li>
-<li>thomson_te_construct()
-: <a class="el" href="structthomson_1_1thomson__te__class.html#a34151fdabc94fa8abaf5f581a6dd99c8">thomson::thomson_te_class</a>
-</li>
-<li>ti
-: <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a82d2d9bfc3da51b9af56dec9d6019eac">vmec_equilibrium::vmec_class</a>
-</li>
-<li>ti_grid
-: <a class="el" href="structmodel_1_1model__class.html#a8c40878b64246666ce472b688e7b634c">model::model_class</a>
-</li>
-<li>ti_min
-: <a class="el" href="structmodel_1_1model__class.html#a3294ff9c4caa1a6a0cc536c5fd0ea63e">model::model_class</a>
-</li>
-<li>ti_type
-: <a class="el" href="structmodel_1_1model__class.html#a1cf45a341529b781b9c73288e3c71960">model::model_class</a>
-</li>
-<li>time_on
-: <a class="el" href="structsiesta__run_1_1siesta__run__class.html#aebcb77698125edcb8097900b602a3189">siesta_run::siesta_run_class</a>
-</li>
-<li>to_full_mesh2()
-: <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">utilities::to_full_mesh</a>
-</li>
-<li>to_full_mesh3()
-: <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">utilities::to_full_mesh</a>
-</li>
-<li>to_half_mesh()
-: <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a9044f569c96f2a3006c1c8bf12386536">utilities::to_half_mesh</a>
-</li>
-<li>to_half_mesh_p()
-: <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a17173a22873cc4031419a3f79fcb5abe">utilities::to_half_mesh</a>
-</li>
-<li>to_prime()
-: <a class="el" href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">siesta_quantities</a>
-, <a class="el" href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">vmec_quantities</a>
-</li>
-<li>tolerance
-: <a class="el" href="structguassian__process_1_1gaussp__class.html#abbc1968221ec576c536a062a48f910f1">guassian_process::gaussp_class</a>
-</li>
-<li>tor_modes
-: <a class="el" href="structfourier_1_1fourier__class.html#a0323b3b4876c3ea2f39ab1a9f87a54e7">fourier::fourier_class</a>
-, <a class="el" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">siesta_fourier&lt; GRID_CLASS, PARITY &gt;</a>
-</li>
-<li>total_time
-: <a class="el" href="structprofiler_1_1profiler__bucket.html#a9a4179653921753eb11485425a8530d8">profiler::profiler_bucket</a>
-</li>
-<li>transmission
-: <a class="el" href="structmodel_1_1model__class.html#a07fa53cfc4cb26a502cef635a5c90bdf">model::model_class</a>
-</li>
-<li>type
-: <a class="el" href="structcombination_1_1combination__class.html#a3d06bbf672a8f873d79414161aa4e0b1">combination::combination_class</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/functions_u.html b/html/functions_u.html
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-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Class Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
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-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
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-template&lt;class GRID_CLASS &gt; </td></tr>
-<tr class="memitem:a1d46cf832974f65f1c17d70d5794352d"><td class="memTemplItemLeft" align="right" valign="top">using&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="grid__quantity_8hpp.html#a1d46cf832974f65f1c17d70d5794352d">vmec_quantity</a> = std::vector&lt; <a class="el" href="classvmec__grid.html">vmec_grid</a>&lt; GRID_CLASS &gt; &gt;</td></tr>
-<tr class="memdesc:a1d46cf832974f65f1c17d70d5794352d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type for vmec fourier quantities. <br /></td></tr>
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-template&lt;class GRID_CLASS &gt; </td></tr>
-<tr class="memitem:a6f57755e702c1b65b151b4bf155c4d87"><td class="memTemplItemLeft" align="right" valign="top">using&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d</a> = std::vector&lt; <a class="el" href="classsiesta__grid.html">siesta_grid</a>&lt; GRID_CLASS &gt; &gt;</td></tr>
-<tr class="memdesc:a6f57755e702c1b65b151b4bf155c4d87"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type for siesta fourier quantities for a single dimension. <br /></td></tr>
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-template&lt;class GRID_CLASS &gt; </td></tr>
-<tr class="memitem:ac60ced47d44d94ae603f98afabdde266"><td class="memTemplItemLeft" align="right" valign="top">using&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity</a> = std::vector&lt; <a class="el" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d</a>&lt; GRID_CLASS &gt; &gt;</td></tr>
-<tr class="memdesc:ac60ced47d44d94ae603f98afabdde266"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type for siesta fourier quantities. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains classes to interpolate full and half grid quanities. </p>
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-<div class="title">grid_quantity.hpp</div>  </div>
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-<a href="grid__quantity_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment"></span><span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
-<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#ifndef grid_quantity_hpp</span></div>
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-<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160; </div>
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-<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160; </div>
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-<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160; </div>
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-<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160; </div>
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-<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00312"></a><span class="lineno"><a class="line" href="classsiesta__fourier.html#a4213dc879264ab82aa9a8c80f0e4f877">  312</a></span>&#160;    <a class="code" href="classsiesta__fourier.html#a4213dc879264ab82aa9a8c80f0e4f877">siesta_fourier</a>(<span class="keyword">const</span> <a class="code" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity&lt;GRID_CLASS&gt;</a> &amp;buffer,</div>
-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;                   <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code" href="classsiesta__fourier.html#a3a89de0bf13d8303a3e659ea38758b89">mpol</a>,</div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;                   <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>,</div>
-<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;                   <span class="keyword">const</span> std::vector&lt;int&gt; &amp;<a class="code" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">tor_modes</a>,</div>
-<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;                   <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code" href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">nfp</a>) :</div>
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-<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160; </div>
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-<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00329"></a><span class="lineno"><a class="line" href="classsiesta__fourier.html#a56fce8779f974e68f57b5b19476484c5">  329</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__fourier.html#a56fce8779f974e68f57b5b19476484c5">get</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s,</div>
-<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;               <span class="keyword">const</span> <span class="keywordtype">double</span> u,</div>
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-<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">long</span> n = -<a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>, en = <a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>; n &lt;= en; n++) {</div>
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-<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;                temp += <a class="code" href="classsiesta__fourier.html#aae4b2a04be06c89fa1352eb58063dcab">quantity</a>[m][ni].get(s)*<a class="code" href="classsiesta__fourier.html#a5a7d8c996c79053bed04affff1e8b9bf">func</a>.f(m*u + <a class="code" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">tor_modes</a>[ni]*(<a class="code" href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">nfp</a>*v));</div>
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-<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160; </div>
-<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;        <span class="keywordflow">return</span> temp;</div>
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-<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160; </div>
-<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00354"></a><span class="lineno"><a class="line" href="classsiesta__fourier.html#a5751b6fabd640aef95768fbedd79f4fa">  354</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__fourier.html#a5751b6fabd640aef95768fbedd79f4fa">get_du</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s,</div>
-<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;                  <span class="keyword">const</span> <span class="keywordtype">double</span> u,</div>
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-<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160; </div>
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-<div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">long</span> n = -<a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>, en = <a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>; n &lt;= en; n++) {</div>
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-<div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;                temp += m*<a class="code" href="classsiesta__fourier.html#aae4b2a04be06c89fa1352eb58063dcab">quantity</a>[m][ni].get(s)*<a class="code" href="classsiesta__fourier.html#a5a7d8c996c79053bed04affff1e8b9bf">func</a>.df(m*u + <a class="code" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">tor_modes</a>[ni]*(<a class="code" href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">nfp</a>*v));</div>
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-<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160; </div>
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-<div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00379"></a><span class="lineno"><a class="line" href="classsiesta__fourier.html#a6832e09cc3673072b02ef2413689cfc8">  379</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__fourier.html#a6832e09cc3673072b02ef2413689cfc8">get_dv</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s,</div>
-<div class="line"><a name="l00380"></a><span class="lineno">  380</span>&#160;                  <span class="keyword">const</span> <span class="keywordtype">double</span> u,</div>
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-<div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160; </div>
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-<div class="line"><a name="l00385"></a><span class="lineno">  385</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">long</span> n = -<a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>, en = <a class="code" href="classsiesta__fourier.html#a58759e3ab3e7ebe405efb3a1996a56ea">ntor</a>; n &lt;= en; n++) {</div>
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-<div class="line"><a name="l00387"></a><span class="lineno">  387</span>&#160;                temp += <a class="code" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">tor_modes</a>[ni]*(<a class="code" href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">nfp</a>*<a class="code" href="classsiesta__fourier.html#aae4b2a04be06c89fa1352eb58063dcab">quantity</a>[m][ni].get(s))*<a class="code" href="classsiesta__fourier.html#a5a7d8c996c79053bed04affff1e8b9bf">func</a>.df(m*u + <a class="code" href="classsiesta__fourier.html#ab67ad0d1ebacc612d1c8e31c37d742d9">tor_modes</a>[ni]*(<a class="code" href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">nfp</a>*v));</div>
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-<div class="ttc" id="aclassfull__grid_html_a4123df1c309c0e0e9d9e2c3fbf6c1e29"><div class="ttname"><a href="classfull__grid.html#a4123df1c309c0e0e9d9e2c3fbf6c1e29">full_grid::get_prime</a></div><div class="ttdeci">half_grid get_prime() const</div><div class="ttdoc">Get a radial derivative at a s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:59</div></div>
-<div class="ttc" id="aclassfull__grid_html_a4d17bf5e9e56a6fa7357e9a217a8958d"><div class="ttname"><a href="classfull__grid.html#a4d17bf5e9e56a6fa7357e9a217a8958d">full_grid::full_grid</a></div><div class="ttdeci">full_grid(const std::vector&lt; double &gt; &amp;buffer)</div><div class="ttdoc">Construct a full grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:27</div></div>
-<div class="ttc" id="aclassfull__grid_html_aa3d55664d8058c6e15088050d260c28e"><div class="ttname"><a href="classfull__grid.html#aa3d55664d8058c6e15088050d260c28e">full_grid::get</a></div><div class="ttdeci">double get(const double s) const final</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:36</div></div>
-<div class="ttc" id="aclasshalf__grid_html"><div class="ttname"><a href="classhalf__grid.html">half_grid</a></div><div class="ttdoc">A half grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:80</div></div>
-<div class="ttc" id="aclasshalf__grid_html_a43041375f30e58d82a14a28574048efa"><div class="ttname"><a href="classhalf__grid.html#a43041375f30e58d82a14a28574048efa">half_grid::get_prime</a></div><div class="ttdeci">full_grid get_prime(const double m) const</div><div class="ttdoc">Get a radial derivative at a s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:111</div></div>
-<div class="ttc" id="aclasshalf__grid_html_a6e54cf5298b6363392039dac3831cf8c"><div class="ttname"><a href="classhalf__grid.html#a6e54cf5298b6363392039dac3831cf8c">half_grid::get</a></div><div class="ttdeci">double get(const double s) const final</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:86</div></div>
-<div class="ttc" id="aclasshalf__grid_html_a7a71370a594829626525744940a10d76"><div class="ttname"><a href="classhalf__grid.html#a7a71370a594829626525744940a10d76">half_grid::half_grid</a></div><div class="ttdeci">half_grid(const std::vector&lt; double &gt; &amp;buffer)</div><div class="ttdoc">Construct a half grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:77</div></div>
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-<div class="ttc" id="aclassradial__quantity_html_a23494e65793a9240e6028c41fbf65eb9"><div class="ttname"><a href="classradial__quantity.html#a23494e65793a9240e6028c41fbf65eb9">radial_quantity::ds</a></div><div class="ttdeci">const double ds</div><div class="ttdoc">Grid spacing in s.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:23</div></div>
-<div class="ttc" id="aclassradial__quantity_html_a5978667b06806432f749db6b0543badf"><div class="ttname"><a href="classradial__quantity.html#a5978667b06806432f749db6b0543badf">radial_quantity::radial_quantity</a></div><div class="ttdeci">radial_quantity(const std::vector&lt; double &gt; &amp;buffer)</div><div class="ttdoc">Construct a radial quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:16</div></div>
-<div class="ttc" id="aclassradial__quantity_html_aabca68294eb0c2f7f256d9faf31ea31f"><div class="ttname"><a href="classradial__quantity.html#aabca68294eb0c2f7f256d9faf31ea31f">radial_quantity::get</a></div><div class="ttdeci">virtual double get(const double s) const =0</div><div class="ttdoc">vitual interface to get a value at a radial s position.</div></div>
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-<div class="ttc" id="aclasssiesta__fourier_html"><div class="ttname"><a href="classsiesta__fourier.html">siesta_fourier</a></div><div class="ttdoc">A cosine parity vmec quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:288</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a13f94c8b0e3957717471d2a144efc77f"><div class="ttname"><a href="classsiesta__fourier.html#a13f94c8b0e3957717471d2a144efc77f">siesta_fourier::nfp</a></div><div class="ttdeci">const size_t nfp</div><div class="ttdoc">Number of field periods.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:297</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a3a89de0bf13d8303a3e659ea38758b89"><div class="ttname"><a href="classsiesta__fourier.html#a3a89de0bf13d8303a3e659ea38758b89">siesta_fourier::mpol</a></div><div class="ttdeci">const size_t mpol</div><div class="ttdoc">M modes.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:291</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a4213dc879264ab82aa9a8c80f0e4f877"><div class="ttname"><a href="classsiesta__fourier.html#a4213dc879264ab82aa9a8c80f0e4f877">siesta_fourier::siesta_fourier</a></div><div class="ttdeci">siesta_fourier(const siesta_quantity&lt; GRID_CLASS &gt; &amp;buffer, const size_t mpol, const size_t ntor, const std::vector&lt; int &gt; &amp;tor_modes, const size_t nfp)</div><div class="ttdoc">Siesta radial quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:312</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a56fce8779f974e68f57b5b19476484c5"><div class="ttname"><a href="classsiesta__fourier.html#a56fce8779f974e68f57b5b19476484c5">siesta_fourier::get</a></div><div class="ttdeci">double get(const double s, const double u, const double v) const</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:329</div></div>
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-<div class="ttc" id="aclasssiesta__fourier_html_a6832e09cc3673072b02ef2413689cfc8"><div class="ttname"><a href="classsiesta__fourier.html#a6832e09cc3673072b02ef2413689cfc8">siesta_fourier::get_dv</a></div><div class="ttdeci">double get_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get a toroidal derivative at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:379</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_aae4b2a04be06c89fa1352eb58063dcab"><div class="ttname"><a href="classsiesta__fourier.html#aae4b2a04be06c89fa1352eb58063dcab">siesta_fourier::quantity</a></div><div class="ttdeci">const siesta_quantity&lt; GRID_CLASS &gt; quantity</div><div class="ttdoc">Mode amplitudes.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:299</div></div>
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-<div class="ttc" id="aclasssiesta__grid_html"><div class="ttname"><a href="classsiesta__grid.html">siesta_grid</a></div><div class="ttdoc">A radial siesta quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:148</div></div>
-<div class="ttc" id="aclasssiesta__grid_html_a16344fde1af4f4869533d2201f2d5be5"><div class="ttname"><a href="classsiesta__grid.html#a16344fde1af4f4869533d2201f2d5be5">siesta_grid::grid</a></div><div class="ttdeci">const GRID_CLASS grid</div><div class="ttdoc">Radial grid buffer.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:151</div></div>
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-<div class="ttc" id="aclasssiesta__grid_html_adfee6673ce8a7f3b4b76f47ce5664c8e"><div class="ttname"><a href="classsiesta__grid.html#adfee6673ce8a7f3b4b76f47ce5664c8e">siesta_grid::siesta_grid</a></div><div class="ttdeci">siesta_grid(const GRID_CLASS &amp;grid)</div><div class="ttdoc">Siesta radial quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:165</div></div>
-<div class="ttc" id="aclassvmec__fourier_html"><div class="ttname"><a href="classvmec__fourier.html">vmec_fourier</a></div><div class="ttdoc">A cosine parity vmec quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:188</div></div>
-<div class="ttc" id="aclassvmec__fourier_html_a431fb060093dad71f1ce7407adc63704"><div class="ttname"><a href="classvmec__fourier.html#a431fb060093dad71f1ce7407adc63704">vmec_fourier::func</a></div><div class="ttdeci">const PARITY func</div><div class="ttdoc">Parity function.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:197</div></div>
-<div class="ttc" id="aclassvmec__fourier_html_a73494cb7151916a527433fa0fd5e611d"><div class="ttname"><a href="classvmec__fourier.html#a73494cb7151916a527433fa0fd5e611d">vmec_fourier::m</a></div><div class="ttdeci">const std::vector&lt; double &gt; m</div><div class="ttdoc">M modes.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:191</div></div>
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-<div class="ttc" id="aclassvmec__grid_html_a19befcdc8986f9b31895463b945fbdd1"><div class="ttname"><a href="classvmec__grid.html#a19befcdc8986f9b31895463b945fbdd1">vmec_grid::grid</a></div><div class="ttdeci">const GRID_CLASS grid</div><div class="ttdoc">Radial grid buffer.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:115</div></div>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">guassian_process::gaussp_class_pointer</a></td></tr>
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-<tr class="memitem:a0524a61b6dddfa5046800c10d3f5d94d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#a0524a61b6dddfa5046800c10d3f5d94d">guassian_process::gaussp_destruct</a> (this)</td></tr>
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-<tr class="separator:ad950f65ab28e5de3b228b982eef4c8a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#ac4ec9a85cfdf6daf0f4f2d24f6dd374f">guassian_process::gaussp_set_profile</a> (this, a_model)</td></tr>
-<tr class="memdesc:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the object and coefficient for an index.  <a href="namespaceguassian__process.html#ac4ec9a85cfdf6daf0f4f2d24f6dd374f">More...</a><br /></td></tr>
-<tr class="separator:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9dab53aec7835ca01fa0c3d3f5accc54"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#a9dab53aec7835ca01fa0c3d3f5accc54">guassian_process::gaussp_get_evidence</a> (this, a_model)</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-<li><a class="el" href="namelist_sec.html">V3FIT namelist input file</a> User manual for the V3FIT namelist input file.</li>
-<li><a class="el" href="result_file_main.html">Result output file.</a> User manual for the result NetCDF file.</li>
-</ul>
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-<p>Certain diagnostics require input files to describe the diagnostic. Below are documentation for the various files needed to define diagnostics.</p><ul>
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-<li><a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a> User manual for the inteferometry/polarimetry diagnostic dot file.</li>
-<li><a class="el" href="thomson_dot_sec.html">Thomson Scattering Diagnostic Dot File</a> User manual for the Thomson scattering diagnostic dot file.</li>
-<li><a class="el" href="mse_dot_sec.html">Motional Stark Effect Diagnostic Dot File</a> User manual for the motional stark effect diagnostic dot file.</li>
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-<li><a class="el" href="v3rfun_cl_parsing_sec.html">V3RFUN Command Line Arguments</a> User manual for the V3RFUN command line arguments.</li>
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-<p>Limiter grids require a preprocessing code LGRID to generate the input discription file.</p><ul>
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-<tr class="separator:a4ca8b7adf42fc4501643a52cffc900fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a05378176ed62eebf5da06dbde4bc5c3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1a576a43d6cd126be6b55984c5839c1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a18a315d704f2d54a181edd6d3580eaa6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3456f715eb7b6ddb91158b839e7f0bec"><td class="memItemLeft" align="right" valign="top">recursive subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintegration__path.html#a3456f715eb7b6ddb91158b839e7f0bec">integration_path::path_append_vertex</a> (this, position)</td></tr>
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-<tr class="separator:a3456f715eb7b6ddb91158b839e7f0bec"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a11358c40f231f1195a0dbca2e97a23a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae9c3a8440b62efb75cf299a26555651e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a0116e5343b00d2f0d9e97296f5842941"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line integrate between to points.  <a href="namespaceintegration__path.html#a0116e5343b00d2f0d9e97296f5842941">More...</a><br /></td></tr>
-<tr class="separator:a0116e5343b00d2f0d9e97296f5842941"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a763cdfae07b65b17f884176c5dd1aca1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line integrate between to points.  <a href="namespaceintegration__path.html#a763cdfae07b65b17f884176c5dd1aca1">More...</a><br /></td></tr>
-<tr class="separator:a763cdfae07b65b17f884176c5dd1aca1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintegration__path.html#a0a8b8a82b5d3ad4e906b99f2cee20e41">integration_path::integration_path_hp_gleg_integrate_path</a> (this, context, vertex1, vertex2)</td></tr>
-<tr class="memdesc:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line integrate between to points.  <a href="namespaceintegration__path.html#a0a8b8a82b5d3ad4e906b99f2cee20e41">More...</a><br /></td></tr>
-<tr class="separator:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a74fc9aeb6e4fe6fa26386076183db8bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">@breif Calculate the weights and abscissas for Gauss-Legendre integration.  <a href="namespaceintegration__path.html#a74fc9aeb6e4fe6fa26386076183db8bc">More...</a><br /></td></tr>
-<tr class="separator:a74fc9aeb6e4fe6fa26386076183db8bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ac27cbd9f98748d9ca49a3c839d7bd5ad"><td class="mdescLeft">&#160;</td><td class="mdescRight">Path unit test function.  <a href="namespaceintegration__path.html#ac27cbd9f98748d9ca49a3c839d7bd5ad">More...</a><br /></td></tr>
-<tr class="separator:ac27cbd9f98748d9ca49a3c839d7bd5ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:abdecb3a86227ac22524b234161ee4d86"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a9dfc45b722b2dd721baa766474005c98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default step size of the integration. <br /></td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceintegration__path.html">integration_path</a>. </p>
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-<!-- start footer part -->
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-<p>Contains module <a class="el" href="namespaceintegration__path__context.html">integration_path_context</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structintegration__path__context_1_1search__path__context__class.html">integration_path_context::search_path_context_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path__context_1_1integration__function.html">integration_path_context::integration_function</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path__context_1_1search__function.html">integration_path_context::search_function</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bsc_construct_coilcoll</b>(this, s_name, l_name, ncoil_init) (defined in <a class="el" href="interfacebsc__t_1_1bsc__construct.html">bsc_t::bsc_construct</a>)</td><td class="entry"><a class="el" href="interfacebsc__t_1_1bsc__construct.html">bsc_t::bsc_construct</a></td><td class="entry"></td></tr>
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-<p>Interface for the construction of <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> types using equilibrium_construct_vmec, equilibrium_construct_vacuum or equilibrium_construct_siesta.  
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_0i</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_0l</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_1c</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_1c16</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_1c8</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_1d</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_1f</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_1i</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_1l</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_2c</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_2c8</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_2d</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_2f</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_2i</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_3c16</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_3c8</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_3d</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_3f</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfd_3i</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>cdfd_3l</b>(ncid, varnam, varval, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfdefvar</b>(ncid, varnam, dimlens, xtype, ier, dimname) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html">ezcdf_genput::cdf_define</a></td><td class="entry"></td></tr>
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-<a href="#pub-methods">Public Member Functions</a> &#124;
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cdfw_3c16</b>(ncid, varnam, varval, ier) (defined in <a class="el" href="interfaceezcdf__genput_1_1cdf__write.html">ezcdf_genput::cdf_write</a>)</td><td class="entry"><a class="el" href="interfaceezcdf__genput_1_1cdf__write.html">ezcdf_genput::cdf_write</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative1_array_r8</b>(spline_o, i1, k1, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_derivative1_r4</b>(spline_o, i1, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative1_r8</b>(spline_o, i1, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_derivative2_cloud_r4</b>(spline_o, i1, i2, k, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative2_cloud_r8</b>(spline_o, i1, i2, k, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_derivative2_r4</b>(spline_o, i1, i2, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative2_r8</b>(spline_o, i1, i2, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_derivative3_array_r4</b>(spline_o, i1, i2, i3, k1, k2, k3, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative3_array_r8</b>(spline_o, i1, i2, i3, k1, k2, k3, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_derivative3_cloud_r4</b>(spline_o, i1, i2, i3, k, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_derivative3_cloud_r8</b>(spline_o, i1, i2, i3, k, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__derivative.html">ezspline::ezspline_derivative</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_gradient2_cloud_r4</b>(spline_o, k, p1, p2, df, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__gradient.html">ezspline::ezspline_gradient</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__gradient.html">ezspline::ezspline_gradient</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp1_array_r8</b>(spline_o, k1, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_interp1_r4</b>(spline_o, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp1_r8</b>(spline_o, p1, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp2_array_r8</b>(spline_o, k1, k2, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_interp2_cloud_r4</b>(spline_o, k, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp2_cloud_r8</b>(spline_o, k, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_interp2_r4</b>(spline_o, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp2_r8</b>(spline_o, p1, p2, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_interp3_array_r8</b>(spline_o, k1, k2, k3, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_interp3_cloud_r4</b>(spline_o, k, p1, p2, p3, f, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__interp.html">ezspline::ezspline_interp</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_isindomain1_r4</b>(spline_o, p1, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_isindomain2_array_r8</b>(spline_o, k1, k2, p1, p2, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_isindomain2_cloud_r8</b>(spline_o, k, p1, p2, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_isindomain3_cloud_r4</b>(spline_o, k, p1, p2, p3, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__isindomain.html">ezspline::ezspline_isindomain</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_modulo_array1_r4</b>(spline_o, k1, p1, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ezspline_modulo_cloud2_r4</b>(spline_o, k, p1, p2, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ezspline_modulo_cloud2_r8</b>(spline_o, k, p1, p2, ier) (defined in <a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a>)</td><td class="entry"><a class="el" href="interfaceezspline_1_1ezspline__modulo.html">ezspline::ezspline_modulo</a></td><td class="entry"></td></tr>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">m</td><td>Poloidal mode to check. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>Toroidal mode to check. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the test. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>SIESTA/Sources/<a class="el" href="fourier_8f90.html">fourier.f90</a></li>
-</ul>
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-<div class="title">integration_path::check Interface Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Interface for checking the results of the unit tests.  
- <a href="interfaceintegration__path_1_1check.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a8614af2194990fc83b852b1e7b9cb13c"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path_1_1check.html#a8614af2194990fc83b852b1e7b9cb13c">check_log</a> (expected, received, testNum, name)</td></tr>
-<tr class="memdesc:a8614af2194990fc83b852b1e7b9cb13c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check a logical value.  <a href="interfaceintegration__path_1_1check.html#a8614af2194990fc83b852b1e7b9cb13c">More...</a><br /></td></tr>
-<tr class="separator:a8614af2194990fc83b852b1e7b9cb13c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f08df4b2a994b3588e63af14d948d55"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path_1_1check.html#a2f08df4b2a994b3588e63af14d948d55">check_real</a> (expected, received, testNum, name)</td></tr>
-<tr class="memdesc:a2f08df4b2a994b3588e63af14d948d55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check a real value.  <a href="interfaceintegration__path_1_1check.html#a2f08df4b2a994b3588e63af14d948d55">More...</a><br /></td></tr>
-<tr class="separator:a2f08df4b2a994b3588e63af14d948d55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28399e5d62c4d80adc58f10ed95cbd58"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path_1_1check.html#a28399e5d62c4d80adc58f10ed95cbd58">check_int</a> (expected, received, testNum, name)</td></tr>
-<tr class="memdesc:a28399e5d62c4d80adc58f10ed95cbd58"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check an integer value.  <a href="interfaceintegration__path_1_1check.html#a28399e5d62c4d80adc58f10ed95cbd58">More...</a><br /></td></tr>
-<tr class="separator:a28399e5d62c4d80adc58f10ed95cbd58"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface for checking the results of the unit tests. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a28399e5d62c4d80adc58f10ed95cbd58"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a28399e5d62c4d80adc58f10ed95cbd58">&#9670;&nbsp;</a></span>check_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function integration_path::check::check_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>expected</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>received</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>testNum</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>name</em>&#160;</td>
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-
-<p>Check an integer value. </p>
-<p>Checks that the expected value matches the recieved. Otherwise report an error.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">expected</td><td>The known value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">received</td><td>The known test value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">testNum</td><td>The number of the test. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>The name of the test. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>True if the check passes and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a8614af2194990fc83b852b1e7b9cb13c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8614af2194990fc83b852b1e7b9cb13c">&#9670;&nbsp;</a></span>check_log()</h2>
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-<div class="memitem">
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-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>expected</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>received</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>testNum</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
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-          <td>)</td>
-          <td></td><td></td>
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-<p>Check a logical value. </p>
-<p>Checks that the expected value matches the recieved. Otherwise report an error.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">expected</td><td>The known value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">received</td><td>The known test value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">testNum</td><td>The number of the test. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>The name of the test. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the check passes and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a2f08df4b2a994b3588e63af14d948d55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f08df4b2a994b3588e63af14d948d55">&#9670;&nbsp;</a></span>check_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function integration_path::check::check_real </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>expected</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>received</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>testNum</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Check a real value. </p>
-<p>Checks that the expected value matches the recieved. Otherwise report an error.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">expected</td><td>The known value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">received</td><td>The known test value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">testNum</td><td>The number of the test. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>The name of the test. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the check passes and false otherwise. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>LIBSTELL/Sources/Modules/<a class="el" href="integration__path_8f.html">integration_path.f</a></li>
-</ul>
-</div><!-- contents -->
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-</div>
-</div><!-- top -->
-<div class="header">
-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="interfaceintegration__path_1_1path__construct-members.html">List of all members</a>  </div>
-  <div class="headertitle">
-<div class="title">integration_path::path_construct Interface Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Construction interface using <a class="el" href="interfaceintegration__path_1_1path__construct.html#a673e3bfd4635bd56c99612487fb3f9ce">path_construct_vertex</a>.  
- <a href="interfaceintegration__path_1_1path__construct.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a673e3bfd4635bd56c99612487fb3f9ce"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path_1_1path__construct.html#a673e3bfd4635bd56c99612487fb3f9ce">path_construct_vertex</a> (position)</td></tr>
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-<tr class="separator:a673e3bfd4635bd56c99612487fb3f9ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Construction interface using <a class="el" href="interfaceintegration__path_1_1path__construct.html#a673e3bfd4635bd56c99612487fb3f9ce">path_construct_vertex</a>. </p>
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-<a id="a673e3bfd4635bd56c99612487fb3f9ce"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a673e3bfd4635bd56c99612487fb3f9ce">&#9670;&nbsp;</a></span>path_construct_vertex()</h2>
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-          <td class="memname">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>) function, pointer integration_path::path_construct::path_construct_vertex </td>
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="classvertex.html">vertex</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>LIBSTELL/Sources/Modules/<a class="el" href="integration__path_8f.html">integration_path.f</a></li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface for the construction of <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> types using <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acf69545ff550e45977cf604d3e12984d">magnetic_response_construct_new</a>, &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acbfe705d07dc8eadd2eeb86d884069cc">magnetic_response_construct_point</a> or &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#a6c35981b55bef81a77099b7678fec1eb">magnetic_response_construct_netcdf</a>. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a6c35981b55bef81a77099b7678fec1eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c35981b55bef81a77099b7678fec1eb">&#9670;&nbsp;</a></span>magnetic_response_construct_netcdf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct::magnetic_response_construct_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object from a mdsig file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mdsig_iou</td><td>An instance of a the netcdf id of the open mdsig file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svd_cut_off</td><td>Cutoff on singular values for data compression. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="acf69545ff550e45977cf604d3e12984d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acf69545ff550e45977cf604d3e12984d">&#9670;&nbsp;</a></span>magnetic_response_construct_new()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct::magnetic_response_construct_new </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>date</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coil_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>inductance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>current_scale</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_t</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_t_shell</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n_field_periods</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>stell_sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_f</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_f</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the code which computed the responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">date</td><td>Data and time the code was run. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coil_id</td><td>Idenifier of field-coils. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inductance</td><td>Array of diagnostic field-coil-group responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_scale</td><td>Array of external current scales. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_t</td><td>Number of phi planes per field period in plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_t_shell</td><td>Number of phi planes per field period in the conducting shell grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum R for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum R for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum z for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum z for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n_field_periods</td><td>Number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">stell_sym</td><td>Use stellarator symmetry. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_r</td><td>R component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_f</td><td>Phi component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_z</td><td>Z component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_r</td><td>R component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_f</td><td>Phi component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_z</td><td>Z component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svd_cut_off</td><td>Cutoff on singular values for data compression. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="acbfe705d07dc8eadd2eeb86d884069cc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acbfe705d07dc8eadd2eeb86d884069cc">&#9670;&nbsp;</a></span>magnetic_response_construct_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct::magnetic_response_construct_point </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>date</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coil_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3)&#160;</td>
-          <td class="paramname"><em>position</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3)&#160;</td>
-          <td class="paramname"><em>direction</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>vacuum</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>current_scale</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the code which computed the responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">date</td><td>Data and time the code was run. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coil_id</td><td>Idenifier of field-coils. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Position of the point measurement. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">direction</td><td>Direction of the point measurement. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vacuum</td><td>Array of diagnostic vacuum responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_scale</td><td>Array of external current scales. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>LIBSTELL/Sources/Modules/<a class="el" href="magnetic__response_8f.html">magnetic_response.f</a></li>
-</ul>
-</div><!-- contents -->
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-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="interfacenetcdf__inc_1_1nf__get__var__double-members.html">List of all members</a>  </div>
-  <div class="headertitle">
-<div class="title">netcdf_inc::nf_get_var_double Interface Reference</div>  </div>
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-<div class="contents">
-
-<p>Interface for reading double variables.  
- <a href="interfacenetcdf__inc_1_1nf__get__var__double.html#details">More...</a></p>
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-<tr class="separator:af140518d08ba1b2b2196df48eed7d060"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface for reading double variables. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a024e63bcc694b815f25664a5ded47c5e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a024e63bcc694b815f25664a5ded47c5e">&#9670;&nbsp;</a></span>nf_get_var_double()</h2>
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-      </table>
-</div><div class="memdoc">
-
-<p>Read a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a81e734ee449ec89ba29aaa1b00dfd516"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a81e734ee449ec89ba29aaa1b00dfd516">&#9670;&nbsp;</a></span>nf_get_var_1d_cpx_double()</h2>
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-<div class="memproto">
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-          <td class="memname">integer function netcdf_inc::nf_get_var_double::nf_get_var_1d_cpx_double </td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td class="paramtype">complex (real64), dimension(:), intent(out)&#160;</td>
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-</div><div class="memdoc">
-
-<p>Read a 64bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a2d647e018a0b321428aafef70efc85b9">&#9670;&nbsp;</a></span>nf_get_var_1d_double()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">integer function netcdf_inc::nf_get_var_double::nf_get_var_1d_double </td>
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-          <td class="paramname"><em>ncid</em>, </td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-        <tr>
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-      </table>
-</div><div class="memdoc">
-
-<p>Read a double valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
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-  </table>
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-</dl>
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-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#af140518d08ba1b2b2196df48eed7d060">&#9670;&nbsp;</a></span>nf_get_var_2d_cpx_double()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_double::nf_get_var_2d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
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-        <tr>
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-<p>Read a 64bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<div class="memproto">
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-          <td class="paramname"><em>ncid</em>, </td>
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-          <td class="paramname"><em>dvals</em>&#160;</td>
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-</div><div class="memdoc">
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-<p>Read a double valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<p>Interface for writing integer variables.  
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-<p>Interface for writing real variables. Note double 2D array used by complex real array values.  
- <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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-<tr class="memdesc:ad68b178017742480a19f938639b8da4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex value.  <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#ad68b178017742480a19f938639b8da4d">More...</a><br /></td></tr>
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-<tr class="memdesc:a932c81f5519ac35af31058a4993db501"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#a932c81f5519ac35af31058a4993db501">More...</a><br /></td></tr>
-<tr class="separator:a932c81f5519ac35af31058a4993db501"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a91cec81bc2276d4d5b38a70ad9584a02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a94e7e522408ef85b5bd3f199e73cad60"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__var__real.html#a94e7e522408ef85b5bd3f199e73cad60">nf_put_var_1d_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a94e7e522408ef85b5bd3f199e73cad60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued array.  <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#a94e7e522408ef85b5bd3f199e73cad60">More...</a><br /></td></tr>
-<tr class="separator:a94e7e522408ef85b5bd3f199e73cad60"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a21918c65163f72f1ec4ee30eab6c03e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ae19d0a0f2130828e4a7656e8af214756"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued 2D array.  <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#ae19d0a0f2130828e4a7656e8af214756">More...</a><br /></td></tr>
-<tr class="separator:ae19d0a0f2130828e4a7656e8af214756"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a4c065cb05483b8635507092395d66b8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a67d7139d1dc4ccfbf982ee6a00a6e10f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a9aa96d7d8d3227f4927ee98c4d92edc0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued 3D array.  <a href="interfacenetcdf__inc_1_1nf__put__var__real.html#a9aa96d7d8d3227f4927ee98c4d92edc0">More...</a><br /></td></tr>
-<tr class="separator:a9aa96d7d8d3227f4927ee98c4d92edc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface for writing real variables. Note double 2D array used by complex real array values. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a932c81f5519ac35af31058a4993db501"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a932c81f5519ac35af31058a4993db501">&#9670;&nbsp;</a></span>nf_put_var_real()</h2>
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-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_real::nf_put_var_real </td>
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-        <tr>
-          <td class="paramkey"></td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-        <tr>
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-          <td></td>
-          <td class="paramtype">real (real32), intent(in)&#160;</td>
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-        <tr>
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-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a94e7e522408ef85b5bd3f199e73cad60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a94e7e522408ef85b5bd3f199e73cad60">&#9670;&nbsp;</a></span>nf_put_var_1d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_real::nf_put_var_1d_cpx_real </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">complex (real32), dimension(:), intent(in)&#160;</td>
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-        <tr>
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-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a 32bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a91cec81bc2276d4d5b38a70ad9584a02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a91cec81bc2276d4d5b38a70ad9584a02">&#9670;&nbsp;</a></span>nf_put_var_1d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_real::nf_put_var_1d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
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-          <td></td>
-          <td class="paramtype">real (real32), dimension(:), intent(in)&#160;</td>
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-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Write a real valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae19d0a0f2130828e4a7656e8af214756"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae19d0a0f2130828e4a7656e8af214756">&#9670;&nbsp;</a></span>nf_put_var_2d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_real::nf_put_var_2d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
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-        <tr>
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-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Write a 32bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
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-</dl>
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-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a4c065cb05483b8635507092395d66b8d">&#9670;&nbsp;</a></span>nf_put_var_2d_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_real::nf_put_var_2d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
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-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a double valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
-  </table>
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-</dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a21918c65163f72f1ec4ee30eab6c03e6">&#9670;&nbsp;</a></span>nf_put_var_2d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td>(</td>
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-          <td class="paramname"><em>ncid</em>, </td>
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-          <td class="paramname"><em>rvals</em>&#160;</td>
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-        <tr>
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-      </table>
-</div><div class="memdoc">
-
-<p>Read a real valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
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-</dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a9aa96d7d8d3227f4927ee98c4d92edc0">&#9670;&nbsp;</a></span>nf_put_var_3d_cpx_real()</h2>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramkey"></td>
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-<p>Interface for writing integer variables.  
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-<tr class="separator:a5b689f495d841e4b8f5cb73b8f9bb463"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4fd7acad75c09d49d64ac50db69537a3"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__real.html#a4fd7acad75c09d49d64ac50db69537a3">nf_put_vara_2d_real</a> (ncid, varid, start, count, rvals)</td></tr>
-<tr class="memdesc:a4fd7acad75c09d49d64ac50db69537a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="interfacenetcdf__inc_1_1nf__put__vara__real.html#a4fd7acad75c09d49d64ac50db69537a3">More...</a><br /></td></tr>
-<tr class="separator:a4fd7acad75c09d49d64ac50db69537a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa6fd9c02f07496eff25bae7e000239a9"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__real.html#aa6fd9c02f07496eff25bae7e000239a9">nf_put_vara_3d_cpx_real</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:aa6fd9c02f07496eff25bae7e000239a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex real value.  <a href="interfacenetcdf__inc_1_1nf__put__vara__real.html#aa6fd9c02f07496eff25bae7e000239a9">More...</a><br /></td></tr>
-<tr class="separator:aa6fd9c02f07496eff25bae7e000239a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1fcf6c69680d3342174385456cfb20eb"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__real.html#a1fcf6c69680d3342174385456cfb20eb">nf_put_vara_3d_real</a> (ncid, varid, start, count, rvals)</td></tr>
-<tr class="memdesc:a1fcf6c69680d3342174385456cfb20eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="interfacenetcdf__inc_1_1nf__put__vara__real.html#a1fcf6c69680d3342174385456cfb20eb">More...</a><br /></td></tr>
-<tr class="separator:a1fcf6c69680d3342174385456cfb20eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
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-<h2 class="memtitle"><span class="permalink"><a href="#ad549d432d6deabb3512064d61a41ad59">&#9670;&nbsp;</a></span>nf_put_vara_real()</h2>
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-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
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-</div>
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-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
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-<h2 class="memtitle"><span class="permalink"><a href="#a5b689f495d841e4b8f5cb73b8f9bb463">&#9670;&nbsp;</a></span>nf_put_vara_2d_cpx_real()</h2>
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-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a4fd7acad75c09d49d64ac50db69537a3">&#9670;&nbsp;</a></span>nf_put_vara_2d_real()</h2>
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-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
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-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Real value to write. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a1fcf6c69680d3342174385456cfb20eb">&#9670;&nbsp;</a></span>nf_put_vara_3d_real()</h2>
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-          <td class="paramname"><em>ncid</em>, </td>
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-          <td class="paramname"><em>start</em>, </td>
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-
-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a687e65c9659fb4bbf11122e4f136f8fb">&#9670;&nbsp;</a></span>nf_put_vara_cpx_real()</h2>
-
-<div class="memitem">
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-          <td class="memname">integer function netcdf_inc::nf_put_vara_real::nf_put_vara_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
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-          <td class="paramkey"></td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:), intent(in)&#160;</td>
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-
-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
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-<p>Interface for the construction of <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> types using <a class="el" href="interfacesignal_1_1signal__construct.html#a273530affe49200dfa2ea120360189ee">signal_construct_new</a> or <a class="el" href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">signal_construct_diagnostic_netcdf</a>.  
- <a href="interfacesignal_1_1signal__construct.html#details">More...</a></p>
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-<tr class="memdesc:a273530affe49200dfa2ea120360189ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct new <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object.  <a href="interfacesignal_1_1signal__construct.html#a273530affe49200dfa2ea120360189ee">More...</a><br /></td></tr>
-<tr class="separator:a273530affe49200dfa2ea120360189ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b551ab7337b59cf88803d93ca26f2dc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">signal_construct_diagnostic_netcdf</a> (this, mdsig_iou, observed, sigma, weight, s_index, o_index)</td></tr>
-<tr class="memdesc:a5b551ab7337b59cf88803d93ca26f2dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> containing a diagnostic object.  <a href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">More...</a><br /></td></tr>
-<tr class="separator:a5b551ab7337b59cf88803d93ca26f2dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-          <td class="memname">subroutine signal::signal_construct::signal_construct_diagnostic_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>s_index</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
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-<p>Construct a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> containing a diagnostic object. </p>
-<p>Reads the s_name, l_name and units from a netcdf file. Used for constructing the <a class="el" href="namespacemagnetic.html">magnetic</a> objects.</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Observed sigma of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Weight factor of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_index</td><td>Index of the model signal scale factor. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">o_index</td><td>Index of the model signal offset factor. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>Apointer to a constructed <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object. </dd></dl>
-
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-<a id="a273530affe49200dfa2ea120360189ee"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a273530affe49200dfa2ea120360189ee">&#9670;&nbsp;</a></span>signal_construct_new()</h2>
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-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
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-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>l_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>units</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>s_index</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>o_index</em>&#160;</td>
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-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Construct new <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>An instance of a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a>. </td></tr>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">units</td><td>The units of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Observed value of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Observed sigma of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Weight factor of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_index</td><td>Index of the model signal scale factor. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">o_index</td><td>Index of the model signal offset factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="signal_8f.html">signal.f</a></li>
-</ul>
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-<tr class="memitem:a30b3ca73eb64f3c07b6c13074f82993e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1curl__htof.html#a30b3ca73eb64f3c07b6c13074f82993e">curl_htof</a> (bsubsmnh, bsubumnh, bsubvmnh,</td></tr>
-<tr class="memdesc:a30b3ca73eb64f3c07b6c13074f82993e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute curl of the half grid quantity a on the full grid.  <a href="interfaceutilities_1_1curl__htof.html#a30b3ca73eb64f3c07b6c13074f82993e">More...</a><br /></td></tr>
-<tr class="separator:a30b3ca73eb64f3c07b6c13074f82993e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a70004de9e4acdbf6dff1a0ead5d8bb54"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">curl_htof_targ</a> (bsubsmnh, bsubumnh, bsubvmnh,</td></tr>
-<tr class="memdesc:a70004de9e4acdbf6dff1a0ead5d8bb54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert allocatable to pointer for use in <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a>.  <a href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">More...</a><br /></td></tr>
-<tr class="separator:a70004de9e4acdbf6dff1a0ead5d8bb54"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface to take the curl on a half mesh quantity and return a full mesh using either <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a> or <a class="el" href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">curl_htof_targ</a>. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a30b3ca73eb64f3c07b6c13074f82993e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a30b3ca73eb64f3c07b6c13074f82993e">&#9670;&nbsp;</a></span>curl_htof()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::curl_htof::curl_htof </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute curl of the half grid quantity a on the full grid. </p>
-<p>The contravariant components of jac*Curl A are equal to</p>
-<p>sqrt(g)*K^k = dB_j/du^i - dB_i/du^j (j)</p>
-<p>for cyclic permutations of i,j,k. This routine does not remove the jacobian factor. The arrays must be passed in as ALLOCATABLE or POINTER to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the s direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the u direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the v direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsend</td><td>Ending row index. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a70004de9e4acdbf6dff1a0ead5d8bb54"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a70004de9e4acdbf6dff1a0ead5d8bb54">&#9670;&nbsp;</a></span>curl_htof_targ()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::curl_htof::curl_htof_targ </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert allocatable to pointer for use in <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a>. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the s direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the u direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the v direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsend</td><td>Ending row index. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>SIESTA/Sources/<a class="el" href="utilities_8f90.html">utilities.f90</a></li>
-</ul>
-</div><!-- contents -->
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-</div>
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-<div class="title">utilities::gradienthalf Member List</div>  </div>
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-<p>This is the complete list of members for <a class="el" href="interfaceutilities_1_1gradienthalf.html">utilities::gradienthalf</a>, including all inherited members.</p>
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-  <tr class="even"><td class="entry"><a class="el" href="interfaceutilities_1_1gradienthalf.html#a09e6db5e1b08df84f065b2c2a7ab9ecd">gradienthalf</a>(gradienth, vecf)</td><td class="entry"><a class="el" href="interfaceutilities_1_1gradienthalf.html">utilities::gradienthalf</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="interfaceutilities_1_1gradienthalf.html#adebed6b465981649c360d7a4f6bac562">gradienthalf_p</a>(gradienth, vecf)</td><td class="entry"><a class="el" href="interfaceutilities_1_1gradienthalf.html">utilities::gradienthalf</a></td><td class="entry"></td></tr>
-</table></div><!-- contents -->
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-</div>
-</div><!-- top -->
-<div class="header">
-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="interfaceutilities_1_1gradienthalf-members.html">List of all members</a>  </div>
-  <div class="headertitle">
-<div class="title">utilities::gradienthalf Interface Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Interface to take the gradianet from full to half mesh using either GradientHalf or GradientHalf_p.  
- <a href="interfaceutilities_1_1gradienthalf.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a09e6db5e1b08df84f065b2c2a7ab9ecd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1gradienthalf.html#a09e6db5e1b08df84f065b2c2a7ab9ecd">gradienthalf</a> (gradienth, vecf)</td></tr>
-<tr class="memdesc:a09e6db5e1b08df84f065b2c2a7ab9ecd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the gradient to the half mesh from a full mesh quantity.  <a href="interfaceutilities_1_1gradienthalf.html#a09e6db5e1b08df84f065b2c2a7ab9ecd">More...</a><br /></td></tr>
-<tr class="separator:a09e6db5e1b08df84f065b2c2a7ab9ecd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adebed6b465981649c360d7a4f6bac562"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1gradienthalf.html#adebed6b465981649c360d7a4f6bac562">gradienthalf_p</a> (gradienth, vecf)</td></tr>
-<tr class="memdesc:adebed6b465981649c360d7a4f6bac562"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the gradient to the half mesh from a full mesh quantity.  <a href="interfaceutilities_1_1gradienthalf.html#adebed6b465981649c360d7a4f6bac562">More...</a><br /></td></tr>
-<tr class="separator:adebed6b465981649c360d7a4f6bac562"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface to take the gradianet from full to half mesh using either GradientHalf or GradientHalf_p. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a09e6db5e1b08df84f065b2c2a7ab9ecd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a09e6db5e1b08df84f065b2c2a7ab9ecd">&#9670;&nbsp;</a></span>gradienthalf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::gradienthalf::gradienthalf </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>gradienth</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculate the gradient to the half mesh from a full mesh quantity. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gradienth</td><td>Gradient on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="adebed6b465981649c360d7a4f6bac562"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adebed6b465981649c360d7a4f6bac562">&#9670;&nbsp;</a></span>gradienthalf_p()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::gradienthalf::gradienthalf_p </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>gradienth</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculate the gradient to the half mesh from a full mesh quantity. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds. Full vector is passed in as a pointer.</p>
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diff --git a/html/interfaceutilities_1_1set__bndy__fouier__m0.html b/html/interfaceutilities_1_1set__bndy__fouier__m0.html
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-  <div class="summary">
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-<p>Interface to set the fouier conditions on a quantity for either scalar <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> or vector <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> quantities.  
- <a href="interfaceutilities_1_1set__bndy__fouier__m0.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a4d1d70cf3dc699a6e20d8fd24f224687"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#a4d1d70cf3dc699a6e20d8fd24f224687">set_bndy_fouier_m0</a> (amn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a4d1d70cf3dc699a6e20d8fd24f224687"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set vector fourier conditions.  <a href="interfaceutilities_1_1set__bndy__fouier__m0.html#a4d1d70cf3dc699a6e20d8fd24f224687">More...</a><br /></td></tr>
-<tr class="separator:a4d1d70cf3dc699a6e20d8fd24f224687"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa6053635f4d12e9d6be78a9089ca9470"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> (amns, amnu, amnv, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:aa6053635f4d12e9d6be78a9089ca9470"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set vector fourier conditions.  <a href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">More...</a><br /></td></tr>
-<tr class="separator:aa6053635f4d12e9d6be78a9089ca9470"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface to set the fouier conditions on a quantity for either scalar <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> or vector <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> quantities. </p>
-</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
-<a id="a4d1d70cf3dc699a6e20d8fd24f224687"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4d1d70cf3dc699a6e20d8fd24f224687">&#9670;&nbsp;</a></span>set_bndy_fouier_m0()</h2>
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-<div class="memitem">
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-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
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-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-
-<p>Set vector fourier conditions. </p>
-<p>For fouier modes for m=0 and for the negative n modes. The n=0 modes are zero for quantities with sin parity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amn</td><td>Fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fouier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="aa6053635f4d12e9d6be78a9089ca9470"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa6053635f4d12e9d6be78a9089ca9470">&#9670;&nbsp;</a></span>set_bndy_fouier_m0_vec()</h2>
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-<div class="memitem">
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-          <td class="memname">pure subroutine utilities::set_bndy_fouier_m0::set_bndy_fouier_m0_vec </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amns</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnu</em>, </td>
-        </tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnv</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Set vector fourier conditions. </p>
-<p>For fouier modes for m=0 and for the negative n modes. The n=0 modes are zero for quantities with sin parity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amns</td><td>Fourier quantity for s component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnu</td><td>Fourier quantity for u component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnv</td><td>Fourier quantity for v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fouier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>SIESTA/Sources/<a class="el" href="utilities_8f90.html">utilities.f90</a></li>
-</ul>
-</div><!-- contents -->
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diff --git a/html/interfaceutilities_1_1to__full__mesh.html b/html/interfaceutilities_1_1to__full__mesh.html
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-  <div class="headertitle">
-<div class="title">utilities::to_full_mesh Interface Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Interface to convert between half and full mesh using either <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> or <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">to_full_mesh3</a>.  
- <a href="interfaceutilities_1_1to__full__mesh.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a0c6757ea338f495f18375613bd2a6293"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> (vech, vecf)</td></tr>
-<tr class="memdesc:a0c6757ea338f495f18375613bd2a6293"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrate a two dimensional quantity form the half mesh to the full mesh.  <a href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">More...</a><br /></td></tr>
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-<tr class="memdesc:ad18ac9c59de0be0ef44492ebe05a1ea7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrate a three dimensional quantity form the half mesh to the full mesh.  <a href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">More...</a><br /></td></tr>
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-<div class="textblock"><p>Interface to convert between half and full mesh using either <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> or <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">to_full_mesh3</a>. </p>
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-<h2 class="memtitle"><span class="permalink"><a href="#a0c6757ea338f495f18375613bd2a6293">&#9670;&nbsp;</a></span>to_full_mesh2()</h2>
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-          <td>(</td>
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-          <td class="paramname"><em>vech</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>vecf</em>&#160;</td>
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-
-<p>Migrate a two dimensional quantity form the half mesh to the full mesh. </p>
-<p>First and last point are extrapolated linearly. The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vech</td><td>Half mesh qantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vecf</td><td>Full mesh quantity. </td></tr>
-  </table>
-  </dd>
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-
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-<a id="ad18ac9c59de0be0ef44492ebe05a1ea7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad18ac9c59de0be0ef44492ebe05a1ea7">&#9670;&nbsp;</a></span>to_full_mesh3()</h2>
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-          <td class="memname">subroutine utilities::to_full_mesh::to_full_mesh3 </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Migrate a three dimensional quantity form the half mesh to the full mesh. </p>
-<p>First and last point are extrapolated linearly. The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vech</td><td>Half mesh qantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vecf</td><td>Full mesh quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>SIESTA/Sources/<a class="el" href="utilities_8f90.html">utilities.f90</a></li>
-</ul>
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diff --git a/html/interfaceutilities_1_1to__half__mesh.html b/html/interfaceutilities_1_1to__half__mesh.html
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-<div class="title">utilities::to_half_mesh Interface Reference</div>  </div>
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-<p>Interface to convert between full and half mesh using either <a class="el" href="interfaceutilities_1_1to__half__mesh.html">to_half_mesh</a> or <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a17173a22873cc4031419a3f79fcb5abe">to_half_mesh_p</a>.  
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Migrates a full mesh quantity to the half mesh. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vech</td><td>Half grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<tr class="memitem:a4cf2357c5f3fcfc18f57dc8f67c5d21a"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__construct.html#a4cf2357c5f3fcfc18f57dc8f67c5d21a">param_construct_basic</a> (a_model, param_name, indices, num_params)</td></tr>
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-<tr class="memdesc:a0d8b990c67ee679f2035bea22d161331"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="interfacev3fit__params_1_1param__construct.html#a0d8b990c67ee679f2035bea22d161331">More...</a><br /></td></tr>
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-<p>Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. Parameters are converted from strings to an internal id representation by either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. This version is used to construct locking parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name of the parameter. </td></tr>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">set</td><td>Array of parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">set_indices</td><td>Array of parameters indices for parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">set_coeff</td><td>Coefficients for the parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </dd></dl>
-
-</div>
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-          <td>(</td>
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-          <td class="paramname"><em>a_model</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>indices</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>vrnc</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_type</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2,2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_params</em>&#160;</td>
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-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. Parameters are converted from strings to an internal id representation by either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. This version is used to construct reconstruction parameters.</p>
-<p>Parameter boundaries are specified by a range type. This range type may be one of three types. 'infinity' represents an unbounded case. 'value' represents a bounds by a fixed value. By specifying another parameter name, the boundary will be bounded by a fixed or varying parameter. The bounding parameter string is converted into an internal id representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>An instance of a <a class="el" href="namespacemodel.html">model</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>The array indices of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vrnc</td><td>The maximum incremental step size. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_type</td><td>Range type of the bounds. Values can be 'infinity', 'value' or the name of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_indices</td><td>The array indices of the boundary parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_value</td><td>Value of a boundary. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_signals</td><td>Number of signals. Used to determine the size of the <a class="el" href="structv3fit__params_1_1param__recon__class.html#a3426102cdc2791aa5bf82e29d9c3f056">param_recon_class::sem</a> arrays. </td></tr>
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-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="v3fit__params_8f.html">v3fit_params.f</a></li>
-</ul>
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-<div class="header">
-  <div class="summary">
-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="interfacev3fit__params_1_1param__write__step__data-members.html">List of all members</a>  </div>
-  <div class="headertitle">
-<div class="title">v3fit_params::param_write_step_data Interface Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Interface for the writting of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> data to the result file using <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">param_write_step_data_1</a> or <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">param_write_step_data_2</a>.  
- <a href="interfacev3fit__params_1_1param__write__step__data.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
-Public Member Functions</h2></td></tr>
-<tr class="memitem:a94c0f0d853dc173a22a337974b97ef4c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">param_write_step_data_1</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id, param_sem_id)</td></tr>
-<tr class="memdesc:a94c0f0d853dc173a22a337974b97ef4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">More...</a><br /></td></tr>
-<tr class="separator:a94c0f0d853dc173a22a337974b97ef4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaa94ac083b4e6cb83808ad1f6bca5be0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">param_write_step_data_2</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id)</td></tr>
-<tr class="memdesc:aaa94ac083b4e6cb83808ad1f6bca5be0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">More...</a><br /></td></tr>
-<tr class="separator:aaa94ac083b4e6cb83808ad1f6bca5be0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Interface for the writting of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> data to the result file using <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">param_write_step_data_1</a> or <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">param_write_step_data_2</a>. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a94c0f0d853dc173a22a337974b97ef4c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a94c0f0d853dc173a22a337974b97ef4c">&#9670;&nbsp;</a></span>param_write_step_data_1()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine v3fit_params::param_write_step_data::param_write_step_data_1 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_value_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_sigma_id</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_corr_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_sem_id</em>&#160;</td>
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-        <tr>
-          <td></td>
-          <td>)</td>
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-
-<p>Write out the parameter data for a step to the result netcdf file. </p>
-<p>Writes out the parameter value, sigma and signal effectiveness matrix to the result file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>A NetCDF id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>The surrent reconstruction step. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_value_id</td><td>NetCDF variable id of the parameter value. </td></tr>
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-<dl class="params"><dt>Parameters</dt><dd>
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_corr_id</td><td>NetCDF variable id of the parameter correlation. </td></tr>
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_sem_id</td><td>NetCDF variable id of the parameter signal effectiveness. </td></tr>
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-          <td class="memname">subroutine v3fit_params::param_write_step_data::param_write_step_data_2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
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-          <td class="paramname"><em>a_model</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
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-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td></td>
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-          <td></td>
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-          <td class="paramname"><em>param_sigma_id</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_corr_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-
-<p>Write out the parameter data for a step to the result netcdf file. </p>
-<p>Writes out the parameter value and sigma to the result file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>A NetCDF id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>The surrent reconstruction step. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_value_id</td><td>NetCDF variable id of the parameter value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_sigma_id</td><td>NetCDF variable id of the parameter sigma. </td></tr>
-  </table>
-  </dd>
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-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_corr_id</td><td>NetCDF variable id of the parameter correlation. </td></tr>
-  </table>
-  </dd>
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-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>This assumes that the parameter sigma has already been calculated. Name and index information is written when the result file is first created by <a class="el" href="namespacev3fit__context.html#ae603bd5c6255bc5ac0c713645184a2ba">v3fit_context::v3fit_context_write_step_data</a>. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="v3fit__params_8f.html">v3fit_params.f</a></li>
-</ul>
-</div><!-- contents -->
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-<p>Contains module <a class="el" href="namespaceintpol.html">intpol</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae083fb37be9e68c3e25edac00d37bac7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a20044330381a266a6a55215e0f65b24f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a998b2a7ca70fcdc226e8c45acdc4ba65"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1be34f1fc73e150ac661a2b2ad2d1d29"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a49a4d4cd2b99c3e29f3a1e394a263ea5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9bbd00974daa42c07ce8be5a30db7e0d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1d4f2beb7ef68530032e37e7bb4ccc24"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a97511f36aba9f23a648d268d98ba4536"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9cdcdc7cd704d7eff6070e861a920d9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af99e2161a2c24f23f323d2a8e4937c04"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#af99e2161a2c24f23f323d2a8e4937c04">intpol::intpol_pol_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:af99e2161a2c24f23f323d2a8e4937c04"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a polarimetry signal and a cartesian position.  <a href="namespaceintpol.html#af99e2161a2c24f23f323d2a8e4937c04">More...</a><br /></td></tr>
-<tr class="separator:af99e2161a2c24f23f323d2a8e4937c04"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#aa3d638cb401be5eec5940b8618e80dde">intpol::intpol_polar_constant</a> = 2.62E-13_dp</td></tr>
-<tr class="memdesc:aa3d638cb401be5eec5940b8618e80dde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constant term for the polarimety. <br /></td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceintpol.html">intpol</a>. </p>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#intpol_dot_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#intpol_dot_key_sec">Keywords</a></li>
-<li class="level1"><a href="#intpol_dot_chord_spec_sec">Chord Specification</a></li>
-<li class="level1"><a href="#intpol_dot_exam_sec">Example File</a></li>
-<li class="level1"><a href="#intpol_dot_prog_ref_sec">Programmers Reference</a></li>
-</ul>
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-<div class="textblock"><h1><a class="anchor" id="intpol_dot_intro_sec"></a>
-Introduction</h1>
-<p>Diagnostic dot files specify geometric and auxiliary information about each diagnostic. Parsing of a diagnostic dot file begins by searching for a valid keyword. All lines before a valid keyword is reached are ignored allowing for comments and other information to be inserted in the file. Once a keyword is reached, the parsing becomes strict. The diagnostic description format is dependant on the specific keyword. All diagnostic dot files must end with an <code>end_of_file</code> keyword.</p>
-<p>This document contains information about the interferometry/polarimetry chord specifications. Chords are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#ae1fe6c8994f39bfe0b7a5b2a576fccdb">v3fit_input::ipch_dot_filename</a> variable of the name list input file. Chords are specified as two verticies in either meters or radians. For polarimetry, wavelengths are specified in meters.</p>
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-Keywords</h1>
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-<tr>
-<td width="30%"><code>ip_chord_XYZ</code><br  />
- <code>ip_chord_XYZ_int</code></td><td width="70%">An interferometer chord specified in Cartesian coordinates. </td></tr>
-<tr>
-<td width="30%"><code>ip_chord_RPhiDegZ</code><br  />
- <code>ip_chord_RPhiDegZ_int</code></td><td width="70%">An interferometer chord specified in Cylindrical coordinates. </td></tr>
-<tr>
-<td width="30%"><code>ip_chord_XYZ_pol_rad</code></td><td width="70%">An polarimetry chord specified in Cartesian coordinates outputting the signal in radians. </td></tr>
-<tr>
-<td width="30%"><code>ip_chord_RPhiDegZ_pol_rad</code></td><td width="70%">An polarimetry chord specified in Cylindrical coordinates outputting the signal in radians. </td></tr>
-<tr>
-<td width="30%"><code>ip_chord_XYZ_pol_deg</code></td><td width="70%">An polarimetry chord specified in Cartesian coordinates outputting the signal in degress. </td></tr>
-<tr>
-<td width="30%"><code>ip_chord_RPhiDegZ_pol_deg</code></td><td width="70%">An polarimetry chord specified in Cylindrical coordinates outputting the signal in degress. </td></tr>
-</table>
-<h1><a class="anchor" id="intpol_dot_chord_spec_sec"></a>
-Chord Specification</h1>
-<p>All interferometry chords are specified in the following manner.</p>
-<p><code>key_word<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>x2(REAL) y2(REAL) z2(REAL)<br  />
-</code></p>
-<p>All Polarimetry chords are specified in the following manner with the wave length .</p>
-<p><code>key_word<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>x2(REAL) y2(REAL) z2(REAL)<br  />
-</code> <code>wavelength(REAL)<br  />
-</code></p>
-<h1><a class="anchor" id="intpol_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  An interferometer chord specified in Cartesian coordinates.</span></div>
-<div class="line">ip_chord_xyz_int</div>
-<div class="line">int001</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  An interferometer chord specified in Cylindrical coordinates.</span></div>
-<div class="line">ip_chord_rphidegz_int</div>
-<div class="line">int002</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A polarimetry chord specified in Cartesian coordinates.</span></div>
-<div class="line">ip_chord_xyz_pol_deg</div>
-<div class="line">pol001</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line">1.0e-5</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A polarimetry chord specified in Cylindrical coordinates.</span></div>
-<div class="line">ip_chord_rphidegz_pol_deg</div>
-<div class="line">int002</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line">1.0e-5</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h1><a class="anchor" id="intpol_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespaceipch__dot.html">ipch_dot</a> modules. </p>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceisland__params.html">island_params</a>. </p>
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setTimeout(i,e||0)},_hoverable:function(e){this.hoverable=this.hoverable.add(e),this._on(e,{mouseenter:function(e){this._addClass(t(e.currentTarget),null,"ui-state-hover")},mouseleave:function(e){this._removeClass(t(e.currentTarget),null,"ui-state-hover")}})},_focusable:function(e){this.focusable=this.focusable.add(e),this._on(e,{focusin:function(e){this._addClass(t(e.currentTarget),null,"ui-state-focus")},focusout:function(e){this._removeClass(t(e.currentTarget),null,"ui-state-focus")}})},_trigger:function(e,i,s){var n,o,a=this.options[e];if(s=s||{},i=t.Event(i),i.type=(e===this.widgetEventPrefix?e:this.widgetEventPrefix+e).toLowerCase(),i.target=this.element[0],o=i.originalEvent)for(n in o)n in i||(i[n]=o[n]);return this.element.trigger(i,s),!(t.isFunction(a)&&a.apply(this.element[0],[i].concat(s))===!1||i.isDefaultPrevented())}},t.each({show:"fadeIn",hide:"fadeOut"},function(e,i){t.Widget.prototype["_"+e]=function(s,n,o){"string"==typeof n&&(n={effect:n});var a,r=n?n===!0||"number"==typeof n?i:n.effect||i:e;n=n||{},"number"==typeof n&&(n={duration:n}),a=!t.isEmptyObject(n),n.complete=o,n.delay&&s.delay(n.delay),a&&t.effects&&t.effects.effect[r]?s[e](n):r!==e&&s[r]?s[r](n.duration,n.easing,o):s.queue(function(i){t(this)[e](),o&&o.call(s[0]),i()})}}),t.widget,function(){function e(t,e,i){return[parseFloat(t[0])*(u.test(t[0])?e/100:1),parseFloat(t[1])*(u.test(t[1])?i/100:1)]}function i(e,i){return parseInt(t.css(e,i),10)||0}function s(e){var i=e[0];return 9===i.nodeType?{width:e.width(),height:e.height(),offset:{top:0,left:0}}:t.isWindow(i)?{width:e.width(),height:e.height(),offset:{top:e.scrollTop(),left:e.scrollLeft()}}:i.preventDefault?{width:0,height:0,offset:{top:i.pageY,left:i.pageX}}:{width:e.outerWidth(),height:e.outerHeight(),offset:e.offset()}}var n,o=Math.max,a=Math.abs,r=/left|center|right/,h=/top|center|bottom/,l=/[\+\-]\d+(\.[\d]+)?%?/,c=/^\w+/,u=/%$/,d=t.fn.position;t.position={scrollbarWidth:function(){if(void 0!==n)return n;var e,i,s=t("<div style='display:block;position:absolute;width:50px;height:50px;overflow:hidden;'><div style='height:100px;width:auto;'></div></div>"),o=s.children()[0];return t("body").append(s),e=o.offsetWidth,s.css("overflow","scroll"),i=o.offsetWidth,e===i&&(i=s[0].clientWidth),s.remove(),n=e-i},getScrollInfo:function(e){var i=e.isWindow||e.isDocument?"":e.element.css("overflow-x"),s=e.isWindow||e.isDocument?"":e.element.css("overflow-y"),n="scroll"===i||"auto"===i&&e.width<e.element[0].scrollWidth,o="scroll"===s||"auto"===s&&e.height<e.element[0].scrollHeight;return{width:o?t.position.scrollbarWidth():0,height:n?t.position.scrollbarWidth():0}},getWithinInfo:function(e){var i=t(e||window),s=t.isWindow(i[0]),n=!!i[0]&&9===i[0].nodeType,o=!s&&!n;return{element:i,isWindow:s,isDocument:n,offset:o?t(e).offset():{left:0,top:0},scrollLeft:i.scrollLeft(),scrollTop:i.scrollTop(),width:i.outerWidth(),height:i.outerHeight()}}},t.fn.position=function(n){if(!n||!n.of)return d.apply(this,arguments);n=t.extend({},n);var u,p,f,m,g,_,v=t(n.of),b=t.position.getWithinInfo(n.within),y=t.position.getScrollInfo(b),w=(n.collision||"flip").split(" "),x={};return _=s(v),v[0].preventDefault&&(n.at="left top"),p=_.width,f=_.height,m=_.offset,g=t.extend({},m),t.each(["my","at"],function(){var t,e,i=(n[this]||"").split(" ");1===i.length&&(i=r.test(i[0])?i.concat(["center"]):h.test(i[0])?["center"].concat(i):["center","center"]),i[0]=r.test(i[0])?i[0]:"center",i[1]=h.test(i[1])?i[1]:"center",t=l.exec(i[0]),e=l.exec(i[1]),x[this]=[t?t[0]:0,e?e[0]:0],n[this]=[c.exec(i[0])[0],c.exec(i[1])[0]]}),1===w.length&&(w[1]=w[0]),"right"===n.at[0]?g.left+=p:"center"===n.at[0]&&(g.left+=p/2),"bottom"===n.at[1]?g.top+=f:"center"===n.at[1]&&(g.top+=f/2),u=e(x.at,p,f),g.left+=u[0],g.top+=u[1],this.each(function(){var s,r,h=t(this),l=h.outerWidth(),c=h.outerHeight(),d=i(this,"marginLeft"),_=i(this,"marginTop"),k=l+d+i(this,"marginRight")+y.width,C=c+_+i(this,"marginBottom")+y.height,D=t.extend({},g),T=e(x.my,h.outerWidth(),h.outerHeight());"right"===n.my[0]?D.left-=l:"center"===n.my[0]&&(D.left-=l/2),"bottom"===n.my[1]?D.top-=c:"center"===n.my[1]&&(D.top-=c/2),D.left+=T[0],D.top+=T[1],s={marginLeft:d,marginTop:_},t.each(["left","top"],function(e,i){t.ui.position[w[e]]&&t.ui.position[w[e]][i](D,{targetWidth:p,targetHeight:f,elemWidth:l,elemHeight:c,collisionPosition:s,collisionWidth:k,collisionHeight:C,offset:[u[0]+T[0],u[1]+T[1]],my:n.my,at:n.at,within:b,elem:h})}),n.using&&(r=function(t){var e=m.left-D.left,i=e+p-l,s=m.top-D.top,r=s+f-c,u={target:{element:v,left:m.left,top:m.top,width:p,height:f},element:{element:h,left:D.left,top:D.top,width:l,height:c},horizontal:0>i?"left":e>0?"right":"center",vertical:0>r?"top":s>0?"bottom":"middle"};l>p&&p>a(e+i)&&(u.horizontal="center"),c>f&&f>a(s+r)&&(u.vertical="middle"),u.important=o(a(e),a(i))>o(a(s),a(r))?"horizontal":"vertical",n.using.call(this,t,u)}),h.offset(t.extend(D,{using:r}))})},t.ui.position={fit:{left:function(t,e){var i,s=e.within,n=s.isWindow?s.scrollLeft:s.offset.left,a=s.width,r=t.left-e.collisionPosition.marginLeft,h=n-r,l=r+e.collisionWidth-a-n;e.collisionWidth>a?h>0&&0>=l?(i=t.left+h+e.collisionWidth-a-n,t.left+=h-i):t.left=l>0&&0>=h?n:h>l?n+a-e.collisionWidth:n:h>0?t.left+=h:l>0?t.left-=l:t.left=o(t.left-r,t.left)},top:function(t,e){var i,s=e.within,n=s.isWindow?s.scrollTop:s.offset.top,a=e.within.height,r=t.top-e.collisionPosition.marginTop,h=n-r,l=r+e.collisionHeight-a-n;e.collisionHeight>a?h>0&&0>=l?(i=t.top+h+e.collisionHeight-a-n,t.top+=h-i):t.top=l>0&&0>=h?n:h>l?n+a-e.collisionHeight:n:h>0?t.top+=h:l>0?t.top-=l:t.top=o(t.top-r,t.top)}},flip:{left:function(t,e){var i,s,n=e.within,o=n.offset.left+n.scrollLeft,r=n.width,h=n.isWindow?n.scrollLeft:n.offset.left,l=t.left-e.collisionPosition.marginLeft,c=l-h,u=l+e.collisionWidth-r-h,d="left"===e.my[0]?-e.elemWidth:"right"===e.my[0]?e.elemWidth:0,p="left"===e.at[0]?e.targetWidth:"right"===e.at[0]?-e.targetWidth:0,f=-2*e.offset[0];0>c?(i=t.left+d+p+f+e.collisionWidth-r-o,(0>i||a(c)>i)&&(t.left+=d+p+f)):u>0&&(s=t.left-e.collisionPosition.marginLeft+d+p+f-h,(s>0||u>a(s))&&(t.left+=d+p+f))},top:function(t,e){var i,s,n=e.within,o=n.offset.top+n.scrollTop,r=n.height,h=n.isWindow?n.scrollTop:n.offset.top,l=t.top-e.collisionPosition.marginTop,c=l-h,u=l+e.collisionHeight-r-h,d="top"===e.my[1],p=d?-e.elemHeight:"bottom"===e.my[1]?e.elemHeight:0,f="top"===e.at[1]?e.targetHeight:"bottom"===e.at[1]?-e.targetHeight:0,m=-2*e.offset[1];0>c?(s=t.top+p+f+m+e.collisionHeight-r-o,(0>s||a(c)>s)&&(t.top+=p+f+m)):u>0&&(i=t.top-e.collisionPosition.marginTop+p+f+m-h,(i>0||u>a(i))&&(t.top+=p+f+m))}},flipfit:{left:function(){t.ui.position.flip.left.apply(this,arguments),t.ui.position.fit.left.apply(this,arguments)},top:function(){t.ui.position.flip.top.apply(this,arguments),t.ui.position.fit.top.apply(this,arguments)}}}}(),t.ui.position,t.extend(t.expr[":"],{data:t.expr.createPseudo?t.expr.createPseudo(function(e){return function(i){return!!t.data(i,e)}}):function(e,i,s){return!!t.data(e,s[3])}}),t.fn.extend({disableSelection:function(){var t="onselectstart"in document.createElement("div")?"selectstart":"mousedown";return function(){return this.on(t+".ui-disableSelection",function(t){t.preventDefault()})}}(),enableSelection:function(){return this.off(".ui-disableSelection")}}),t.ui.focusable=function(i,s){var n,o,a,r,h,l=i.nodeName.toLowerCase();return"area"===l?(n=i.parentNode,o=n.name,i.href&&o&&"map"===n.nodeName.toLowerCase()?(a=t("img[usemap='#"+o+"']"),a.length>0&&a.is(":visible")):!1):(/^(input|select|textarea|button|object)$/.test(l)?(r=!i.disabled,r&&(h=t(i).closest("fieldset")[0],h&&(r=!h.disabled))):r="a"===l?i.href||s:s,r&&t(i).is(":visible")&&e(t(i)))},t.extend(t.expr[":"],{focusable:function(e){return t.ui.focusable(e,null!=t.attr(e,"tabindex"))}}),t.ui.focusable,t.fn.form=function(){return"string"==typeof this[0].form?this.closest("form"):t(this[0].form)},t.ui.formResetMixin={_formResetHandler:function(){var e=t(this);setTimeout(function(){var i=e.data("ui-form-reset-instances");t.each(i,function(){this.refresh()})})},_bindFormResetHandler:function(){if(this.form=this.element.form(),this.form.length){var t=this.form.data("ui-form-reset-instances")||[];t.length||this.form.on("reset.ui-form-reset",this._formResetHandler),t.push(this),this.form.data("ui-form-reset-instances",t)}},_unbindFormResetHandler:function(){if(this.form.length){var e=this.form.data("ui-form-reset-instances");e.splice(t.inArray(this,e),1),e.length?this.form.data("ui-form-reset-instances",e):this.form.removeData("ui-form-reset-instances").off("reset.ui-form-reset")}}},"1.7"===t.fn.jquery.substring(0,3)&&(t.each(["Width","Height"],function(e,i){function s(e,i,s,o){return t.each(n,function(){i-=parseFloat(t.css(e,"padding"+this))||0,s&&(i-=parseFloat(t.css(e,"border"+this+"Width"))||0),o&&(i-=parseFloat(t.css(e,"margin"+this))||0)}),i}var n="Width"===i?["Left","Right"]:["Top","Bottom"],o=i.toLowerCase(),a={innerWidth:t.fn.innerWidth,innerHeight:t.fn.innerHeight,outerWidth:t.fn.outerWidth,outerHeight:t.fn.outerHeight};t.fn["inner"+i]=function(e){return void 0===e?a["inner"+i].call(this):this.each(function(){t(this).css(o,s(this,e)+"px")})},t.fn["outer"+i]=function(e,n){return"number"!=typeof e?a["outer"+i].call(this,e):this.each(function(){t(this).css(o,s(this,e,!0,n)+"px")})}}),t.fn.addBack=function(t){return this.add(null==t?this.prevObject:this.prevObject.filter(t))}),t.ui.keyCode={BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38},t.ui.escapeSelector=function(){var t=/([!"#$%&'()*+,./:;<=>?@[\]^`{|}~])/g;return function(e){return e.replace(t,"\\$1")}}(),t.fn.labels=function(){var e,i,s,n,o;return this[0].labels&&this[0].labels.length?this.pushStack(this[0].labels):(n=this.eq(0).parents("label"),s=this.attr("id"),s&&(e=this.eq(0).parents().last(),o=e.add(e.length?e.siblings():this.siblings()),i="label[for='"+t.ui.escapeSelector(s)+"']",n=n.add(o.find(i).addBack(i))),this.pushStack(n))},t.fn.scrollParent=function(e){var i=this.css("position"),s="absolute"===i,n=e?/(auto|scroll|hidden)/:/(auto|scroll)/,o=this.parents().filter(function(){var e=t(this);return s&&"static"===e.css("position")?!1:n.test(e.css("overflow")+e.css("overflow-y")+e.css("overflow-x"))}).eq(0);return"fixed"!==i&&o.length?o:t(this[0].ownerDocument||document)},t.extend(t.expr[":"],{tabbable:function(e){var i=t.attr(e,"tabindex"),s=null!=i;return(!s||i>=0)&&t.ui.focusable(e,s)}}),t.fn.extend({uniqueId:function(){var t=0;return function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++t)})}}(),removeUniqueId:function(){return this.each(function(){/^ui-id-\d+$/.test(this.id)&&t(this).removeAttr("id")})}}),t.ui.ie=!!/msie [\w.]+/.exec(navigator.userAgent.toLowerCase());var n=!1;t(document).on("mouseup",function(){n=!1}),t.widget("ui.mouse",{version:"1.12.1",options:{cancel:"input, textarea, button, select, option",distance:1,delay:0},_mouseInit:function(){var e=this;this.element.on("mousedown."+this.widgetName,function(t){return e._mouseDown(t)}).on("click."+this.widgetName,function(i){return!0===t.data(i.target,e.widgetName+".preventClickEvent")?(t.removeData(i.target,e.widgetName+".preventClickEvent"),i.stopImmediatePropagation(),!1):void 0}),this.started=!1},_mouseDestroy:function(){this.element.off("."+this.widgetName),this._mouseMoveDelegate&&this.document.off("mousemove."+this.widgetName,this._mouseMoveDelegate).off("mouseup."+this.widgetName,this._mouseUpDelegate)},_mouseDown:function(e){if(!n){this._mouseMoved=!1,this._mouseStarted&&this._mouseUp(e),this._mouseDownEvent=e;var i=this,s=1===e.which,o="string"==typeof this.options.cancel&&e.target.nodeName?t(e.target).closest(this.options.cancel).length:!1;return s&&!o&&this._mouseCapture(e)?(this.mouseDelayMet=!this.options.delay,this.mouseDelayMet||(this._mouseDelayTimer=setTimeout(function(){i.mouseDelayMet=!0},this.options.delay)),this._mouseDistanceMet(e)&&this._mouseDelayMet(e)&&(this._mouseStarted=this._mouseStart(e)!==!1,!this._mouseStarted)?(e.preventDefault(),!0):(!0===t.data(e.target,this.widgetName+".preventClickEvent")&&t.removeData(e.target,this.widgetName+".preventClickEvent"),this._mouseMoveDelegate=function(t){return i._mouseMove(t)},this._mouseUpDelegate=function(t){return i._mouseUp(t)},this.document.on("mousemove."+this.widgetName,this._mouseMoveDelegate).on("mouseup."+this.widgetName,this._mouseUpDelegate),e.preventDefault(),n=!0,!0)):!0}},_mouseMove:function(e){if(this._mouseMoved){if(t.ui.ie&&(!document.documentMode||9>document.documentMode)&&!e.button)return this._mouseUp(e);if(!e.which)if(e.originalEvent.altKey||e.originalEvent.ctrlKey||e.originalEvent.metaKey||e.originalEvent.shiftKey)this.ignoreMissingWhich=!0;else if(!this.ignoreMissingWhich)return this._mouseUp(e)}return(e.which||e.button)&&(this._mouseMoved=!0),this._mouseStarted?(this._mouseDrag(e),e.preventDefault()):(this._mouseDistanceMet(e)&&this._mouseDelayMet(e)&&(this._mouseStarted=this._mouseStart(this._mouseDownEvent,e)!==!1,this._mouseStarted?this._mouseDrag(e):this._mouseUp(e)),!this._mouseStarted)},_mouseUp:function(e){this.document.off("mousemove."+this.widgetName,this._mouseMoveDelegate).off("mouseup."+this.widgetName,this._mouseUpDelegate),this._mouseStarted&&(this._mouseStarted=!1,e.target===this._mouseDownEvent.target&&t.data(e.target,this.widgetName+".preventClickEvent",!0),this._mouseStop(e)),this._mouseDelayTimer&&(clearTimeout(this._mouseDelayTimer),delete this._mouseDelayTimer),this.ignoreMissingWhich=!1,n=!1,e.preventDefault()},_mouseDistanceMet:function(t){return Math.max(Math.abs(this._mouseDownEvent.pageX-t.pageX),Math.abs(this._mouseDownEvent.pageY-t.pageY))>=this.options.distance},_mouseDelayMet:function(){return this.mouseDelayMet},_mouseStart:function(){},_mouseDrag:function(){},_mouseStop:function(){},_mouseCapture:function(){return!0}}),t.ui.plugin={add:function(e,i,s){var n,o=t.ui[e].prototype;for(n in s)o.plugins[n]=o.plugins[n]||[],o.plugins[n].push([i,s[n]])},call:function(t,e,i,s){var n,o=t.plugins[e];if(o&&(s||t.element[0].parentNode&&11!==t.element[0].parentNode.nodeType))for(n=0;o.length>n;n++)t.options[o[n][0]]&&o[n][1].apply(t.element,i)}},t.widget("ui.resizable",t.ui.mouse,{version:"1.12.1",widgetEventPrefix:"resize",options:{alsoResize:!1,animate:!1,animateDuration:"slow",animateEasing:"swing",aspectRatio:!1,autoHide:!1,classes:{"ui-resizable-se":"ui-icon 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hidden;'></div>").css({position:this.element.css("position"),width:this.element.outerWidth(),height:this.element.outerHeight(),top:this.element.css("top"),left:this.element.css("left")})),this.element=this.element.parent().data("ui-resizable",this.element.resizable("instance")),this.elementIsWrapper=!0,e={marginTop:this.originalElement.css("marginTop"),marginRight:this.originalElement.css("marginRight"),marginBottom:this.originalElement.css("marginBottom"),marginLeft:this.originalElement.css("marginLeft")},this.element.css(e),this.originalElement.css("margin",0),this.originalResizeStyle=this.originalElement.css("resize"),this.originalElement.css("resize","none"),this._proportionallyResizeElements.push(this.originalElement.css({position:"static",zoom:1,display:"block"})),this.originalElement.css(e),this._proportionallyResize()),this._setupHandles(),i.autoHide&&t(this.element).on("mouseenter",function(){i.disabled||(s._removeClass("ui-resizable-autohide"),s._handles.show())}).on("mouseleave",function(){i.disabled||s.resizing||(s._addClass("ui-resizable-autohide"),s._handles.hide())}),this._mouseInit()},_destroy:function(){this._mouseDestroy();var 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- https://raw.github.com/stevenbenner/jquery-powertip/master/LICENSE.txt
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apiShowTip(element,event){if(isMouseEvent(event)){trackMouse(event);session.previousX=event.pageX;session.previousY=event.pageY;$(element).data(DATA_DISPLAYCONTROLLER).show()}else{$(element).first().data(DATA_DISPLAYCONTROLLER).show(true,true)}return element},reposition:function apiResetPosition(element){$(element).first().data(DATA_DISPLAYCONTROLLER).resetPosition();return element},hide:function apiCloseTip(element,immediate){var displayController;immediate=element?immediate:true;if(element){displayController=$(element).first().data(DATA_DISPLAYCONTROLLER)}else if(session.activeHover){displayController=session.activeHover.data(DATA_DISPLAYCONTROLLER)}if(displayController){displayController.hide(immediate)}return element},toggle:function apiToggle(element,event){if(session.activeHover&&session.activeHover.is(element)){$.powerTip.hide(element,!isMouseEvent(event))}else{$.powerTip.show(element,event)}return element}};$.powerTip.showTip=$.powerTip.show;$.powerTip.closeTip=$.powerTip.hide;function CSSCoordinates(){var me=this;me.top="auto";me.left="auto";me.right="auto";me.bottom="auto";me.set=function(property,value){if($.isNumeric(value)){me[property]=Math.round(value)}}}function DisplayController(element,options,tipController){var hoverTimer=null,myCloseDelay=null;function openTooltip(immediate,forceOpen){cancelTimer();if(!element.data(DATA_HASACTIVEHOVER)){if(!immediate){session.tipOpenImminent=true;hoverTimer=setTimeout(function intentDelay(){hoverTimer=null;checkForIntent()},options.intentPollInterval)}else{if(forceOpen){element.data(DATA_FORCEDOPEN,true)}closeAnyDelayed();tipController.showTip(element)}}else{cancelClose()}}function 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CSSCoordinates,position;if(isSvgElement(element)){position=getSvgPlacement(element,placementBase)}else{position=getHtmlPlacement(element,placementBase)}switch(placement){case"n":coords.set("left",position.left-tipWidth/2);coords.set("bottom",session.windowHeight-position.top+offset);break;case"e":coords.set("left",position.left+offset);coords.set("top",position.top-tipHeight/2);break;case"s":coords.set("left",position.left-tipWidth/2);coords.set("top",position.top+offset);break;case"w":coords.set("top",position.top-tipHeight/2);coords.set("right",session.windowWidth-position.left+offset);break;case"nw":coords.set("bottom",session.windowHeight-position.top+offset);coords.set("right",session.windowWidth-position.left-20);break;case"nw-alt":coords.set("left",position.left);coords.set("bottom",session.windowHeight-position.top+offset);break;case"ne":coords.set("left",position.left-20);coords.set("bottom",session.windowHeight-position.top+offset);break;case"ne-alt":coords.set("bottom",session.windowHeight-position.top+offset);coords.set("right",session.windowWidth-position.left);break;case"sw":coords.set("top",position.top+offset);coords.set("right",session.windowWidth-position.left-20);break;case"sw-alt":coords.set("left",position.left);coords.set("top",position.top+offset);break;case"se":coords.set("left",position.left-20);coords.set("top",position.top+offset);break;case"se-alt":coords.set("top",position.top+offset);coords.set("right",session.windowWidth-position.left);break}return 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svgElement=element.closest("svg")[0],domElement=element[0],point=svgElement.createSVGPoint(),boundingBox=domElement.getBBox(),matrix=domElement.getScreenCTM(),halfWidth=boundingBox.width/2,halfHeight=boundingBox.height/2,placements=[],placementKeys=["nw","n","ne","e","se","s","sw","w"],coords,rotation,steps,x;function pushPlacement(){placements.push(point.matrixTransform(matrix))}point.x=boundingBox.x;point.y=boundingBox.y;pushPlacement();point.x+=halfWidth;pushPlacement();point.x+=halfWidth;pushPlacement();point.y+=halfHeight;pushPlacement();point.y+=halfHeight;pushPlacement();point.x-=halfWidth;pushPlacement();point.x-=halfWidth;pushPlacement();point.y-=halfHeight;pushPlacement();if(placements[0].y!==placements[1].y||placements[0].x!==placements[7].x){rotation=Math.atan2(matrix.b,matrix.a)*RAD2DEG;steps=Math.ceil((rotation%360-22.5)/45);if(steps<1){steps+=8}while(steps--){placementKeys.push(placementKeys.shift())}}for(x=0;x<placements.length;x++){if(placementKeys[x]===placement){coords=placements[x];break}}return{top:coords.y+session.scrollTop,left:coords.x+session.scrollLeft}}this.compute=computePlacementCoords}function TooltipController(options){var placementCalculator=new 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CSSCoordinates;session.activeHover=null;session.isClosing=false;session.isFixedTipOpen=false;tipElement.removeClass();coords.set("top",session.currentY+options.offset);coords.set("left",session.currentX+options.offset);tipElement.css(coords);element.trigger("powerTipClose")})}function positionTipOnCursor(){var tipWidth,tipHeight,coords,collisions,collisionCount;if(!session.isFixedTipOpen&&(session.isTipOpen||session.tipOpenImminent&&tipElement.data(DATA_HASMOUSEMOVE))){tipWidth=tipElement.outerWidth();tipHeight=tipElement.outerHeight();coords=new CSSCoordinates;coords.set("top",session.currentY+options.offset);coords.set("left",session.currentX+options.offset);collisions=getViewportCollisions(coords,tipWidth,tipHeight);if(collisions!==Collision.none){collisionCount=countFlags(collisions);if(collisionCount===1){if(collisions===Collision.right){coords.set("left",session.scrollLeft+session.windowWidth-tipWidth)}else 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r=t.dataSM("level");if(this.activatedItems[r-1]&&this.activatedItems[r-1].dataSM("sub")&&this.activatedItems[r-1].dataSM("sub").is(":visible")&&this.menuHideSubMenus(r-1),o.y=o.up&&o.y>=n||!o.up&&n>=o.y?o.y:Math.abs(n-o.y)>s?o.y+(o.up?s:-s):n,t.css(this.cssTransforms3d?{"-webkit-transform":"translate3d(0, "+o.y+"px, 0)",transform:"translate3d(0, "+o.y+"px, 0)"}:{marginTop:o.y}),mouse&&(o.up&&o.y>o.downEnd||!o.up&&o.y<o.upEnd)&&a.eq(o.up?1:0).show(),o.y==n)mouse&&a.eq(o.up?0:1).hide(),this.menuScrollStop(t);else if(!e){this.opts.scrollAccelerate&&o.step<this.opts.scrollStep&&(o.step+=.2);var h=this;this.scrollTimeout=requestAnimationFrame(function(){h.menuScroll(t)})}},menuScrollMousewheel:function(t,e){if(this.getClosestMenu(e.target)==t[0]){e=e.originalEvent;var i=(e.wheelDelta||-e.detail)>0;t.dataSM("scroll-arrows").eq(i?0:1).is(":visible")&&(t.dataSM("scroll").up=i,this.menuScroll(t,!0))}e.preventDefault()},menuScrollOut:function(t,e){mouse&&(/^scroll-(up|down)/.test((e.relatedTarget||"").className)||(t[0]==e.relatedTarget||$.contains(t[0],e.relatedTarget))&&this.getClosestMenu(e.relatedTarget)==t[0]||t.dataSM("scroll-arrows").css("visibility","hidden"))},menuScrollOver:function(t,e){if(mouse&&!/^scroll-(up|down)/.test(e.target.className)&&this.getClosestMenu(e.target)==t[0]){this.menuScrollRefreshData(t);var i=t.dataSM("scroll"),s=$(window).scrollTop()-t.dataSM("parent-a").offset().top-i.itemH;t.dataSM("scroll-arrows").eq(0).css("margin-top",s).end().eq(1).css("margin-top",s+this.getViewportHeight()-i.arrowDownH).end().css("visibility","visible")}},menuScrollRefreshData:function(t){var 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e=t.dataSM("parent-a"),i=this.isCollapsible();if((this.opts.keepHighlighted||i)&&e.addClass("highlighted"),i)t.removeClass("sm-nowrap").css({zIndex:"",width:"auto",minWidth:"",maxWidth:"",top:"",left:"",marginLeft:"",marginTop:""});else{if(t.css("z-index",this.zIndexInc=(this.zIndexInc||this.getStartZIndex())+1),(this.opts.subMenusMinWidth||this.opts.subMenusMaxWidth)&&(t.css({width:"auto",minWidth:"",maxWidth:""}).addClass("sm-nowrap"),this.opts.subMenusMinWidth&&t.css("min-width",this.opts.subMenusMinWidth),this.opts.subMenusMaxWidth)){var s=this.getWidth(t);t.css("max-width",this.opts.subMenusMaxWidth),s>this.getWidth(t)&&t.removeClass("sm-nowrap").css("width",this.opts.subMenusMaxWidth)}this.menuPosition(t)}var o=function(){t.css("overflow","")};i?canAnimate&&this.opts.collapsibleShowFunction?this.opts.collapsibleShowFunction.call(this,t,o):t.show(this.opts.collapsibleShowDuration,o):canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,t,o):t.show(this.opts.showDuration,o),e.attr("aria-expanded","true"),t.attr({"aria-expanded":"true","aria-hidden":"false"}),this.visibleSubMenus.push(t),this.$root.triggerHandler("show.smapi",t[0])}},popupHide:function(t){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},t?1:this.opts.hideTimeout)},popupShow:function(t,e){if(!this.opts.isPopup)return alert('SmartMenus jQuery Error:\n\nIf you want to show this menu via the "popupShow" method, set the isPopup:true option.'),void 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\ No newline at end of file
diff --git a/html/lgrid_sec.html b/html/lgrid_sec.html
deleted file mode 100644
index 9a08228..0000000
--- a/html/lgrid_sec.html
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-<div class="title">Limiter Gird File </div>  </div>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#lgrid_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#lgrid_input_sec">Input Configuation</a><ul><li class="level2"><a href="#lgrid_input_keyword_sec">Keywords</a></li>
-<li class="level2"><a href="#lgrid_input_exam_sec">Example File</a></li>
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-<li class="level1"><a href="#lgrid_command_line_sec">Command Line Arguments</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="lgrid_intro_sec"></a>
-Introduction</h1>
-<p>LGRID is a code to precompute the distance from a grid point to the closest point on a limiter. Limiters are specified as a series of line segments in a counter clockwise fasion. That is a polygon with vertices ordered in a counter clockwise will have the inside of the polygon represent the interior. Clockwise ordering will have the outside of the polygon represent the interior.</p>
-<h1><a class="anchor" id="lgrid_input_sec"></a>
-Input Configuation</h1>
-<p>All limiters are defined using the same format. A key word, the number of phi planes the limiter surface is associated with, a list of phi values and then a list of r z segment positions terminated by a <code>end_limiter</code> keyword.</p>
-<p><code>keyword<br  />
-</code> <code>num_phi<br  />
-</code> <code>phi1(REAL) phi2(REAL) ... phiN(REAL)<br  />
-</code> <code>r1(REAL) z1(REAL)<br  />
-</code> <code>r2(REAL) z2(REAL)<br  />
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-</code> <code>rM(REAL) zM(REAL)<br  />
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-<td width="30%"><code>new_limiter_deg</code></td><td width="70%">A limiter at phi angles specified in degrees. </td></tr>
-<tr>
-<td width="30%"><code>new_limiter_rad</code></td><td width="70%">A limiter at phi angles specified in radians. </td></tr>
-<tr>
-<td width="30%"><code>end_limiter</code></td><td width="70%">End of the limiter. </td></tr>
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-<h2><a class="anchor" id="lgrid_input_exam_sec"></a>
-Example File</h2>
-<div class="fragment"><div class="line"><a class="code" href="main_8cpp.html#af3754bbe3139e87ca36a767358686e67">new_limiter_deg</a></div>
-<div class="line">3</div>
-<div class="line">10.0 50.0 175.0</div>
-<div class="line">0.5 -0.25</div>
-<div class="line">1.0 -0.25</div>
-<div class="line">1.0  0.25</div>
-<div class="line">0.5  0.25</div>
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-</div><!-- fragment --><h1><a class="anchor" id="lgrid_command_line_sec"></a>
-Command Line Arguments</h1>
-<p>LGRID is run with the following command.</p>
-<p><code>lgrid filename r0 dr numr z0 dz numz</code></p>
-<table border="1px" width="80%">
-<tr>
-<td width="30%"><code>filename</code></td><td width="70%">Path to file containing the limiter configuation. </td></tr>
-<tr>
-<td width="30%"><code>r0</code></td><td width="70%">Starting radial grid position. </td></tr>
-<tr>
-<td width="30%"><code>dr</code></td><td width="70%">Radial grid width. </td></tr>
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-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacelimiter.html">limiter</a>.  
-<a href="#details">More...</a></p>
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-<tr class="memdesc:aa44dc38dfbefb7c21d280e0ec4ed74ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> object.  <a href="namespacelimiter.html#aa44dc38dfbefb7c21d280e0ec4ed74ff">More...</a><br /></td></tr>
-<tr class="separator:aa44dc38dfbefb7c21d280e0ec4ed74ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45aa0ac5949f3a566bad8db3bb191df1"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a45aa0ac5949f3a566bad8db3bb191df1">limiter::limiter_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
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-<tr class="separator:a45aa0ac5949f3a566bad8db3bb191df1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a8e32e4e8c7d4729044dad84771320a39"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the limiter type.  <a href="namespacelimiter.html#a8e32e4e8c7d4729044dad84771320a39">More...</a><br /></td></tr>
-<tr class="separator:a8e32e4e8c7d4729044dad84771320a39"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b1f11eb0fd97b734d63364f9a61a102"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102">limiter::limiter_get_header</a> (this, header)</td></tr>
-<tr class="memdesc:a3b1f11eb0fd97b734d63364f9a61a102"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102">More...</a><br /></td></tr>
-<tr class="separator:a3b1f11eb0fd97b734d63364f9a61a102"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61ed94cda09b81ca3d693d0b8a340310"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a61ed94cda09b81ca3d693d0b8a340310">limiter::limiter_get_max_fval</a> (this, num_theta, phi_index, r, z, rphiz_at_max)</td></tr>
-<tr class="memdesc:a61ed94cda09b81ca3d693d0b8a340310"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the maximum value of the limiter function.  <a href="namespacelimiter.html#a61ed94cda09b81ca3d693d0b8a340310">More...</a><br /></td></tr>
-<tr class="separator:a61ed94cda09b81ca3d693d0b8a340310"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacelimiter.html">limiter</a>. </p>
-</div></div><!-- contents -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-
-<p>Contains module <a class="el" href="namespacelimiter.html">limiter</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a limiter signal.  <a href="structlimiter__grid_1_1limiter__grid__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1fe0dca7e422c5a64aa5e535fd0f845c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9e2650f5959b58e6feb3e0c324969aea"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae33cdb159cc818d474e966f2a6e685c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespacelimiter.html">limiter</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/limiter__iso__T_8f.html b/html/limiter__iso__T_8f.html
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-
-<p>Contains module limiter_iso_T.  
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-<tr class="separator:ae93df12beb723f9884e18937f4312dab"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ac3948b7d4d4f033c6f09f60150ed0726"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a limiter_iso object.  <a href="namespacelimiter__iso__t.html#ac3948b7d4d4f033c6f09f60150ed0726">More...</a><br /></td></tr>
-<tr class="separator:ac3948b7d4d4f033c6f09f60150ed0726"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a0b757e7a9b05ec278334560651aecf13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the maximum value of the iso function.  <a href="namespacelimiter__iso__t.html#a0b757e7a9b05ec278334560651aecf13">More...</a><br /></td></tr>
-<tr class="separator:a0b757e7a9b05ec278334560651aecf13"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a267ecdcac3da0fe68e4d02bb4587c5e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a74d3b2f52f4049c50a9cf8939aa6cacf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the limiter iso type.  <a href="namespacelimiter__iso__t.html#a74d3b2f52f4049c50a9cf8939aa6cacf">More...</a><br /></td></tr>
-<tr class="separator:a74d3b2f52f4049c50a9cf8939aa6cacf"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module limiter_iso_T. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/line__segment_8f.html b/html/line__segment_8f.html
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-<div class="contents">
-
-<p>Contains module <a class="el" href="namespaceline__segment.html">line_segment</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="separator:aa63bfde0ff39e19622f7f5fe150e8b59"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a5686dda904eede25b04410ebada585d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceline__segment.html">line_segment</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<tr class="separator:a1f0d1596b2e0e5e2f7b0cf38cd6b8542"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#abe1c16a75fd75d819b1389704cc0a406">magnetic::magnetic_3d_flag</a> = 2</td></tr>
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-<p>Contains module <a class="el" href="namespacemagnetic__response.html">magnetic_response</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html">magnetic_response::magnetic_response_construct</a></td></tr>
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-<tr class="memdesc:ac682e9802057231ed94d61dad4d3f4fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.  <a href="namespacemagnetic__response.html#ac682e9802057231ed94d61dad4d3f4fe">More...</a><br /></td></tr>
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-<tr class="separator:a0a6faca573822aa7a36c85d67436bb20"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a093388178841979640266142545c52ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a618b82f71541810b185f0b2eea7cd63a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the conducting shell flag is set.  <a href="namespacemagnetic__response.html#a618b82f71541810b185f0b2eea7cd63a">More...</a><br /></td></tr>
-<tr class="separator:a618b82f71541810b185f0b2eea7cd63a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aaeb6da528af6df184173324b8b1c33ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2fb61c92491193e14b707f8e3ae02790"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ab440979ffdd567a11312502214d8953f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a19a9c4e03d34dd6cd6a3e7677b43c86c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version for the MDSIG files. This version adds the conducting shell.  <a href="namespacemagnetic__response.html#a19a9c4e03d34dd6cd6a3e7677b43c86c">More...</a><br /></td></tr>
-<tr class="separator:a19a9c4e03d34dd6cd6a3e7677b43c86c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a10943ec3427fe606cf61e09ad709aaf9"><td class="memItemLeft" align="right" valign="top"><a id="a10943ec3427fe606cf61e09ad709aaf9"></a>
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-<tr class="memdesc:a10943ec3427fe606cf61e09ad709aaf9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Length for strings. <br /></td></tr>
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-<tr class="memdesc:a72e86e40fced0ed47954541307e4a4a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use coil response flag. <br /></td></tr>
-<tr class="separator:a72e86e40fced0ed47954541307e4a4a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a431c04b753028230aa2aee51de6f7c87"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the force coil response flag. <br /></td></tr>
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-<tr class="memdesc:a8808835831253f96bffea0f6ffe605a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the stellerator symmetry flag. <br /></td></tr>
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-<tr class="memdesc:ade73142d3199ee5c7e944e4bed988ea3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use conducting shell flag. <br /></td></tr>
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-<tr class="memitem:aee85d86f3ec99cc3e28bad6f24d6683b"><td class="memItemLeft" align="right" valign="top"><a id="aee85d86f3ec99cc3e28bad6f24d6683b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#aee85d86f3ec99cc3e28bad6f24d6683b">magnetic_response::magnetic_response_is_point_flag</a> = 5</td></tr>
-<tr class="memdesc:aee85d86f3ec99cc3e28bad6f24d6683b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use conducting shell flag. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a377635cff73471fb51264334a3c5446b">magnetic_response::nc_flags</a> = 'mddc_mrf_flags'</td></tr>
-<tr class="memdesc:a377635cff73471fb51264334a3c5446b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF configureation flags. <br /></td></tr>
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-<tr class="memitem:a661f8c1a5a744a0f7e0a5cabe158c08d"><td class="memItemLeft" align="right" valign="top"><a id="a661f8c1a5a744a0f7e0a5cabe158c08d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a661f8c1a5a744a0f7e0a5cabe158c08d">magnetic_response::nc_name</a> = 'mddc_mrf_code_name'</td></tr>
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-<tr class="memitem:a671670c1c3a8cf7df312bfca840cb679"><td class="memItemLeft" align="right" valign="top"><a id="a671670c1c3a8cf7df312bfca840cb679"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a671670c1c3a8cf7df312bfca840cb679">magnetic_response::nc_version</a> = 'mddc_mrf_code_version'</td></tr>
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-<tr class="memitem:a08a0a129f29167104d40cb25e2ce2d3f"><td class="memItemLeft" align="right" valign="top"><a id="a08a0a129f29167104d40cb25e2ce2d3f"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a08a0a129f29167104d40cb25e2ce2d3f">magnetic_response::nc_date</a> = 'mddc_mrf_date_run'</td></tr>
-<tr class="memdesc:a08a0a129f29167104d40cb25e2ce2d3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF date run variable. <br /></td></tr>
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-<tr class="memitem:ae4bcf102a02e80af6cfcb3c86b01b1fb"><td class="memItemLeft" align="right" valign="top"><a id="ae4bcf102a02e80af6cfcb3c86b01b1fb"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ae4bcf102a02e80af6cfcb3c86b01b1fb">magnetic_response::nc_coil_id</a> = 'mddc_mrf_field_coils_id'</td></tr>
-<tr class="memdesc:ae4bcf102a02e80af6cfcb3c86b01b1fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF coil identifier variable. <br /></td></tr>
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-<tr class="memitem:aee0890ad647c2237e011b8834f0843d5"><td class="memItemLeft" align="right" valign="top"><a id="aee0890ad647c2237e011b8834f0843d5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#aee0890ad647c2237e011b8834f0843d5">magnetic_response::nc_n_field_cg</a> = 'mddc_mrf_n_field_cg'</td></tr>
-<tr class="memdesc:aee0890ad647c2237e011b8834f0843d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number of field coils variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a03cc304eecb2b8be6aabb511dc673980">magnetic_response::nc_inductance</a> = 'mddc_mrf_rdiag_coilg_1'</td></tr>
-<tr class="memdesc:a03cc304eecb2b8be6aabb511dc673980"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF mutual inductance variable. <br /></td></tr>
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-<tr class="memitem:ae4f38b668b2271f8bf2750d96c4f6047"><td class="memItemLeft" align="right" valign="top"><a id="ae4f38b668b2271f8bf2750d96c4f6047"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ae4f38b668b2271f8bf2750d96c4f6047">magnetic_response::nc_current_scale</a> = 'mddc_mrf_extcur_mg'</td></tr>
-<tr class="memdesc:ae4f38b668b2271f8bf2750d96c4f6047"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF current scale variable. <br /></td></tr>
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-<tr class="memitem:a9d9c5d66cc5e453fad8bc47748e8a21c"><td class="memItemLeft" align="right" valign="top"><a id="a9d9c5d66cc5e453fad8bc47748e8a21c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a9d9c5d66cc5e453fad8bc47748e8a21c">magnetic_response::nc_num_t</a> = 'mddc_mrf_kp'</td></tr>
-<tr class="memdesc:a9d9c5d66cc5e453fad8bc47748e8a21c"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number torodial planes variable. <br /></td></tr>
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-<tr class="memitem:afc4a7effc7a36290e1bc02f6b4ccaa19"><td class="memItemLeft" align="right" valign="top"><a id="afc4a7effc7a36290e1bc02f6b4ccaa19"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afc4a7effc7a36290e1bc02f6b4ccaa19">magnetic_response::nc_num_r</a> = 'mddc_mrf_ir'</td></tr>
-<tr class="memdesc:afc4a7effc7a36290e1bc02f6b4ccaa19"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number radial grid points variable. <br /></td></tr>
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-<tr class="memitem:a2d943c18a4e46759fd54bcfb16facc91"><td class="memItemLeft" align="right" valign="top"><a id="a2d943c18a4e46759fd54bcfb16facc91"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a2d943c18a4e46759fd54bcfb16facc91">magnetic_response::nc_num_z</a> = 'mddc_mrf_jz'</td></tr>
-<tr class="memdesc:a2d943c18a4e46759fd54bcfb16facc91"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number vertical grid points variable. <br /></td></tr>
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-<tr class="memitem:a6151973de2478d2eb30efca1111a5658"><td class="memItemLeft" align="right" valign="top"><a id="a6151973de2478d2eb30efca1111a5658"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a6151973de2478d2eb30efca1111a5658">magnetic_response::nc_rmin</a> = 'mddc_mrf_rmin'</td></tr>
-<tr class="memdesc:a6151973de2478d2eb30efca1111a5658"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF minimum radial grid variable. <br /></td></tr>
-<tr class="separator:a6151973de2478d2eb30efca1111a5658"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d966ea9fc3a0501f9e84bdb44779896"><td class="memItemLeft" align="right" valign="top"><a id="a6d966ea9fc3a0501f9e84bdb44779896"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a6d966ea9fc3a0501f9e84bdb44779896">magnetic_response::nc_rmax</a> = 'mddc_mrf_rmax'</td></tr>
-<tr class="memdesc:a6d966ea9fc3a0501f9e84bdb44779896"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF maximum radial grid variable. <br /></td></tr>
-<tr class="separator:a6d966ea9fc3a0501f9e84bdb44779896"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad350254e3e5d6ad2dbf2c3b1cb54293e"><td class="memItemLeft" align="right" valign="top"><a id="ad350254e3e5d6ad2dbf2c3b1cb54293e"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ad350254e3e5d6ad2dbf2c3b1cb54293e">magnetic_response::nc_zmin</a> = 'mddc_mrf_zmin'</td></tr>
-<tr class="memdesc:ad350254e3e5d6ad2dbf2c3b1cb54293e"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF minimum vertical grid variable. <br /></td></tr>
-<tr class="separator:ad350254e3e5d6ad2dbf2c3b1cb54293e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8c097bff7e13a5b42a56f8866510d9f0"><td class="memItemLeft" align="right" valign="top"><a id="a8c097bff7e13a5b42a56f8866510d9f0"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8c097bff7e13a5b42a56f8866510d9f0">magnetic_response::nc_zmax</a> = 'mddc_mrf_zmax'</td></tr>
-<tr class="memdesc:a8c097bff7e13a5b42a56f8866510d9f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF maximum vertical grid variable. <br /></td></tr>
-<tr class="separator:a8c097bff7e13a5b42a56f8866510d9f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a348654f29ff0cdc89862982a0cc47059"><td class="memItemLeft" align="right" valign="top"><a id="a348654f29ff0cdc89862982a0cc47059"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a348654f29ff0cdc89862982a0cc47059">magnetic_response::nc_n_field_periods</a> = 'mddc_mrf_n_field_periods'</td></tr>
-<tr class="memdesc:a348654f29ff0cdc89862982a0cc47059"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number of field periods variable. <br /></td></tr>
-<tr class="separator:a348654f29ff0cdc89862982a0cc47059"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a802b95c014d5b7807d5c855f23650a47"><td class="memItemLeft" align="right" valign="top">character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a802b95c014d5b7807d5c855f23650a47">magnetic_response::nc_stell_sym</a> = 'mddc_mrf_lstell_sym'</td></tr>
-<tr class="memdesc:a802b95c014d5b7807d5c855f23650a47"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF stell symmetric variable.  <a href="namespacemagnetic__response.html#a802b95c014d5b7807d5c855f23650a47">More...</a><br /></td></tr>
-<tr class="separator:a802b95c014d5b7807d5c855f23650a47"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac90967bd2193a946f1ac2b5cae5b7075"><td class="memItemLeft" align="right" valign="top"><a id="ac90967bd2193a946f1ac2b5cae5b7075"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ac90967bd2193a946f1ac2b5cae5b7075">magnetic_response::nc_a_r</a> = 'mddc_mrf_a_r'</td></tr>
-<tr class="memdesc:ac90967bd2193a946f1ac2b5cae5b7075"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF radial response grid variable. <br /></td></tr>
-<tr class="separator:ac90967bd2193a946f1ac2b5cae5b7075"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8219ecf05d9cfda7380dbe44f011c32b"><td class="memItemLeft" align="right" valign="top"><a id="a8219ecf05d9cfda7380dbe44f011c32b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8219ecf05d9cfda7380dbe44f011c32b">magnetic_response::nc_a_f</a> = 'mddc_mrf_a_f'</td></tr>
-<tr class="memdesc:a8219ecf05d9cfda7380dbe44f011c32b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF toroidal response grid variable. <br /></td></tr>
-<tr class="separator:a8219ecf05d9cfda7380dbe44f011c32b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a50a3044f18314c3c20f47336d4772187"><td class="memItemLeft" align="right" valign="top"><a id="a50a3044f18314c3c20f47336d4772187"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a50a3044f18314c3c20f47336d4772187">magnetic_response::nc_a_z</a> = 'mddc_mrf_a_z'</td></tr>
-<tr class="memdesc:a50a3044f18314c3c20f47336d4772187"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF vertical response grid variable. <br /></td></tr>
-<tr class="separator:a50a3044f18314c3c20f47336d4772187"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8293da9b59bf6661dcc63c58c87c856f"><td class="memItemLeft" align="right" valign="top">character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8293da9b59bf6661dcc63c58c87c856f">magnetic_response::nc_use_shell</a> = 'mddc_mrf_use_con_shell'</td></tr>
-<tr class="memdesc:a8293da9b59bf6661dcc63c58c87c856f"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF use conducting shell variable.  <a href="namespacemagnetic__response.html#a8293da9b59bf6661dcc63c58c87c856f">More...</a><br /></td></tr>
-<tr class="separator:a8293da9b59bf6661dcc63c58c87c856f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd827d914cd8638102a2add1326ce0b3"><td class="memItemLeft" align="right" valign="top"><a id="afd827d914cd8638102a2add1326ce0b3"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afd827d914cd8638102a2add1326ce0b3">magnetic_response::nc_num_t_shell</a> = 'mddc_mrf_kp_shell'</td></tr>
-<tr class="memdesc:afd827d914cd8638102a2add1326ce0b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number torodial shell grid points variable. <br /></td></tr>
-<tr class="separator:afd827d914cd8638102a2add1326ce0b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac33927f664904642f1e8c8b84233a810"><td class="memItemLeft" align="right" valign="top"><a id="ac33927f664904642f1e8c8b84233a810"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ac33927f664904642f1e8c8b84233a810">magnetic_response::nc_a_s_r</a> = 'mddc_mrf_a_s_r'</td></tr>
-<tr class="memdesc:ac33927f664904642f1e8c8b84233a810"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF radial response shell grid variable. <br /></td></tr>
-<tr class="separator:ac33927f664904642f1e8c8b84233a810"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59966b46243e040479adcd0fc9eb96bc"><td class="memItemLeft" align="right" valign="top"><a id="a59966b46243e040479adcd0fc9eb96bc"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a59966b46243e040479adcd0fc9eb96bc">magnetic_response::nc_a_s_f</a> = 'mddc_mrf_a_s_f'</td></tr>
-<tr class="memdesc:a59966b46243e040479adcd0fc9eb96bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF toroidal response shell grid variable. <br /></td></tr>
-<tr class="separator:a59966b46243e040479adcd0fc9eb96bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="memItemLeft" align="right" valign="top"><a id="afb7952ef4266fbdb5fbe6a33a3fdc41a"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afb7952ef4266fbdb5fbe6a33a3fdc41a">magnetic_response::nc_a_s_z</a> = 'mddc_mrf_a_s_z'</td></tr>
-<tr class="memdesc:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF vertical response shell grid variable. <br /></td></tr>
-<tr class="separator:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63a526966fa0ad3e92f21ce83c00178b"><td class="memItemLeft" align="right" valign="top"><a id="a63a526966fa0ad3e92f21ce83c00178b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a63a526966fa0ad3e92f21ce83c00178b">magnetic_response::nc_position</a> = 'mddc_mrf_position'</td></tr>
-<tr class="memdesc:a63a526966fa0ad3e92f21ce83c00178b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF use conducting shell variable. <br /></td></tr>
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-<p>Contains the main rotutines for LGRID.  
-<a href="#details">More...</a></p>
-<div class="textblock"><code>#include &lt;algorithm&gt;</code><br />
-<code>#include &lt;array&gt;</code><br />
-<code>#include &lt;cmath&gt;</code><br />
-<code>#include &lt;fstream&gt;</code><br />
-<code>#include &lt;iostream&gt;</code><br />
-<code>#include &lt;map&gt;</code><br />
-<code>#include &lt;netcdf.h&gt;</code><br />
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-<tr class="memitem:a70a4e837205a18c7a25bd982b0192848"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="main_8cpp.html#a70a4e837205a18c7a25bd982b0192848">limiter_type</a> { <b>degrees</b>
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-<tr class="separator:a2152c729889bdc6152cb1474257c65dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6db4d99fcdfdf582802325d346ea43f4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="main_8cpp.html#a6db4d99fcdfdf582802325d346ea43f4">parse_limiter</a> (std::ifstream &amp;file, std::map&lt; const double, std::vector&lt; <a class="el" href="classvertex.html">vertex</a> * &gt; &gt; &amp;limiters, const <a class="el" href="main_8cpp.html#a70a4e837205a18c7a25bd982b0192848">limiter_type</a> type)</td></tr>
-<tr class="memdesc:a6db4d99fcdfdf582802325d346ea43f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a limiter specification.  <a href="main_8cpp.html#a6db4d99fcdfdf582802325d346ea43f4">More...</a><br /></td></tr>
-<tr class="separator:a6db4d99fcdfdf582802325d346ea43f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab59ef216cc531f1f8d11fb61b0a30c49"><td class="memItemLeft" align="right" valign="top">std::map&lt; const double, std::vector&lt; <a class="el" href="classvertex.html">vertex</a> * &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="main_8cpp.html#ab59ef216cc531f1f8d11fb61b0a30c49">parse_limiter_file</a> (const std::string &amp;file_name)</td></tr>
-<tr class="memdesc:ab59ef216cc531f1f8d11fb61b0a30c49"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a limiter specification.  <a href="main_8cpp.html#ab59ef216cc531f1f8d11fb61b0a30c49">More...</a><br /></td></tr>
-<tr class="separator:ab59ef216cc531f1f8d11fb61b0a30c49"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0f2228420376f4db7e1274f2b41667c"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="main_8cpp.html#ac0f2228420376f4db7e1274f2b41667c">main</a> (int argc, const char *argv[])</td></tr>
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-<tr class="separator:ac0f2228420376f4db7e1274f2b41667c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="memitem:af3754bbe3139e87ca36a767358686e67"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="main_8cpp.html#af3754bbe3139e87ca36a767358686e67">new_limiter_deg</a> = &quot;new_limiter_deg&quot;</td></tr>
-<tr class="memdesc:af3754bbe3139e87ca36a767358686e67"><td class="mdescLeft">&#160;</td><td class="mdescRight">Limiter plane keyword specified in degrees.  <a href="main_8cpp.html#af3754bbe3139e87ca36a767358686e67">More...</a><br /></td></tr>
-<tr class="separator:af3754bbe3139e87ca36a767358686e67"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a421ab65ef9b71171d848eed5609f16d4"><td class="memItemLeft" align="right" valign="top"><a id="a421ab65ef9b71171d848eed5609f16d4"></a>
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-<tr class="memdesc:a421ab65ef9b71171d848eed5609f16d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Limiter plane keyword specified in radians. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains the main rotutines for LGRID. </p>
-</div><h2 class="groupheader">Enumeration Type Documentation</h2>
-<a id="a70a4e837205a18c7a25bd982b0192848"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a70a4e837205a18c7a25bd982b0192848">&#9670;&nbsp;</a></span>limiter_type</h2>
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-<p>Keyword token types.</p><ul>
-<li>degrees Limiter defined in degrees.</li>
-<li>radians Limiter defined in radians.</li>
-<li>eof End of file reached. </li>
-</ul>
-
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-<p>Finds the next keyword. </p>
-<p>Reads the input file one file at a time searching for the next keyword until the end of the file is reached.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">file</td><td>Input file stream to seach for next keyword. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>An <a class="el" href="main_8cpp.html#a70a4e837205a18c7a25bd982b0192848">limiter_type</a> token. </dd></dl>
-
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-<h2 class="memtitle"><span class="permalink"><a href="#ac0f2228420376f4db7e1274f2b41667c">&#9670;&nbsp;</a></span>main()</h2>
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-          <td class="memname">int main </td>
-          <td>(</td>
-          <td class="paramtype">int&#160;</td>
-          <td class="paramname"><em>argc</em>, </td>
-        </tr>
-        <tr>
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-<p>Main program. </p>
-<p>Parses the limter file. Computes distances to the nearest limiter element. Creates the lgrid netcdf file. This program expects 7 arguments in the following order.</p>
-<ul>
-<li>Filename to parse define the limiter.</li>
-<li>Starting radial position to define the radial grid.</li>
-<li>Radial grid spacing.</li>
-<li>Number of radial grid points.</li>
-<li>Starting vertical position to define the vertical grid.</li>
-<li>Vertical grid spacing.</li>
-<li>Number of vertical grid points.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">argc</td><td>Number of command line arguments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">argv</td><td>Arrays of argument strings. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>0 if completed. </dd></dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a6db4d99fcdfdf582802325d346ea43f4">&#9670;&nbsp;</a></span>parse_limiter()</h2>
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-<p>Parses a limiter specification. </p>
-<p>Limiters are defined by the number of phi planes this plasma facing component is asscoiated with. This is followed by a list of each phi. A collection of R, Z values defing the crossection is read until two doubles could not be read or the file ends.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in,out]</td><td class="paramname">limiters</td><td>Limiter vertex data. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">type</td><td>Limiter type. </td></tr>
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-<p>Parses a limiter specification. </p>
-<p>Opens a file, loops through all the keywords and parses the limiter file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_name</td><td>Limiter type. </td></tr>
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-
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-<h2 class="groupheader">Variable Documentation</h2>
-<a id="af3754bbe3139e87ca36a767358686e67"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af3754bbe3139e87ca36a767358686e67">&#9670;&nbsp;</a></span>new_limiter_deg</h2>
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-
-<p>Limiter plane keyword specified in degrees. </p>
-<dl class="section author"><dt>Author</dt><dd>Mark Cianciosa on 10/12/15.</dd></dl>
-<p>LGRID is code for generating responce files for any arbitary shaped limiter structure. This creates a grid a distances to the nearest plasma facing component in a specified phi plane. </p>
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-</div><!-- top -->
-<div class="PageDoc"><div class="header">
-  <div class="headertitle">
-<div class="title">Stellarator-Tools </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="textblock"><p>This is an umbrella project for the stellarator community tools. Currently available subprojects are.</p>
-<ul>
-<li><a href="https://github.com/ORNL-Fusion/LIBSTELL">LIBSTELL</a> Base library for tools.</li>
-<li><a href="https://github.com/ORNL-Fusion/MAKEGRID">MAKEGRID</a> Generate vacuum fields from coil models.</li>
-<li><a href="https://github.com/ORNL-Fusion/PARVMEC">VMEC</a> 3D Equilibrium solver with nested flux surfaces.</li>
-<li><a href="https://github.com/ORNL-Fusion/DESCUR">DESCUR</a> Spectrally condensed curve fitting with Fourier series.</li>
-<li><a href="https://github.com/ORNL-Fusion/BMW">BMW</a> Bio-savart Magnetic VMEC Vector potential.</li>
-<li><a href="https://github.com/ORNL-Fusion/SURFACE">SURFACE</a> Compute vector potential at firstwall surfaces.</li>
-<li><a href="https://github.com/ORNL-Fusion/LGRID">LGRID</a> Limiter grid preprocessor.</li>
-<li><a href="https://github.com/ORNL-Fusion/SIESTA">SIESTA</a> 3D Equilibrium solver with islands.</li>
-<li><a href="https://github.com/ORNL-Fusion/V3RFUN">V3RFUN</a> Magnetic diagnostic responce functions.</li>
-<li><a href="https://github.com/cianciosa/V3FIT">V3FIT</a> 3D Equilibrium Reconstruction</li>
-<li><a href="https://github.com/ORNL-Fusion/BOOZ_XFORM.git">BOOZ_XFORM</a> Convert VMEC coordinates to Boozer coordinates.</li>
-</ul>
-<h1><a class="anchor" id="autotoc_md7"></a>
-Documentation</h1>
-<ul>
-<li><a href="https://github.com/jonathanschilling/vmec-internals">VMEC-internals</a> Some VMEC-internal documentation</li>
-</ul>
-<h1><a class="anchor" id="autotoc_md8"></a>
-Testing</h1>
-<p><a href="https://github.com/ORNL-Fusion/Stellarator-Tools/actions/workflows/ci_test.yaml"><img src="https://github.com/ORNL-Fusion/Stellarator-Tools/actions/workflows/ci_test.yaml/badge.svg" alt="Continuous Integration Test" style="pointer-events: none;" class="inline"/></a></p>
-<h1><a class="anchor" id="autotoc_md9"></a>
-Compiling</h1>
-<p>To compile the code, first clone this repository.</p>
-<div class="fragment"><div class="line">git clone https://github.com/ORNL-Fusion/Stellarator-Tools.git</div>
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-<div class="line">mkdir build</div>
-<div class="line">cd build</div>
-</div><!-- fragment --><p>It's recommended that you use the <code>ccmake</code> to configure the build system. From inside the build directory, run the <code>ccmake</code> command</p>
-<div class="fragment"><div class="line">ccmake ../</div>
-</div><!-- fragment --><p>Initally, there will be no options.</p>
-<p><img src="cmake1.png" alt="" class="inline" title="Inital Screen"/></p>
-<p>press the <code>c</code> key to configure. Once configured, there will be several options. Different codes in the Stellarator Tools suite of codes can be configured to be built by toggling the <code>BUILD_&lt;CODE&gt;</code> from <code>off</code> to <code>on</code>. The build system will automatically turn on any dependencies. You can also set new options like the <code>CMAKE_BUILD_TYPE</code>.</p>
-<p><img src="cmake2.png" alt="" class="inline" title="Inital Screen"/></p>
-<p>After changing settings, keep pressing <code>c</code> until the <code>g</code> option appears.</p>
-<p><img src="cmake3.png" alt="" class="inline" title="Inital Screen"/></p>
-<p>After hitting <code>g</code> option <code>ccmake</code> will exit and a <code>Makefile</code> will be generated. The codes can be built using the <code>make</code> command.</p>
-<h2><a class="anchor" id="autotoc_md10"></a>
-Touble Shooting</h2>
-<p>If <code>cmake</code> fails to find the correct libraries, you may need to set the <code>CMAKE_PREFIX_PATH</code> variable to help locate them. </p>
-</div></div><!-- contents -->
-</div><!-- PageDoc -->
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-<p>Contains module <a class="el" href="namespacemodel.html">model</a>.  
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-<tr class="memdesc:aba4858fbaa5f5546819d80132d41c204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> containing an <a class="el" href="namespaceequilibrium.html">equilibrium</a> object.  <a href="namespacemodel.html#aba4858fbaa5f5546819d80132d41c204">More...</a><br /></td></tr>
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-<tr class="separator:a2a265c388bc36a30cc61a1635f9353d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a5b5f5493e6eaa17053a53bdfb6efcfdb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a8740a84b3eca0851c05d4727043bdd3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae48bf1f364a222eee5f9636329693c9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0410fe025b7317ff0256580b6fdc8e4a"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0410fe025b7317ff0256580b6fdc8e4a">model::model_get_param_id</a> (this, param_name)</td></tr>
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-<tr class="separator:a0410fe025b7317ff0256580b6fdc8e4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1505f0e988ed7337652bf62874052820"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3ca24f831d2002ee26314de823344ef6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:acd168d6dda98d564e8e7bf48f96ddd57"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespacemodel.html#acd168d6dda98d564e8e7bf48f96ddd57">More...</a><br /></td></tr>
-<tr class="separator:acd168d6dda98d564e8e7bf48f96ddd57"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a68ba795287919ecfea50079142f554aa"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a68ba795287919ecfea50079142f554aa">model::model_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:a68ba795287919ecfea50079142f554aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density profile af array.  <a href="namespacemodel.html#a68ba795287919ecfea50079142f554aa">More...</a><br /></td></tr>
-<tr class="separator:a68ba795287919ecfea50079142f554aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ae9f5014e55090d54e89563d33a415813"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespacemodel.html#ae9f5014e55090d54e89563d33a415813">More...</a><br /></td></tr>
-<tr class="separator:ae9f5014e55090d54e89563d33a415813"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a322214757aa18279bce1c072d523b563"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a322214757aa18279bce1c072d523b563">model::model_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a322214757aa18279bce1c072d523b563"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacemodel.html#a322214757aa18279bce1c072d523b563">More...</a><br /></td></tr>
-<tr class="separator:a322214757aa18279bce1c072d523b563"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a83e3312f26b3c4370474d176aec26a24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacemodel.html#a83e3312f26b3c4370474d176aec26a24">More...</a><br /></td></tr>
-<tr class="separator:a83e3312f26b3c4370474d176aec26a24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1be0e1afe0b9d73209fccaced1cb0436"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a1be0e1afe0b9d73209fccaced1cb0436">model::model_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a1be0e1afe0b9d73209fccaced1cb0436"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacemodel.html#a1be0e1afe0b9d73209fccaced1cb0436">More...</a><br /></td></tr>
-<tr class="separator:a1be0e1afe0b9d73209fccaced1cb0436"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38b9f520587c2be4b1cef145bba73e63"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a38b9f520587c2be4b1cef145bba73e63">model::model_get_ne_radial</a> (this, s)</td></tr>
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-<tr class="separator:a38b9f520587c2be4b1cef145bba73e63"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a62057acc8ea46a668223007226002f67"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespacemodel.html#a62057acc8ea46a668223007226002f67">More...</a><br /></td></tr>
-<tr class="separator:a62057acc8ea46a668223007226002f67"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab42eb366f86f993be7af44899cd04ef9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature profile af array.  <a href="namespacemodel.html#ab42eb366f86f993be7af44899cd04ef9">More...</a><br /></td></tr>
-<tr class="separator:ab42eb366f86f993be7af44899cd04ef9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a1a925a4cac4f8ccf8fc3ce72184ea9a6">model::model_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespacemodel.html#a1a925a4cac4f8ccf8fc3ce72184ea9a6">More...</a><br /></td></tr>
-<tr class="separator:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aad7ae3b13fa5cab9ae3ca39c616ac247">model::model_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacemodel.html#aad7ae3b13fa5cab9ae3ca39c616ac247">More...</a><br /></td></tr>
-<tr class="separator:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ac5f8281c5691b8c6fb46d239f6e5add3">model::model_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacemodel.html#ac5f8281c5691b8c6fb46d239f6e5add3">More...</a><br /></td></tr>
-<tr class="separator:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#abea4081e3dbf6e1f04898bf6a3e03f25">model::model_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacemodel.html#abea4081e3dbf6e1f04898bf6a3e03f25">More...</a><br /></td></tr>
-<tr class="separator:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a7a9bb4ec0f04d8323ba7cffd6905b4fe">model::model_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a radial position.  <a href="namespacemodel.html#a7a9bb4ec0f04d8323ba7cffd6905b4fe">More...</a><br /></td></tr>
-<tr class="separator:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aee6d3229029c80f76294f739644e94fe"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aee6d3229029c80f76294f739644e94fe">model::model_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:aee6d3229029c80f76294f739644e94fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespacemodel.html#aee6d3229029c80f76294f739644e94fe">More...</a><br /></td></tr>
-<tr class="separator:aee6d3229029c80f76294f739644e94fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0746473f984e45316fb160fd9053c457"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0746473f984e45316fb160fd9053c457">model::model_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:a0746473f984e45316fb160fd9053c457"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature profile af array.  <a href="namespacemodel.html#a0746473f984e45316fb160fd9053c457">More...</a><br /></td></tr>
-<tr class="separator:a0746473f984e45316fb160fd9053c457"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a44a83ac8ff0d2aa56bb6e0c09808ea60">model::model_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespacemodel.html#a44a83ac8ff0d2aa56bb6e0c09808ea60">More...</a><br /></td></tr>
-<tr class="separator:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af23470f0527e1e1ba842b4874b53665f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#af23470f0527e1e1ba842b4874b53665f">model::model_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:af23470f0527e1e1ba842b4874b53665f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespacemodel.html#af23470f0527e1e1ba842b4874b53665f">More...</a><br /></td></tr>
-<tr class="separator:af23470f0527e1e1ba842b4874b53665f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65bab13e633f9a0b434163439a3cbb2c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a65bab13e633f9a0b434163439a3cbb2c">model::model_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a65bab13e633f9a0b434163439a3cbb2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacemodel.html#a65bab13e633f9a0b434163439a3cbb2c">More...</a><br /></td></tr>
-<tr class="separator:a65bab13e633f9a0b434163439a3cbb2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a186a54343511101548c76a481a178354"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a186a54343511101548c76a481a178354">model::model_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a186a54343511101548c76a481a178354"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacemodel.html#a186a54343511101548c76a481a178354">More...</a><br /></td></tr>
-<tr class="separator:a186a54343511101548c76a481a178354"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a66850f85ec8926e37ed2d5919114dd03"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a66850f85ec8926e37ed2d5919114dd03">model::model_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a66850f85ec8926e37ed2d5919114dd03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a radial position.  <a href="namespacemodel.html#a66850f85ec8926e37ed2d5919114dd03">More...</a><br /></td></tr>
-<tr class="separator:a66850f85ec8926e37ed2d5919114dd03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad8cd43a44f04d67820bceeb1b6f774ed">model::model_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emission gp kernel hyper parameters.  <a href="namespacemodel.html#ad8cd43a44f04d67820bceeb1b6f774ed">More...</a><br /></td></tr>
-<tr class="separator:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a84634e1e0804a4e8d6d2b9fb8e1ccc1f">model::model_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity profile af array.  <a href="namespacemodel.html#a84634e1e0804a4e8d6d2b9fb8e1ccc1f">More...</a><br /></td></tr>
-<tr class="separator:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8b1a92b704161db3a03beeebaa6701eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a8b1a92b704161db3a03beeebaa6701eb">model::model_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:a8b1a92b704161db3a03beeebaa6701eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the two indicies.  <a href="namespacemodel.html#a8b1a92b704161db3a03beeebaa6701eb">More...</a><br /></td></tr>
-<tr class="separator:a8b1a92b704161db3a03beeebaa6701eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa19addbe2bed2a528c8b8bf222707e86"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aa19addbe2bed2a528c8b8bf222707e86">model::model_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:aa19addbe2bed2a528c8b8bf222707e86"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacemodel.html#aa19addbe2bed2a528c8b8bf222707e86">More...</a><br /></td></tr>
-<tr class="separator:aa19addbe2bed2a528c8b8bf222707e86"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab832bb930b4890f10fc77dcaba12a6e9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ab832bb930b4890f10fc77dcaba12a6e9">model::model_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:ab832bb930b4890f10fc77dcaba12a6e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacemodel.html#ab832bb930b4890f10fc77dcaba12a6e9">More...</a><br /></td></tr>
-<tr class="separator:ab832bb930b4890f10fc77dcaba12a6e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afee0b0995d6fb4b7021336d13745e512"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#afee0b0995d6fb4b7021336d13745e512">model::model_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:afee0b0995d6fb4b7021336d13745e512"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacemodel.html#afee0b0995d6fb4b7021336d13745e512">More...</a><br /></td></tr>
-<tr class="separator:afee0b0995d6fb4b7021336d13745e512"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a175159e99d72bca63093895c83a30adf"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a175159e99d72bca63093895c83a30adf">model::model_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:a175159e99d72bca63093895c83a30adf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a radial position.  <a href="namespacemodel.html#a175159e99d72bca63093895c83a30adf">More...</a><br /></td></tr>
-<tr class="separator:a175159e99d72bca63093895c83a30adf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0c13b272f321765061b7ea58d78497e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ac0c13b272f321765061b7ea58d78497e">model::model_get_sxrem_ratio</a> (this, te)</td></tr>
-<tr class="memdesc:ac0c13b272f321765061b7ea58d78497e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity ratio.  <a href="namespacemodel.html#ac0c13b272f321765061b7ea58d78497e">More...</a><br /></td></tr>
-<tr class="separator:ac0c13b272f321765061b7ea58d78497e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a95306c7639e4da0cd4073425130e06db"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a95306c7639e4da0cd4073425130e06db">model::model_get_ne_type</a> (this)</td></tr>
-<tr class="memdesc:a95306c7639e4da0cd4073425130e06db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density type as a string.  <a href="namespacemodel.html#a95306c7639e4da0cd4073425130e06db">More...</a><br /></td></tr>
-<tr class="separator:a95306c7639e4da0cd4073425130e06db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75ad061f96afc97aeb8b46b0c283036b"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a75ad061f96afc97aeb8b46b0c283036b">model::model_get_te_type</a> (this)</td></tr>
-<tr class="memdesc:a75ad061f96afc97aeb8b46b0c283036b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature type as a string.  <a href="namespacemodel.html#a75ad061f96afc97aeb8b46b0c283036b">More...</a><br /></td></tr>
-<tr class="separator:a75ad061f96afc97aeb8b46b0c283036b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73d692cfc1ac523d21357b613aaa42c0"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a73d692cfc1ac523d21357b613aaa42c0">model::model_get_ti_type</a> (this)</td></tr>
-<tr class="memdesc:a73d692cfc1ac523d21357b613aaa42c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature type as a string.  <a href="namespacemodel.html#a73d692cfc1ac523d21357b613aaa42c0">More...</a><br /></td></tr>
-<tr class="separator:a73d692cfc1ac523d21357b613aaa42c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af88bfde139873aee78ab9f9279998be4"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#af88bfde139873aee78ab9f9279998be4">model::model_get_sxrem_type</a> (this, index)</td></tr>
-<tr class="memdesc:af88bfde139873aee78ab9f9279998be4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity type as a string.  <a href="namespacemodel.html#af88bfde139873aee78ab9f9279998be4">More...</a><br /></td></tr>
-<tr class="separator:af88bfde139873aee78ab9f9279998be4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad1458152390260f06d7442de36bdbd98"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad1458152390260f06d7442de36bdbd98">model::model_get_signal_factor</a> (this, index)</td></tr>
-<tr class="memdesc:ad1458152390260f06d7442de36bdbd98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the scale factor for a signal.  <a href="namespacemodel.html#ad1458152390260f06d7442de36bdbd98">More...</a><br /></td></tr>
-<tr class="separator:ad1458152390260f06d7442de36bdbd98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a6a2f06f9f5990ecfdc9813ed5d3eba11">model::model_get_signal_offset</a> (this, index)</td></tr>
-<tr class="memdesc:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the offset factor for a signal.  <a href="namespacemodel.html#a6a2f06f9f5990ecfdc9813ed5d3eba11">More...</a><br /></td></tr>
-<tr class="separator:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae92f9c0950727e71610455ca8498fca1"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae92f9c0950727e71610455ca8498fca1">model::model_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:ae92f9c0950727e71610455ca8498fca1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines if a parameter id is a reconstruction parameter.  <a href="namespacemodel.html#ae92f9c0950727e71610455ca8498fca1">More...</a><br /></td></tr>
-<tr class="separator:ae92f9c0950727e71610455ca8498fca1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a039d5b9b4b15952e126981a5793751af"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a039d5b9b4b15952e126981a5793751af">model::model_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a039d5b9b4b15952e126981a5793751af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the model.  <a href="namespacemodel.html#a039d5b9b4b15952e126981a5793751af">More...</a><br /></td></tr>
-<tr class="separator:a039d5b9b4b15952e126981a5793751af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a48e3cd47a1f1eb36bcf5e846a9fe7c7e">model::model_save_state</a> (this)</td></tr>
-<tr class="memdesc:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the model.  <a href="namespacemodel.html#a48e3cd47a1f1eb36bcf5e846a9fe7c7e">More...</a><br /></td></tr>
-<tr class="separator:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae40d3eb6e7863b5ca97a108a8b6eec45">model::model_converge</a> (this, num_iter, iou, eq_comm, param_name)</td></tr>
-<tr class="memdesc:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the model.  <a href="namespacemodel.html#ae40d3eb6e7863b5ca97a108a8b6eec45">More...</a><br /></td></tr>
-<tr class="separator:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2055f9dc71e9969f8910a24b0c82d972"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a2055f9dc71e9969f8910a24b0c82d972">model::model_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a2055f9dc71e9969f8910a24b0c82d972"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the model to an output file.  <a href="namespacemodel.html#a2055f9dc71e9969f8910a24b0c82d972">More...</a><br /></td></tr>
-<tr class="separator:a2055f9dc71e9969f8910a24b0c82d972"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf5b18436f431c1bd3243d7e12fba98b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aaf5b18436f431c1bd3243d7e12fba98b">model::model_def_result</a> (this, result_ncid, maxnsteps_dim_id, string_len_dim_id)</td></tr>
-<tr class="memdesc:aaf5b18436f431c1bd3243d7e12fba98b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespacemodel.html#aaf5b18436f431c1bd3243d7e12fba98b">More...</a><br /></td></tr>
-<tr class="separator:aaf5b18436f431c1bd3243d7e12fba98b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a77c457d5c6988911e42b59b5995b28d5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a77c457d5c6988911e42b59b5995b28d5">model::model_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:a77c457d5c6988911e42b59b5995b28d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespacemodel.html#a77c457d5c6988911e42b59b5995b28d5">More...</a><br /></td></tr>
-<tr class="separator:a77c457d5c6988911e42b59b5995b28d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45af998614307b2cfeba0847683c5ba6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a45af998614307b2cfeba0847683c5ba6">model::model_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a45af998614307b2cfeba0847683c5ba6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespacemodel.html#a45af998614307b2cfeba0847683c5ba6">More...</a><br /></td></tr>
-<tr class="separator:a45af998614307b2cfeba0847683c5ba6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae5a83497a4f9218db4bb32a5ca7825e1">model::model_restart</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart the model.  <a href="namespacemodel.html#ae5a83497a4f9218db4bb32a5ca7825e1">More...</a><br /></td></tr>
-<tr class="separator:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63291119dd65decfd79cf350ebfea9f3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a63291119dd65decfd79cf350ebfea9f3">model::model_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a63291119dd65decfd79cf350ebfea9f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the model state to children.  <a href="namespacemodel.html#a63291119dd65decfd79cf350ebfea9f3">More...</a><br /></td></tr>
-<tr class="separator:a63291119dd65decfd79cf350ebfea9f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53ef30c317240b59f4dd0fc23378ec55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a53ef30c317240b59f4dd0fc23378ec55">model::model_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a53ef30c317240b59f4dd0fc23378ec55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child model state to the parent.  <a href="namespacemodel.html#a53ef30c317240b59f4dd0fc23378ec55">More...</a><br /></td></tr>
-<tr class="separator:a53ef30c317240b59f4dd0fc23378ec55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a27009da4938ee0706157b3bad05bbf9d"><td class="memItemLeft" align="right" valign="top"><a id="a27009da4938ee0706157b3bad05bbf9d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a27009da4938ee0706157b3bad05bbf9d">model::model_ne_unit_id</a> = 0</td></tr>
-<tr class="memdesc:a27009da4938ee0706157b3bad05bbf9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electron density units. <br /></td></tr>
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-<tr class="memitem:a5b31b2e1320a15347fcd70fefc4b4594"><td class="memItemLeft" align="right" valign="top"><a id="a5b31b2e1320a15347fcd70fefc4b4594"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a5b31b2e1320a15347fcd70fefc4b4594">model::model_ne_min_id</a> = 1</td></tr>
-<tr class="memdesc:a5b31b2e1320a15347fcd70fefc4b4594"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron density. <br /></td></tr>
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-<tr class="memitem:a219879b1157e2b3db06187739c411fc1"><td class="memItemLeft" align="right" valign="top"><a id="a219879b1157e2b3db06187739c411fc1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a219879b1157e2b3db06187739c411fc1">model::model_te_min_id</a> = 2</td></tr>
-<tr class="memdesc:a219879b1157e2b3db06187739c411fc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron temperature. <br /></td></tr>
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-<tr class="memitem:aae6c33103f73eddc33eb7ed63798d608"><td class="memItemLeft" align="right" valign="top"><a id="aae6c33103f73eddc33eb7ed63798d608"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aae6c33103f73eddc33eb7ed63798d608">model::model_ti_min_id</a> = 3</td></tr>
-<tr class="memdesc:aae6c33103f73eddc33eb7ed63798d608"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron temperature. <br /></td></tr>
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-<tr class="memitem:ad2b6317fad31953186ed8f7a7fad9303"><td class="memItemLeft" align="right" valign="top"><a id="ad2b6317fad31953186ed8f7a7fad9303"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad2b6317fad31953186ed8f7a7fad9303">model::model_pressure_fraction_id</a> = 4</td></tr>
-<tr class="memdesc:ad2b6317fad31953186ed8f7a7fad9303"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion fraction of the pressure. <br /></td></tr>
-<tr class="separator:ad2b6317fad31953186ed8f7a7fad9303"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a36e70a1922b00ed72f14ca70727782ce">model::model_sxrem_min_id</a> = 5</td></tr>
-<tr class="memdesc:a36e70a1922b00ed72f14ca70727782ce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion fraction of the pressure. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a25437a3fa32d82cbbd30726d8e8a03d7">model::model_coosig_wgts_id</a> = 6</td></tr>
-<tr class="memdesc:a25437a3fa32d82cbbd30726d8e8a03d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the combination signal weights. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0fac5822f775417cfde63cc60ba7fc95">model::model_signal_factor_id</a> = 7</td></tr>
-<tr class="memdesc:a0fac5822f775417cfde63cc60ba7fc95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the modeled signal scale factors. <br /></td></tr>
-<tr class="separator:a0fac5822f775417cfde63cc60ba7fc95"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5859376b779689c5e2bd30c6defea193"><td class="memItemLeft" align="right" valign="top"><a id="a5859376b779689c5e2bd30c6defea193"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a5859376b779689c5e2bd30c6defea193">model::model_signal_offset_id</a> = 8</td></tr>
-<tr class="memdesc:a5859376b779689c5e2bd30c6defea193"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the modeled signal offset factors. <br /></td></tr>
-<tr class="separator:a5859376b779689c5e2bd30c6defea193"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8ec59b67723de5350e1243bd13d57308"><td class="memItemLeft" align="right" valign="top"><a id="a8ec59b67723de5350e1243bd13d57308"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a8ec59b67723de5350e1243bd13d57308">model::model_ne_grid_id</a> = 9</td></tr>
-<tr class="memdesc:a8ec59b67723de5350e1243bd13d57308"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion density grid. <br /></td></tr>
-<tr class="separator:a8ec59b67723de5350e1243bd13d57308"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a252cedeee618d79814de7327ef8838d1"><td class="memItemLeft" align="right" valign="top"><a id="a252cedeee618d79814de7327ef8838d1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a252cedeee618d79814de7327ef8838d1">model::model_te_grid_id</a> = 10</td></tr>
-<tr class="memdesc:a252cedeee618d79814de7327ef8838d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion temperature grid. <br /></td></tr>
-<tr class="separator:a252cedeee618d79814de7327ef8838d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a6ad268d4278577494f334adebb6896"><td class="memItemLeft" align="right" valign="top"><a id="a7a6ad268d4278577494f334adebb6896"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a7a6ad268d4278577494f334adebb6896">model::model_ti_grid_id</a> = 11</td></tr>
-<tr class="memdesc:a7a6ad268d4278577494f334adebb6896"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the ion temperature grid. <br /></td></tr>
-<tr class="separator:a7a6ad268d4278577494f334adebb6896"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd7336c016d4b58107cc3c8cf899fea9"><td class="memItemLeft" align="right" valign="top"><a id="acd7336c016d4b58107cc3c8cf899fea9"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#acd7336c016d4b58107cc3c8cf899fea9">model::model_sxrem_grid_id</a> = 12</td></tr>
-<tr class="memdesc:acd7336c016d4b58107cc3c8cf899fea9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the soft x-ray emissivity grid. <br /></td></tr>
-<tr class="separator:acd7336c016d4b58107cc3c8cf899fea9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adee0096c51cfba8e688b2e2f073ec866"><td class="memItemLeft" align="right" valign="top"><a id="adee0096c51cfba8e688b2e2f073ec866"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#adee0096c51cfba8e688b2e2f073ec866">model::ev_per_joule</a> = one/1.602e-19_rprec</td></tr>
-<tr class="memdesc:adee0096c51cfba8e688b2e2f073ec866"><td class="mdescLeft">&#160;</td><td class="mdescRight">Conversion from Joules to eV. <br /></td></tr>
-<tr class="separator:adee0096c51cfba8e688b2e2f073ec866"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacemodel.html">model</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
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-<div class="header">
-  <div class="summary">
-<a href="#namespaces">Modules</a> &#124;
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-<div class="title">model_state.f File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacemodel__state.html">model_state</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
-Modules</h2></td></tr>
-<tr class="memitem:namespacemodel__state"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel__state.html">model_state</a></td></tr>
-<tr class="memdesc:namespacemodel__state"><td class="mdescLeft">&#160;</td><td class="mdescRight">Contains parameters defining the bit positions for flags that mark changes in different parts of the model. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ac26f74486eb854b9e8d57b0ab737f1a2"><td class="memItemLeft" align="right" valign="top"><a id="ac26f74486eb854b9e8d57b0ab737f1a2"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel__state.html#ac26f74486eb854b9e8d57b0ab737f1a2">model_state::model_state_all_off</a> = 0</td></tr>
-<tr class="memdesc:ac26f74486eb854b9e8d57b0ab737f1a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set all flags off. <br /></td></tr>
-<tr class="separator:ac26f74486eb854b9e8d57b0ab737f1a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a41a2a542e1118cbb33a096b80a8aa542"><td class="memItemLeft" align="right" valign="top"><a id="a41a2a542e1118cbb33a096b80a8aa542"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel__state.html#a41a2a542e1118cbb33a096b80a8aa542">model_state::model_state_all_on</a> = NOT(model_state_all_off)</td></tr>
-<tr class="memdesc:a41a2a542e1118cbb33a096b80a8aa542"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set all flags on. <br /></td></tr>
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-<tr class="memitem:a265796c156e0851d06cd56abca659684"><td class="memItemLeft" align="right" valign="top"><a id="a265796c156e0851d06cd56abca659684"></a>
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-<tr class="memdesc:a265796c156e0851d06cd56abca659684"><td class="mdescLeft">&#160;</td><td class="mdescRight">VMEC Equilibrium changed bit position. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel__state.html#a0a1b6e87e05cb5db881a2f8c925a536f">model_state::model_state_siesta_flag</a> = 1</td></tr>
-<tr class="memdesc:a0a1b6e87e05cb5db881a2f8c925a536f"><td class="mdescLeft">&#160;</td><td class="mdescRight">SIESTA Equilibrium changed bit position. <br /></td></tr>
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-<div class="contents">
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-Introduction</h1>
-<p>This page documents the V3FIT interface to the model. This lists all the parameters associated with a model. Model parameters are common for all equilibrium types. All parameters are documented in a table of the following form. </p><table border="1px" width="80%">
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-Model Reconstruction Parameters</h1>
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-Model Derived Parameters</h1>
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-Model Soft X-ray Emissivity</h1>
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-<tr class="separator:a97e4b8b2c5065f5d60ad76d06a74027c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<p>Contains module <a class="el" href="namespacemse__dot.html">mse_dot</a>.  
-<a href="#details">More...</a></p>
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-<tr class="memdesc:a5b120e22a13d0b73c4bab0b585e7c5db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse motional stark effect diagnostic point defined as a vector.  <a href="namespacemse__dot.html#a5b120e22a13d0b73c4bab0b585e7c5db">More...</a><br /></td></tr>
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-<tr class="memdesc:a70509f00e3b50b80647c476b20f8ba2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse motional stark effect diagnostic point defined as angles.  <a href="namespacemse__dot.html#a70509f00e3b50b80647c476b20f8ba2f">More...</a><br /></td></tr>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#mse_dot_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#mse_dot_key_sec">Keywords</a></li>
-<li class="level1"><a href="#mse_dot_point_spec_sec">Point Specification</a></li>
-<li class="level1"><a href="#mse_dot_exam_sec">Example File</a></li>
-<li class="level1"><a href="#mse_dot_prog_ref_sec">Programmers Reference</a></li>
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-<div class="textblock"><h1><a class="anchor" id="mse_dot_intro_sec"></a>
-Introduction</h1>
-<p>Diagnostic dot files specify geometric and auxiliary information about each diagnostic. Parsing of a diagnostic dot file begins by searching for a valid keyword. All lines before a valid keyword is reached are ignored allowing for comments and other information to be inserted in the file. Once a keyword is reached, the parsing becomes strict. The diagnostic description format is dependant on the specific keyword. All diagnostic dot files must end with an <code>end_of_file</code> keyword.</p>
-<p>This document contains information about the motional stark effect point chord specifications. Points are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#a21c831b5d3eb6144de874851c67e9f93">v3fit_input::mse_dot_filename</a> variable of the name list input file. There are two types of MSE points.</p><ul>
-<li>Points specified as vectors of the viewing and neutral beam.</li>
-<li>Points specified directly with angles with respect to the toroidal direction and the horizontal.</li>
-</ul>
-<dl class="section note"><dt>Note</dt><dd>The point of the MSE measurement could be infered from the intersection of the neutral beam vector and the viewing vector. However for numercial reasons the intersection point is expicity defined. </dd>
-<dd>
-The neutral beam vector could have been defined once however it's simpler to define it for each measurement point.</dd></dl>
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-Keywords</h1>
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-<tr>
-<td width="30%"><code>mse_point_XYZ_deg</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_deg</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_rad</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_rad</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_deg_deg</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in degrees. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_deg_deg</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in degrees. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_rad_deg</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in degrees. Direction angles are specifed in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_rad_deg</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in degrees. Direction angles are specifed in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_deg_rad</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in radians. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_deg_rad</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in radians. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_rad_rad</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal in radians. Direction angles are specifed in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_rad_rad</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal in radians. Direction angles are specifed in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_ratio</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal ratio. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_ratio</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal ratio. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_deg_ratio</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal ratio. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_deg_ratio</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal ratio. Direction angles are specifed in degrees. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_XYZ_rad_ratio</code></td><td width="70%">A MSE point specified in Cartesian Coordinates outputting the signal ratio. Direction angles are specifed in radians. </td></tr>
-<tr>
-<td width="30%"><code>mse_point_RPhiDegZ_rad_ratio</code></td><td width="70%">A MSE point specified in Cylindrical Coordinates outputting the signal ratio. Direction angles are specifed in radians. </td></tr>
-</table>
-<h1><a class="anchor" id="mse_dot_point_spec_sec"></a>
-Point Specification</h1>
-<p>All motional stark effect points are specified in the following manner. A string containing the diagnostic name. Three reals specfy the measurement point in 3D.</p>
-<p>Keywords that only have a single angle specification to the vector discription. For these keyword two sets of three reals are start and end points of the viewing cord. The last two sets of real three reals are the start and end points of the neutral beam. Each set of three reals is a point in either Cartesian or Cyclindrical Coordinates depending on the keyword.</p>
-<p>Keywords that contain two angle specification use the angle discription. These keywords specify the angle in using 4 angles. The first line contains the angles alpha and omega. The second set of angles are delta and theta. These angles are defined such that.</p><ul>
-<li>alpha: The angle between the neutral beam and the toroidal direction. When alpha is 0, the neutral beam points in the negative toroidal direction. When alpha is 90, the beam points in the negative radial direction.</li>
-<li>omgea: The angle between the view chord and the torodial direction. When omega is 0, the chord points in the positive toroidal direction. When alpha is 90, the beam points in the negative radial direction.</li>
-<li>delta: The angle between the neutral beam and the horizontal. When delta is 90, the beam points in the negative z direction.</li>
-<li>theta: The angle between the view chord and the horizontal. When delta is 90, the beam points in the positive z direction.</li>
-</ul>
-<p><code>key_word_ang<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x(REAL) y(REAL) z(REAL)<br  />
-</code> <code>vx1(REAL) vy1(REAL) vz1(REAL)<br  />
-</code> <code>vx2(REAL) vy2(REAL) vz2(REAL)<br  />
-</code> <code>nx1(REAL) ny1(REAL) nz1(REAL)<br  />
-</code> <code>nx2(REAL) ny2(REAL) nz2(REAL)<br  />
-</code></p>
-<p><code>key_word_ang_ang<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x(REAL) y(REAL) z(REAL)<br  />
-</code> <code>alpha(REAL) omega(REAL)<br  />
-</code> <code>delta(REAL) theta(REAL)<br  />
-</code></p>
-<h1><a class="anchor" id="mse_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  A motional stark effect chord specified in Cylindrical coordinates using</span></div>
-<div class="line"><span class="comment">!  the vector representation.</span></div>
-<div class="line">mse_point_rphidegz_deg</div>
-<div class="line">mse001</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line">0.0 0.0 0.0</div>
-<div class="line">0.0 1.0 0.0</div>
-<div class="line">-1.0 0.5 0.0</div>
-<div class="line">1.0 0.5 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A motional stark effect chord specified in Cylindrical coordinates using</span></div>
-<div class="line"><span class="comment">!  the angle representation.</span></div>
-<div class="line">mse_point_rphidegz_deg_deg</div>
-<div class="line">mse002</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line">1.0 10.0</div>
-<div class="line">0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h1><a class="anchor" id="mse_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespacemse__dot.html">mse_dot</a> modules. </p>
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-<div class="title">Namelist v3fit_main_nli definition </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#namelist_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#namelist_var_sec">Namelist Variables</a><ul><li class="level2"><a href="#filename_sec">Filename variables</a><ul><li class="level3"><a href="#eq_filename_sec">Equilibrium Filename variables</a></li>
-<li class="level3"><a href="#signal_filename_sec">Signal Filename variables</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#size_sec">Array allocation sizes, numbers to allocate</a></li>
-<li class="level2"><a href="#work_sec">Task specification, work variables</a></li>
-<li class="level2"><a href="#model_profile_sec">Model profile specification</a></li>
-<li class="level2"><a href="#model_spec_sec">Model Specification Variables</a></li>
-<li class="level2"><a href="#recon_con_sec">Reconstruction constraints (DEPRECATED)</a></li>
-<li class="level2"><a href="#derived_param_sec">Derived parameter specification</a></li>
-<li class="level2"><a href="#recon_param_sec">Reconstruction parameter specification</a></li>
-<li class="level2"><a href="#lock_param_sec">Locking parameter specification</a></li>
-<li class="level2"><a href="#signal_spec_sec">Signal Data specification</a><ul><li class="level3"><a href="#sigma_spec_sec">Signal Data sigma specification</a></li>
-<li class="level3"><a href="#weight_spec_sec">Signal Data weight specification</a></li>
-<li class="level3"><a href="#magnetic_spec_sec">Magnetic signal specification</a></li>
-<li class="level3"><a href="#sfactor_spec_sec">Signal Scale Factor Specification</a></li>
-<li class="level3"><a href="#soffset_spec_sec">Signal Offset Specification</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#magnetic_sec">Magnetic signal parameters</a></li>
-<li class="level2"><a href="#extcurz_sec">These two are used by the extcurz diagnostic signal.</a></li>
-<li class="level2"><a href="#geometric_sec">Geometric information</a><ul><li class="level3"><a href="#lif_sec">Limiter_Iso Function.</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#prior_sec">Prior information</a></li>
-<li class="level2"><a href="#gp_sec">Guassian process signal variables</a></li>
-<li class="level2"><a href="#coosig_sec">COOSIG - Combination Of Other SIGnals NLI Variables</a></li>
-<li class="level2"><a href="#plasma_off_sec">Plasma Offset Section</a></li>
-<li class="level2"><a href="#recon_sec">Reconstruction step control NLI variables</a></li>
-<li class="level2"><a href="#int_sec">Integration parameters</a></li>
-<li class="level2"><a href="#xcdot_sec">VMEC zero out xcdot control</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#namelist_exam_sec">Example Files</a><ul><li class="level2"><a href="#namelist_exam_v3post_sec">V3POST Example</a></li>
-<li class="level2"><a href="#namelist_exam_reconstruction_sec">Reconstruction Example</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#namelist_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="namelist_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a namelist input file. V3FIT namelist variables are defined in the <code>v3fit_main_nli</code> common block.</p>
-<h1><a class="anchor" id="namelist_var_sec"></a>
-Namelist Variables</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<h2><a class="anchor" id="filename_sec"></a>
-Filename variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>main_nli_filename</code></td><td width="50%">File name for main namelist input.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad1c31938a79add9637c1d186dfccd1ff">v3fit_input::main_nli_filename</a> </td></tr>
-</table>
-<h3><a class="anchor" id="eq_filename_sec"></a>
-Equilibrium Filename variables</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>vmec_nli_filename</code></td><td width="50%">File name for VMEC namelist input.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aaeec2a0fe790641ebac2a03c7abd7a4c">v3fit_input::vmec_nli_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>vmec_wout_input</code></td><td width="50%">File name for the VMEC wout file to start from.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#af43c8cf4a63999f530db578544ef50bd">v3fit_input::vmec_wout_input</a> </td></tr>
-<tr>
-<td width="20%"><code>vacuum_nli_filename</code></td><td width="50%">File name for a vacuum namelist input. The file specification is described in the <a class="el" href="vacuum_namelist_sec.html">Namelist vacuum_main_nli definition</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab3d7f3dfd9add7dbc482aeb1a1a63cd5">v3fit_input::vacuum_nli_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>siesta_nli_filename</code></td><td width="50%">File name for siesta namelist input.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afb389a447b59890dce1eddceb64cce01">v3fit_input::siesta_nli_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>siesta_restart_filename</code></td><td width="50%">File name for a siesta restart file.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2d40e6ec26c58cffa367843b0491d5aa">v3fit_input::siesta_restart_filename</a> </td></tr>
-</table>
-<h3><a class="anchor" id="signal_filename_sec"></a>
-Signal Filename variables</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>mdsig_list_filename</code></td><td width="50%">File name for list of MDSIG files.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a996b17010c59ba9bcccf546b259fbcc9">v3fit_input::mdsig_list_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>sxrch_dot_filename</code></td><td width="50%">File holding soft x-ray chord information. The file specification is described in the <a class="el" href="sxrem_dot_sec.html">Soft X-Ray Diagnostic Dot File</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a72d9b20480f9377f4ebc813caa9c4fda">v3fit_input::sxrch_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>thscte_dot_filename</code></td><td width="50%">File holding Thomson scattering information. The file specification is described in the <a class="el" href="thomson_dot_sec.html">Thomson Scattering Diagnostic Dot File</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a44c3bf45a946bb5583996a47eab2e1c7">v3fit_input::thscte_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>ipch_dot_filename</code></td><td width="50%">File holding interferometry-polarimetry chord information. The file specification is described in the <a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae1fe6c8994f39bfe0b7a5b2a576fccdb">v3fit_input::ipch_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>mse_dot_filename</code></td><td width="50%">File holding motional stark effect information. The file specification is described in the mse_ratio_dot_sec.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a21c831b5d3eb6144de874851c67e9f93">v3fit_input::mse_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>ece_dot_filename</code></td><td width="50%">File holding electron cyclotron emission information. The file specification is described in the <a class="el" href="ece_dot_sec.html">ECE Diagnostic Dot File</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#af786af93e310aa065e95b891ae9cb5ab">v3fit_input::ece_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>sxrem_ratio_dot_filename</code></td><td width="50%">File holding soft x-ray emissivity ratio information. The file specification is described in the <a class="el" href="sxrem_ratio_dot_sec.html">Soft X-ray Emissivity Ratio Dot File</a>.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">v3fit_input::sxrem_ratio_dot_filename</a> </td></tr>
-<tr>
-<td width="20%"><code>limiter_grid_file</code></td><td width="50%">File to load the limiter grid functions.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aec2b0fa4f3dd7e442368fcd37fc50ed9">v3fit_input::limiter_grid_file</a> </td></tr>
-</table>
-<h2><a class="anchor" id="size_sec"></a>
-Array allocation sizes, numbers to allocate</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>na_s_desc</code></td><td width="50%">s_desc array, signal_desc</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a9f1c5fc5b7869f26ebb650afbb55d73b">v3fit_input::na_s_desc</a> </td></tr>
-</table>
-<h2><a class="anchor" id="work_sec"></a>
-Task specification, work variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>my_task</code></td><td width="50%">Character: to specify task in MAIN select case. Possible tasks are:<ol type="1">
-<li><code>'equilibrium'</code> Solve the equilibrium.</li>
-<li><code>'v3post'</code> Solve the equilibrium and compute modeled signals.</li>
-<li><code>'reconstruct'</code> Reconstruct the equilibirum.</li>
-<li><code>'units_tests'</code> Run the internal unit tests.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> </td></tr>
-</table>
-<h2><a class="anchor" id="model_profile_sec"></a>
-Model profile specification</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>pp_ne_ptype</code></td><td width="50%">Model electron density profile, parameterized profile type. Valid profile types are defined in <a class="el" href="profile_sec.html">Profiles types.</a></td><td width="30%"><a class="el" href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">v3fit_input::pp_ne_ptype</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_b</code></td><td width="50%">Array of b_coefficients for the electron density profile.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">v3fit_input::pp_ne_b</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_as</code></td><td width="50%">Array of as_coefficients electron density splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">v3fit_input::pp_ne_as</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_af</code></td><td width="50%">Array of af_coefficients electron density splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">v3fit_input::pp_ne_af</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_ptype</code></td><td width="50%">Model soft x-ray emissivity profile, parameterized profile type. Valid profile types are defined in <a class="el" href="profile_sec.html">Profiles types.</a></td><td width="30%"><a class="el" href="namespacev3fit__input.html#afbb75117e851be78b8e4360e7383c199">v3fit_input::pp_sxrem_ptype</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b</code></td><td width="50%">Array of b_coefficients for the soft x-ray emissivity profile. <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacev3fit__input.html#a9cc45d9107490ae0070289782b75730c">v3fit_input::pp_sxrem_b</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_as</code></td><td width="50%">Array of as_coefficients soft x-ray emissivity splines. <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad7a27d4aa3c3a65027b34183f95533a4">v3fit_input::pp_sxrem_as</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_af</code></td><td width="50%">Array of af_coefficients soft x-ray emissivity splines. <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacev3fit__input.html#a85e26804e0bad2a97fe7582c1db8768c">v3fit_input::pp_sxrem_af</a> </td></tr>
-<tr>
-<td width="20%"><code>num_sxrem_p</code></td><td width="50%">Number of soft x-ray emissivity profiles.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2e2e535fc263699fec1e12f28860a658">v3fit_input::num_sxrem_p</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_ptype_a</code></td><td width="50%">Model soft x-ray emissivity profile, parameterized profile type. Valid profile types are defined in <a class="el" href="profile_sec.html">Profiles types.</a></td><td width="30%"><a class="el" href="namespacev3fit__input.html#ac44e39737eeaa08518fcc237d4db83ff">v3fit_input::pp_sxrem_ptype_a</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b_a</code></td><td width="50%">Array of b_coefficients for the soft x-ray emissivity profile.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">v3fit_input::pp_sxrem_b_a</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_as_a</code></td><td width="50%">Array of as_coefficients soft x-ray emissivity splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">v3fit_input::pp_sxrem_as_a</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_af_a</code></td><td width="50%">Array of af_coefficients soft x-ray emissivity splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">v3fit_input::pp_sxrem_af_a</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_te_ptype</code></td><td width="50%">Model electron temperature profile, parameterized profile type. Valid profile types are defined in <a class="el" href="profile_sec.html">Profiles types.</a></td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">v3fit_input::pp_te_ptype</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_te_b</code></td><td width="50%">Array of b_coefficients for the e-temperature profile.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">v3fit_input::pp_te_b</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_te_as</code></td><td width="50%">Array of as_coefficients e-temperature splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">v3fit_input::pp_te_as</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_te_af</code></td><td width="50%">Array of af_coefficients e-temperature splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">v3fit_input::pp_te_af</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_ptype</code></td><td width="50%">Model ion temperature profile, parameterized profile type. Valid profile types are defined in <a class="el" href="profile_sec.html">Profiles types.</a></td><td width="30%"><a class="el" href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">v3fit_input::pp_ti_ptype</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_b</code></td><td width="50%">Array of b_coefficients for the i-temperature profile.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">v3fit_input::pp_ti_b</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_as</code></td><td width="50%">Array of as_coefficients i-temperature splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">v3fit_input::pp_ti_as</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_af</code></td><td width="50%">Array of af_coefficients i-temperature splines.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">v3fit_input::pp_ti_af</a> </td></tr>
-<tr>
-<td width="20%"><code>sxrem_te</code></td><td width="50%">Array of temperature points for the sxrem ratio function.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae012a2d7050755e3fa8f0b4075fa722f">v3fit_input::sxrem_te_a</a> </td></tr>
-<tr>
-<td width="20%"><code><a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a></code></td><td width="50%">Array of ratio points for the sxrem ratio function.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1aea7c110a801736a6c3125a5aac348d">v3fit_input::sxrem_ratio_a</a> </td></tr>
-</table>
-<h2><a class="anchor" id="model_spec_sec"></a>
-Model Specification Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>model_eq_type</code></td><td width="50%">Character variable to specify the underlying equilibrium mode.<ol type="1">
-<li><code>'vmec'</code> Vmec equilibrium model. Default</li>
-<li><code>'vacuum'</code> Vacuum equilibrium model.</li>
-<li><code>'siesta'</code> Siesta equilibrium model.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a4f1b83d2c8ed6f395bc810bc09660b71">v3fit_input::model_eq_type</a> </td></tr>
-<tr>
-<td width="20%"><code>model_ne_type</code></td><td width="50%">Character variable to specify how the electron density will be calculated by the model.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_ne'</code> Calculated from the parameterized profile pp_ne.</li>
-<li><code>'pp_te_p'</code> Calculated from the pp_te and the VMEC pressure</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">v3fit_input::model_ne_type</a> </td></tr>
-<tr>
-<td width="20%"><code>model_sxrem_type</code></td><td width="50%">Character variable to specify how the Soft x-ray emissivity will be calculated by the model.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_sxrem'</code> Calculated from the parameterized profile pp_sxrem. <b>DEPRECATED</b> <b></b> </li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a31674b0ebbae407f94a99371be9b0636">v3fit_input::model_sxrem_type</a> </td></tr>
-<tr>
-<td width="20%"><code>model_sxrem_type_a</code></td><td width="50%">Character array to specify how the Soft x-ray emissivity will be calculated by the model.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_sxrem'</code> Calculated from the parameterized profile pp_sxrem.</li>
-<li><code>'pp_sxrem_te_ne'</code> Calculated from pp_te and pp_ne.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afa630ce3b00c409dfb57c00141d1aaa8">v3fit_input::model_sxrem_type_a</a> </td></tr>
-<tr>
-<td width="20%"><code>model_te_type</code></td><td width="50%">Character variable to specify how the e-temperature will be calculated by the model.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_te'</code> Calculated from the parameterized profile pp_te.</li>
-<li><code>'pp_ne_vmec_p','pp_ne_p'</code> Calculated from the pp_ne and the VMEC pressure.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a03a390c32ec9004a1eec1e1022e8b363">v3fit_input::model_te_type</a> </td></tr>
-<tr>
-<td width="20%"><code>model_ti_type</code></td><td width="50%">Character variable to specify how the e-temperature will be calculated by the model.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_ti'</code> Calculated from the parameterized profile pp_ti.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad8e4c794da51a61f1ee96e1d61ea15c4">v3fit_input::model_ti_type</a> </td></tr>
-<tr>
-<td width="20%"><code>ne_pp_unit</code></td><td width="50%">Scaling/conversion factor for the density. ne * ne_pp_unit is assumed to have units of m^-3.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae356013fdf423e4188fbf9e1cddf3599">v3fit_input::ne_pp_unit</a> </td></tr>
-<tr>
-<td width="20%"><code>ne_min</code></td><td width="50%">Minimum electron density, m^-3.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa94f9318f90453e9dc5e661f69439b68">v3fit_input::ne_min</a> </td></tr>
-<tr>
-<td width="20%"><code>te_min</code></td><td width="50%">Minimum electron temperature, eV.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a084d31503aaa6c68d046a1d41a9eaf63">v3fit_input::te_min</a> </td></tr>
-<tr>
-<td width="20%"><code>ti_min</code></td><td width="50%">Minimum ion temperature, eV.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a0367dfcbb23024e3e527e86df2ca6b68">v3fit_input::ti_min</a> </td></tr>
-<tr>
-<td width="20%"><code>sxrem_min</code></td><td width="50%">Minimum soft x-ray emission.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ac0fb1e3a467bb70bfcb7098781678eba">v3fit_input::sxrem_min</a> </td></tr>
-<tr>
-<td width="20%"><code>e_pressure_fraction</code></td><td width="50%">Electron pressure fraction of the total pressure. Used when model_te_type = 'pp_ne_vmec_p' or model_ne_type = 'pp_te_vmec_p'</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5ed8f65dd06c73918ebfa04ede7b5fb1">v3fit_input::e_pressure_fraction</a> </td></tr>
-<tr>
-<td width="20%"><code>emission_file</code></td><td width="50%">Path to file defining the soft x-ray emission. <dl class="section see"><dt>See also</dt><dd><a class="el" href="emission_file_sec.html">Soft X-Ray Emission File Manual</a> </dd></dl>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a9b6bbdb8aafa7343b19b4ddba3c02512">v3fit_input::emission_file</a> </td></tr>
-<tr>
-<td width="20%"><code>ece_resonance_range</code></td><td width="50%">Range to find the ECE resonance within.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5ea57408967601f98371a8a2f9985895">v3fit_input::ece_resonance_range</a> </td></tr>
-<tr>
-<td width="20%"><code>coosig_wgts</code></td><td width="50%">Array of combination signal weights.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a4fa5b11ba2b5ef8f1b1d967b35fbaa8a">v3fit_input::coosig_wgts</a> </td></tr>
-</table>
-<h2><a class="anchor" id="recon_con_sec"></a>
-Reconstruction constraints (DEPRECATED)</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_rc</code></td><td width="50%">Number of reconstruction constraints</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa1ebc0f638a20b685987f0dfe1c72c4c">v3fit_input::n_rc</a> </td></tr>
-<tr>
-<td width="20%"><code>rc_type</code></td><td width="50%">Array of reconstruction constraint types</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a21db612f7dc38fd8a98cfce3b527c509">v3fit_input::rc_type</a> </td></tr>
-<tr>
-<td width="20%"><code>rc_index</code></td><td width="50%">Array of reconstruction constraint indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a3341ca9d709df8ae0f49946bfdc5a4e4">v3fit_input::rc_index</a> </td></tr>
-<tr>
-<td width="20%"><code>rc_value</code></td><td width="50%">Array of reconstruction constraint values</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a6785668e1153612adfe5ed8676bdf289">v3fit_input::rc_value</a> </td></tr>
-</table>
-<h2><a class="anchor" id="derived_param_sec"></a>
-Derived parameter specification</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_dp</code></td><td width="50%">Number of derived parameters</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a7adc371e0b3a169e5e4beacbf6be9478">v3fit_input::n_dp</a> </td></tr>
-<tr>
-<td width="20%"><code>dp_type</code></td><td width="50%">Array of derived parameter types. Any parameter can be a a derived parameter.<ul>
-<li><a class="el" href="vmec_equilibrium_sec.html#vmec_equilibrium_derive_param_sec">VMEC Derived Parameters</a></li>
-<li><a class="el" href="model_sec.html#model_derived_param_sec">Model Derived Parameters</a></li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1fe6cc0ff64e6eb910c6f8c717677896">v3fit_input::dp_type</a> </td></tr>
-<tr>
-<td width="20%"><code>dp_index</code></td><td width="50%">Array of derived parameter indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5a5beb5e288bc2e2601a6d553ddfbcce">v3fit_input::dp_index</a> </td></tr>
-</table>
-<h2><a class="anchor" id="recon_param_sec"></a>
-Reconstruction parameter specification</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_rp</code></td><td width="50%">Number of reconstruction parameters</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a6c1c93425f04f7f004593be942760314">v3fit_input::n_rp</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_type</code></td><td width="50%">Array of reconstruction parameter types. Valid reconstruction parameters are defined by the <a class="el" href="namespacemodel.html">model</a> or the equilibirum.<ul>
-<li><a class="el" href="model_sec.html#model_recon_param_sec">Model Reconstruction Parameters</a></li>
-<li><a class="el" href="vmec_equilibrium_sec.html#vmec_equilibrium_recon_param_sec">VMEC Reconstruction Parameters</a></li>
-<li><a class="el" href="vacuum_equilibrium_sec.html#vacuum_equilibrium_recon_param_sec">Vacuum Reconstruction Parameters</a></li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afbcb33671b5363e966f6155d12925e2a">v3fit_input::rp_type</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_index</code></td><td width="50%">Array of reconstruction parameter indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a922dfb1a34849076bf51434ddee6befa">v3fit_input::rp_index</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_index2</code></td><td width="50%">Array of reconstruction parameter 2nd indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2aebe7cefbdfff183e687deb3ad098c0">v3fit_input::rp_index2</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_vrnc</code></td><td width="50%">Array of reconstruction parameter variances</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2b70e391fc06040c923c580b881bbd28">v3fit_input::rp_vrnc</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_range_type</code></td><td width="50%"><p class="starttd">2D Array of reconstruction parameter range types</p><ol type="1">
-<li><code>'infinity'</code> Unbounded</li>
-<li><code>'value'</code> Bounded by the value of rp_range_value</li>
-<li><code>&lt;other&gt;</code> Bounded by an equilibrium parameter.</li>
-</ol>
-<p class="intertd">Any parameter maybe used as a constraint.</p><ul>
-<li><a class="el" href="model_sec.html">Model Manual</a></li>
-<li><a class="el" href="vmec_equilibrium_sec.html">VMEC Equilibrium Manual</a></li>
-<li><a class="el" href="vacuum_equilibrium_sec.html">Vacuum Equilibrium Manual</a></li>
-<li><a class="el" href="siesta_equilibrium_sec.html">SIESTA Equilibrium Manual</a></li>
-</ul>
-<p class="endtd">The second index contains the low and high range types respectively.</p>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad37a237759d4d29d0d8b029a7c3274be">v3fit_input::rp_range_type</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_range_value</code></td><td width="50%">2D Array of values used if rp_range_type = <code>'value'</code>. The second index contains the low and high values repectively.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1cd8831eb51c75138324c8617f3addaf">v3fit_input::rp_range_value</a> </td></tr>
-<tr>
-<td width="20%"><code>rp_range_index</code></td><td width="50%">3D Array of values of indicies used if, rp_range_type = <code>&lt;other&gt;</code>. The second index specifies the low and high ranges repectively. The third index contains the first and second index of the inequality constraint parameter.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a325ac78603af52466c911d346ef21b9f">v3fit_input::rp_range_index</a> </td></tr>
-</table>
-<h2><a class="anchor" id="lock_param_sec"></a>
-Locking parameter specification</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_lp</code></td><td width="50%">Number of derived parameters</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a7adc371e0b3a169e5e4beacbf6be9478">v3fit_input::n_dp</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_type</code></td><td width="50%">Array of locking parameter types. Any reconstuction parameter can be a locking parameter. Valid reconstruction parameters are defined by the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.<ul>
-<li><a class="el" href="model_sec.html#model_recon_param_sec">Model Reconstruction Parameters</a></li>
-<li><a class="el" href="vmec_equilibrium_sec.html#vmec_equilibrium_recon_param_sec">VMEC Reconstruction Parameters</a></li>
-<li><a class="el" href="vacuum_equilibrium_sec.html#vacuum_equilibrium_recon_param_sec">Vacuum Reconstruction Parameters</a></li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a573efd2e66f6513ec56822452cd0412c">v3fit_input::lp_type</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_index</code></td><td width="50%">Array of locking parameter indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#addec141a80c9f49c9ab6f07c673e1348">v3fit_input::lp_index</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_index2</code></td><td width="50%">Array of locking parameter 2nd indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab9fa5501afe4180f079943391a110241">v3fit_input::lp_index2</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_sets</code></td><td width="50%">Array of parameter to lock to. Any model or equilibrium parameter maybe locked to.<ul>
-<li><a class="el" href="model_sec.html">Model Manual</a></li>
-<li><a class="el" href="vmec_equilibrium_sec.html">VMEC Equilibrium Manual</a></li>
-<li><a class="el" href="vacuum_equilibrium_sec.html">Vacuum Equilibrium Manual</a></li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2a6b52611571eb12a99cf08bb36160a1">v3fit_input::lp_sets</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_sets_index</code></td><td width="50%">Array of locking parameter sets indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a38c02cb03f69ba62fffd17714561bee0">v3fit_input::lp_sets_index</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_sets_index2</code></td><td width="50%">Array of locking parameter sets 2nd indices</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a01e2fa62a9ee2f8233055d811fa0a8ef">v3fit_input::lp_sets_index2</a> </td></tr>
-<tr>
-<td width="20%"><code>lp_sets_coeff</code></td><td width="50%">Array of locking sets coefficients</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a247aa2d91b019cc2af097d86b400228e">v3fit_input::lp_sets_coeff</a> </td></tr>
-</table>
-<h2><a class="anchor" id="signal_spec_sec"></a>
-Signal Data specification</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_sdata_o</code></td><td width="50%">Number of signal_data observations <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacev3fit__input.html#a0b959b12e237e9d4266f269f4b67ca86">v3fit_input::n_sdata_o</a> </td></tr>
-<tr>
-<td width="20%"><code>iw_sdo_verbose</code></td><td width="50%">Integer to control write out of signal_data observations. (-1, no write, otherwise, verbosity)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aea70aa9d8ac8fbac3e2aac8813ba649a">v3fit_input::iw_sdo_verbose</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_data_a</code></td><td width="50%">Array of data for observed signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5eccf98434b659e7a02f3cfe51b43fed">v3fit_input::sdo_data_a</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_sigma_a</code></td><td width="50%">Array of sigmas for observed signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ac4381a40c42a88f830641b747aa3f6a4">v3fit_input::sdo_sigma_a</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_weight_a</code></td><td width="50%">Array of weight for observed signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aaf7f90ceb1b3e5c528a69b9dbac48795">v3fit_input::sdo_weight_a</a> </td></tr>
-<tr>
-<td width="20%"><code>mag_a</code></td><td width="50%">Array of flags for magnetc signals. This flags controls if the induced signal is included in the total signal for an individual magentic signal.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab411452479e901a79f09ae2361bebd2b">v3fit_input::mag_a</a> </td></tr>
-<tr>
-<td width="20%"><code>mag_3D_a</code></td><td width="50%">Array of flags for magnetc signals. This flags controls if the axisymmtric portion is subtracted off the total signal. By default this is false and the total signal is used.</td><td width="30%">v3fit_input::mag_3D_a </td></tr>
-<tr>
-<td width="20%"><code>mag_force_coil</code></td><td width="50%">Flag to force the computation of induced signals. Some equilibria do not contain information about external currents. This allows the magnetic signals to include contributions from external coils when the equilibrium does not. This has no affect on the total signal if mag_a is false.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa1a2082e5115ba5f13f6bf31e5f2014a">v3fit_input::mag_force_coil</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_spec_can_overwrite</code></td><td width="50%">Logical controlling if the sdo_*_spec_ overwrites values in the sdo_sigma_a array. Defaults to true.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#adf569e8c30db521a4cbea257752d0c4b">v3fit_input::sdo_spec_can_overwrite</a> </td></tr>
-</table>
-<h3><a class="anchor" id="sigma_spec_sec"></a>
-Signal Data sigma specification</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>sdo_s_spec_imin</code></td><td width="50%">Array of minimum index values for specifying sigmas</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a84bec11b26633f36ec725c42617cd579">v3fit_input::sdo_s_spec_imin</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_s_spec_imax</code></td><td width="50%">Array of maximum index values for specifying sigmas</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afde913ecbabb4dbe6d11a2078f846370">v3fit_input::sdo_s_spec_imax</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_s_spec_floor</code></td><td width="50%">Array of floor values for specifying sigmas</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a640d556ef08bd4ecdd97af9788d1bfd8">v3fit_input::sdo_s_spec_floor</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_s_spec_fraction</code></td><td width="50%">Array of fractional values for specifying sigmas<ul>
-<li>floor &gt; 0, sigma = max(floor,fraction * sdo)</li>
-<li>floor &lt; 0, sigma = sqrt(floor ** 2 + (fraction * sdo) ** 2)</li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a0e1a5aa868d02a69a147362a819b6674">v3fit_input::sdo_s_spec_fraction</a> </td></tr>
-</table>
-<h3><a class="anchor" id="weight_spec_sec"></a>
-Signal Data weight specification</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>sdo_w_spec_imin</code></td><td width="50%">Array of minimum index values for specifying weights</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a4baaac56042fab4c55405184367ce17e">v3fit_input::sdo_w_spec_imin</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_w_spec_imax</code></td><td width="50%">Array of maximum index values for specifying weights</td><td width="30%"><a class="el" href="namespacev3fit__input.html#abb1616830d26e0ab66f3b46d59f81831">v3fit_input::sdo_w_spec_imax</a> </td></tr>
-<tr>
-<td width="20%"><code>sdo_w_spec_weight</code></td><td width="50%">Array of weight values for specifying weights</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2b0c487db8a1b6aa5eb18d3919aa31fc">v3fit_input::sdo_w_spec_weight</a> </td></tr>
-</table>
-<h3><a class="anchor" id="magnetic_spec_sec"></a>
-Magnetic signal specification</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>mag_spec_imin</code></td><td width="50%">Array of minimum index values for specifying plasma only signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa13b923b10e98758cabc2d14896a0551">v3fit_input::mag_spec_imin</a> </td></tr>
-<tr>
-<td width="20%"><code>mag_spec_imax</code></td><td width="50%">Array of maximum index values for specifying plasma only signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae304f641e15cd1885631abf6d2efe1af">v3fit_input::mag_spec_imax</a> </td></tr>
-<tr>
-<td width="20%"><code>mag_spec_use_induced</code></td><td width="50%">Array of logicals for specifying plasma only signals</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a35eea91e2c76dcd3e49b9d20574e3157">v3fit_input::mag_spec_use_induced</a> </td></tr>
-</table>
-<h3><a class="anchor" id="sfactor_spec_sec"></a>
-Signal Scale Factor Specification</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>sfactor_spec_imin</code></td><td width="50%">Array of minimum index values for specifying signal scale factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a7d7388793df867a50aae96474807c9ae">v3fit_input::sfactor_spec_imin</a> </td></tr>
-<tr>
-<td width="20%"><code>sfactor_spec_imax</code></td><td width="50%">Array of maximum index values for specifying signal scale factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a0c9e757dd5e7fc3203b6da6363cbd31b">v3fit_input::sfactor_spec_imax</a> </td></tr>
-<tr>
-<td width="20%"><code>sfactor_spec_fac</code></td><td width="50%">Array of scale values for specifying signal scale factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aeedb001946f7995fdb6e7549e4fc1729">v3fit_input::sfactor_spec_fac</a> </td></tr>
-</table>
-<h3><a class="anchor" id="soffset_spec_sec"></a>
-Signal Offset Specification</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>soffset_spec_imin</code></td><td width="50%">Array of minimum index values for specifying signal offset factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a2899fb18ce5ae15243a0b67f9adbef94">v3fit_input::soffset_spec_imin</a> </td></tr>
-<tr>
-<td width="20%"><code>soffset_spec_imax</code></td><td width="50%">Array of maximum index values for specifying signal offset factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a865f82a521a5c0de1a798076bf9b5e12">v3fit_input::soffset_spec_imax</a> </td></tr>
-<tr>
-<td width="20%"><code>soffset_spec_fac</code></td><td width="50%">Array of offset values for specifying signal offset factors</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afcd1be81ddae51729f5642e4fd2f0fa5">v3fit_input::soffset_spec_fac</a> </td></tr>
-</table>
-<h2><a class="anchor" id="magnetic_sec"></a>
-Magnetic signal parameters</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>pol_rad_ratio</code></td><td width="50%">Ratio of the radial grid points to the poloidal grid points for the plasma only volumn integration.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a7a3cf3ce87524d4a927e44343ff6690a">v3fit_input::pol_rad_ratio</a> </td></tr>
-</table>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000009">Todo:</a></b></dt><dd>FIXME: S and U are VMEC specific. Make these a radial position and poloidal angle. </dd></dl>
-<h2><a class="anchor" id="extcurz_sec"></a>
-These two are used by the extcurz diagnostic signal.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>extcurz_s0</code></td><td width="50%">S position to integrate about.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">v3fit_input::extcurz_s0</a> </td></tr>
-<tr>
-<td width="20%"><code>extcurz_u0</code></td><td width="50%">U position to integrate about.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a555584a3df19eb60f116d9f7a9bc4211">v3fit_input::extcurz_u0</a> </td></tr>
-</table>
-<h2><a class="anchor" id="geometric_sec"></a>
-Geometric information</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>r_major_radius</code></td><td width="50%">For circular torus geometric</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a9059b0461b1526f0b37edd0ed8471f1b">v3fit_input::r_major_radius</a> </td></tr>
-<tr>
-<td width="20%"><code>a_minor_radius</code></td><td width="50%">For circular torus geometric</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a457741ccea4be3ff7dab9609a1c6040c">v3fit_input::a_minor_radius</a> </td></tr>
-</table>
-<h3><a class="anchor" id="lif_sec"></a>
-Limiter_Iso Function.</h3>
-<p>First dimension of arrays is dimensioned na_lif </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_lif</code></td><td width="50%">number of limiter_iso functions</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a85d99f2d1957cd777b3cc8bec31fdec8">v3fit_input::n_lif</a> </td></tr>
-<tr>
-<td width="20%"><code>n_phi_lif</code></td><td width="50%">array of number of phi values (:)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae88a1c871a7c457edc0d474995323382">v3fit_input::n_phi_lif</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_arz</code></td><td width="50%">array of r-z polynomial coefficients (:,0:4,0:4)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a3cdeac24ffe859cc7d02ce89e50cbb0b">v3fit_input::lif_arz</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_rc</code></td><td width="50%">array of r offset values (:)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a4c7b9c1bb980f6d66aa1e7114aca0a2c">v3fit_input::lif_rc</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_zc</code></td><td width="50%">array of z offset values (:)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a302b7767d09f14ef9b7432faec8f485d">v3fit_input::lif_zc</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_sigma</code></td><td width="50%">array of sigma values (:)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1c59562442dd0357a132744ea7bfb93c">v3fit_input::lif_sigma</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_phi_degree</code></td><td width="50%">array of phi values (:,na_phis_lif)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a37c539b1ed29562125f0931762de7835">v3fit_input::lif_phi_degree</a> </td></tr>
-<tr>
-<td width="20%"><code>lif_on_edge</code></td><td width="50%">array of logical values (:)<ul>
-<li>true - edge of plasma is on limiter</li>
-<li>false - edge of plasma is within limiter</li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad059df5d621362dfaec5d6a863fe7fce">v3fit_input::lif_on_edge</a> </td></tr>
-</table>
-<h2><a class="anchor" id="prior_sec"></a>
-Prior information</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_prior</code></td><td width="50%">Number of specified priors.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa9a8acf596701ecc2bba5b32c7bc0389">v3fit_input::n_prior</a> </td></tr>
-<tr>
-<td width="20%"><code>prior_name</code></td><td width="50%">Name of the specified priors.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a30b5db6c5eae2374369b9be3d8b189d6">v3fit_input::prior_name</a> </td></tr>
-<tr>
-<td width="20%"><code>prior_param_name</code></td><td width="50%">Name of the prior parameter. Any model or equilirbium parameter maybe used as a prior.<ul>
-<li><a class="el" href="model_sec.html">Model Manual</a></li>
-<li><a class="el" href="vmec_equilibrium_sec.html">VMEC Equilibrium Manual</a></li>
-<li><a class="el" href="vacuum_equilibrium_sec.html">Vacuum Equilibrium Manual</a></li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a82605442d5d24ccb42c4e0b82ca8764b">v3fit_input::prior_param_name</a> </td></tr>
-<tr>
-<td width="20%"><code>prior_indices</code></td><td width="50%">2D array of the ith and jth index of the parameter. The second index contains the first and second indicies repectively.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aaf059e86644d4f94716216ee191c60b2">v3fit_input::prior_indices</a> </td></tr>
-<tr>
-<td width="20%"><code>prior_units</code></td><td width="50%">The units of the prior signal.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ada19786a1d2a3762727c1ec3c46c7e40">v3fit_input::prior_units</a> </td></tr>
-</table>
-<h2><a class="anchor" id="gp_sec"></a>
-Guassian process signal variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_gp</code></td><td width="50%">Number of gaussian processes.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a6096056621b3bfbc8be65b43df8ce4bd">v3fit_input::n_gp</a> </td></tr>
-<tr>
-<td width="20%"><code>n_gp_signal</code></td><td width="50%">Number of signals in a gaussian process signal.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#aa41b29b78fa647a3a3877948477defb5">v3fit_input::n_gp_signal</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_signal_indices</code></td><td width="50%">Indices of the signals to include in the GP.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#adc9e27c054bb4c604e2ca5dddfa6e136">v3fit_input::gp_signal_indices</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_model_type</code></td><td width="50%">Gaussian process profile the guassian process uses.<ol type="1">
-<li><code>'none'</code> No profile.</li>
-<li><code>'te'</code> Electron temperature profile.</li>
-<li><code>'ti'</code> Ion profile.</li>
-<li><code>'ne'</code> Denisty profile.</li>
-<li><code>'sxrem'</code> Soft X-ray profile.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a56bb34e313d78d0c5630a83a1dc4d53b">v3fit_input::gp_model_type</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_model_index</code></td><td width="50%">Profile index.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#abfe80817d9f2b145f130f61dd1a1969f">v3fit_input::gp_model_index</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_param_vrnc</code></td><td width="50%">Array of Gaussian process parameter variances.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a56b11d42c6665df47371874e9c994deb">v3fit_input::gp_param_vrnc</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_tolerance</code></td><td width="50%">Stopping criteria for the gradient ascent to maximize the log of the evidence.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#afa61fd490a6502b6ea4cca7996b87b14">v3fit_input::gp_tolerance</a> </td></tr>
-<tr>
-<td width="20%"><code>gp_cholesky_fact</code></td><td width="50%">The Gaussian process uses a cholesky decompositions to factor a matrix. It assumes that the matrix is positive def. Which is true analytically. This input can be used to add a small offset to the matrix to insure positive def.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5242d2d8ea000f7202563cabc5739971">v3fit_input::gp_cholesky_fact</a> </td></tr>
-</table>
-<h2><a class="anchor" id="coosig_sec"></a>
-COOSIG - Combination Of Other SIGnals NLI Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>n_coosig</code></td><td width="50%">Number of new signals of signal_type coosig</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a33aae0a4b63d98db40161869d222aaec">v3fit_input::n_coosig</a> </td></tr>
-<tr>
-<td width="20%"><code>n_sig_coosig</code></td><td width="50%">Array of number of signals in a combinaton.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">v3fit_input::n_sig_coosig</a> </td></tr>
-<tr>
-<td width="20%"><code>coosig_indices</code></td><td width="50%">2d Integer Array of indices (to list of signals) for combinations. First index is for which new signal, second index is for terms in the combination</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1b45c303a4a33d3aeb9e7c10f01a72e3">v3fit_input::coosig_indices</a> </td></tr>
-<tr>
-<td width="20%"><code>coosig_coeff</code></td><td width="50%">2d real array of coefficients for the combination (a's in the type)</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad2cccf80c02ca6ba2de6d4b8e2868606">v3fit_input::coosig_coeff</a> @item{coosig_type, Character array of combination types<ol type="1">
-<li><code>'sum'</code> - linear combination</li>
-<li><code>'max'</code> - maximum of weighted signals</li>
-<li><code>'min'</code> - minimum of weighted signals,</li>
-<li><code>'wavg'</code> - weighted average of two signal, <a class="el" href="namespacev3fit__input.html#a5f11fb1eaefb9e1baa4420405c09dff1" title="Combination type.">v3fit_input::coosig_type</a>} </li>
-</ol>
-</td></tr>
-<tr>
-<td width="20%"><code>coosig_name</code></td><td width="50%">Character array of coosig names</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a6eca729d3823689fab757e1a110b83f5">v3fit_input::coosig_name</a> </td></tr>
-<tr>
-<td width="20%"><code>coosig_units</code></td><td width="50%">Character array of coosig units</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a059ccffdc9f208514515adb5748adc9f">v3fit_input::coosig_units</a> </td></tr>
-<tr>
-<td width="20%"><code>coosig_wgts_id</code></td><td width="50%">Array of coosig_wgt indexs</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a424222ecade94f218e98e9fdc5597c8a">v3fit_input::coosig_wgts_id</a> </td></tr>
-</table>
-<h2><a class="anchor" id="plasma_off_sec"></a>
-Plasma Offset Section</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>phi_offset</code></td><td width="50%">Initial phi offset value to rotate the plasma relative to the diagnostics. This value is in radians.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a5d7e1c2eb69778d16585b8f80c0b8099">v3fit_input::phi_offset</a> </td></tr>
-<tr>
-<td width="20%"><code>z_offset</code></td><td width="50%">Initial z offset value to vertical shift plasma relative to the center. This value is in meters.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a741b415bdd48f62e633f18edcfba4767">v3fit_input::z_offset</a> </td></tr>
-</table>
-<h2><a class="anchor" id="recon_sec"></a>
-Reconstruction step control NLI variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>nrstep</code></td><td width="50%">max number of reconstruction steps to perform</td><td width="30%"><a class="el" href="namespacev3fit__input.html#adc0364b9f818950f73a6812862c2eb9c">v3fit_input::nrstep</a> </td></tr>
-<tr>
-<td width="20%"><code>dg2_stop</code></td><td width="50%">Stopping criterion on change in g^2</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a700dd5e62d58718bb23610ebd31e52d2">v3fit_input::dg2_stop</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_svd</code></td><td width="50%">cutoff value for relative Singular Values of the Jacobian</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad98c066d04c0f25696a91fed7d54e8ef">v3fit_input::cut_svd</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_eff</code></td><td width="50%">cutoff value for expected step efficiency</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a46af949ef5d76853b993d99767e542f1">v3fit_input::cut_eff</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_marg_eff</code></td><td width="50%">cutoff value for expected marginal step efficiency</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a059ccffdc9f208514515adb5748adc9f">v3fit_input::coosig_units</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_delta_a</code></td><td width="50%">cutoff value for expected step size</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a8aa4f835a2cf486c7567dacbc42da314">v3fit_input::cut_delta_a</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_dg2</code></td><td width="50%">cutoff value for expected change in g^2</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ab1dc0a024974864d287c68ebd3fa4dcb">v3fit_input::cut_dg2</a> </td></tr>
-<tr>
-<td width="20%"><code>astep_max</code></td><td width="50%">maximum allowable normalized step size</td><td width="30%"><a class="el" href="namespacev3fit__input.html#acb9417098adb81002267eb6a99f64562">v3fit_input::astep_max</a> </td></tr>
-<tr>
-<td width="20%"><code>step_type</code></td><td width="50%">character specification of reconstruction step type<ol type="1">
-<li><code>'sl'</code> - straight line</li>
-<li><code>'seg'</code> - segmented</li>
-<li><code>'lm'</code> - Levenberg-Marquardt</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">v3fit_input::step_type</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_inv_svd</code></td><td width="50%">Cut off value for the singular values used for the pseudo matrix inverse of the parameter covariance Matrix.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1f1769a20f19cc5bf06fc7384326f65b">v3fit_input::cut_inv_svd</a> </td></tr>
-<tr>
-<td width="20%"><code>cut_comp_svd</code></td><td width="50%">cutoff value for the energy deficit in the number of singular values to keep for the magnet response function data compression. Zero is no compression.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ad9aa4c21ac7f427d6467bea2c0d492dd">v3fit_input::cut_comp_svd</a> </td></tr>
-<tr>
-<td width="20%"><code>use_central_diff</code></td><td width="50%">Use central difference for the jacobian derivatives.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#ac89fb702d3a90ee7b9b20159ed912d82">v3fit_input::use_central_diff</a> </td></tr>
-</table>
-<h2><a class="anchor" id="int_sec"></a>
-Integration parameters</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>int_method</code></td><td width="50%">Method of integration.<ol type="1">
-<li><code>'add'</code> - Simple added integration.</li>
-<li><code>'gleg'</code> - Gauss Legendre Quadrature.</li>
-<li><code>'hp_glep'</code> - hp Guass-Legendre quadrature.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a90fc95d90dface3a816634e091b7d0c3">v3fit_input::int_method</a> </td></tr>
-<tr>
-<td width="20%"><code>int_num_points</code></td><td width="50%">Sets number of nodes to use for the Gauss-legendre integration.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a1b604b7bf86240e95222db1c854b0aee">v3fit_input::int_num_points</a> </td></tr>
-<tr>
-<td width="20%"><code>int_size</code></td><td width="50%">Sets the integration step size.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a21885f2c19e871826a9de0b86409479a">v3fit_input::int_size</a> </td></tr>
-</table>
-<h2><a class="anchor" id="xcdot_sec"></a>
-VMEC zero out xcdot control</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>l_zero_xcdot</code></td><td width="50%">Reset the xcdot array to zero when converging vmec. Zeroing of the xcdot array is hardcoded. <b>DEPRECATED</b> <b></b> </td><td width="30%"><p class="starttd"><a class="el" href="namespacev3fit__input.html#a3516a594cb5e51020f4aa30ef8e20aa4">v3fit_input::l_zero_xcdot</a></p>
-<p class="endtd"></p>
-</td></tr>
-</table>
-<h1><a class="anchor" id="namelist_exam_sec"></a>
-Example Files</h1>
-<h2><a class="anchor" id="namelist_exam_v3post_sec"></a>
-V3POST Example</h2>
-<div class="fragment"><div class="line"><span class="comment">! Example V3POST input file.</span></div>
-<div class="line">&amp;v3fit_main_nli</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Equilibrium to use.</span></div>
-<div class="line">vmec_nli_filename = <span class="stringliteral">&#39;input.example.vmec&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Diagnostic inout files.</span></div>
-<div class="line">mdsig_list_file = <span class="stringliteral">&#39;diagnostic.example_mdsig.LIST&#39;</span></div>
-<div class="line"> </div>
-<div class="line">my_task = <span class="stringliteral">&#39;v3post&#39;</span></div>
-<div class="line">/</div>
-</div><!-- fragment --> <h2><a class="anchor" id="namelist_exam_reconstruction_sec"></a>
-Reconstruction Example</h2>
-<div class="fragment"><div class="line"><span class="comment">! Example Reconstruction input file.</span></div>
-<div class="line">&amp;v3fit_main_nli</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Equilibrium to use.</span></div>
-<div class="line">vmec_nli_filename = <span class="stringliteral">&#39;input.example.vmec&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Diagnostic inout files.</span></div>
-<div class="line">mdsig_list_file = <span class="stringliteral">&#39;diagnostic.example_mdsig.LIST&#39;</span></div>
-<div class="line">sxrch_dot_filename = <span class="stringliteral">&#39;sxrch.example&#39;</span></div>
-<div class="line">thscte_dot_filename = <span class="stringliteral">&#39;thscte.example&#39;</span></div>
-<div class="line"> </div>
-<div class="line">my_task = <span class="stringliteral">&#39;reconstruct&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Model Specification</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Electron Density</span></div>
-<div class="line">pp_ne_ptype = <span class="stringliteral">&#39;two_power&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! b(0) + b(1)*[1 - s^b(2)]^b(3)</span></div>
-<div class="line">pp_ne_b(0:3) = 0.0, 1.0, 5.0, 10.0</div>
-<div class="line">ne_pp_unit = 1.0e18</div>
-<div class="line">e_pressure_fraction=0.75</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Soft X-ray emissivity</span></div>
-<div class="line">num_sxrem_p = 1</div>
-<div class="line">model_sxrem_type_a(1) = <span class="stringliteral">&#39;pp_sxrem&#39;</span></div>
-<div class="line">pp_sxrem_ptype_a(1) = <span class="stringliteral">&#39;two_power&#39;</span></div>
-<div class="line"> </div>
-<div class="line">pp_sxrem_b_a(1,0:3) = 0.0, 1.0, 3.0, 10.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Electron Temperature</span></div>
-<div class="line">model_te_type = <span class="stringliteral">&#39;pp_ne_vmec_p&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Reconstruction control parameters.</span></div>
-<div class="line">nrstep = 20</div>
-<div class="line">dg2_stop = 0.1</div>
-<div class="line">cut_svd = 0.002</div>
-<div class="line">cut_eff = 0.1</div>
-<div class="line">cut_marg_eff = 0.0</div>
-<div class="line">cut_delta_a = 0.0</div>
-<div class="line">cut_dg2 = 0.0</div>
-<div class="line">astep_max = 100.0</div>
-<div class="line">step_type = <span class="stringliteral">&#39;lm&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Reconstruction parameters</span></div>
-<div class="line">n_rp = 5</div>
-<div class="line"> </div>
-<div class="line">rp_type(1) = <span class="stringliteral">&#39;phiedge&#39;</span></div>
-<div class="line">rp_vrnc(1) = 1.e-04</div>
-<div class="line"> </div>
-<div class="line">rp_type(2) = <span class="stringliteral">&#39;ac&#39;</span></div>
-<div class="line">rp_index(2) = 1</div>
-<div class="line">rp_vrnc(2) = 0.01</div>
-<div class="line"> </div>
-<div class="line">rp_type(3) = <span class="stringliteral">&#39;pres_scale&#39;</span></div>
-<div class="line">rp_vrnc(3) = 50.</div>
-<div class="line"> </div>
-<div class="line">rp_type(4)=<span class="stringliteral">&#39;pp_ne_b&#39;</span></div>
-<div class="line">rp_index(4)=1</div>
-<div class="line">rp_vrnc(4)=0.2</div>
-<div class="line"> </div>
-<div class="line">rp_type(5)=<span class="stringliteral">&#39;pp_ne_b&#39;</span></div>
-<div class="line">rp_index(5)=2</div>
-<div class="line">rp_vrnc(5)=0.04</div>
-<div class="line"> </div>
-<div class="line">rp_type(5)=<span class="stringliteral">&#39;pp_sxrem_b&#39;</span></div>
-<div class="line">rp_index(5)=1</div>
-<div class="line">rp_vrnc(5)=0.1</div>
-<div class="line"> </div>
-<div class="line">rp_type(6)=<span class="stringliteral">&#39;pp_sxrem_b&#39;</span></div>
-<div class="line">rp_index(6)=2</div>
-<div class="line">rp_vrnc(6)=0.1</div>
-<div class="line"> </div>
-<div class="line">rp_type(7)=<span class="stringliteral">&#39;pp_sxrem_b&#39;</span></div>
-<div class="line">rp_index(7)=3</div>
-<div class="line">rp_vrnc(7)=0.1</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Limiter_iso Functions</span></div>
-<div class="line">n_lif = 2</div>
-<div class="line"> </div>
-<div class="line">n_phi_lif(1) = 1</div>
-<div class="line">lif_rc(1) = 0.7493</div>
-<div class="line">lif_on_edge(1) = t</div>
-<div class="line">lif_sigma(1) = 0.001</div>
-<div class="line">lif_arz(1,0,0) = -0.06002,</div>
-<div class="line">lif_arz(1,2,0) = 1.0,</div>
-<div class="line">lif_arz(1,0,2) = 1.0,</div>
-<div class="line">lif_phi_degree(1,1) = 12.0,</div>
-<div class="line"> </div>
-<div class="line">n_phi_lif(2) = 1</div>
-<div class="line">lif_rc(2) = 0.7493</div>
-<div class="line">lif_on_edge(2) = t</div>
-<div class="line">lif_arz(2,0,0) = -0.0618,</div>
-<div class="line">lif_arz(2,2,0) = 1.0,</div>
-<div class="line">lif_arz(2,0,2) = 1.0,</div>
-<div class="line">lif_phi_degree(2,1) = 60.0,</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Signal Weight specification - set weights for coosig parts to zero</span></div>
-<div class="line">sdo_w_spec_imin = 12 16 173 174</div>
-<div class="line">sdo_w_spec_imax = 12 16 173 174</div>
-<div class="line">sdo_w_spec_weight = 0. 0. 0. 0.</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Combination Of Other SIGnals (COOSIG)</span></div>
-<div class="line">n_coosig = 2</div>
-<div class="line"> </div>
-<div class="line">coosig_type(1) = <span class="stringliteral">&#39;sum&#39;</span>     <span class="comment">! Linear combination, to simulate a compensated diamagnetic loop</span></div>
-<div class="line">coosig_indices(1,1)=12     <span class="comment">!  Here I use the two bad signals, that already have their</span></div>
-<div class="line">coosig_indices(1,2)=16     <span class="comment">!  weights set to zero</span></div>
-<div class="line">coosig_coeff(1,1)=.389976  <span class="comment">!  Set to make zero signal, using *e model values</span></div>
-<div class="line">coosig_coeff(1,2)=-.850293</div>
-<div class="line">coosig_name(1) = <span class="stringliteral">&#39;simCompDiaLoop&#39;</span></div>
-<div class="line">coosig_units(1) = <span class="stringliteral">&#39;?&#39;</span></div>
-<div class="line"> </div>
-<div class="line">coosig_type(2) = <span class="stringliteral">&#39;max&#39;</span>     <span class="comment">! Maximum, for use with edge limits</span></div>
-<div class="line">coosig_indices(2,1)=173     <span class="comment">! Signal numbers for the two edge limits</span></div>
-<div class="line">coosig_indices(2,2)=174</div>
-<div class="line">coosig_coeff(2,1)=1        <span class="comment">! No scaling of the relative signals before the max</span></div>
-<div class="line">coosig_coeff(2,2)=1</div>
-<div class="line">coosig_name(2) = <span class="stringliteral">&#39;OneLimiter&#39;</span></div>
-<div class="line">coosig_units(2) = <span class="stringliteral">&#39;m&#39;</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Observed Data - magnetic diagnostics</span></div>
-<div class="line">n_sdata_o = 25</div>
-<div class="line">sdo_data_a(1)= 0.099877    sdo_sigma_a(1)=0.00177   <span class="comment">!  First Magnetic Diagnostics</span></div>
-<div class="line">sdo_data_a(2)= 0.170352    sdo_sigma_a(2)=0.00177</div>
-<div class="line">snip - boring observations</div>
-<div class="line">sdo_data_a(25)= 0.031115   sdo_sigma_a(25)=0.00007   <span class="comment">! Last Magnetic Diagnostic</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Observed data for the soft x-ray chords</span></div>
-<div class="line"><span class="comment">! Simulated data, see Excel &quot;Simulated Observations 2011-10-26&quot;</span></div>
-<div class="line">n_sdata_o = 125</div>
-<div class="line">sdo_s_spec_imin(1) = 26</div>
-<div class="line">sdo_s_spec_imax(1) = 125</div>
-<div class="line">sdo_s_spec_floor(1) = 1.</div>
-<div class="line">sdo_s_spec_fraction(1) = 0.05</div>
-<div class="line"> </div>
-<div class="line">sdo_data_a(26) = 6.09338e+01      <span class="comment">! sxr  1</span></div>
-<div class="line">snip - boring simulated obserations</div>
-<div class="line">sdo_data_a(125) =7.88700e+00       <span class="comment">! sxr100</span></div>
-<div class="line"> </div>
-<div class="line"><span class="comment">! Observed data for the Thomson Scattering points</span></div>
-<div class="line"><span class="comment">! Simulated data, see Excel &quot;Simulated Observations 2011-10-26&quot;</span></div>
-<div class="line">n_sdata_o = 174</div>
-<div class="line">sdo_s_spec_imin(2) = 126</div>
-<div class="line">sdo_s_spec_imax(2) = 172</div>
-<div class="line">sdo_s_spec_floor(2) = 1.</div>
-<div class="line">sdo_s_spec_fraction(2) = 0.05</div>
-<div class="line">sdo_w_spec_imin(5) = 126</div>
-<div class="line">sdo_w_spec_imax(5) = 172</div>
-<div class="line">sdo_w_spec_weight(5) = 0.</div>
-<div class="line"> </div>
-<div class="line">sdo_data_a(126) = 6.82686e+00    <span class="comment">! thscte</span></div>
-<div class="line">snip - boring simulated observations</div>
-<div class="line">sdo_data_a(170) = 1.10650e+00    <span class="comment">! thscte</span></div>
-<div class="line">sdo_data_a(171) = 2.26904e+00    <span class="comment">! thscte</span></div>
-<div class="line">sdo_data_a(172) = 3.86471e+00    <span class="comment">! thscte</span></div>
-<div class="line">sdo_data_a(173)= 0.000000   sdo_sigma_a(173)=0.00100  <span class="comment">!  Limiter</span></div>
-<div class="line">sdo_data_a(174)= 0.000000   sdo_sigma_a(174)=0.00100</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  Add on observations for the COOSIGs</span></div>
-<div class="line">n_sdata_o = 176</div>
-<div class="line">sdo_data_a(175) = 0.        <span class="comment">!  &#39;simCompDiaLoop&#39;, coosig_coeff set to make signal zero</span></div>
-<div class="line">sdo_sigma_a(175) = 1.5e-03</div>
-<div class="line">sdo_data_a(176) = 0.        <span class="comment">!  &#39;OneLimiter&#39;, signal should be zero</span></div>
-<div class="line">sdo_sigma_a(176) = 0.001    <span class="comment">!   1 mm</span></div>
-<div class="line">/</div>
-</div><!-- fragment --><h1><a class="anchor" id="namelist_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement this namelist is found in the <a class="el" href="namespacev3fit__input.html">v3fit_input</a> module. </p>
-</div></div><!-- contents -->
-</div><!-- PageDoc -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
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-
-<p>This modules contains routines for interpolating points inside a grid. This was originally written by S. P. Hirshman. It has been modified for thread safety converting it to be object oriented by M. Cianciosa.  
-<a href="namespacebivariate.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">An object containing persistent data for the bivariate interpolation.  <a href="structbivariate_1_1bivariate__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a5f86038c03b5d3c99b7f2d87a2c709bb"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebivariate.html#a5f86038c03b5d3c99b7f2d87a2c709bb">bivariate_construct</a> (ns, nu)</td></tr>
-<tr class="memdesc:a5f86038c03b5d3c99b7f2d87a2c709bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a bivariate_type object.  <a href="namespacebivariate.html#a5f86038c03b5d3c99b7f2d87a2c709bb">More...</a><br /></td></tr>
-<tr class="separator:a5f86038c03b5d3c99b7f2d87a2c709bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac365c981828b3c0a9344226807d341f3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebivariate.html#ac365c981828b3c0a9344226807d341f3">bivariate_destruct</a> (this)</td></tr>
-<tr class="memdesc:ac365c981828b3c0a9344226807d341f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a bivariate_type object.  <a href="namespacebivariate.html#ac365c981828b3c0a9344226807d341f3">More...</a><br /></td></tr>
-<tr class="separator:ac365c981828b3c0a9344226807d341f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb46db05deed3d3d4a4c78ca72ccca6e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebivariate.html#aeb46db05deed3d3d4a4c78ca72ccca6e">bivariate_set_grids_2d</a> (this, rsu, zsu, rgrid, zgrid)</td></tr>
-<tr class="memdesc:aeb46db05deed3d3d4a4c78ca72ccca6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set up the interpolation grid for a phi plane.  <a href="namespacebivariate.html#aeb46db05deed3d3d4a4c78ca72ccca6e">More...</a><br /></td></tr>
-<tr class="separator:aeb46db05deed3d3d4a4c78ca72ccca6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adbbf8d4b61b5ab496b658d804223947e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebivariate.html#adbbf8d4b61b5ab496b658d804223947e">bivariate_set_grids_1d</a> (this, rsu, zsu, rgrid, zgrid)</td></tr>
-<tr class="memdesc:adbbf8d4b61b5ab496b658d804223947e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set up the interpolation grid for a phi plane.  <a href="namespacebivariate.html#adbbf8d4b61b5ab496b658d804223947e">More...</a><br /></td></tr>
-<tr class="separator:adbbf8d4b61b5ab496b658d804223947e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2eacc53209204cd912a2a898025863b6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebivariate.html#a2eacc53209204cd912a2a898025863b6">bivariate_get_4pt</a> (this, resp_rz, resp_su)</td></tr>
-<tr class="memdesc:a2eacc53209204cd912a2a898025863b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate points on to response function grid.  <a href="namespacebivariate.html#a2eacc53209204cd912a2a898025863b6">More...</a><br /></td></tr>
-<tr class="separator:a2eacc53209204cd912a2a898025863b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This modules contains routines for interpolating points inside a grid. This was originally written by S. P. Hirshman. It has been modified for thread safety converting it to be object oriented by M. Cianciosa. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a5f86038c03b5d3c99b7f2d87a2c709bb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5f86038c03b5d3c99b7f2d87a2c709bb">&#9670;&nbsp;</a></span>bivariate_construct()</h2>
-
-<div class="memitem">
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-          <td class="memname">class (<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>) function, pointer bivariate::bivariate_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ns</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nu</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a bivariate_type object. </p>
-<p>Allocates memory and initializes a bivariate_type object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ns</td><td>Number of radial grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nu</td><td>Number of poloidal grid points. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed bivariate_type object. </dd></dl>
-
-</div>
-</div>
-<a id="ac365c981828b3c0a9344226807d341f3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac365c981828b3c0a9344226807d341f3">&#9670;&nbsp;</a></span>bivariate_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bivariate::bivariate_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a bivariate_type object. </p>
-<p>Deallocates memory and uninitializes a bivariate_type object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A bivariate_type instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2eacc53209204cd912a2a898025863b6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2eacc53209204cd912a2a898025863b6">&#9670;&nbsp;</a></span>bivariate_get_4pt()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bivariate::bivariate_get_4pt </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(this%nrz), intent(in)&#160;</td>
-          <td class="paramname"><em>resp_rz</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(this%nsu), intent(out)&#160;</td>
-          <td class="paramname"><em>resp_su</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate points on to response function grid. </p>
-<p>Determin response function on the s,u grid by 4 point bivariate interpolation of response function on the r,z mesh at a fixed toroidal plane. This uses a 2-D interpolation based on the four point formula in Abramowitz and Stegun, Eq. 25.2.66. Note that the arrays need an explicit size in dimension to allow the 2D arrays to be passed to the 1D arguments.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A bivariate_type instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">resp_rz</td><td>Response function on the rz grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">resp_su</td><td>Response function on the su grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adbbf8d4b61b5ab496b658d804223947e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adbbf8d4b61b5ab496b658d804223947e">&#9670;&nbsp;</a></span>bivariate_set_grids_1d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bivariate::bivariate_set_grids_1d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>rsu</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>zsu</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>rgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>zgrid</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set up the interpolation grid for a phi plane. </p>
-<p>Compute the indices (ir_bi, jz_bi) and weight factors (wij_bi) for performing bivariate (4 pt) interpolation FROM a rectangular (R X Z) grid TO a general (non-orthogonal) grid (s, u). R and Z grids may have different mesh sizes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A bivariate_type instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rsu</td><td>r coordinate at s,u </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zsu</td><td>z coordinate at s,u </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rgrid</td><td>R coordinate on a fixed, equally spaced grid </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zgrid</td><td>Z coordinate on a fixed, equally spaced grid </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aeb46db05deed3d3d4a4c78ca72ccca6e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeb46db05deed3d3d4a4c78ca72ccca6e">&#9670;&nbsp;</a></span>bivariate_set_grids_2d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bivariate::bivariate_set_grids_2d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbivariate_1_1bivariate__class.html">bivariate_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rsu</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>zsu</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>rgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>zgrid</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set up the interpolation grid for a phi plane. </p>
-<p>Compute the indices (ir_bi, jz_bi) and weight factors (wij_bi) for performing bivariate (4 pt) interpolation FROM a rectangular (R X Z) grid TO a general (non-orthogonal) grid (s, u). R and Z grids may have different mesh sizes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A bivariate_type instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rsu</td><td>r coordinate at s,u </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zsu</td><td>z coordinate at s,u </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rgrid</td><td>R coordinate on a fixed, equally spaced grid </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zgrid</td><td>Z coordinate on a fixed, equally spaced grid </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-</div>
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-<p>Solver for block tri-diagonal matrices. [Kalyan S. Perumalla, ORNL, 2009-2011].  
-<a href="namespaceblocktridiagonalsolver.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solution of selected rows of interest to this rank.  <a href="structblocktridiagonalsolver_1_1solutionelement.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structblocktridiagonalsolver_1_1blacsparameters.html">blacsparameters</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">BLACS/PBLAS information.  <a href="structblocktridiagonalsolver_1_1blacsparameters.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structblocktridiagonalsolver_1_1mastertoslavemapping.html">mastertoslavemapping</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Master-to-slave mapping.  <a href="structblocktridiagonalsolver_1_1mastertoslavemapping.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structblocktridiagonalsolver_1_1pblaslevelparameters.html">pblaslevelparameters</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Level-specific PBLAS information.  <a href="structblocktridiagonalsolver_1_1pblaslevelparameters.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structblocktridiagonalsolver_1_1timecount.html">timecount</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Statistics (timing, etc.)  <a href="structblocktridiagonalsolver_1_1timecount.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structblocktridiagonalsolver_1_1pblasstats.html">pblasstats</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a14a13522456670c350261d6794295719"><td class="memItemLeft" align="right" valign="top"><a id="a14a13522456670c350261d6794295719"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a14a13522456670c350261d6794295719">bclockinit</a> ()</td></tr>
-<tr class="memdesc:a14a13522456670c350261d6794295719"><td class="mdescLeft">&#160;</td><td class="mdescRight">A convenience function to be able to change clock routine(s) easily. <br /></td></tr>
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-<tr class="memitem:a19ca39bad842087e9250d7fb892f6edf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a19ca39bad842087e9250d7fb892f6edf">bsystemclock</a> (ts)</td></tr>
-<tr class="memdesc:a19ca39bad842087e9250d7fb892f6edf"><td class="mdescLeft">&#160;</td><td class="mdescRight">A convenience function to be able to change clock routine easily.  <a href="namespaceblocktridiagonalsolver.html#a19ca39bad842087e9250d7fb892f6edf">More...</a><br /></td></tr>
-<tr class="separator:a19ca39bad842087e9250d7fb892f6edf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5d364baaf41b6def1c0ab05459036a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ac5d364baaf41b6def1c0ab05459036a6">fl</a> (u)</td></tr>
-<tr class="memdesc:ac5d364baaf41b6def1c0ab05459036a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">A convenience function to be able to change or turn off easily.  <a href="namespaceblocktridiagonalsolver.html#ac5d364baaf41b6def1c0ab05459036a6">More...</a><br /></td></tr>
-<tr class="separator:ac5d364baaf41b6def1c0ab05459036a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a683f95d8070ea95b23d756360f794cdd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a683f95d8070ea95b23d756360f794cdd">chargememory</a> (bytes)</td></tr>
-<tr class="memdesc:a683f95d8070ea95b23d756360f794cdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience routine to track allocated memory sizes.  <a href="namespaceblocktridiagonalsolver.html#a683f95d8070ea95b23d756360f794cdd">More...</a><br /></td></tr>
-<tr class="separator:a683f95d8070ea95b23d756360f794cdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65305beda9eda026c78791b27d340bfe"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a65305beda9eda026c78791b27d340bfe">chargetime</a> (tot, t2, t1, cnt)</td></tr>
-<tr class="memdesc:a65305beda9eda026c78791b27d340bfe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience routine to accumulate timing values.  <a href="namespaceblocktridiagonalsolver.html#a65305beda9eda026c78791b27d340bfe">More...</a><br /></td></tr>
-<tr class="separator:a65305beda9eda026c78791b27d340bfe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af61a70927de3a83b37424b8e60a795cd"><td class="memItemLeft" align="right" valign="top"><a id="af61a70927de3a83b37424b8e60a795cd"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#af61a70927de3a83b37424b8e60a795cd">timecountinit</a> (tc)</td></tr>
-<tr class="memdesc:af61a70927de3a83b37424b8e60a795cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize stats. <br /></td></tr>
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-<tr class="memitem:af5dc3933d8ff5ace49198e76c11b87cc"><td class="memItemLeft" align="right" valign="top"><a id="af5dc3933d8ff5ace49198e76c11b87cc"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#af5dc3933d8ff5ace49198e76c11b87cc">timecountprint</a> (tc, msg)</td></tr>
-<tr class="memdesc:af5dc3933d8ff5ace49198e76c11b87cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print stats. <br /></td></tr>
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-<tr class="memitem:a5a79e9fa69f69dd8e4426a213a31ea5e"><td class="memItemLeft" align="right" valign="top"><a id="a5a79e9fa69f69dd8e4426a213a31ea5e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a5a79e9fa69f69dd8e4426a213a31ea5e">plbinitstats</a> ()</td></tr>
-<tr class="memdesc:a5a79e9fa69f69dd8e4426a213a31ea5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Init statistics. <br /></td></tr>
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-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a6f4b6c2515dcc013531ac4679a35f141">plbprintstats</a> ()</td></tr>
-<tr class="memdesc:a6f4b6c2515dcc013531ac4679a35f141"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print statistics so far. <br /></td></tr>
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-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aea6750b0667981e5083bfba9e1bc604a">plbinitialize</a></td></tr>
-<tr class="memdesc:aea6750b0667981e5083bfba9e1bc604a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize before foward or backward starts. <br /></td></tr>
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-<tr class="memitem:acd615113f87e4211f234e5f866f7b92a"><td class="memItemLeft" align="right" valign="top"><a id="acd615113f87e4211f234e5f866f7b92a"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#acd615113f87e4211f234e5f866f7b92a">plbfinalize</a></td></tr>
-<tr class="memdesc:acd615113f87e4211f234e5f866f7b92a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalize after foward or backward are done. <br /></td></tr>
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-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a46603eb1d821e5edb1f5173ef00aa95a">plbforwardinitialize</a></td></tr>
-<tr class="memdesc:a46603eb1d821e5edb1f5173ef00aa95a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize before any forward level starts. <br /></td></tr>
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-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ab401ff13703ef5fc0f698682ed90511e">plbforwardfinalize</a></td></tr>
-<tr class="memdesc:ab401ff13703ef5fc0f698682ed90511e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalize after all forward levels are done. <br /></td></tr>
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-<tr class="memitem:a93d3db81b9b6f538c140763e12a1500e"><td class="memItemLeft" align="right" valign="top"><a id="a93d3db81b9b6f538c140763e12a1500e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a93d3db81b9b6f538c140763e12a1500e">plbbackwardinitialize</a></td></tr>
-<tr class="memdesc:a93d3db81b9b6f538c140763e12a1500e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize before any backward level starts. <br /></td></tr>
-<tr class="separator:a93d3db81b9b6f538c140763e12a1500e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a92b34972ff92aa1575bfd29ea02545a8">plbbackwardfinalize</a></td></tr>
-<tr class="memdesc:a92b34972ff92aa1575bfd29ea02545a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalize after all backward levels are done. <br /></td></tr>
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-<tr class="memitem:a269e327d8e5f72355ff1af1b1c5ba134"><td class="memItemLeft" align="right" valign="top"><a id="a269e327d8e5f72355ff1af1b1c5ba134"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a269e327d8e5f72355ff1af1b1c5ba134">plbforwardinitializelevel</a> (lvl, ammaster)</td></tr>
-<tr class="memdesc:a269e327d8e5f72355ff1af1b1c5ba134"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize before the forward solve at a given level starts. <br /></td></tr>
-<tr class="separator:a269e327d8e5f72355ff1af1b1c5ba134"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8412046fe136c05e9a2591a2e66983d"><td class="memItemLeft" align="right" valign="top"><a id="ae8412046fe136c05e9a2591a2e66983d"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ae8412046fe136c05e9a2591a2e66983d">plbforwardfinalizelevel</a> (lvl, ammaster)</td></tr>
-<tr class="memdesc:ae8412046fe136c05e9a2591a2e66983d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalize after the forward solve at a given level ends. <br /></td></tr>
-<tr class="separator:ae8412046fe136c05e9a2591a2e66983d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaa1bf7577b6b839c5ca3bd53448e20c9"><td class="memItemLeft" align="right" valign="top"><a id="aaa1bf7577b6b839c5ca3bd53448e20c9"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aaa1bf7577b6b839c5ca3bd53448e20c9">plbbackwardinitializelevel</a> (lvl, ammaster)</td></tr>
-<tr class="memdesc:aaa1bf7577b6b839c5ca3bd53448e20c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize before the backward solve at a given level starts. <br /></td></tr>
-<tr class="separator:aaa1bf7577b6b839c5ca3bd53448e20c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a06d65d59e4353efb784d939f93ceb470"><td class="memItemLeft" align="right" valign="top"><a id="a06d65d59e4353efb784d939f93ceb470"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a06d65d59e4353efb784d939f93ceb470">plbbackwardfinalizelevel</a> (lvl, ammaster)</td></tr>
-<tr class="memdesc:a06d65d59e4353efb784d939f93ceb470"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalize after the backward solve at a given level ends. <br /></td></tr>
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-<tr class="memitem:a68b9fd3655efde644e29f374bcae5c3f"><td class="memItemLeft" align="right" valign="top"><a id="a68b9fd3655efde644e29f374bcae5c3f"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a68b9fd3655efde644e29f374bcae5c3f">determinemasterslaveranks</a> ()</td></tr>
-<tr class="memdesc:a68b9fd3655efde644e29f374bcae5c3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determine the ranks of master and slaves at this level. <br /></td></tr>
-<tr class="separator:a68b9fd3655efde644e29f374bcae5c3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a55f846fad1393c6907320839f6ac58d8"><td class="memItemLeft" align="right" valign="top"><a id="a55f846fad1393c6907320839f6ac58d8"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a55f846fad1393c6907320839f6ac58d8">masterbcastnextop</a> (nextop)</td></tr>
-<tr class="memdesc:a55f846fad1393c6907320839f6ac58d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inform the next operation to be done (calling rank is in master mode) <br /></td></tr>
-<tr class="separator:a55f846fad1393c6907320839f6ac58d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a810b66fe20ac19ecb60ad5cb69fffc55"><td class="memItemLeft" align="right" valign="top"><a id="a810b66fe20ac19ecb60ad5cb69fffc55"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a810b66fe20ac19ecb60ad5cb69fffc55">slavegetnextop</a> (nextop)</td></tr>
-<tr class="memdesc:a810b66fe20ac19ecb60ad5cb69fffc55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determine the next operation to be done (calling rank is in slave mode) <br /></td></tr>
-<tr class="separator:a810b66fe20ac19ecb60ad5cb69fffc55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a349b2b95e02c0666aae873e0fe6a1d31"><td class="memItemLeft" align="right" valign="top"><a id="a349b2b95e02c0666aae873e0fe6a1d31"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a349b2b95e02c0666aae873e0fe6a1d31">slaveservice</a> ()</td></tr>
-<tr class="memdesc:a349b2b95e02c0666aae873e0fe6a1d31"><td class="mdescLeft">&#160;</td><td class="mdescRight">Slave's operation loop. <br /></td></tr>
-<tr class="separator:a349b2b95e02c0666aae873e0fe6a1d31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aef94ff60b14016eb580d9873bf41cfeb"><td class="memItemLeft" align="right" valign="top"><a id="aef94ff60b14016eb580d9873bf41cfeb"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aef94ff60b14016eb580d9873bf41cfeb">extractsubmatrix</a> (bszr, bszc, pnr, pnc, pi, pj, A, nrows, ncols, subA, subnrows, subncols)</td></tr>
-<tr class="memdesc:aef94ff60b14016eb580d9873bf41cfeb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Extracts from A the submatrix corresponding to process-grid element (pi,pj) <br /></td></tr>
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-<tr class="memitem:a4240cfb879a2d94b6fd5f48d973dac26"><td class="memItemLeft" align="right" valign="top"><a id="a4240cfb879a2d94b6fd5f48d973dac26"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a4240cfb879a2d94b6fd5f48d973dac26">mastersendmatrix</a> (A, nrows, ncols, ssubA, ssubnrows, ssubncols)</td></tr>
-<tr class="memdesc:a4240cfb879a2d94b6fd5f48d973dac26"><td class="mdescLeft">&#160;</td><td class="mdescRight">Send the matrix by master (caller) to all slaves The submatrix belonging to the caller (master is also one of the slaves) is returned in the ssub* arguments (i.e., sent to self) <br /></td></tr>
-<tr class="separator:a4240cfb879a2d94b6fd5f48d973dac26"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61990d564e45776343ea6b18264c57bd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a61990d564e45776343ea6b18264c57bd">slavereceivematrix</a> (nrows, ncols, subA, subnrows, subncols)</td></tr>
-<tr class="memdesc:a61990d564e45776343ea6b18264c57bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receive the fragment of matrix sent by master to slave (caller)  <a href="namespaceblocktridiagonalsolver.html#a61990d564e45776343ea6b18264c57bd">More...</a><br /></td></tr>
-<tr class="separator:a61990d564e45776343ea6b18264c57bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61b855104f575b40571b7c019c92e6b7"><td class="memItemLeft" align="right" valign="top"><a id="a61b855104f575b40571b7c019c92e6b7"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a61b855104f575b40571b7c019c92e6b7">masterbcastvalue</a> (val)</td></tr>
-<tr class="memdesc:a61b855104f575b40571b7c019c92e6b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Send the given value by master (caller) to all slaves. <br /></td></tr>
-<tr class="separator:a61b855104f575b40571b7c019c92e6b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:add37d98c9fd09ce4af1982d72171bb49"><td class="memItemLeft" align="right" valign="top"><a id="add37d98c9fd09ce4af1982d72171bb49"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#add37d98c9fd09ce4af1982d72171bb49">slavereceivevalue</a> (val)</td></tr>
-<tr class="memdesc:add37d98c9fd09ce4af1982d72171bb49"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receive a value sent by master to slave (caller) <br /></td></tr>
-<tr class="separator:add37d98c9fd09ce4af1982d72171bb49"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15bbcfd3937f025f6756fdeed5cc9936"><td class="memItemLeft" align="right" valign="top"><a id="a15bbcfd3937f025f6756fdeed5cc9936"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a15bbcfd3937f025f6756fdeed5cc9936">injectsubmatrix</a> (bszr, bszc, pnr, pnc, pi, pj, A, nrows, ncols, subA, subnrows, subncols)</td></tr>
-<tr class="memdesc:a15bbcfd3937f025f6756fdeed5cc9936"><td class="mdescLeft">&#160;</td><td class="mdescRight">Incorporates into A the submatrix corresp. to process-grid element (pi,pj) <br /></td></tr>
-<tr class="separator:a15bbcfd3937f025f6756fdeed5cc9936"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab1111c4d0ea313add71ca5bba9017555"><td class="memItemLeft" align="right" valign="top"><a id="ab1111c4d0ea313add71ca5bba9017555"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ab1111c4d0ea313add71ca5bba9017555">injectsubvector</a> (bszr, pnr, pi, V, nrows, subV, subnrows)</td></tr>
-<tr class="memdesc:ab1111c4d0ea313add71ca5bba9017555"><td class="mdescLeft">&#160;</td><td class="mdescRight">Incorporates into V the subvector corresp. to process-grid element (pi,0) <br /></td></tr>
-<tr class="separator:ab1111c4d0ea313add71ca5bba9017555"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaefdf6844d7246b92cfa10df6215f08e"><td class="memItemLeft" align="right" valign="top"><a id="aaefdf6844d7246b92cfa10df6215f08e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aaefdf6844d7246b92cfa10df6215f08e">masterrecvmatrix</a> (A, nrows, ncols, ssubA, ssubnrows, ssubncols)</td></tr>
-<tr class="memdesc:aaefdf6844d7246b92cfa10df6215f08e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receive the submatrices by master (caller) from all slaves The submatrix belonging to the caller (master is also one of the slaves) is given in the ssub* arguments (i.e., received from self) <br /></td></tr>
-<tr class="separator:aaefdf6844d7246b92cfa10df6215f08e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adeae9a542ea1c402b75ab25df9bffecd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#adeae9a542ea1c402b75ab25df9bffecd">slavesendmatrix</a> (nrows, ncols, subA, subnrows, subncols)</td></tr>
-<tr class="memdesc:adeae9a542ea1c402b75ab25df9bffecd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Send the fragment of matrix by slave (caller) to master.  <a href="namespaceblocktridiagonalsolver.html#adeae9a542ea1c402b75ab25df9bffecd">More...</a><br /></td></tr>
-<tr class="separator:adeae9a542ea1c402b75ab25df9bffecd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ac3288f9d10057860424414c219adf2"><td class="memItemLeft" align="right" valign="top"><a id="a5ac3288f9d10057860424414c219adf2"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a5ac3288f9d10057860424414c219adf2">masterrecvvector</a> (V, nrows, ssubV, ssubnrows)</td></tr>
-<tr class="memdesc:a5ac3288f9d10057860424414c219adf2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receive the subvector by master (caller) from all slaves in column 1 of pgrid The subvector belonging to the caller (master is also one of the slaves) is given in the ssub* arguments (i.e., received from self) <br /></td></tr>
-<tr class="separator:a5ac3288f9d10057860424414c219adf2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a335496b154f599f24d175df560ca2427"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a335496b154f599f24d175df560ca2427">slavesendvector</a> (nrows, subV, subnrows)</td></tr>
-<tr class="memdesc:a335496b154f599f24d175df560ca2427"><td class="mdescLeft">&#160;</td><td class="mdescRight">Send the fragment of vector by slave (caller) to master Only slaves who belong to zero'th column of pgrid send to master Other slave simply do no-op for this routine.  <a href="namespaceblocktridiagonalsolver.html#a335496b154f599f24d175df560ca2427">More...</a><br /></td></tr>
-<tr class="separator:a335496b154f599f24d175df560ca2427"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a959011e6acc16fd55ca37a9424ace6d6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a959011e6acc16fd55ca37a9424ace6d6">plbdgemm</a> (alpha, A, B, beta, C)</td></tr>
-<tr class="memdesc:a959011e6acc16fd55ca37a9424ace6d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Encapsulates BLAS' DGEMM functionality.  <a href="namespaceblocktridiagonalsolver.html#a959011e6acc16fd55ca37a9424ace6d6">More...</a><br /></td></tr>
-<tr class="separator:a959011e6acc16fd55ca37a9424ace6d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af60e3498e613809ab7d64be615a5199f"><td class="memItemLeft" align="right" valign="top"><a id="af60e3498e613809ab7d64be615a5199f"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#af60e3498e613809ab7d64be615a5199f">slavedgemm</a> ()</td></tr>
-<tr class="memdesc:af60e3498e613809ab7d64be615a5199f"><td class="mdescLeft">&#160;</td><td class="mdescRight">DGEMM support from slave. <br /></td></tr>
-<tr class="separator:af60e3498e613809ab7d64be615a5199f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acf20e8973c04f1deda1e133503dbae75"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#acf20e8973c04f1deda1e133503dbae75">plbdgemv</a> (alpha, A, x, beta, y)</td></tr>
-<tr class="memdesc:acf20e8973c04f1deda1e133503dbae75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Encapsulates BLAS' DGEMV functionality.  <a href="namespaceblocktridiagonalsolver.html#acf20e8973c04f1deda1e133503dbae75">More...</a><br /></td></tr>
-<tr class="separator:acf20e8973c04f1deda1e133503dbae75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a14d77d7601d3279328604e2bc2a0cd6a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a14d77d7601d3279328604e2bc2a0cd6a">plbdgetrf</a> (A, piv, info)</td></tr>
-<tr class="memdesc:a14d77d7601d3279328604e2bc2a0cd6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Encapsulates BLAS/LAPACK's DGETRF functionality.  <a href="namespaceblocktridiagonalsolver.html#a14d77d7601d3279328604e2bc2a0cd6a">More...</a><br /></td></tr>
-<tr class="separator:a14d77d7601d3279328604e2bc2a0cd6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69a130f600c36b578283d554470281b0"><td class="memItemLeft" align="right" valign="top"><a id="a69a130f600c36b578283d554470281b0"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a69a130f600c36b578283d554470281b0">slavedgetrf</a> ()</td></tr>
-<tr class="memdesc:a69a130f600c36b578283d554470281b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">DGETRF support from slave. <br /></td></tr>
-<tr class="separator:a69a130f600c36b578283d554470281b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d4362f0f37ae0cb3ee3c1ffee56079c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a7d4362f0f37ae0cb3ee3c1ffee56079c">plbdgetrs</a> (nrhs, A, piv, B, info)</td></tr>
-<tr class="memdesc:a7d4362f0f37ae0cb3ee3c1ffee56079c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Encapsulates BLAS/LAPACK's DGETRS functionality.  <a href="namespaceblocktridiagonalsolver.html#a7d4362f0f37ae0cb3ee3c1ffee56079c">More...</a><br /></td></tr>
-<tr class="separator:a7d4362f0f37ae0cb3ee3c1ffee56079c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0c3721fec40f9d978411edbf72e625fb"><td class="memItemLeft" align="right" valign="top"><a id="a0c3721fec40f9d978411edbf72e625fb"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a0c3721fec40f9d978411edbf72e625fb">slavedgetrs</a> ()</td></tr>
-<tr class="memdesc:a0c3721fec40f9d978411edbf72e625fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">DGETRS support from slave. <br /></td></tr>
-<tr class="separator:a0c3721fec40f9d978411edbf72e625fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a72874b1c9150a6a6a3848acee89290c3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a72874b1c9150a6a6a3848acee89290c3">initialize</a> (do_mpiinit, inN, inM)</td></tr>
-<tr class="memdesc:a72874b1c9150a6a6a3848acee89290c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, by user.  <a href="namespaceblocktridiagonalsolver.html#a72874b1c9150a6a6a3848acee89290c3">More...</a><br /></td></tr>
-<tr class="separator:a72874b1c9150a6a6a3848acee89290c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2efb7f8c2047f2116aae4d81400e61e6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a2efb7f8c2047f2116aae4d81400e61e6">setmatrixrow</a> (globrow, L, D, U)</td></tr>
-<tr class="memdesc:a2efb7f8c2047f2116aae4d81400e61e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#a2efb7f8c2047f2116aae4d81400e61e6">More...</a><br /></td></tr>
-<tr class="separator:a2efb7f8c2047f2116aae4d81400e61e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa35772e1d64f33252129c4a9a41e6361"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aa35772e1d64f33252129c4a9a41e6361">setmatrixrowl</a> (globrow, L)</td></tr>
-<tr class="memdesc:aa35772e1d64f33252129c4a9a41e6361"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#aa35772e1d64f33252129c4a9a41e6361">More...</a><br /></td></tr>
-<tr class="separator:aa35772e1d64f33252129c4a9a41e6361"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ade6fb9a67a5f049a7c15e48d2ae395be"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ade6fb9a67a5f049a7c15e48d2ae395be">setmatrixrowd</a> (globrow, D)</td></tr>
-<tr class="memdesc:ade6fb9a67a5f049a7c15e48d2ae395be"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#ade6fb9a67a5f049a7c15e48d2ae395be">More...</a><br /></td></tr>
-<tr class="separator:ade6fb9a67a5f049a7c15e48d2ae395be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a36f1c1fd3512b7c00537e4ccfaa231eb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a36f1c1fd3512b7c00537e4ccfaa231eb">setmatrixrowu</a> (globrow, U)</td></tr>
-<tr class="memdesc:a36f1c1fd3512b7c00537e4ccfaa231eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#a36f1c1fd3512b7c00537e4ccfaa231eb">More...</a><br /></td></tr>
-<tr class="separator:a36f1c1fd3512b7c00537e4ccfaa231eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a766a2fc5191f1904880a2bbccb454e1e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a766a2fc5191f1904880a2bbccb454e1e">setmatrixrowcoll</a> (globrow, Lj, j)</td></tr>
-<tr class="memdesc:a766a2fc5191f1904880a2bbccb454e1e"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#a766a2fc5191f1904880a2bbccb454e1e">More...</a><br /></td></tr>
-<tr class="separator:a766a2fc5191f1904880a2bbccb454e1e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a7b69538e44eab479ca116763496c08"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a7a7b69538e44eab479ca116763496c08">setmatrixrowcold</a> (globrow, Dj, j)</td></tr>
-<tr class="memdesc:a7a7b69538e44eab479ca116763496c08"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#a7a7b69538e44eab479ca116763496c08">More...</a><br /></td></tr>
-<tr class="separator:a7a7b69538e44eab479ca116763496c08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac8cb7c5279d469fa193e51254089b2e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aac8cb7c5279d469fa193e51254089b2e">setmatrixrowcolu</a> (globrow, Uj, j)</td></tr>
-<tr class="memdesc:aac8cb7c5279d469fa193e51254089b2e"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#aac8cb7c5279d469fa193e51254089b2e">More...</a><br /></td></tr>
-<tr class="separator:aac8cb7c5279d469fa193e51254089b2e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a371c20d9d4ce0e6cf27a2a3200b78ab9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a371c20d9d4ce0e6cf27a2a3200b78ab9">setmatrixrhs</a> (globrow, b)</td></tr>
-<tr class="memdesc:a371c20d9d4ce0e6cf27a2a3200b78ab9"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver.html#a371c20d9d4ce0e6cf27a2a3200b78ab9">More...</a><br /></td></tr>
-<tr class="separator:a371c20d9d4ce0e6cf27a2a3200b78ab9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7b3db44d71b5d5bcd66165d8707af44e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a7b3db44d71b5d5bcd66165d8707af44e">getmatrixrowcoll</a> (globrow, Lj, j)</td></tr>
-<tr class="memdesc:a7b3db44d71b5d5bcd66165d8707af44e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver.html#a7b3db44d71b5d5bcd66165d8707af44e">More...</a><br /></td></tr>
-<tr class="separator:a7b3db44d71b5d5bcd66165d8707af44e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adeaee07ca4cd27d046df89fcfa5de420"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#adeaee07ca4cd27d046df89fcfa5de420">getmatrixrowcold</a> (globrow, Dj, j)</td></tr>
-<tr class="memdesc:adeaee07ca4cd27d046df89fcfa5de420"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver.html#adeaee07ca4cd27d046df89fcfa5de420">More...</a><br /></td></tr>
-<tr class="separator:adeaee07ca4cd27d046df89fcfa5de420"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69aff694f0b38b1222aff076e865e462"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a69aff694f0b38b1222aff076e865e462">getmatrixrowcolu</a> (globrow, Uj, j)</td></tr>
-<tr class="memdesc:a69aff694f0b38b1222aff076e865e462"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver.html#a69aff694f0b38b1222aff076e865e462">More...</a><br /></td></tr>
-<tr class="separator:a69aff694f0b38b1222aff076e865e462"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a36173028165c0704abd3c8fe1babd341"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a36173028165c0704abd3c8fe1babd341">getmatrixrhs</a> (globrow, b)</td></tr>
-<tr class="memdesc:a36173028165c0704abd3c8fe1babd341"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the RHS.  <a href="namespaceblocktridiagonalsolver.html#a36173028165c0704abd3c8fe1babd341">More...</a><br /></td></tr>
-<tr class="separator:a36173028165c0704abd3c8fe1babd341"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af752fb102d8f6a907aa050e2f259d198"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#af752fb102d8f6a907aa050e2f259d198">getsolutionvector</a> (globrow, x)</td></tr>
-<tr class="memdesc:af752fb102d8f6a907aa050e2f259d198"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, after solve, by user to get the solution vector of a local row.  <a href="namespaceblocktridiagonalsolver.html#af752fb102d8f6a907aa050e2f259d198">More...</a><br /></td></tr>
-<tr class="separator:af752fb102d8f6a907aa050e2f259d198"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a71041ed65bbdd0f0eec10afff8cdaa81"><td class="memItemLeft" align="right" valign="top"><a id="a71041ed65bbdd0f0eec10afff8cdaa81"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a71041ed65bbdd0f0eec10afff8cdaa81">setidentitytestcase</a></td></tr>
-<tr class="memdesc:a71041ed65bbdd0f0eec10afff8cdaa81"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to generate a test. <br /></td></tr>
-<tr class="separator:a71041ed65bbdd0f0eec10afff8cdaa81"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af28ad6d4b40f37322405a2bf9420c102"><td class="memItemLeft" align="right" valign="top"><a id="af28ad6d4b40f37322405a2bf9420c102"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#af28ad6d4b40f37322405a2bf9420c102">setidentityrhs</a></td></tr>
-<tr class="memdesc:af28ad6d4b40f37322405a2bf9420c102"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after SetIdentityCase, by user, to generate a test. <br /></td></tr>
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-<tr class="memitem:a11cb2fa660fd8ff98a0a8497512a2877"><td class="memItemLeft" align="right" valign="top"><a id="a11cb2fa660fd8ff98a0a8497512a2877"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a11cb2fa660fd8ff98a0a8497512a2877">setrandomtestcase</a></td></tr>
-<tr class="memdesc:a11cb2fa660fd8ff98a0a8497512a2877"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to generate a test. <br /></td></tr>
-<tr class="separator:a11cb2fa660fd8ff98a0a8497512a2877"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a081909af21f38b8b0ead9ccc8ad0f673"><td class="memItemLeft" align="right" valign="top"><a id="a081909af21f38b8b0ead9ccc8ad0f673"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a081909af21f38b8b0ead9ccc8ad0f673">setrandomrhs</a> (randseedoff)</td></tr>
-<tr class="memdesc:a081909af21f38b8b0ead9ccc8ad0f673"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after SetRandomTestCase, by user, to generate a an RHS. <br /></td></tr>
-<tr class="separator:a081909af21f38b8b0ead9ccc8ad0f673"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad604bc79863a76dce3f4d2c73fea6284"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ad604bc79863a76dce3f4d2c73fea6284">finalize</a> (do_mpifinalize)</td></tr>
-<tr class="memdesc:ad604bc79863a76dce3f4d2c73fea6284"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, after solve, by user.  <a href="namespaceblocktridiagonalsolver.html#ad604bc79863a76dce3f4d2c73fea6284">More...</a><br /></td></tr>
-<tr class="separator:ad604bc79863a76dce3f4d2c73fea6284"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7919e86e2cbaa7f3b32f2b8fe7f1e0c2"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a7919e86e2cbaa7f3b32f2b8fe7f1e0c2">iseven</a> (num)</td></tr>
-<tr class="memdesc:a7919e86e2cbaa7f3b32f2b8fe7f1e0c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Is given integer even?  <a href="namespaceblocktridiagonalsolver.html#a7919e86e2cbaa7f3b32f2b8fe7f1e0c2">More...</a><br /></td></tr>
-<tr class="separator:a7919e86e2cbaa7f3b32f2b8fe7f1e0c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4bc1403126e333de6ca0d7d91ac48d9c"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a4bc1403126e333de6ca0d7d91ac48d9c">isodd</a> (num)</td></tr>
-<tr class="memdesc:a4bc1403126e333de6ca0d7d91ac48d9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Is given integer odd?  <a href="namespaceblocktridiagonalsolver.html#a4bc1403126e333de6ca0d7d91ac48d9c">More...</a><br /></td></tr>
-<tr class="separator:a4bc1403126e333de6ca0d7d91ac48d9c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a88e831d590eb7abac76c038a2af00fe6"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a88e831d590eb7abac76c038a2af00fe6">lr2gr</a> (locrow, level)</td></tr>
-<tr class="memdesc:a88e831d590eb7abac76c038a2af00fe6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines the global row number of a given local row number at a given level.  <a href="namespaceblocktridiagonalsolver.html#a88e831d590eb7abac76c038a2af00fe6">More...</a><br /></td></tr>
-<tr class="separator:a88e831d590eb7abac76c038a2af00fe6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3edec38a2107bba7b8cec1850eee6564"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a3edec38a2107bba7b8cec1850eee6564">gr2lr</a> (globrow, level)</td></tr>
-<tr class="memdesc:a3edec38a2107bba7b8cec1850eee6564"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines the local row number of "globrow" global row number when globrow participates at a given level; returns zero if this globrow does not operate at the given level.  <a href="namespaceblocktridiagonalsolver.html#a3edec38a2107bba7b8cec1850eee6564">More...</a><br /></td></tr>
-<tr class="separator:a3edec38a2107bba7b8cec1850eee6564"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a13c198394f1aa4d28ac858e911fa77e9"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a13c198394f1aa4d28ac858e911fa77e9">gr2rank</a> (globrow)</td></tr>
-<tr class="memdesc:a13c198394f1aa4d28ac858e911fa77e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines the rank of the task holding the given global row (at level 1)  <a href="namespaceblocktridiagonalsolver.html#a13c198394f1aa4d28ac858e911fa77e9">More...</a><br /></td></tr>
-<tr class="separator:a13c198394f1aa4d28ac858e911fa77e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0e2835282996e621ad51a99d16a0a54"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ac0e2835282996e621ad51a99d16a0a54">lr2rank</a> (locrow, level)</td></tr>
-<tr class="memdesc:ac0e2835282996e621ad51a99d16a0a54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines the rank of the task holding the given local row (at a given level)  <a href="namespaceblocktridiagonalsolver.html#ac0e2835282996e621ad51a99d16a0a54">More...</a><br /></td></tr>
-<tr class="separator:ac0e2835282996e621ad51a99d16a0a54"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad2e580ba6e3dcde662a6097eb95a7a04"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ad2e580ba6e3dcde662a6097eb95a7a04">computeforwardoddrowhats</a> (locrow, level, startlocrow, endlocrow, bonly)</td></tr>
-<tr class="memdesc:ad2e580ba6e3dcde662a6097eb95a7a04"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the matrix multiplications in the forward solve at some/any level The row should be odd at the level, The locrow should obey startlocrow &lt;= locrow &lt;= endlocrow.  <a href="namespaceblocktridiagonalsolver.html#ad2e580ba6e3dcde662a6097eb95a7a04">More...</a><br /></td></tr>
-<tr class="separator:ad2e580ba6e3dcde662a6097eb95a7a04"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a71c7cd77b88f69d66d1f8530da364d37"><td class="memItemLeft" align="right" valign="top"><a id="a71c7cd77b88f69d66d1f8530da364d37"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a71c7cd77b88f69d66d1f8530da364d37">forwardsolve</a></td></tr>
-<tr class="memdesc:a71c7cd77b88f69d66d1f8530da364d37"><td class="mdescLeft">&#160;</td><td class="mdescRight">BCYCLIC forward phase; to be called after Initialize. <br /></td></tr>
-<tr class="separator:a71c7cd77b88f69d66d1f8530da364d37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae6f08183c5553e738dee3cffa5210dd5"><td class="memItemLeft" align="right" valign="top"><a id="ae6f08183c5553e738dee3cffa5210dd5"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ae6f08183c5553e738dee3cffa5210dd5">forwardupdateb</a></td></tr>
-<tr class="memdesc:ae6f08183c5553e738dee3cffa5210dd5"><td class="mdescLeft">&#160;</td><td class="mdescRight">BCYCLIC forward phase to deal with a new b; to be called after a SetRHS that may have been invoked after a ForwardSolve, before BackwardSolve. <br /></td></tr>
-<tr class="separator:ae6f08183c5553e738dee3cffa5210dd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8df562dbec1f4da773f18a24beb63e4"><td class="memItemLeft" align="right" valign="top"><a id="ae8df562dbec1f4da773f18a24beb63e4"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ae8df562dbec1f4da773f18a24beb63e4">backwardsolve</a></td></tr>
-<tr class="memdesc:ae8df562dbec1f4da773f18a24beb63e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">BCYCLIC backward phase; to be called after ForwardSolve. <br /></td></tr>
-<tr class="separator:ae8df562dbec1f4da773f18a24beb63e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad0a9837a25fbcb5b5a19709bd9df5067"><td class="memItemLeft" align="right" valign="top"><a id="ad0a9837a25fbcb5b5a19709bd9df5067"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ad0a9837a25fbcb5b5a19709bd9df5067">verifysolution</a></td></tr>
-<tr class="memdesc:ad0a9837a25fbcb5b5a19709bd9df5067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Verify the RMS error of solution after backward solve. <br /></td></tr>
-<tr class="separator:ad0a9837a25fbcb5b5a19709bd9df5067"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af94af45cc8646bb782cb407703441662"><td class="memItemLeft" align="right" valign="top"><a id="af94af45cc8646bb782cb407703441662"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>checksymmetry</b> (asymIndx)</td></tr>
-<tr class="separator:af94af45cc8646bb782cb407703441662"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03cba7327ce226c70cb5f9bb4bd077c5"><td class="memItemLeft" align="right" valign="top"><a id="a03cba7327ce226c70cb5f9bb4bd077c5"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>storediagonal</b> (blkrow, colnum, buf)</td></tr>
-<tr class="separator:a03cba7327ce226c70cb5f9bb4bd077c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adb40049428b017c0a44f2d665c95704e"><td class="memItemLeft" align="right" valign="top"><a id="adb40049428b017c0a44f2d665c95704e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>writeblocks</b> (flag)</td></tr>
-<tr class="separator:adb40049428b017c0a44f2d665c95704e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7de227ad67e19348e9dac52c517e78ad"><td class="memItemLeft" align="right" valign="top"><a id="a7de227ad67e19348e9dac52c517e78ad"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>displayblocks</b> (flag)</td></tr>
-<tr class="separator:a7de227ad67e19348e9dac52c517e78ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a818a066f8cd50c6548988decb102837e"><td class="memItemLeft" align="right" valign="top"><a id="a818a066f8cd50c6548988decb102837e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>parmatvec</b> (invec, outvec, outveclength)</td></tr>
-<tr class="separator:a818a066f8cd50c6548988decb102837e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a689baaffada7802ce8642fcd4445f2ce"><td class="memItemLeft" align="right" valign="top"><a id="a689baaffada7802ce8642fcd4445f2ce"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>setblockrowcol</b> (globrow, colnum, buf, opt)</td></tr>
-<tr class="separator:a689baaffada7802ce8642fcd4445f2ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeec06fed0cb3d0b429afc9f7cdd830bb"><td class="memItemLeft" align="right" valign="top"><a id="aeec06fed0cb3d0b429afc9f7cdd830bb"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>getcolsum</b> (cs)</td></tr>
-<tr class="separator:aeec06fed0cb3d0b429afc9f7cdd830bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8a69dbd602b843a61646ed7835902d0"><td class="memItemLeft" align="right" valign="top"><a id="ae8a69dbd602b843a61646ed7835902d0"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>initscalefactors</b></td></tr>
-<tr class="separator:ae8a69dbd602b843a61646ed7835902d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7764b7ba7ed345b41b101c43b674009b"><td class="memItemLeft" align="right" valign="top"><a id="a7764b7ba7ed345b41b101c43b674009b"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>getscalefactors</b> (js, scalevector)</td></tr>
-<tr class="separator:a7764b7ba7ed345b41b101c43b674009b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a04734ab507208e2f25276173dd500539"><td class="memItemLeft" align="right" valign="top"><a id="a04734ab507208e2f25276173dd500539"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>finalizescalefactors</b></td></tr>
-<tr class="separator:a04734ab507208e2f25276173dd500539"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a421946be2c9b5cce413b3d53306a6b59"><td class="memItemLeft" align="right" valign="top"><a id="a421946be2c9b5cce413b3d53306a6b59"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>parallelscaling</b> (lmp, colsum)</td></tr>
-<tr class="separator:a421946be2c9b5cce413b3d53306a6b59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aef7dd120435aefa11f0c03f2c3b1dd16"><td class="memItemLeft" align="right" valign="top"><a id="aef7dd120435aefa11f0c03f2c3b1dd16"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>findminmax_tri</b> (lmp)</td></tr>
-<tr class="separator:aef7dd120435aefa11f0c03f2c3b1dd16"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60af251c128eb4a3be3d3829e3cb2bde"><td class="memItemLeft" align="right" valign="top"><a id="a60af251c128eb4a3be3d3829e3cb2bde"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>resetdiagonal</b> (lmp, bReset)</td></tr>
-<tr class="separator:a60af251c128eb4a3be3d3829e3cb2bde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a5dc44183db72fbe515ce877dbbf544a2"><td class="memItemLeft" align="right" valign="top"><a id="a5dc44183db72fbe515ce877dbbf544a2"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><b>rprec</b> = SELECTED_REAL_KIND(15, 300)</td></tr>
-<tr class="separator:a5dc44183db72fbe515ce877dbbf544a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a68b9e827bdd472e95043b6ac0f97b274"><td class="memItemLeft" align="right" valign="top"><a id="a68b9e827bdd472e95043b6ac0f97b274"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><b>iprec</b> = SELECTED_INT_KIND(8)</td></tr>
-<tr class="separator:a68b9e827bdd472e95043b6ac0f97b274"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a842b5d80cf0bd72a6fec4f762bd8b3cf"><td class="memItemLeft" align="right" valign="top"><a id="a842b5d80cf0bd72a6fec4f762bd8b3cf"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><b>cprec</b> = KIND((1.0_rprec, 1.0_rprec))</td></tr>
-<tr class="separator:a842b5d80cf0bd72a6fec4f762bd8b3cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a36fd82d32567ef1a8ad70c6238c46ac0"><td class="memItemLeft" align="right" valign="top"><a id="a36fd82d32567ef1a8ad70c6238c46ac0"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><b>dp</b> = rprec</td></tr>
-<tr class="separator:a36fd82d32567ef1a8ad70c6238c46ac0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae3c14e7c8c92d4501752d4d7e330279f"><td class="memItemLeft" align="right" valign="top"><a id="ae3c14e7c8c92d4501752d4d7e330279f"></a>
-type(<a class="el" href="structblocktridiagonalsolver_1_1levelelement.html">levelelement</a>), dimension(:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#ae3c14e7c8c92d4501752d4d7e330279f">lelement</a></td></tr>
-<tr class="memdesc:ae3c14e7c8c92d4501752d4d7e330279f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Data for each row at each level on this rank The first dimension is the level number [1..L], L=#levels of forward solve The 2nd dimension is the row number [1..K+g], K=#rows at level 1 on this rank The +g is for incoming results from neighbors, 0&lt;=g&lt;=2. <br /></td></tr>
-<tr class="separator:ae3c14e7c8c92d4501752d4d7e330279f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03155391fb02ccf64eaadc36ff197d84"><td class="memItemLeft" align="right" valign="top"><a id="a03155391fb02ccf64eaadc36ff197d84"></a>
-type(<a class="el" href="structblocktridiagonalsolver_1_1levelelement.html">levelelement</a>), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#a03155391fb02ccf64eaadc36ff197d84">orig</a></td></tr>
-<tr class="memdesc:a03155391fb02ccf64eaadc36ff197d84"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initial problem specification saved for verification at end of solution The dimension is the row number [1..K], K=#rows at level 1 on this rank. <br /></td></tr>
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-<tr class="memdesc:a9f36904375ac006b5dba15ed23900ddf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Has a new matrix been set after ForwardSolve? <br /></td></tr>
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-<tr class="memdesc:a589f3643d34b3c9d21aea74276916de5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Has a new RHS been set after ForwardSolve? <br /></td></tr>
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-<tr class="memdesc:adc8fcb49e2c8f5856fcb36459672bc7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">set true if column scaling is applied <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver.html#aaf2b9d3353e158cf4db65f1b58777ca4">use_mpiwtime</a></td></tr>
-<tr class="memdesc:aaf2b9d3353e158cf4db65f1b58777ca4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use MPI's timer function? <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Solver for block tri-diagonal matrices. [Kalyan S. Perumalla, ORNL, 2009-2011]. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a19ca39bad842087e9250d7fb892f6edf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a19ca39bad842087e9250d7fb892f6edf">&#9670;&nbsp;</a></span>bsystemclock()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::bsystemclock </td>
-          <td>(</td>
-          <td class="paramtype">double precision, intent(inout)&#160;</td>
-          <td class="paramname"><em>ts</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A convenience function to be able to change clock routine easily. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ts</td><td>Time snapshot </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a683f95d8070ea95b23d756360f794cdd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a683f95d8070ea95b23d756360f794cdd">&#9670;&nbsp;</a></span>chargememory()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::chargememory </td>
-          <td>(</td>
-          <td class="paramtype">real, intent(in)&#160;</td>
-          <td class="paramname"><em>bytes</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convenience routine to track allocated memory sizes. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">bytes</td><td>Number of bytes allocated </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a65305beda9eda026c78791b27d340bfe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a65305beda9eda026c78791b27d340bfe">&#9670;&nbsp;</a></span>chargetime()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::chargetime </td>
-          <td>(</td>
-          <td class="paramtype">double precision, intent(inout)&#160;</td>
-          <td class="paramname"><em>tot</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double precision, intent(in)&#160;</td>
-          <td class="paramname"><em>t2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">double precision, intent(in)&#160;</td>
-          <td class="paramname"><em>t1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>cnt</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convenience routine to accumulate timing values. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">tot</td><td>Total time </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">t2</td><td>Timer value at end of segment being timed </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">t1</td><td>Timer value at start of timed segment </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">cnt</td><td>Counter of number of samples </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad2e580ba6e3dcde662a6097eb95a7a04"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad2e580ba6e3dcde662a6097eb95a7a04">&#9670;&nbsp;</a></span>computeforwardoddrowhats()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::computeforwardoddrowhats </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>locrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>level</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>startlocrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>endlocrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>bonly</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the matrix multiplications in the forward solve at some/any level The row should be odd at the level, The locrow should obey startlocrow &lt;= locrow &lt;= endlocrow. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">locrow</td><td>Row number at a given level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">level</td><td>Local row number is at this level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">startlocrow</td><td>Top-most local row number at given level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">endlocrow</td><td>Bot-most local row number at given level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bonly</td><td>Show compute/update only the b, and not L,D,U? </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad604bc79863a76dce3f4d2c73fea6284"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad604bc79863a76dce3f4d2c73fea6284">&#9670;&nbsp;</a></span>finalize()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::finalize </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>do_mpifinalize</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, after solve, by user. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">do_mpifinalize</td><td>Invoke MPI_Finalize? </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac5d364baaf41b6def1c0ab05459036a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac5d364baaf41b6def1c0ab05459036a6">&#9670;&nbsp;</a></span>fl()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::fl </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>u</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A convenience function to be able to change or turn off easily. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Unit number to flush </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a36173028165c0704abd3c8fe1babd341"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a36173028165c0704abd3c8fe1babd341">&#9670;&nbsp;</a></span>getmatrixrhs()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::getmatrixrhs </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the RHS. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">b</td><td>RHS column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adeaee07ca4cd27d046df89fcfa5de420"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adeaee07ca4cd27d046df89fcfa5de420">&#9670;&nbsp;</a></span>getmatrixrowcold()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::getmatrixrowcold </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Dj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dj</td><td>j'th colum of D at globrow </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7b3db44d71b5d5bcd66165d8707af44e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7b3db44d71b5d5bcd66165d8707af44e">&#9670;&nbsp;</a></span>getmatrixrowcoll()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::getmatrixrowcoll </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Lj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">lj</td><td>j'th colum of L at globrow; 1st L is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a69aff694f0b38b1222aff076e865e462"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a69aff694f0b38b1222aff076e865e462">&#9670;&nbsp;</a></span>getmatrixrowcolu()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::getmatrixrowcolu </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Uj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">uj</td><td>j'th colum of L at globrow; Nth U is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of U at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af752fb102d8f6a907aa050e2f259d198"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af752fb102d8f6a907aa050e2f259d198">&#9670;&nbsp;</a></span>getsolutionvector()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::getsolutionvector </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>x</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, after solve, by user to get the solution vector of a local row. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">x</td><td>Solution column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3edec38a2107bba7b8cec1850eee6564"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3edec38a2107bba7b8cec1850eee6564">&#9670;&nbsp;</a></span>gr2lr()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function blocktridiagonalsolver::gr2lr </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>level</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Determines the local row number of "globrow" global row number when globrow participates at a given level; returns zero if this globrow does not operate at the given level. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Row number in original input (level 1) </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">level</td><td>Level at which globrow's position is needed </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Returned: local row number of global row, at given level </dd></dl>
-
-</div>
-</div>
-<a id="a13c198394f1aa4d28ac858e911fa77e9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a13c198394f1aa4d28ac858e911fa77e9">&#9670;&nbsp;</a></span>gr2rank()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function blocktridiagonalsolver::gr2rank </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Determines the rank of the task holding the given global row (at level 1) </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Row number in original input (level 1) </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Returned: Rank holding the given global row </dd></dl>
-
-</div>
-</div>
-<a id="a72874b1c9150a6a6a3848acee89290c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a72874b1c9150a6a6a3848acee89290c3">&#9670;&nbsp;</a></span>initialize()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::initialize </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>do_mpiinit</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>inN</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>inM</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, by user. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">do_mpiinit</td><td>Invoke MPI_Init? </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inn</td><td>Num of row blocks in input block tri-diag matrix </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inm</td><td>Size of each square sub-matrix block </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7919e86e2cbaa7f3b32f2b8fe7f1e0c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7919e86e2cbaa7f3b32f2b8fe7f1e0c2">&#9670;&nbsp;</a></span>iseven()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function blocktridiagonalsolver::iseven </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Is given integer even? </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num</td><td>A number </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4bc1403126e333de6ca0d7d91ac48d9c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4bc1403126e333de6ca0d7d91ac48d9c">&#9670;&nbsp;</a></span>isodd()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function blocktridiagonalsolver::isodd </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Is given integer odd? </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num</td><td>A number </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a88e831d590eb7abac76c038a2af00fe6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a88e831d590eb7abac76c038a2af00fe6">&#9670;&nbsp;</a></span>lr2gr()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function blocktridiagonalsolver::lr2gr </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>locrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>level</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Determines the global row number of a given local row number at a given level. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">locrow</td><td>local row number of global row, at given level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">level</td><td>Level at which locrow's position is given </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Returned: Row number in original input (level 1) </dd></dl>
-
-</div>
-</div>
-<a id="ac0e2835282996e621ad51a99d16a0a54"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0e2835282996e621ad51a99d16a0a54">&#9670;&nbsp;</a></span>lr2rank()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function blocktridiagonalsolver::lr2rank </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>locrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>level</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Determines the rank of the task holding the given local row (at a given level) </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">locrow</td><td>Row number at a given level </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">level</td><td>Local row number is at this level </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Returned: Rank holding the given global row </dd></dl>
-
-</div>
-</div>
-<a id="a959011e6acc16fd55ca37a9424ace6d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a959011e6acc16fd55ca37a9424ace6d6">&#9670;&nbsp;</a></span>plbdgemm()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::plbdgemm </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), intent(in)&#160;</td>
-          <td class="paramname"><em>alpha</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>A</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>B</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), intent(in)&#160;</td>
-          <td class="paramname"><em>beta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>C</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Encapsulates BLAS' DGEMM functionality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Each matrix of size MxM </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">c</td><td>Matrix of size MxM </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acf20e8973c04f1deda1e133503dbae75"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acf20e8973c04f1deda1e133503dbae75">&#9670;&nbsp;</a></span>plbdgemv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::plbdgemv </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), intent(in)&#160;</td>
-          <td class="paramname"><em>alpha</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>A</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), intent(in)&#160;</td>
-          <td class="paramname"><em>beta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>y</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Encapsulates BLAS' DGEMV functionality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a</td><td>Matrix of size MxM </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>Vector of size Mx1 </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">y</td><td>Vector of size Mx1 </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a14d77d7601d3279328604e2bc2a0cd6a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a14d77d7601d3279328604e2bc2a0cd6a">&#9670;&nbsp;</a></span>plbdgetrf()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::plbdgetrf </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>A</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>piv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>info</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Encapsulates BLAS/LAPACK's DGETRF functionality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a</td><td>Matrix of size MxM </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">piv</td><td>Mx1 </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7d4362f0f37ae0cb3ee3c1ffee56079c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d4362f0f37ae0cb3ee3c1ffee56079c">&#9670;&nbsp;</a></span>plbdgetrs()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::plbdgetrs </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nrhs</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>A</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>piv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>B</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>info</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Encapsulates BLAS/LAPACK's DGETRS functionality. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a</td><td>Matrix of size MxM </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">piv</td><td>Mx1 </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">b</td><td>Matrix of size Mxnrhs </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a371c20d9d4ce0e6cf27a2a3200b78ab9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a371c20d9d4ce0e6cf27a2a3200b78ab9">&#9670;&nbsp;</a></span>setmatrixrhs()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrhs </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>RHS column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2efb7f8c2047f2116aae4d81400e61e6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2efb7f8c2047f2116aae4d81400e61e6">&#9670;&nbsp;</a></span>setmatrixrow()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrow </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>L</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>D</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>U</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Vals in 1st L(or Nth U) == 0.0 </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7a7b69538e44eab479ca116763496c08"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7a7b69538e44eab479ca116763496c08">&#9670;&nbsp;</a></span>setmatrixrowcold()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowcold </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Dj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dj</td><td>j'th colum of D at globrow </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a766a2fc5191f1904880a2bbccb454e1e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a766a2fc5191f1904880a2bbccb454e1e">&#9670;&nbsp;</a></span>setmatrixrowcoll()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowcoll </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Lj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lj</td><td>j'th colum of L at globrow; 1st L is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aac8cb7c5279d469fa193e51254089b2e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac8cb7c5279d469fa193e51254089b2e">&#9670;&nbsp;</a></span>setmatrixrowcolu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowcolu </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Uj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">uj</td><td>j'th colum of L at globrow; Nth U is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of U at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ade6fb9a67a5f049a7c15e48d2ae395be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ade6fb9a67a5f049a7c15e48d2ae395be">&#9670;&nbsp;</a></span>setmatrixrowd()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowd </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>D</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa35772e1d64f33252129c4a9a41e6361"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa35772e1d64f33252129c4a9a41e6361">&#9670;&nbsp;</a></span>setmatrixrowl()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowl </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>L</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">l</td><td>Vals in 1st L == 0.0 </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a36f1c1fd3512b7c00537e4ccfaa231eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a36f1c1fd3512b7c00537e4ccfaa231eb">&#9670;&nbsp;</a></span>setmatrixrowu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::setmatrixrowu </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>U</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">u</td><td>Vals in Nth U == 0.0 </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a61990d564e45776343ea6b18264c57bd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a61990d564e45776343ea6b18264c57bd">&#9670;&nbsp;</a></span>slavereceivematrix()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::slavereceivematrix </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nrows</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncols</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>subA</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>subnrows</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>subncols</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Receive the fragment of matrix sent by master to slave (caller) </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncols</td><td>of global matrix </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adeae9a542ea1c402b75ab25df9bffecd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adeae9a542ea1c402b75ab25df9bffecd">&#9670;&nbsp;</a></span>slavesendmatrix()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::slavesendmatrix </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nrows</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncols</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>subA</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>subnrows</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>subncols</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Send the fragment of matrix by slave (caller) to master. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncols</td><td>of global matrix </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a335496b154f599f24d175df560ca2427"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a335496b154f599f24d175df560ca2427">&#9670;&nbsp;</a></span>slavesendvector()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine blocktridiagonalsolver::slavesendvector </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nrows</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>subV</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>subnrows</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Send the fragment of vector by slave (caller) to master Only slaves who belong to zero'th column of pgrid send to master Other slave simply do no-op for this routine. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">nrows</td><td>of global matrix </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">blocktridiagonalsolver_s Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module contains subroutines for solver for block tri-diagonal matrices.  
-<a href="namespaceblocktridiagonalsolver__s.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a3933ccaac6d2fabb68292ac8407e0f7e"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a3933ccaac6d2fabb68292ac8407e0f7e">initialize</a> (inN, inM)</td></tr>
-<tr class="memdesc:a3933ccaac6d2fabb68292ac8407e0f7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, by user.  <a href="namespaceblocktridiagonalsolver__s.html#a3933ccaac6d2fabb68292ac8407e0f7e">More...</a><br /></td></tr>
-<tr class="separator:a3933ccaac6d2fabb68292ac8407e0f7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abb19cc926855c0a362058814fd336c89"><td class="memItemLeft" align="right" valign="top"><a id="abb19cc926855c0a362058814fd336c89"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>getranks</b> (irank, inranks)</td></tr>
-<tr class="separator:abb19cc926855c0a362058814fd336c89"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a575fa6dd5ae46c84701acfdbffcfbe70"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a575fa6dd5ae46c84701acfdbffcfbe70">setmatrixrowcoll</a> (globrow, Lj, j)</td></tr>
-<tr class="memdesc:a575fa6dd5ae46c84701acfdbffcfbe70"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a575fa6dd5ae46c84701acfdbffcfbe70">More...</a><br /></td></tr>
-<tr class="separator:a575fa6dd5ae46c84701acfdbffcfbe70"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a30264ecb6acd1c1c02f55b6bf5979bc5"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a30264ecb6acd1c1c02f55b6bf5979bc5">setmatrixrowcold</a> (globrow, Dj, j)</td></tr>
-<tr class="memdesc:a30264ecb6acd1c1c02f55b6bf5979bc5"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a30264ecb6acd1c1c02f55b6bf5979bc5">More...</a><br /></td></tr>
-<tr class="separator:a30264ecb6acd1c1c02f55b6bf5979bc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a569cdbc6dfd9452c00cdc0c36b098ebc"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a569cdbc6dfd9452c00cdc0c36b098ebc">setmatrixrowcolu</a> (globrow, Uj, j)</td></tr>
-<tr class="memdesc:a569cdbc6dfd9452c00cdc0c36b098ebc"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a569cdbc6dfd9452c00cdc0c36b098ebc">More...</a><br /></td></tr>
-<tr class="separator:a569cdbc6dfd9452c00cdc0c36b098ebc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5848b2a780f754b6814a35259e3808e6"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a5848b2a780f754b6814a35259e3808e6">setmatrixrhs</a> (globrow, b)</td></tr>
-<tr class="memdesc:a5848b2a780f754b6814a35259e3808e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, before solve, after initialize, by user, to set up the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a5848b2a780f754b6814a35259e3808e6">More...</a><br /></td></tr>
-<tr class="separator:a5848b2a780f754b6814a35259e3808e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0da0ab7117fe6ea1ddc28f6bed8be6ff"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a0da0ab7117fe6ea1ddc28f6bed8be6ff">getmatrixrowcoll</a> (globrow, Lj, j)</td></tr>
-<tr class="memdesc:a0da0ab7117fe6ea1ddc28f6bed8be6ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a0da0ab7117fe6ea1ddc28f6bed8be6ff">More...</a><br /></td></tr>
-<tr class="separator:a0da0ab7117fe6ea1ddc28f6bed8be6ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:addbce929d7820255496dfac1b7991884"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#addbce929d7820255496dfac1b7991884">getmatrixrowcold</a> (globrow, Dj, j)</td></tr>
-<tr class="memdesc:addbce929d7820255496dfac1b7991884"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#addbce929d7820255496dfac1b7991884">More...</a><br /></td></tr>
-<tr class="separator:addbce929d7820255496dfac1b7991884"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a806832ce1345f1eb9cde1f6f5bdf51b7"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a806832ce1345f1eb9cde1f6f5bdf51b7">getmatrixrowcolu</a> (globrow, Uj, j)</td></tr>
-<tr class="memdesc:a806832ce1345f1eb9cde1f6f5bdf51b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the matrix.  <a href="namespaceblocktridiagonalsolver__s.html#a806832ce1345f1eb9cde1f6f5bdf51b7">More...</a><br /></td></tr>
-<tr class="separator:a806832ce1345f1eb9cde1f6f5bdf51b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8b095827b9fbf70cf02df0f8d3f3867"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#ae8b095827b9fbf70cf02df0f8d3f3867">getmatrixrhs</a> (globrow, b)</td></tr>
-<tr class="memdesc:ae8b095827b9fbf70cf02df0f8d3f3867"><td class="mdescLeft">&#160;</td><td class="mdescRight">Can be invoked after initialize, by user, to get a copy of the RHS.  <a href="namespaceblocktridiagonalsolver__s.html#ae8b095827b9fbf70cf02df0f8d3f3867">More...</a><br /></td></tr>
-<tr class="separator:ae8b095827b9fbf70cf02df0f8d3f3867"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af8fa42911638dd7f3a3432a2593b821a"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#af8fa42911638dd7f3a3432a2593b821a">getsolutionvector</a> (globrow, x)</td></tr>
-<tr class="memdesc:af8fa42911638dd7f3a3432a2593b821a"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, after solve, by user to get the solution vector of a local row.  <a href="namespaceblocktridiagonalsolver__s.html#af8fa42911638dd7f3a3432a2593b821a">More...</a><br /></td></tr>
-<tr class="separator:af8fa42911638dd7f3a3432a2593b821a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3af7d5a559d6310897c17c4403d3e32b"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a3af7d5a559d6310897c17c4403d3e32b">finalize</a> (do_mpifinalize)</td></tr>
-<tr class="memdesc:a3af7d5a559d6310897c17c4403d3e32b"><td class="mdescLeft">&#160;</td><td class="mdescRight">To be invoked, after solve, by user.  <a href="namespaceblocktridiagonalsolver__s.html#a3af7d5a559d6310897c17c4403d3e32b">More...</a><br /></td></tr>
-<tr class="separator:a3af7d5a559d6310897c17c4403d3e32b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6af7ba06cb1dd0dd3343ac1bf5d70425"><td class="memItemLeft" align="right" valign="top"><a id="a6af7ba06cb1dd0dd3343ac1bf5d70425"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a6af7ba06cb1dd0dd3343ac1bf5d70425">forwardsolve</a></td></tr>
-<tr class="memdesc:a6af7ba06cb1dd0dd3343ac1bf5d70425"><td class="mdescLeft">&#160;</td><td class="mdescRight">BCYCLIC forward phase; to be called after Initialize. <br /></td></tr>
-<tr class="separator:a6af7ba06cb1dd0dd3343ac1bf5d70425"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3194664a997b1ae8dce86176ac784f03"><td class="memItemLeft" align="right" valign="top"><a id="a3194664a997b1ae8dce86176ac784f03"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#a3194664a997b1ae8dce86176ac784f03">backwardsolve</a></td></tr>
-<tr class="memdesc:a3194664a997b1ae8dce86176ac784f03"><td class="mdescLeft">&#160;</td><td class="mdescRight">BCYCLIC backward phase; to be called after ForwardSolve. <br /></td></tr>
-<tr class="separator:a3194664a997b1ae8dce86176ac784f03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9308abe5289520869f2c730bce228f94"><td class="memItemLeft" align="right" valign="top"><a id="a9308abe5289520869f2c730bce228f94"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>checkconditionnumber</b> (nblkrow, bsize, anorm, rcond, info)</td></tr>
-<tr class="separator:a9308abe5289520869f2c730bce228f94"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7a846ad77d87affd8cbd0a3a708c0cb"><td class="memItemLeft" align="right" valign="top"><a id="ab7a846ad77d87affd8cbd0a3a708c0cb"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>checksymmetry</b> (asymIndx)</td></tr>
-<tr class="separator:ab7a846ad77d87affd8cbd0a3a708c0cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd5f031b053178c0843182c12138f1c7"><td class="memItemLeft" align="right" valign="top"><a id="acd5f031b053178c0843182c12138f1c7"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>storediagonal</b> (blkrow, colnum, buf)</td></tr>
-<tr class="separator:acd5f031b053178c0843182c12138f1c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a81519bb3b8f93267bd0bc5368da34a18"><td class="memItemLeft" align="right" valign="top"><a id="a81519bb3b8f93267bd0bc5368da34a18"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>parmatvec</b> (invec, outvec, outveclength)</td></tr>
-<tr class="separator:a81519bb3b8f93267bd0bc5368da34a18"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f01d79de2ce4bfe9e83ad4983a47990"><td class="memItemLeft" align="right" valign="top"><a id="a2f01d79de2ce4bfe9e83ad4983a47990"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>applyparallelscaling</b> (lmp, colscale, lverbose)</td></tr>
-<tr class="separator:a2f01d79de2ce4bfe9e83ad4983a47990"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26d79d18f99a58e4a79797635b9b8a4a"><td class="memItemLeft" align="right" valign="top"><a id="a26d79d18f99a58e4a79797635b9b8a4a"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>findminmax_tri</b> (lmp)</td></tr>
-<tr class="separator:a26d79d18f99a58e4a79797635b9b8a4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af29d5d2175506328bb4ef18d23ae857f"><td class="memItemLeft" align="right" valign="top"><a id="af29d5d2175506328bb4ef18d23ae857f"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>refactorhessian</b> (lmp)</td></tr>
-<tr class="separator:af29d5d2175506328bb4ef18d23ae857f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a62d3aa16f9d39d5458690916e3113abd"><td class="memItemLeft" align="right" valign="top"><a id="a62d3aa16f9d39d5458690916e3113abd"></a>
-subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><b>padsides</b> (arrin, blksize, top, bot)</td></tr>
-<tr class="separator:a62d3aa16f9d39d5458690916e3113abd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ad75494516910991458369900b28cd831"><td class="memItemLeft" align="right" valign="top"><a id="ad75494516910991458369900b28cd831"></a>
-real(dp), public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#ad75494516910991458369900b28cd831">maxeigen_tri</a></td></tr>
-<tr class="memdesc:ad75494516910991458369900b28cd831"><td class="mdescLeft">&#160;</td><td class="mdescRight">maximum eigenvalue from Gerschgorin theorem <br /></td></tr>
-<tr class="separator:ad75494516910991458369900b28cd831"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab81d74d04a455786be84ab38a5919d9d"><td class="memItemLeft" align="right" valign="top"><a id="ab81d74d04a455786be84ab38a5919d9d"></a>
-real(dp), public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceblocktridiagonalsolver__s.html#ab81d74d04a455786be84ab38a5919d9d">dmin_tri</a></td></tr>
-<tr class="memdesc:ab81d74d04a455786be84ab38a5919d9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">minimum non-zero diagonal element, used to scale Levenberg parameter (SPH 08-31-16) <br /></td></tr>
-<tr class="separator:ab81d74d04a455786be84ab38a5919d9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module contains subroutines for solver for block tri-diagonal matrices. </p>
-<dl class="section author"><dt>Author</dt><dd>Kalyan S. Perumalla and Sudip K. Seal, ORNL </dd></dl>
-<dl class="section date"><dt>Date</dt><dd>2009-2017 </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a3af7d5a559d6310897c17c4403d3e32b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3af7d5a559d6310897c17c4403d3e32b">&#9670;&nbsp;</a></span>finalize()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::finalize </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>do_mpifinalize</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, after solve, by user. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">do_mpifinalize</td><td>Invoke MPI_Finalize? </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae8b095827b9fbf70cf02df0f8d3f3867"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae8b095827b9fbf70cf02df0f8d3f3867">&#9670;&nbsp;</a></span>getmatrixrhs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::getmatrixrhs </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the RHS. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">b</td><td>RHS column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="addbce929d7820255496dfac1b7991884"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#addbce929d7820255496dfac1b7991884">&#9670;&nbsp;</a></span>getmatrixrowcold()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::getmatrixrowcold </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Dj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dj</td><td>j'th colum of D at globrow </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0da0ab7117fe6ea1ddc28f6bed8be6ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0da0ab7117fe6ea1ddc28f6bed8be6ff">&#9670;&nbsp;</a></span>getmatrixrowcoll()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::getmatrixrowcoll </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Lj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">lj</td><td>j'th colum of L at globrow; 1st L is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a806832ce1345f1eb9cde1f6f5bdf51b7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a806832ce1345f1eb9cde1f6f5bdf51b7">&#9670;&nbsp;</a></span>getmatrixrowcolu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::getmatrixrowcolu </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>Uj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Can be invoked after initialize, by user, to get a copy of the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">uj</td><td>j'th colum of L at globrow; Nth U is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of U at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af8fa42911638dd7f3a3432a2593b821a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af8fa42911638dd7f3a3432a2593b821a">&#9670;&nbsp;</a></span>getsolutionvector()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::getsolutionvector </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>x</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, after solve, by user to get the solution vector of a local row. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">x</td><td>Solution column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3933ccaac6d2fabb68292ac8407e0f7e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3933ccaac6d2fabb68292ac8407e0f7e">&#9670;&nbsp;</a></span>initialize()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::initialize </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>inN</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>inM</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, by user. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">inn</td><td>Num of row blocks in input block tri-diag matrix </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inm</td><td>Size of each square sub-matrix block </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5848b2a780f754b6814a35259e3808e6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5848b2a780f754b6814a35259e3808e6">&#9670;&nbsp;</a></span>setmatrixrhs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::setmatrixrhs </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>RHS column corr. to globrow </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a30264ecb6acd1c1c02f55b6bf5979bc5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a30264ecb6acd1c1c02f55b6bf5979bc5">&#9670;&nbsp;</a></span>setmatrixrowcold()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::setmatrixrowcold </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Dj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dj</td><td>j'th colum of D at globrow </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a575fa6dd5ae46c84701acfdbffcfbe70"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a575fa6dd5ae46c84701acfdbffcfbe70">&#9670;&nbsp;</a></span>setmatrixrowcoll()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::setmatrixrowcoll </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Lj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lj</td><td>j'th colum of L at globrow; 1st L is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of L at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a569cdbc6dfd9452c00cdc0c36b098ebc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a569cdbc6dfd9452c00cdc0c36b098ebc">&#9670;&nbsp;</a></span>setmatrixrowcolu()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public blocktridiagonalsolver_s::setmatrixrowcolu </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>globrow</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>Uj</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>To be invoked, before solve, after initialize, by user, to set up the matrix. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">globrow</td><td>Original/global block-row num in [1..N] </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">uj</td><td>j'th colum of U at globrow; Nth U is always 0 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>column number of U at globrow that is being set </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">bmw_commandline_parser Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Defines the base class of the type <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>.  
-<a href="namespacebmw__commandline__parser.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7325863209617c1c08513e1edb9fec0f"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a7325863209617c1c08513e1edb9fec0f">bmw_commandline_parser_construct</a> (parallel)</td></tr>
-<tr class="memdesc:a7325863209617c1c08513e1edb9fec0f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object.  <a href="namespacebmw__commandline__parser.html#a7325863209617c1c08513e1edb9fec0f">More...</a><br /></td></tr>
-<tr class="separator:a7325863209617c1c08513e1edb9fec0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd4277b174db8cc4f89ef2a8572a1edb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#acd4277b174db8cc4f89ef2a8572a1edb">bmw_commandline_parser_destruct</a> (this)</td></tr>
-<tr class="memdesc:acd4277b174db8cc4f89ef2a8572a1edb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object.  <a href="namespacebmw__commandline__parser.html#acd4277b174db8cc4f89ef2a8572a1edb">More...</a><br /></td></tr>
-<tr class="separator:acd4277b174db8cc4f89ef2a8572a1edb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5848fd3324ee4897a91b684097532be"><td class="memItemLeft" align="right" valign="top">character(len=path_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#ad5848fd3324ee4897a91b684097532be">bmw_commandline_parser_get_string</a> (this, arg)</td></tr>
-<tr class="memdesc:ad5848fd3324ee4897a91b684097532be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as a string.  <a href="namespacebmw__commandline__parser.html#ad5848fd3324ee4897a91b684097532be">More...</a><br /></td></tr>
-<tr class="separator:ad5848fd3324ee4897a91b684097532be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a30d7722729f6c998607735e30b38f994"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a30d7722729f6c998607735e30b38f994">bmw_commandline_parser_get_integer</a> (this, arg, default_value)</td></tr>
-<tr class="memdesc:a30d7722729f6c998607735e30b38f994"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as an integer.  <a href="namespacebmw__commandline__parser.html#a30d7722729f6c998607735e30b38f994">More...</a><br /></td></tr>
-<tr class="separator:a30d7722729f6c998607735e30b38f994"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa180c53f7f1b7fde097928a15e31a13f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#aa180c53f7f1b7fde097928a15e31a13f">bmw_commandline_parser_get_real</a> (this, arg, default_value)</td></tr>
-<tr class="memdesc:aa180c53f7f1b7fde097928a15e31a13f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as a Real.  <a href="namespacebmw__commandline__parser.html#aa180c53f7f1b7fde097928a15e31a13f">More...</a><br /></td></tr>
-<tr class="separator:aa180c53f7f1b7fde097928a15e31a13f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a722146ae07d9b51c77d8ed47be850431"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a722146ae07d9b51c77d8ed47be850431">bmw_commandline_parser_is_flag_set</a> (this, arg)</td></tr>
-<tr class="memdesc:a722146ae07d9b51c77d8ed47be850431"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a command line argument was set.  <a href="namespacebmw__commandline__parser.html#a722146ae07d9b51c77d8ed47be850431">More...</a><br /></td></tr>
-<tr class="separator:a722146ae07d9b51c77d8ed47be850431"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d8473eb19b6303db674c9feb3e7dc91"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a6d8473eb19b6303db674c9feb3e7dc91">bmw_commandline_parser_flag_requires_value</a> (this, index)</td></tr>
-<tr class="memdesc:a6d8473eb19b6303db674c9feb3e7dc91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a command line argument requires a value.  <a href="namespacebmw__commandline__parser.html#a6d8473eb19b6303db674c9feb3e7dc91">More...</a><br /></td></tr>
-<tr class="separator:a6d8473eb19b6303db674c9feb3e7dc91"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a20f83d807faa76fb1702c909adf762d8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a20f83d807faa76fb1702c909adf762d8">bmw_commandline_parser_print_help</a></td></tr>
-<tr class="memdesc:a20f83d807faa76fb1702c909adf762d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out help text.  <a href="namespacebmw__commandline__parser.html#a20f83d807faa76fb1702c909adf762d8">More...</a><br /></td></tr>
-<tr class="separator:a20f83d807faa76fb1702c909adf762d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a90b7ea1b9f129c5146a7732a5f0b98e4"><td class="memItemLeft" align="right" valign="top"><a id="a90b7ea1b9f129c5146a7732a5f0b98e4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#a90b7ea1b9f129c5146a7732a5f0b98e4">bmw_commandline_parser_no_error</a> = 0</td></tr>
-<tr class="memdesc:a90b7ea1b9f129c5146a7732a5f0b98e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Commandline argument not found. <br /></td></tr>
-<tr class="separator:a90b7ea1b9f129c5146a7732a5f0b98e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac4d1f02dfd69ad804dcb3ceecdf75efe"><td class="memItemLeft" align="right" valign="top"><a id="ac4d1f02dfd69ad804dcb3ceecdf75efe"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__commandline__parser.html#ac4d1f02dfd69ad804dcb3ceecdf75efe">bmw_commandline_parser_arg_not_found</a> = -1</td></tr>
-<tr class="memdesc:ac4d1f02dfd69ad804dcb3ceecdf75efe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Commandline argument not found. <br /></td></tr>
-<tr class="separator:ac4d1f02dfd69ad804dcb3ceecdf75efe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a7325863209617c1c08513e1edb9fec0f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7325863209617c1c08513e1edb9fec0f">&#9670;&nbsp;</a></span>bmw_commandline_parser_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>) function, pointer bmw_commandline_parser::bmw_commandline_parser_construct </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object. The command line is parsed assuming the the flags take the form of -flag=value. If the '=' is missing, it is assumed there is no value. If -h is found, the help text is printed out and the program terminated.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="acd4277b174db8cc4f89ef2a8572a1edb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd4277b174db8cc4f89ef2a8572a1edb">&#9670;&nbsp;</a></span>bmw_commandline_parser_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_commandline_parser::bmw_commandline_parser_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6d8473eb19b6303db674c9feb3e7dc91"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6d8473eb19b6303db674c9feb3e7dc91">&#9670;&nbsp;</a></span>bmw_commandline_parser_flag_requires_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_commandline_parser::bmw_commandline_parser_flag_requires_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Check if a command line argument requires a value. </p>
-<p>Command line arguments for</p>
-<ul>
-<li>-mgridf</li>
-<li>-woutf</li>
-<li>-wvacf</li>
-<li>-siestaf</li>
-<li>-outf</li>
-<li>-logf</li>
-</ul>
-<p>require a value to be set.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the argument has a value. </dd></dl>
-
-</div>
-</div>
-<a id="a30d7722729f6c998607735e30b38f994"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a30d7722729f6c998607735e30b38f994">&#9670;&nbsp;</a></span>bmw_commandline_parser_get_integer()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function bmw_commandline_parser::bmw_commandline_parser_get_integer </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as an integer. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="aa180c53f7f1b7fde097928a15e31a13f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa180c53f7f1b7fde097928a15e31a13f">&#9670;&nbsp;</a></span>bmw_commandline_parser_get_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function bmw_commandline_parser::bmw_commandline_parser_get_real </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as a Real. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="ad5848fd3324ee4897a91b684097532be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad5848fd3324ee4897a91b684097532be">&#9670;&nbsp;</a></span>bmw_commandline_parser_get_string()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=path_length) function bmw_commandline_parser::bmw_commandline_parser_get_string </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
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-<p>Get the value of an argument as a string. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found or no value was set, a blank string is returned. command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a722146ae07d9b51c77d8ed47be850431">&#9670;&nbsp;</a></span>bmw_commandline_parser_is_flag_set()</h2>
-
-<div class="memitem">
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-          <td class="memname">logical function bmw_commandline_parser::bmw_commandline_parser_is_flag_set </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Check if a command line argument was set. </p>
-<p>Searches the parsed command line flags for a matching command line argument. If no matching argument is found the flag was not set.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the argument was found, false if it was not found. </dd></dl>
-
-</div>
-</div>
-<a id="a20f83d807faa76fb1702c909adf762d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a20f83d807faa76fb1702c909adf762d8">&#9670;&nbsp;</a></span>bmw_commandline_parser_print_help()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine bmw_commandline_parser::bmw_commandline_parser_print_help</td>
-        </tr>
-      </table>
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-
-<p>Print out help text. </p>
-<p>Command line help text should take the form of '-flag' that is maximum length of max_arg_length followed by a space. A Y or N indicating the flag takes a value or not followed by a space. A short message describing the flag. A reference for all the command line arguments can be found at <a class="el" href="cl_parsing_sec.html">Command Line Arguments</a>. </p>
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-<p>Defines the base class of the type <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>. This contains the state variables needed by BMW.  
-<a href="namespacebmw__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a bmw context. This contains all memory needed to operate bmw.  <a href="structbmw__context_1_1bmw__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1c7620fdb1baa02f56560edf0d647416"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a1c7620fdb1baa02f56560edf0d647416">bmw_context_construct</a> (mgrid_file_name, wout_file_name, siesta_file_name, flags, num_p, parallel, io_unit)</td></tr>
-<tr class="memdesc:a1c7620fdb1baa02f56560edf0d647416"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="namespacebmw__context.html#a1c7620fdb1baa02f56560edf0d647416">More...</a><br /></td></tr>
-<tr class="separator:a1c7620fdb1baa02f56560edf0d647416"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2c9c6c7740f42649991701946c04640b"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a2c9c6c7740f42649991701946c04640b">bmw_context_construct_plasma</a> (wout_file_name, siesta_file_name, flags, num_r, num_p, num_z, rmax, rmin, zmax, zmin, parallel, io_unit)</td></tr>
-<tr class="memdesc:a2c9c6c7740f42649991701946c04640b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="namespacebmw__context.html#a2c9c6c7740f42649991701946c04640b">More...</a><br /></td></tr>
-<tr class="separator:a2c9c6c7740f42649991701946c04640b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8ee1d70848bb1bef3e65cc7da7001805"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a8ee1d70848bb1bef3e65cc7da7001805">bmw_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:a8ee1d70848bb1bef3e65cc7da7001805"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="namespacebmw__context.html#a8ee1d70848bb1bef3e65cc7da7001805">More...</a><br /></td></tr>
-<tr class="separator:a8ee1d70848bb1bef3e65cc7da7001805"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a566dc6ab8d4ff82fee14e9a6844a3e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a1a566dc6ab8d4ff82fee14e9a6844a3e">bmw_context_set_up_grid_m</a> (this, p_start, p_end, parallel, io_unit)</td></tr>
-<tr class="memdesc:a1a566dc6ab8d4ff82fee14e9a6844a3e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the unprimed grid.  <a href="namespacebmw__context.html#a1a566dc6ab8d4ff82fee14e9a6844a3e">More...</a><br /></td></tr>
-<tr class="separator:a1a566dc6ab8d4ff82fee14e9a6844a3e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16b344b8f4d1fbc224ebce3561d2a0f9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a16b344b8f4d1fbc224ebce3561d2a0f9">bmw_context_set_up_grid_a</a> (this, r_grid, z_grid, dphi, parallel, io_unit)</td></tr>
-<tr class="memdesc:a16b344b8f4d1fbc224ebce3561d2a0f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the unprimed grid.  <a href="namespacebmw__context.html#a16b344b8f4d1fbc224ebce3561d2a0f9">More...</a><br /></td></tr>
-<tr class="separator:a16b344b8f4d1fbc224ebce3561d2a0f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb8db6cf0a047293ac9de6c734a12bb6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#acb8db6cf0a047293ac9de6c734a12bb6">bmw_context_set_up_grid_c</a> (this, vmec_vac_file, num_v, flags, p_start, p_end, parallel, io_unit)</td></tr>
-<tr class="memdesc:acb8db6cf0a047293ac9de6c734a12bb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the unprimed grid.  <a href="namespacebmw__context.html#acb8db6cf0a047293ac9de6c734a12bb6">More...</a><br /></td></tr>
-<tr class="separator:acb8db6cf0a047293ac9de6c734a12bb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05733762ffd48b52b7c3ed11fabdd367"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a05733762ffd48b52b7c3ed11fabdd367">bmw_context_write</a> (this, result_file_name, parallel)</td></tr>
-<tr class="memdesc:a05733762ffd48b52b7c3ed11fabdd367"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write NetCDF based result file.  <a href="namespacebmw__context.html#a05733762ffd48b52b7c3ed11fabdd367">More...</a><br /></td></tr>
-<tr class="separator:a05733762ffd48b52b7c3ed11fabdd367"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a743c401df6cead2131573e6b002b2217"><td class="memItemLeft" align="right" valign="top"><a id="a743c401df6cead2131573e6b002b2217"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__context.html#a743c401df6cead2131573e6b002b2217">series</a> = 3</td></tr>
-<tr class="memdesc:a743c401df6cead2131573e6b002b2217"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version number. <br /></td></tr>
-<tr class="separator:a743c401df6cead2131573e6b002b2217"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>. This contains the state variables needed by BMW. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a1c7620fdb1baa02f56560edf0d647416"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1c7620fdb1baa02f56560edf0d647416">&#9670;&nbsp;</a></span>bmw_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>) function, pointer bmw_context::bmw_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>num_p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>Path and name of the mgrid file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Path and name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Path and name of the siesta file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Option flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of phi planes per field period. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a2c9c6c7740f42649991701946c04640b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2c9c6c7740f42649991701946c04640b">&#9670;&nbsp;</a></span>bmw_context_construct_plasma()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>) function, pointer bmw_context::bmw_context_construct_plasma </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>Path and name of the mgrid file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Path and name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Path and name of the siesta file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Option flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_r</td><td>Number of radial points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of toroidal points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_z</td><td>Number of vertical points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a8ee1d70848bb1bef3e65cc7da7001805"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8ee1d70848bb1bef3e65cc7da7001805">&#9670;&nbsp;</a></span>bmw_context_destruct()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine bmw_context::bmw_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a16b344b8f4d1fbc224ebce3561d2a0f9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16b344b8f4d1fbc224ebce3561d2a0f9">&#9670;&nbsp;</a></span>bmw_context_set_up_grid_a()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_context::bmw_context_set_up_grid_a </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>r_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>z_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>dphi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the unprimed grid. </p>
-<p>This initializes the unprimed file using supplied grid as the unprimed grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_grid</td><td>3D Array of r positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_grid</td><td>3D Array of z positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dphi</td><td>Phi grid spacing. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="acb8db6cf0a047293ac9de6c734a12bb6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb8db6cf0a047293ac9de6c734a12bb6">&#9670;&nbsp;</a></span>bmw_context_set_up_grid_c()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_context::bmw_context_set_up_grid_c </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>vmec_vac_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the unprimed grid. </p>
-<p>This initializes the unprimed file using supplied grid as the unprimed grid. This run the vacuum corrected unprimed grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_vac_file</td><td>Name of the zero beta vmec file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_grid</td><td>3D Array of r positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_grid</td><td>3D Array of z positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dphi</td><td>Phi grid spacing. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a1a566dc6ab8d4ff82fee14e9a6844a3e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1a566dc6ab8d4ff82fee14e9a6844a3e">&#9670;&nbsp;</a></span>bmw_context_set_up_grid_m()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_context::bmw_context_set_up_grid_m </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the unprimed grid. </p>
-<p>This initializes the unprimed file using the mgrid grid as the unprimed grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_start</td><td>Starting phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_end</td><td>Ending phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a05733762ffd48b52b7c3ed11fabdd367"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05733762ffd48b52b7c3ed11fabdd367">&#9670;&nbsp;</a></span>bmw_context_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_context::bmw_context_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>result_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write NetCDF based result file. </p>
-<p>Defines dimensions and variables for the BMW result file. Flat internal arrays need to be reshaped to the dimension.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_file_name</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">bmw_parallel_context Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Defines the base class of the type <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>. This contains the state variables needed by BMW for parallel computation.  
-<a href="namespacebmw__parallel__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a bmw parallel context. This contains all memory needed parameters needed to parallel processing.  <a href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:abb61e77a6092b2a5675be617a44a617a"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#abb61e77a6092b2a5675be617a44a617a">bmw_parallel_context_construct</a> (comm)</td></tr>
-<tr class="memdesc:abb61e77a6092b2a5675be617a44a617a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a bmw_context_class object.  <a href="namespacebmw__parallel__context.html#abb61e77a6092b2a5675be617a44a617a">More...</a><br /></td></tr>
-<tr class="separator:abb61e77a6092b2a5675be617a44a617a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a46fe95711525d902ac2c91671983b10c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a46fe95711525d902ac2c91671983b10c">bmw_parallel_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:a46fe95711525d902ac2c91671983b10c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> object.  <a href="namespacebmw__parallel__context.html#a46fe95711525d902ac2c91671983b10c">More...</a><br /></td></tr>
-<tr class="separator:a46fe95711525d902ac2c91671983b10c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa155eebd5433ae179013d34b58392c9d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#aa155eebd5433ae179013d34b58392c9d">bmw_parallel_context_set_threads</a> (this, num_threads)</td></tr>
-<tr class="memdesc:aa155eebd5433ae179013d34b58392c9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the number of threads.  <a href="namespacebmw__parallel__context.html#aa155eebd5433ae179013d34b58392c9d">More...</a><br /></td></tr>
-<tr class="separator:aa155eebd5433ae179013d34b58392c9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a749a1ae195871249c5d9927c0ec07fe7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a749a1ae195871249c5d9927c0ec07fe7">bmw_parallel_context_abort</a> (status)</td></tr>
-<tr class="memdesc:a749a1ae195871249c5d9927c0ec07fe7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abort the entire program.  <a href="namespacebmw__parallel__context.html#a749a1ae195871249c5d9927c0ec07fe7">More...</a><br /></td></tr>
-<tr class="separator:a749a1ae195871249c5d9927c0ec07fe7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa943f42d724ebb57fe4ada59aa561391"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#aa943f42d724ebb57fe4ada59aa561391">bmw_parallel_context_report</a> (this, io_unit)</td></tr>
-<tr class="memdesc:aa943f42d724ebb57fe4ada59aa561391"><td class="mdescLeft">&#160;</td><td class="mdescRight">Report the number of parallel processes and threads.  <a href="namespacebmw__parallel__context.html#aa943f42d724ebb57fe4ada59aa561391">More...</a><br /></td></tr>
-<tr class="separator:aa943f42d724ebb57fe4ada59aa561391"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a925ba4b4dfce13b8244b9aeac6e080de"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a925ba4b4dfce13b8244b9aeac6e080de">bmw_parallel_context_reduce1</a> (this, buffer)</td></tr>
-<tr class="memdesc:a925ba4b4dfce13b8244b9aeac6e080de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reduce parallel buffers.  <a href="namespacebmw__parallel__context.html#a925ba4b4dfce13b8244b9aeac6e080de">More...</a><br /></td></tr>
-<tr class="separator:a925ba4b4dfce13b8244b9aeac6e080de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9715fce597e8b148ebc3c05fde991eac"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a9715fce597e8b148ebc3c05fde991eac">bmw_parallel_context_reduce2</a> (this, buffer)</td></tr>
-<tr class="memdesc:a9715fce597e8b148ebc3c05fde991eac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reduce parallel buffers.  <a href="namespacebmw__parallel__context.html#a9715fce597e8b148ebc3c05fde991eac">More...</a><br /></td></tr>
-<tr class="separator:a9715fce597e8b148ebc3c05fde991eac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9bbf8d8fa7c25b3bbf3cf7ff819a76c6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a9bbf8d8fa7c25b3bbf3cf7ff819a76c6">bmw_parallel_context_reduce3</a> (this, buffer)</td></tr>
-<tr class="memdesc:a9bbf8d8fa7c25b3bbf3cf7ff819a76c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reduce parallel buffers.  <a href="namespacebmw__parallel__context.html#a9bbf8d8fa7c25b3bbf3cf7ff819a76c6">More...</a><br /></td></tr>
-<tr class="separator:a9bbf8d8fa7c25b3bbf3cf7ff819a76c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a169674bf06fe2076b717bf329c12e3e7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a169674bf06fe2076b717bf329c12e3e7">bmw_parallel_context_reduce4</a> (this, buffer)</td></tr>
-<tr class="memdesc:a169674bf06fe2076b717bf329c12e3e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reduce parallel buffers.  <a href="namespacebmw__parallel__context.html#a169674bf06fe2076b717bf329c12e3e7">More...</a><br /></td></tr>
-<tr class="separator:a169674bf06fe2076b717bf329c12e3e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e2382c07d73e07870c912c03a566f41"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a4e2382c07d73e07870c912c03a566f41">bmw_parallel_context_start</a> (this, total)</td></tr>
-<tr class="memdesc:a4e2382c07d73e07870c912c03a566f41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the start index of a flat array.  <a href="namespacebmw__parallel__context.html#a4e2382c07d73e07870c912c03a566f41">More...</a><br /></td></tr>
-<tr class="separator:a4e2382c07d73e07870c912c03a566f41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a04761f7d52c7b6e5c82b6b281c72615d"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a04761f7d52c7b6e5c82b6b281c72615d">bmw_parallel_context_end</a> (this, total)</td></tr>
-<tr class="memdesc:a04761f7d52c7b6e5c82b6b281c72615d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the end index of a flat array.  <a href="namespacebmw__parallel__context.html#a04761f7d52c7b6e5c82b6b281c72615d">More...</a><br /></td></tr>
-<tr class="separator:a04761f7d52c7b6e5c82b6b281c72615d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec73b8c93fe41dfa328b484bfd160a86"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#aec73b8c93fe41dfa328b484bfd160a86">bmw_parallel_context_i</a> (index, num_i)</td></tr>
-<tr class="memdesc:aec73b8c93fe41dfa328b484bfd160a86"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the i index of a flat array.  <a href="namespacebmw__parallel__context.html#aec73b8c93fe41dfa328b484bfd160a86">More...</a><br /></td></tr>
-<tr class="separator:aec73b8c93fe41dfa328b484bfd160a86"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a93940274cd09874ab96cf50faf19dbdd"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#a93940274cd09874ab96cf50faf19dbdd">bmw_parallel_context_j</a> (index, num_i, num_j)</td></tr>
-<tr class="memdesc:a93940274cd09874ab96cf50faf19dbdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the j index of a flat array.  <a href="namespacebmw__parallel__context.html#a93940274cd09874ab96cf50faf19dbdd">More...</a><br /></td></tr>
-<tr class="separator:a93940274cd09874ab96cf50faf19dbdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8a34abc76e29984d6c0778131aa85aa"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__parallel__context.html#ad8a34abc76e29984d6c0778131aa85aa">bmw_parallel_context_k</a> (index, num_i, num_j)</td></tr>
-<tr class="memdesc:ad8a34abc76e29984d6c0778131aa85aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the k index of a flat array.  <a href="namespacebmw__parallel__context.html#ad8a34abc76e29984d6c0778131aa85aa">More...</a><br /></td></tr>
-<tr class="separator:ad8a34abc76e29984d6c0778131aa85aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>. This contains the state variables needed by BMW for parallel computation. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a749a1ae195871249c5d9927c0ec07fe7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a749a1ae195871249c5d9927c0ec07fe7">&#9670;&nbsp;</a></span>bmw_parallel_context_abort()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_abort </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>status</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Abort the entire program. </p>
-<p>Aborts everything.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">status</td><td>Error number to abort with. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="abb61e77a6092b2a5675be617a44a617a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abb61e77a6092b2a5675be617a44a617a">&#9670;&nbsp;</a></span>bmw_parallel_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>) function, pointer bmw_parallel_context::bmw_parallel_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>comm</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a bmw_context_class object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">comm</td><td>MPI communicator. Only used if MPI support has been compiled in. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a46fe95711525d902ac2c91671983b10c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a46fe95711525d902ac2c91671983b10c">&#9670;&nbsp;</a></span>bmw_parallel_context_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">finalize</td><td>Flag to call MPI_FINALIZE. Only used if MPI support has been compiled in. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a04761f7d52c7b6e5c82b6b281c72615d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a04761f7d52c7b6e5c82b6b281c72615d">&#9670;&nbsp;</a></span>bmw_parallel_context_end()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function bmw_parallel_context::bmw_parallel_context_end </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>total</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the end index of a flat array. </p>
-<p>The total problem size is divided by the number of processes. Any remaining elements are added to the first few processes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">total</td><td>Total number of elements in the loop. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The Ending index for parallel multiprocess computation. </dd></dl>
-
-</div>
-</div>
-<a id="aec73b8c93fe41dfa328b484bfd160a86"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aec73b8c93fe41dfa328b484bfd160a86">&#9670;&nbsp;</a></span>bmw_parallel_context_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function bmw_parallel_context::bmw_parallel_context_i </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the i index of a flat array. </p>
-<p>The total problem size represents a three dimensional space. From the flat index, compute the i index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Flat index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_i</td><td>Size of the ith dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The index of the i dimension. </dd></dl>
-
-</div>
-</div>
-<a id="a93940274cd09874ab96cf50faf19dbdd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a93940274cd09874ab96cf50faf19dbdd">&#9670;&nbsp;</a></span>bmw_parallel_context_j()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function bmw_parallel_context::bmw_parallel_context_j </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the j index of a flat array. </p>
-<p>The total problem size represents a three dimensional space. From the flat index, compute the j index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Flat index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_i</td><td>Size of the ith dimension. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_j</td><td>Size of the jth dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The index of the j dimension. </dd></dl>
-
-</div>
-</div>
-<a id="ad8a34abc76e29984d6c0778131aa85aa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad8a34abc76e29984d6c0778131aa85aa">&#9670;&nbsp;</a></span>bmw_parallel_context_k()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function bmw_parallel_context::bmw_parallel_context_k </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the k index of a flat array. </p>
-<p>The total problem size represents a three dimensional space. From the flat index, compute the k index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Flat index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_i</td><td>Size of the ith dimension. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_j</td><td>Size of the jth dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The index of the k dimension. </dd></dl>
-
-</div>
-</div>
-<a id="a925ba4b4dfce13b8244b9aeac6e080de"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a925ba4b4dfce13b8244b9aeac6e080de">&#9670;&nbsp;</a></span>bmw_parallel_context_reduce1()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_reduce1 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>buffer</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reduce parallel buffers. </p>
-<p>Reduce a buffer from all parallel processes. In the single processes case, this reduces to nothing. This reduces a 1D buffer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">buffer</td><td>Buffer to reduce. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9715fce597e8b148ebc3c05fde991eac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9715fce597e8b148ebc3c05fde991eac">&#9670;&nbsp;</a></span>bmw_parallel_context_reduce2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_reduce2 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>buffer</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reduce parallel buffers. </p>
-<p>Reduce a buffer from all parallel processes. In the single processes case, this reduces to nothing. This reduces a 2D buffer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">buffer</td><td>Buffer to reduce. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9bbf8d8fa7c25b3bbf3cf7ff819a76c6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9bbf8d8fa7c25b3bbf3cf7ff819a76c6">&#9670;&nbsp;</a></span>bmw_parallel_context_reduce3()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_reduce3 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>buffer</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reduce parallel buffers. </p>
-<p>Reduce a buffer from all parallel processes. In the single processes case, this reduces to nothing. This reduces a 3D buffer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">buffer</td><td>Buffer to reduce. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a169674bf06fe2076b717bf329c12e3e7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a169674bf06fe2076b717bf329c12e3e7">&#9670;&nbsp;</a></span>bmw_parallel_context_reduce4()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_reduce4 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>buffer</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reduce parallel buffers. </p>
-<p>Reduce a buffer from all parallel processes. In the single processes case, this reduces to nothing. This reduces a 4D buffer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">buffer</td><td>Buffer to reduce. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa943f42d724ebb57fe4ada59aa561391"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa943f42d724ebb57fe4ada59aa561391">&#9670;&nbsp;</a></span>bmw_parallel_context_report()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_report </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Report the number of parallel processes and threads. </p>
-<p>Provides a summary report if the number of threads and processes currently configured.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa155eebd5433ae179013d34b58392c9d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa155eebd5433ae179013d34b58392c9d">&#9670;&nbsp;</a></span>bmw_parallel_context_set_threads()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_parallel_context::bmw_parallel_context_set_threads </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_threads</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the number of threads. </p>
-<p>Sets the number of OpenMP threads to use.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_threads</td><td>Number of threads to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4e2382c07d73e07870c912c03a566f41"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e2382c07d73e07870c912c03a566f41">&#9670;&nbsp;</a></span>bmw_parallel_context_start()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function bmw_parallel_context::bmw_parallel_context_start </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>total</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the start index of a flat array. </p>
-<p>The total problem size is divided by the number of processes. Any remaining elements are added to the first few processes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">total</td><td>Total number of elements in the loop. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The Starting index for parallel multiprocess computation. </dd></dl>
-
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-</div>
-</div><!-- contents -->
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">bmw_run Module Reference</div>  </div>
-</div><!--header-->
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-
-<p>BMW is a code for extending fields belond the VMEC domain in a manner that ensures divergence free fields. BMW does a Biot-Savart volume integration of of the equilibrium current density to obtain a continous vector potential every where on the mgrid grid.  
-<a href="namespacebmw__run.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:afa90c7f63646592b6575981fbc57485d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__run.html#afa90c7f63646592b6575981fbc57485d">bmw_exec</a> (mgrid_file_name, wout_file_name, r_grid, z_grid, dphi, A_r, A_p, A_z)</td></tr>
-<tr class="memdesc:afa90c7f63646592b6575981fbc57485d"><td class="mdescLeft">&#160;</td><td class="mdescRight">BMW main program.  <a href="namespacebmw__run.html#afa90c7f63646592b6575981fbc57485d">More...</a><br /></td></tr>
-<tr class="separator:afa90c7f63646592b6575981fbc57485d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>BMW is a code for extending fields belond the VMEC domain in a manner that ensures divergence free fields. BMW does a Biot-Savart volume integration of of the equilibrium current density to obtain a continous vector potential every where on the mgrid grid. </p>
-<dl class="section author"><dt>Author</dt><dd>Mark Cianciosa</dd></dl>
-<p>Below is a brief discription of the major top level objects of the code. For discriptions of lower level objects consult the referenced top level objects.</p>
-<p><a class="el" href="namespacem__grid.html">m_grid</a> Object containing the vaccum field information. <a class="el" href="namespaceprimed__grid.html">primed_grid</a> Object containing the plasma currents and primed grid positions. <a class="el" href="namespaceunprimed__grid.html">unprimed_grid</a> Object containing the plasma vector potential response. <a class="el" href="namespacebmw__context.html">bmw_context</a> Defines the main pointers to all allocated memory and objects. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="afa90c7f63646592b6575981fbc57485d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afa90c7f63646592b6575981fbc57485d">&#9670;&nbsp;</a></span>bmw_exec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine bmw_run::bmw_exec </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>r_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>z_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>dphi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>A_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>A_p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>A_z</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>BMW main program. </p>
-<p>Highest level BMW routine. This computes the vector potential on the mgrid grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>Path to the mgrid file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_mame</td><td>Path to the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_grid</td><td>Radial grid points to compute the vector potential on. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_grid</td><td>Vertial grid points to compute the vector potential on. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dphi</td><td>Grid size in the phi direction. </td></tr>
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-<p>Contains parameters defining the bit positions for flags that mark different options.  
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacebmw__state__flags.html#a5efe932dc80f7db0a3e9185ab67f05d2">bmw_state_flags_mgrid</a> = 4</td></tr>
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diff --git a/html/namespacecombination.html b/html/namespacecombination.html
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-<a href="#nested-classes">Data Types</a> &#124;
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-<p>Defines the base class of the type <a class="el" href="structcombination_1_1combination__class.html">combination_class</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa424368e5acf7afd3c46a27bd46830cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af8f3a41c819d06a3b74ac594265c6e34"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a56bfb4b52d189e53d00793eef8b9c564"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ad4c88b061a3603e725e2219c3c75dab6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a412e97694c36c078c7c6b98f79ae0da5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a7541ae7f7054fd15f0a3255ef7692c21"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a24b7f5c7b70b0696a7098bb4039b7afb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#a24b7f5c7b70b0696a7098bb4039b7afb">combination_write_auxiliary</a> (this, iou, index, a_model)</td></tr>
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-<tr class="separator:a24b7f5c7b70b0696a7098bb4039b7afb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:abc413b0c59ba59e85feb9023a72294b6"><td class="memItemLeft" align="right" valign="top"><a id="abc413b0c59ba59e85feb9023a72294b6"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#abc413b0c59ba59e85feb9023a72294b6">combination_type_length</a> = 4</td></tr>
-<tr class="memdesc:abc413b0c59ba59e85feb9023a72294b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum length of the combination type descritpion string. <br /></td></tr>
-<tr class="separator:abc413b0c59ba59e85feb9023a72294b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a02c3674d186b3173e96d2ba2c37d361d"><td class="memItemLeft" align="right" valign="top"><a id="a02c3674d186b3173e96d2ba2c37d361d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#a02c3674d186b3173e96d2ba2c37d361d">combination_none</a> = -1</td></tr>
-<tr class="memdesc:a02c3674d186b3173e96d2ba2c37d361d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type descriptor for combination type no type. <br /></td></tr>
-<tr class="separator:a02c3674d186b3173e96d2ba2c37d361d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a888d991e311f44084acfa5038c99fb7a"><td class="memItemLeft" align="right" valign="top"><a id="a888d991e311f44084acfa5038c99fb7a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#a888d991e311f44084acfa5038c99fb7a">combination_sum</a> = 0</td></tr>
-<tr class="memdesc:a888d991e311f44084acfa5038c99fb7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type descriptor for combination type sum. <br /></td></tr>
-<tr class="separator:a888d991e311f44084acfa5038c99fb7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af79fd0ff4f5027061aa2e1ec66115bde"><td class="memItemLeft" align="right" valign="top"><a id="af79fd0ff4f5027061aa2e1ec66115bde"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#af79fd0ff4f5027061aa2e1ec66115bde">combination_max</a> = 1</td></tr>
-<tr class="memdesc:af79fd0ff4f5027061aa2e1ec66115bde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type descriptor for combination type max. <br /></td></tr>
-<tr class="separator:af79fd0ff4f5027061aa2e1ec66115bde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9a42fcb38d3b9c358d60e9778d399d4a"><td class="memItemLeft" align="right" valign="top"><a id="a9a42fcb38d3b9c358d60e9778d399d4a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#a9a42fcb38d3b9c358d60e9778d399d4a">combination_min</a> = 2</td></tr>
-<tr class="memdesc:a9a42fcb38d3b9c358d60e9778d399d4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type descriptor for combination type min. <br /></td></tr>
-<tr class="separator:a9a42fcb38d3b9c358d60e9778d399d4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9167df62730daf3a518be3872e8f40f6"><td class="memItemLeft" align="right" valign="top"><a id="a9167df62730daf3a518be3872e8f40f6"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecombination.html#a9167df62730daf3a518be3872e8f40f6">combination_wavg</a> = 3</td></tr>
-<tr class="memdesc:a9167df62730daf3a518be3872e8f40f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type descriptor for combination type weighted average. <br /></td></tr>
-<tr class="separator:a9167df62730daf3a518be3872e8f40f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structcombination_1_1combination__class.html">combination_class</a>. </p>
-<dl class="section user"><dt></dt><dd>combination Super Class: <a class="el" href="namespacesignal.html">signal</a> </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aa424368e5acf7afd3c46a27bd46830cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa424368e5acf7afd3c46a27bd46830cb">&#9670;&nbsp;</a></span>combination_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>) function, pointer combination::combination_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n_signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacecombination.html#abc413b0c59ba59e85feb9023a72294b6">combination_type_length</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>combination_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>wgt_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structcombination_1_1combination__class.html">combination_class</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> object. This just allocates the <a class="el" href="structcombination_1_1combination__class.html#ab62cd985db2fa5b020c9d45052a8294d">combination_class::signals</a> and <a class="el" href="structcombination_1_1combination__class.html#a1482ab624fb6af56f779e21d000aac35">combination_class::a</a> array. The indices of these arrays are set by <a class="el" href="namespacecombination.html#ad74e04a071b006a847dcff41dc686d24">combination_set_signal</a></p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">n_signals</td><td>Number of signals in this combination. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">combination_type</td><td>The method to combine the signals. Possible values are <a class="el" href="namespacecombination.html#a888d991e311f44084acfa5038c99fb7a">combination_sum</a>, <a class="el" href="namespacecombination.html#af79fd0ff4f5027061aa2e1ec66115bde">combination_max</a>, @ ref combination_min and <a class="el" href="namespacecombination.html#a9167df62730daf3a518be3872e8f40f6">combination_wavg</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wgt_index</td><td>Index number of the average weighting. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="af8f3a41c819d06a3b74ac594265c6e34"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af8f3a41c819d06a3b74ac594265c6e34">&#9670;&nbsp;</a></span>combination_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine combination::combination_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>The destructors of the signals in the signal array are not called her because the combination signals do not own the memory for those signals. </dd></dl>
-
-</div>
-</div>
-<a id="a7541ae7f7054fd15f0a3255ef7692c21"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7541ae7f7054fd15f0a3255ef7692c21">&#9670;&nbsp;</a></span>combination_get_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine combination::combination_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>Returns a description of the array indices for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname"></td><td></td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad4c88b061a3603e725e2219c3c75dab6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad4c88b061a3603e725e2219c3c75dab6">&#9670;&nbsp;</a></span>combination_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) combination::combination_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>This method combines the signals pointed in the <a class="el" href="structcombination_1_1combination__class.html#ab62cd985db2fa5b020c9d45052a8294d">combination_class::signals</a> array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a412e97694c36c078c7c6b98f79ae0da5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a412e97694c36c078c7c6b98f79ae0da5">&#9670;&nbsp;</a></span>combination_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function combination::combination_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the combination type. </p>
-<p>Returns a description of the combination type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the combination type. </dd></dl>
-
-</div>
-</div>
-<a id="ad74e04a071b006a847dcff41dc686d24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad74e04a071b006a847dcff41dc686d24">&#9670;&nbsp;</a></span>combination_set_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine combination::combination_set_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>a</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the object and coefficient for an index. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a</td><td>A coefficient for the signal </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>The index to place the combined <a class="el" href="namespacesignal.html">signal</a>. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>Only signals that were created before this combination can be added. Otherwise there it will creat an infinitely recursive loop in <a class="el" href="namespacecombination.html#ad4c88b061a3603e725e2219c3c75dab6">combination_get_modeled_signal</a> </dd></dl>
-
-</div>
-</div>
-<a id="a56bfb4b52d189e53d00793eef8b9c564"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a56bfb4b52d189e53d00793eef8b9c564">&#9670;&nbsp;</a></span>combination_set_weight()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine combination::combination_set_weight </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the weight factors from from the weight index. </p>
-<p>Only assumed valid when the combination type is weighted average. This also assumes that the average of only two signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a24b7f5c7b70b0696a7098bb4039b7afb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a24b7f5c7b70b0696a7098bb4039b7afb">&#9670;&nbsp;</a></span>combination_write_auxiliary()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine combination::combination_write_auxiliary </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structcombination_1_1combination__class.html">combination_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out auxiliary signal information to an output file. </p>
-<p>Writes out the s_name and coefficient of the combined signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">commandline_parser Module Reference</div>  </div>
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-<p>Defines the base class of the type <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a>.  
-<a href="namespacecommandline__parser.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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-<tr class="memitem:a99076252defdc0f0fc0d27c14915d90e"><td class="memItemLeft" align="right" valign="top">type(commandline_parser_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecommandline__parser.html#a99076252defdc0f0fc0d27c14915d90e">commandline_parser_construct</a> ()</td></tr>
-<tr class="memdesc:a99076252defdc0f0fc0d27c14915d90e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object.  <a href="namespacecommandline__parser.html#a99076252defdc0f0fc0d27c14915d90e">More...</a><br /></td></tr>
-<tr class="separator:a99076252defdc0f0fc0d27c14915d90e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a8ad1d93175eaeb85ac564202ca33c2df"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object.  <a href="namespacecommandline__parser.html#a8ad1d93175eaeb85ac564202ca33c2df">More...</a><br /></td></tr>
-<tr class="separator:a8ad1d93175eaeb85ac564202ca33c2df"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a4fa9c9359678bf34aabc5210f79fea68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as a string.  <a href="namespacecommandline__parser.html#a4fa9c9359678bf34aabc5210f79fea68">More...</a><br /></td></tr>
-<tr class="separator:a4fa9c9359678bf34aabc5210f79fea68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a52486b595e7a6cc39c1dff4facd86361"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecommandline__parser.html#a52486b595e7a6cc39c1dff4facd86361">commandline_parser_get_integer</a> (this, arg, default_value)</td></tr>
-<tr class="memdesc:a52486b595e7a6cc39c1dff4facd86361"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as an integer.  <a href="namespacecommandline__parser.html#a52486b595e7a6cc39c1dff4facd86361">More...</a><br /></td></tr>
-<tr class="separator:a52486b595e7a6cc39c1dff4facd86361"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a91ec23f6c65f725efb1f5653bc1ada81"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecommandline__parser.html#a91ec23f6c65f725efb1f5653bc1ada81">commandline_parser_get_real</a> (this, arg, default_value)</td></tr>
-<tr class="memdesc:a91ec23f6c65f725efb1f5653bc1ada81"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of an argument as a Real.  <a href="namespacecommandline__parser.html#a91ec23f6c65f725efb1f5653bc1ada81">More...</a><br /></td></tr>
-<tr class="separator:a91ec23f6c65f725efb1f5653bc1ada81"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adc7b15362f07614c3be7530f42f7f03b"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecommandline__parser.html#adc7b15362f07614c3be7530f42f7f03b">commandline_parser_is_flag_set</a> (this, arg)</td></tr>
-<tr class="memdesc:adc7b15362f07614c3be7530f42f7f03b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a command line argument was set.  <a href="namespacecommandline__parser.html#adc7b15362f07614c3be7530f42f7f03b">More...</a><br /></td></tr>
-<tr class="separator:adc7b15362f07614c3be7530f42f7f03b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab338f0dd25dbf3f22f5bed56b8a23818"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecommandline__parser.html#ab338f0dd25dbf3f22f5bed56b8a23818">commandline_parser_print_help</a></td></tr>
-<tr class="memdesc:ab338f0dd25dbf3f22f5bed56b8a23818"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out help text.  <a href="namespacecommandline__parser.html#ab338f0dd25dbf3f22f5bed56b8a23818">More...</a><br /></td></tr>
-<tr class="separator:ab338f0dd25dbf3f22f5bed56b8a23818"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a99076252defdc0f0fc0d27c14915d90e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a99076252defdc0f0fc0d27c14915d90e">&#9670;&nbsp;</a></span>commandline_parser_construct()</h2>
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-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object. The command line is parsed assuming the the flags take the form of -flag=value. If the '=' is missing, it is assumed there is no value. If the '-' is missing the flag is treated as the value to an implicit -file flag. If -h is is found, the help text is printed out and the program terminated.</p>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object. </dd></dl>
-
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-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a8ad1d93175eaeb85ac564202ca33c2df">&#9670;&nbsp;</a></span>commandline_parser_destruct()</h2>
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-          <td class="memname">subroutine commandline_parser::commandline_parser_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a52486b595e7a6cc39c1dff4facd86361"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a52486b595e7a6cc39c1dff4facd86361">&#9670;&nbsp;</a></span>commandline_parser_get_integer()</h2>
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-          <td class="memname">integer function commandline_parser::commandline_parser_get_integer </td>
-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
-        </tr>
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-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as an integer. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="a91ec23f6c65f725efb1f5653bc1ada81"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a91ec23f6c65f725efb1f5653bc1ada81">&#9670;&nbsp;</a></span>commandline_parser_get_real()</h2>
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-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
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-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as a Real. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
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-</div>
-<a id="a4fa9c9359678bf34aabc5210f79fea68"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4fa9c9359678bf34aabc5210f79fea68">&#9670;&nbsp;</a></span>commandline_parser_get_string()</h2>
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-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-
-<p>Get the value of an argument as a string. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found or no value was set, a blank string is returned. command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="adc7b15362f07614c3be7530f42f7f03b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adc7b15362f07614c3be7530f42f7f03b">&#9670;&nbsp;</a></span>commandline_parser_is_flag_set()</h2>
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-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>&#160;</td>
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-          <td>)</td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Check if a command line argument was set. </p>
-<p>Searches the parsed command line flags for a matching command line argument. If no matching argument is found the flag was not set.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the argument was found, false if it was not found. </dd></dl>
-
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-<h2 class="memtitle"><span class="permalink"><a href="#ab338f0dd25dbf3f22f5bed56b8a23818">&#9670;&nbsp;</a></span>commandline_parser_print_help()</h2>
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-      </table>
-</div><div class="memdoc">
-
-<p>Print out help text. </p>
-<p>Command line help text should take the form of '-flag' that is maximum length of max_arg_length followed by a space. A Y or N indicating the flag takes a value or not followed by a space. A short message describing the flag. A reference for all the command line arguments can be found at <a class="el" href="cl_parsing_sec.html">Command Line Arguments</a>. </p>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<p>Defines the base class of the type <a class="el" href="structcompression_1_1compression__class.html">compression_class</a>. This class contains the code and buffers to hold compressed and uncompressed data. 2D matrix data is compressed using a singular value decomposition. See del-Castillo-Negrete et. al. doi:10.1016/j.jcp.2006.07.022.  
-<a href="namespacecompression.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structcompression_1_1compression__class.html">compression_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class containing buffers for compressed and uncompressed data.  <a href="structcompression_1_1compression__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structcompression_1_1compression__pointer.html">compression_pointer</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer to a compression object. Used for creating arrays of compression pointers. This is needed because fortran does not allow arrays of pointers directly.  <a href="structcompression_1_1compression__pointer.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacecompression_1_1compression__construct.html">compression_construct</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for the construction of <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> types using <a class="el" href="interfacecompression_1_1compression__construct.html#a761cfee279aa8c0a332f3e37788c89dd">compression_construct_new</a> or <a class="el" href="interfacecompression_1_1compression__construct.html#a58461e3b568b600b5caa425b944acf2a">compression_construct_netcdf</a>.  <a href="interfacecompression_1_1compression__construct.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a374ff9c1854bdd9ddf649a9d912e722b"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a374ff9c1854bdd9ddf649a9d912e722b">compression_construct_new</a> (data_in, svd_cut_off)</td></tr>
-<tr class="memdesc:a374ff9c1854bdd9ddf649a9d912e722b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object.  <a href="namespacecompression.html#a374ff9c1854bdd9ddf649a9d912e722b">More...</a><br /></td></tr>
-<tr class="separator:a374ff9c1854bdd9ddf649a9d912e722b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:addd8fd5d4e138309440cb7e8559e330c"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#addd8fd5d4e138309440cb7e8559e330c">compression_construct_netcdf</a> (ncid, name)</td></tr>
-<tr class="memdesc:addd8fd5d4e138309440cb7e8559e330c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object by reading from an netcdf. file.  <a href="namespacecompression.html#addd8fd5d4e138309440cb7e8559e330c">More...</a><br /></td></tr>
-<tr class="separator:addd8fd5d4e138309440cb7e8559e330c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a14aa25aba287182cea64f7789d1a7470"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a14aa25aba287182cea64f7789d1a7470">compression_destruct</a> (this)</td></tr>
-<tr class="memdesc:a14aa25aba287182cea64f7789d1a7470"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object.  <a href="namespacecompression.html#a14aa25aba287182cea64f7789d1a7470">More...</a><br /></td></tr>
-<tr class="separator:a14aa25aba287182cea64f7789d1a7470"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa23b99d097b901f2a1cbbe1533ee801f"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#aa23b99d097b901f2a1cbbe1533ee801f">compression_get_dimension1</a> (this)</td></tr>
-<tr class="memdesc:aa23b99d097b901f2a1cbbe1533ee801f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ith dimension length.  <a href="namespacecompression.html#aa23b99d097b901f2a1cbbe1533ee801f">More...</a><br /></td></tr>
-<tr class="separator:aa23b99d097b901f2a1cbbe1533ee801f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a30f1e8e58af934eee4f4c16860d7ffee"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a30f1e8e58af934eee4f4c16860d7ffee">compression_get_dimension2</a> (this)</td></tr>
-<tr class="memdesc:a30f1e8e58af934eee4f4c16860d7ffee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the jth dimension length.  <a href="namespacecompression.html#a30f1e8e58af934eee4f4c16860d7ffee">More...</a><br /></td></tr>
-<tr class="separator:a30f1e8e58af934eee4f4c16860d7ffee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab818c36a76e5969c618fdb0b029ae26a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#ab818c36a76e5969c618fdb0b029ae26a">compression_decompress</a> (this)</td></tr>
-<tr class="memdesc:ab818c36a76e5969c618fdb0b029ae26a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Decompress the data.  <a href="namespacecompression.html#ab818c36a76e5969c618fdb0b029ae26a">More...</a><br /></td></tr>
-<tr class="separator:ab818c36a76e5969c618fdb0b029ae26a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff0c464eedbab24c1fed7d53a2e45e83"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#aff0c464eedbab24c1fed7d53a2e45e83">compression_cleanup</a> (this)</td></tr>
-<tr class="memdesc:aff0c464eedbab24c1fed7d53a2e45e83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cleanup decompressed data.  <a href="namespacecompression.html#aff0c464eedbab24c1fed7d53a2e45e83">More...</a><br /></td></tr>
-<tr class="separator:aff0c464eedbab24c1fed7d53a2e45e83"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adf15bf47e6d8b412a3e005b14434123b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#adf15bf47e6d8b412a3e005b14434123b">compression_define</a> (this, ncid, name)</td></tr>
-<tr class="memdesc:adf15bf47e6d8b412a3e005b14434123b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define variables for the compressed data.  <a href="namespacecompression.html#adf15bf47e6d8b412a3e005b14434123b">More...</a><br /></td></tr>
-<tr class="separator:adf15bf47e6d8b412a3e005b14434123b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33d3faf69aa53830611e73026b91133f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a33d3faf69aa53830611e73026b91133f">compression_write</a> (this, ncid, name)</td></tr>
-<tr class="memdesc:a33d3faf69aa53830611e73026b91133f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cleanup decompressed data.  <a href="namespacecompression.html#a33d3faf69aa53830611e73026b91133f">More...</a><br /></td></tr>
-<tr class="separator:a33d3faf69aa53830611e73026b91133f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a047d603ca70768cadd6c0ada8f658b0b"><td class="memItemLeft" align="right" valign="top"><a id="a047d603ca70768cadd6c0ada8f658b0b"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a047d603ca70768cadd6c0ada8f658b0b">compression_max_percentage</a> = 100.0</td></tr>
-<tr class="memdesc:a047d603ca70768cadd6c0ada8f658b0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum compressed size before uncompressed buffers are stored. <br /></td></tr>
-<tr class="separator:a047d603ca70768cadd6c0ada8f658b0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad14e12bef81b2e0e48eb162d87dd99c3"><td class="memItemLeft" align="right" valign="top"><a id="ad14e12bef81b2e0e48eb162d87dd99c3"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#ad14e12bef81b2e0e48eb162d87dd99c3">compression_data_buffer_post</a> = 'data_buffer'</td></tr>
-<tr class="memdesc:ad14e12bef81b2e0e48eb162d87dd99c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Postfix for the data buffer. <br /></td></tr>
-<tr class="separator:ad14e12bef81b2e0e48eb162d87dd99c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9a3368b3f6e2b312a37cfcd2601f6f97"><td class="memItemLeft" align="right" valign="top"><a id="a9a3368b3f6e2b312a37cfcd2601f6f97"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a9a3368b3f6e2b312a37cfcd2601f6f97">compression_u_buffer_post</a> = 'u_buffer'</td></tr>
-<tr class="memdesc:a9a3368b3f6e2b312a37cfcd2601f6f97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Postfix for the data buffer. <br /></td></tr>
-<tr class="separator:a9a3368b3f6e2b312a37cfcd2601f6f97"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0078349e7cc78c42a91e26272e0464c7"><td class="memItemLeft" align="right" valign="top"><a id="a0078349e7cc78c42a91e26272e0464c7"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a0078349e7cc78c42a91e26272e0464c7">compression_wvt_buffer_post</a> = 'wvt_buffer'</td></tr>
-<tr class="memdesc:a0078349e7cc78c42a91e26272e0464c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Postfix for the data buffer. <br /></td></tr>
-<tr class="separator:a0078349e7cc78c42a91e26272e0464c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08ebd43cb48dbea29acace13b3c48d22"><td class="memItemLeft" align="right" valign="top"><a id="a08ebd43cb48dbea29acace13b3c48d22"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecompression.html#a08ebd43cb48dbea29acace13b3c48d22">compression_data_dim_post</a> = 'data_dim'</td></tr>
-<tr class="memdesc:a08ebd43cb48dbea29acace13b3c48d22"><td class="mdescLeft">&#160;</td><td class="mdescRight">Postfix for the data buffer. <br /></td></tr>
-<tr class="separator:a08ebd43cb48dbea29acace13b3c48d22"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structcompression_1_1compression__class.html">compression_class</a>. This class contains the code and buffers to hold compressed and uncompressed data. 2D matrix data is compressed using a singular value decomposition. See del-Castillo-Negrete et. al. doi:10.1016/j.jcp.2006.07.022. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aff0c464eedbab24c1fed7d53a2e45e83"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aff0c464eedbab24c1fed7d53a2e45e83">&#9670;&nbsp;</a></span>compression_cleanup()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine compression::compression_cleanup </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Cleanup decompressed data. </p>
-<p>If the data dimensions arrays or the U and WVT is allocated, then delete the data buffer. Otherwise the data is stored uncompressed.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="addd8fd5d4e138309440cb7e8559e330c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#addd8fd5d4e138309440cb7e8559e330c">&#9670;&nbsp;</a></span>compression_construct_netcdf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>) function, pointer compression::compression_construct_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object by reading from an netcdf. file. </p>
-<p>Constructs data from a precompressed netcdf file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>A netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>A netcdf variable name id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Flag discribing how the data was compressed. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a374ff9c1854bdd9ddf649a9d912e722b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a374ff9c1854bdd9ddf649a9d912e722b">&#9670;&nbsp;</a></span>compression_construct_new()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>) function, pointer compression::compression_construct_new </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>data_in</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object. </p>
-<p>Constructs compression object and compresses the data buffer if compression meets the specified criteria.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">data_in</td><td>Data buffer to compress. This gets copied to the internal storage buffer. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svn_cut_off</td><td>Cutoff value for determining the number of singular values to use for compression. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ab818c36a76e5969c618fdb0b029ae26a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab818c36a76e5969c618fdb0b029ae26a">&#9670;&nbsp;</a></span>compression_decompress()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine compression::compression_decompress </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Decompress the data. </p>
-<p>Checks if the U and WVT arrays are allocated. If they are not the data_buffer was left uncompressed. If the data dimensions is also unallocated, then the orginal data buffer was all zeros otherwise data is uncompressed by matrix a multiplication.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adf15bf47e6d8b412a3e005b14434123b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adf15bf47e6d8b412a3e005b14434123b">&#9670;&nbsp;</a></span>compression_define()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine compression::compression_define </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Define variables for the compressed data. </p>
-<p>Defines the netcdf variables for writting compressed data to a netcdf file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Base name of variables to compress. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The flag indicating which buffer was stored. </dd></dl>
-
-</div>
-</div>
-<a id="a14aa25aba287182cea64f7789d1a7470"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a14aa25aba287182cea64f7789d1a7470">&#9670;&nbsp;</a></span>compression_destruct()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine compression::compression_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa23b99d097b901f2a1cbbe1533ee801f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa23b99d097b901f2a1cbbe1533ee801f">&#9670;&nbsp;</a></span>compression_get_dimension1()</h2>
-
-<div class="memitem">
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-          <td class="memname">integer function compression::compression_get_dimension1 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ith dimension length. </p>
-<p>Retrives the uncompressed dimension of the first data buffer index. This can be used without needing to decompress the data first.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The size of the ith dimension of the uncompressed data buffer. </dd></dl>
-
-</div>
-</div>
-<a id="a30f1e8e58af934eee4f4c16860d7ffee"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a30f1e8e58af934eee4f4c16860d7ffee">&#9670;&nbsp;</a></span>compression_get_dimension2()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">integer function compression::compression_get_dimension2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the jth dimension length. </p>
-<p>Retrives the uncompressed dimension of the second data buffer index. This can be used without needing to decompress the data first.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The size of the jth dimension of the uncompressed data buffer. </dd></dl>
-
-</div>
-</div>
-<a id="a33d3faf69aa53830611e73026b91133f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a33d3faf69aa53830611e73026b91133f">&#9670;&nbsp;</a></span>compression_write()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine compression::compression_write </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structcompression_1_1compression__class.html">compression_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Cleanup decompressed data. </p>
-<p>If the data dimensions arrays or the U and WVT is allocated, then delete the data buffer. Otherwise the data is stored uncompressed.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>A netcdf file handle. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>The name to write the variable to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">coordinate_utilities Module Reference</div>  </div>
-</div><!--header-->
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-
-<p>Module is part of the LIBSTELL. This modules containes code to convert from different coordinate systems.  
-<a href="namespacecoordinate__utilities.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:af0fe6842f6ce610bcb7be09b9b2d2739"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function, dimension(3), public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecoordinate__utilities.html#af0fe6842f6ce610bcb7be09b9b2d2739">cart_to_cyl</a> (cart)</td></tr>
-<tr class="memdesc:af0fe6842f6ce610bcb7be09b9b2d2739"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a point from cartes cartesian coordinates to cylindical coordinates.  <a href="namespacecoordinate__utilities.html#af0fe6842f6ce610bcb7be09b9b2d2739">More...</a><br /></td></tr>
-<tr class="separator:af0fe6842f6ce610bcb7be09b9b2d2739"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a51949672f1c2a60753327fa3f40a4d4c"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function, dimension(3), public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecoordinate__utilities.html#a51949672f1c2a60753327fa3f40a4d4c">cyl_to_cart</a> (cyl)</td></tr>
-<tr class="memdesc:a51949672f1c2a60753327fa3f40a4d4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a point from cylindical coordinates to cartesian coordinates.  <a href="namespacecoordinate__utilities.html#a51949672f1c2a60753327fa3f40a4d4c">More...</a><br /></td></tr>
-<tr class="separator:a51949672f1c2a60753327fa3f40a4d4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adb7ff5eab44f20841ba5300d94aa8f93"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function, dimension(3), public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecoordinate__utilities.html#adb7ff5eab44f20841ba5300d94aa8f93">cyl_to_cart_vec</a> (cyl, vec)</td></tr>
-<tr class="memdesc:adb7ff5eab44f20841ba5300d94aa8f93"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert vector from cylindical coordinates to cartesian coordinates.  <a href="namespacecoordinate__utilities.html#adb7ff5eab44f20841ba5300d94aa8f93">More...</a><br /></td></tr>
-<tr class="separator:adb7ff5eab44f20841ba5300d94aa8f93"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af7a6a6a429462c1ee96c0cbd83f269ac"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecoordinate__utilities.html#af7a6a6a429462c1ee96c0cbd83f269ac">cart_to_cyl_vec</a> (cart, vec)</td></tr>
-<tr class="memdesc:af7a6a6a429462c1ee96c0cbd83f269ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert vector from cartesian coordinates to cylindical coordinates.  <a href="namespacecoordinate__utilities.html#af7a6a6a429462c1ee96c0cbd83f269ac">More...</a><br /></td></tr>
-<tr class="separator:af7a6a6a429462c1ee96c0cbd83f269ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad872577917f921d27c96c7161d2ae65b"><td class="memItemLeft" align="right" valign="top">logical function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacecoordinate__utilities.html#ad872577917f921d27c96c7161d2ae65b">cood_utils_test</a> ()</td></tr>
-<tr class="memdesc:ad872577917f921d27c96c7161d2ae65b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coordinate utilities unit test function.  <a href="namespacecoordinate__utilities.html#ad872577917f921d27c96c7161d2ae65b">More...</a><br /></td></tr>
-<tr class="separator:ad872577917f921d27c96c7161d2ae65b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module is part of the LIBSTELL. This modules containes code to convert from different coordinate systems. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="af0fe6842f6ce610bcb7be09b9b2d2739"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af0fe6842f6ce610bcb7be09b9b2d2739">&#9670;&nbsp;</a></span>cart_to_cyl()</h2>
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-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>cart</em></td><td>)</td>
-          <td></td>
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-      </table>
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-<p>Convert a point from cartes cartesian coordinates to cylindical coordinates. </p>
-<p>r = Sqrt(x*x + y*y) phi = atan(y/x) z = z</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">cart</td><td>Point in cartesian coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The point in cyclindical coordinates. </dd></dl>
-
-</div>
-</div>
-<a id="af7a6a6a429462c1ee96c0cbd83f269ac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af7a6a6a429462c1ee96c0cbd83f269ac">&#9670;&nbsp;</a></span>cart_to_cyl_vec()</h2>
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-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>cart</em>, </td>
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-          <td class="paramname"><em>vec</em>&#160;</td>
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-<p>Convert vector from cartesian coordinates to cylindical coordinates. </p>
-<p>[ v_r ] [ x/r y/r 0 ] [ v_x ] [ v_phi ] = [ -y/r x/r 0 ] * [ v_y ] [ v_z ] [ 0 0 1 ] [ v_z ]</p>
-<p>Where r = Sqrt(x*x + y*y)</p>
-<dl class="section note"><dt>Note</dt><dd>Phi must be in radians.</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">cart</td><td>Point in cartesian coordinates. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vec</td><td>Point in cartesian coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The point in cylindical coordinates. </dd></dl>
-
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-<a id="ad872577917f921d27c96c7161d2ae65b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad872577917f921d27c96c7161d2ae65b">&#9670;&nbsp;</a></span>cood_utils_test()</h2>
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-<p>Coordinate utilities unit test function. </p>
-<p>This runs the associated unit tests and returns the result.</p>
-<dl class="section return"><dt>Returns</dt><dd>True if the tests pass and false otherwise. </dd></dl>
-
-</div>
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-<a id="a51949672f1c2a60753327fa3f40a4d4c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a51949672f1c2a60753327fa3f40a4d4c">&#9670;&nbsp;</a></span>cyl_to_cart()</h2>
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-          <td class="memname">pure real (rprec) function, dimension(3), public coordinate_utilities::cyl_to_cart </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert a point from cylindical coordinates to cartesian coordinates. </p>
-<p>x = r*cos(phi) y = r*sin(phi) z = z</p>
-<dl class="section note"><dt>Note</dt><dd>Phi must be in radians.</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">cyl</td><td>Point in cylindical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The point in cartesian coordinates. </dd></dl>
-
-</div>
-</div>
-<a id="adb7ff5eab44f20841ba5300d94aa8f93"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adb7ff5eab44f20841ba5300d94aa8f93">&#9670;&nbsp;</a></span>cyl_to_cart_vec()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">pure real (rprec) function, dimension(3), public coordinate_utilities::cyl_to_cart_vec </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>vec</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Convert vector from cylindical coordinates to cartesian coordinates. </p>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<p>This modules contains parameters used by equilibrium models.  
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-<tr class="memdesc:afd4da7f97f57179af3465af7d21d4462"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of Gaussian Process signals. Total number of auxillary profiles. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This modules contains parameters used by equilibrium models. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aef2c3fbb620ec73a343d52400c790d6b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aef2c3fbb620ec73a343d52400c790d6b">&#9670;&nbsp;</a></span>filename_base()</h2>
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-<p>Generates a base filename. </p>
-<p>Parses the filename to generate a base name. Looks for a v3fit. and trims off the remainder.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">filename</td><td>The file name of the input file. </td></tr>
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-<a class="el" href="namespaceequilibrium.html" title="Defines the base class of the type equilibrium_class. Equilibrium is an abstract interface to the equ...">equilibrium</a> </dd></dl>
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-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">diagnostic_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a diagnostic dot file. The file format for these files are documented in <a class="el" href="diagnostic_dot_sec.html">Magnetic Diagnostic Dot File</a>.  
-<a href="namespacediagnostic__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A single coil. A coil set is structured as a singly linked list.  <a href="structdiagnostic__dot_1_1diagnostic__dot__coil.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1ae5f7b4b92c59153c80fe9ad3adc0c2"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a1ae5f7b4b92c59153c80fe9ad3adc0c2">diagnostic_dot_construct</a> (filename)</td></tr>
-<tr class="memdesc:a1ae5f7b4b92c59153c80fe9ad3adc0c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the coil diagnostics.  <a href="namespacediagnostic__dot.html#a1ae5f7b4b92c59153c80fe9ad3adc0c2">More...</a><br /></td></tr>
-<tr class="separator:a1ae5f7b4b92c59153c80fe9ad3adc0c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e04deca58d6e03863560a6cf9480862"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a4e04deca58d6e03863560a6cf9480862">diagnostic_dot_destruct</a> (list)</td></tr>
-<tr class="memdesc:a4e04deca58d6e03863560a6cf9480862"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> list.  <a href="namespacediagnostic__dot.html#a4e04deca58d6e03863560a6cf9480862">More...</a><br /></td></tr>
-<tr class="separator:a4e04deca58d6e03863560a6cf9480862"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a18ba86d03a4597202659a734ecc44e61"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a18ba86d03a4597202659a734ecc44e61">diagnostic_dot_error</a> (subject, line, line_number, caller)</td></tr>
-<tr class="memdesc:a18ba86d03a4597202659a734ecc44e61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Report error.  <a href="namespacediagnostic__dot.html#a18ba86d03a4597202659a734ecc44e61">More...</a><br /></td></tr>
-<tr class="separator:a18ba86d03a4597202659a734ecc44e61"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a227bf06118466b5d308653165924f1e2"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacediagnostic__dot.html#a02402cf3f0f755ab658bd4b9e642a84b">diagnostic_dot_id_name</a>) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a227bf06118466b5d308653165924f1e2">diagnostic_dot_parse_name</a> (iou, line, line_number, caller)</td></tr>
-<tr class="memdesc:a227bf06118466b5d308653165924f1e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a name.  <a href="namespacediagnostic__dot.html#a227bf06118466b5d308653165924f1e2">More...</a><br /></td></tr>
-<tr class="separator:a227bf06118466b5d308653165924f1e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae7ebddaddbf62a1fddf8e671671732cc"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#ae7ebddaddbf62a1fddf8e671671732cc">diagnostic_dot_parse_real</a> (iou, line, line_number, caller)</td></tr>
-<tr class="memdesc:ae7ebddaddbf62a1fddf8e671671732cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a real.  <a href="namespacediagnostic__dot.html#ae7ebddaddbf62a1fddf8e671671732cc">More...</a><br /></td></tr>
-<tr class="separator:ae7ebddaddbf62a1fddf8e671671732cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:affc01f9d2ac71143e7904d55e89202a1"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#affc01f9d2ac71143e7904d55e89202a1">diagnostic_dot_parse_node</a> (iou, line, line_number, status)</td></tr>
-<tr class="memdesc:affc01f9d2ac71143e7904d55e89202a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a node.  <a href="namespacediagnostic__dot.html#affc01f9d2ac71143e7904d55e89202a1">More...</a><br /></td></tr>
-<tr class="separator:affc01f9d2ac71143e7904d55e89202a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aab9915668ed324642ff20237a0cdc0b4"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#aab9915668ed324642ff20237a0cdc0b4">diagnostic_dot_parse_node4</a> (iou, line, line_number, status)</td></tr>
-<tr class="memdesc:aab9915668ed324642ff20237a0cdc0b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a node with sensitivity.  <a href="namespacediagnostic__dot.html#aab9915668ed324642ff20237a0cdc0b4">More...</a><br /></td></tr>
-<tr class="separator:aab9915668ed324642ff20237a0cdc0b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4e5a8aaf7ad89030127eac8463199dc4"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a4e5a8aaf7ad89030127eac8463199dc4">diagnostic_dot_parse_s_rogowski</a> (iou, line, line_number)</td></tr>
-<tr class="memdesc:a4e5a8aaf7ad89030127eac8463199dc4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse coils defined by filaments connected in series.  <a href="namespacediagnostic__dot.html#a4e5a8aaf7ad89030127eac8463199dc4">More...</a><br /></td></tr>
-<tr class="separator:a4e5a8aaf7ad89030127eac8463199dc4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adb38cdf0684f49c2175c8d9d4beeaa25"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#adb38cdf0684f49c2175c8d9d4beeaa25">diagnostic_dot_parse_filaments</a> (iou, line, line_number, is_rogowski, units)</td></tr>
-<tr class="memdesc:adb38cdf0684f49c2175c8d9d4beeaa25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse coils defined by filaments.  <a href="namespacediagnostic__dot.html#adb38cdf0684f49c2175c8d9d4beeaa25">More...</a><br /></td></tr>
-<tr class="separator:adb38cdf0684f49c2175c8d9d4beeaa25"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9de92c91a7826d605980cb33897125f9"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a9de92c91a7826d605980cb33897125f9">diagnostic_dot_parse_probe</a> (iou, line, line_number, is_tokamak, units)</td></tr>
-<tr class="memdesc:a9de92c91a7826d605980cb33897125f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a circular flux loop or magnetic probe.  <a href="namespacediagnostic__dot.html#a9de92c91a7826d605980cb33897125f9">More...</a><br /></td></tr>
-<tr class="separator:a9de92c91a7826d605980cb33897125f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa5ee9853379e35c5f33aa088f1a38ddd"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#aa5ee9853379e35c5f33aa088f1a38ddd">diagnostic_dot_parse_point</a> (iou, line, line_number, units, is_cart)</td></tr>
-<tr class="memdesc:aa5ee9853379e35c5f33aa088f1a38ddd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a point field measurement.  <a href="namespacediagnostic__dot.html#aa5ee9853379e35c5f33aa088f1a38ddd">More...</a><br /></td></tr>
-<tr class="separator:aa5ee9853379e35c5f33aa088f1a38ddd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ad8071bcb818b93b68608e8275d0a3017"><td class="memItemLeft" align="right" valign="top"><a id="ad8071bcb818b93b68608e8275d0a3017"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a> = 200</td></tr>
-<tr class="memdesc:ad8071bcb818b93b68608e8275d0a3017"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum line length. <br /></td></tr>
-<tr class="separator:ad8071bcb818b93b68608e8275d0a3017"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a02402cf3f0f755ab658bd4b9e642a84b"><td class="memItemLeft" align="right" valign="top"><a id="a02402cf3f0f755ab658bd4b9e642a84b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacediagnostic__dot.html#a02402cf3f0f755ab658bd4b9e642a84b">diagnostic_dot_id_name</a> = 30</td></tr>
-<tr class="memdesc:a02402cf3f0f755ab658bd4b9e642a84b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum id name. <br /></td></tr>
-<tr class="separator:a02402cf3f0f755ab658bd4b9e642a84b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a diagnostic dot file. The file format for these files are documented in <a class="el" href="diagnostic_dot_sec.html">Magnetic Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a1ae5f7b4b92c59153c80fe9ad3adc0c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1ae5f7b4b92c59153c80fe9ad3adc0c2">&#9670;&nbsp;</a></span>diagnostic_dot_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer diagnostic_dot::diagnostic_dot_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>filename</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct the coil diagnostics. </p>
-<p>Allocates memory and initializes all the diagnostic coils by parseing the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">filename</td><td>File name of the diagnostic dot file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to the constructed coil. </dd></dl>
-
-</div>
-</div>
-<a id="a4e04deca58d6e03863560a6cf9480862"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e04deca58d6e03863560a6cf9480862">&#9670;&nbsp;</a></span>diagnostic_dot_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine diagnostic_dot::diagnostic_dot_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>), pointer&#160;</td>
-          <td class="paramname"><em>list</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> list. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> list.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> list. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a18ba86d03a4597202659a734ecc44e61"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a18ba86d03a4597202659a734ecc44e61">&#9670;&nbsp;</a></span>diagnostic_dot_error()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine diagnostic_dot::diagnostic_dot_error </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>subject</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>caller</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Report error. </p>
-<p>Errors are formatted the the subject, line, line_number and calling function. This subroutine does not return so there is no need for profiling information.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">subject</td><td>Description of what caused the error. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">line</td><td>The current line of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">caller</td><td>Name of the calling function. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adb38cdf0684f49c2175c8d9d4beeaa25"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adb38cdf0684f49c2175c8d9d4beeaa25">&#9670;&nbsp;</a></span>diagnostic_dot_parse_filaments()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer diagnostic_dot::diagnostic_dot_parse_filaments </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_rogowski</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>units</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse coils defined by filaments. </p>
-<p>Parses a diagnostic flux loop. Flux loops are defined by an id and an arbitrary number of nodes. Rogowski coils are defined by an id. Next is the number of turn and area. The guild center is defined as an arbitrary number of nodes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_rogowski</td><td>Parse the filaments as a rogowski coil. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">units</td><td>Units the coil measures in. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> instance. </dd></dl>
-
-</div>
-</div>
-<a id="a227bf06118466b5d308653165924f1e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a227bf06118466b5d308653165924f1e2">&#9670;&nbsp;</a></span>diagnostic_dot_parse_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=<a class="el" href="namespacediagnostic__dot.html#a02402cf3f0f755ab658bd4b9e642a84b">diagnostic_dot_id_name</a>) function diagnostic_dot::diagnostic_dot_parse_name </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>caller</em>&#160;</td>
-        </tr>
-        <tr>
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-          <td>)</td>
-          <td></td><td></td>
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-
-<p>Parse a name. </p>
-<p>Reads a name and from the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">caller</td><td>Name of the calling function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A name. </dd></dl>
-
-</div>
-</div>
-<a id="affc01f9d2ac71143e7904d55e89202a1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#affc01f9d2ac71143e7904d55e89202a1">&#9670;&nbsp;</a></span>diagnostic_dot_parse_node()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) diagnostic_dot::diagnostic_dot_parse_node </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>status</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a node. </p>
-<p>Reads a single node and from the diagnostic dot file. Node may be arbitrary in length. Leave error handling up to the caller.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">status</td><td>The result of the read attempt. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A real. </dd></dl>
-
-</div>
-</div>
-<a id="aab9915668ed324642ff20237a0cdc0b4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aab9915668ed324642ff20237a0cdc0b4">&#9670;&nbsp;</a></span>diagnostic_dot_parse_node4()</h2>
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-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) diagnostic_dot::diagnostic_dot_parse_node4 </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>status</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a node with sensitivity. </p>
-<p>Reads a single node and from the diagnostic dot file. Node may be arbitrary in length. Leave error handling up to the caller. The node contains a sensisitivity value for the calibration as well.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">status</td><td>The result of the read attempt. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A real. </dd></dl>
-
-</div>
-</div>
-<a id="aa5ee9853379e35c5f33aa088f1a38ddd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa5ee9853379e35c5f33aa088f1a38ddd">&#9670;&nbsp;</a></span>diagnostic_dot_parse_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer diagnostic_dot::diagnostic_dot_parse_point </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>units</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a point field measurement. </p>
-<p>Parses point measurement probe. Point measurements are defined as a point and direction. The direction should be normalized. The phi_offset model is easiest to use when dealing with cyclindical coordinates. Convert all points to cyclindical coordinates for internal purposes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">units</td><td>Units the coil measures in. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_cart</td><td>True is point and vector defined in cylindrical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> instance. </dd></dl>
-
-</div>
-</div>
-<a id="a9de92c91a7826d605980cb33897125f9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9de92c91a7826d605980cb33897125f9">&#9670;&nbsp;</a></span>diagnostic_dot_parse_probe()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer diagnostic_dot::diagnostic_dot_parse_probe </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_tokamak</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>units</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a circular flux loop or magnetic probe. </p>
-<p>Parses a diagnostic flux loop or magnetic probe. Flux loops and probes are defined by an id, the radius, the center and the normal vector. Since this has a fixed number of reads, the next line must be read before the function returns.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_tokamak</td><td>Parse the probe as a tokamak coil. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">units</td><td>Units the coil measures in. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> instance. </dd></dl>
-
-</div>
-</div>
-<a id="ae7ebddaddbf62a1fddf8e671671732cc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae7ebddaddbf62a1fddf8e671671732cc">&#9670;&nbsp;</a></span>diagnostic_dot_parse_real()</h2>
-
-<div class="memitem">
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-          <td class="memname">real (rprec) function diagnostic_dot::diagnostic_dot_parse_real </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>caller</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a real. </p>
-<p>Reads a single real and from the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">caller</td><td>Name of the calling function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A real. </dd></dl>
-
-</div>
-</div>
-<a id="a4e5a8aaf7ad89030127eac8463199dc4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4e5a8aaf7ad89030127eac8463199dc4">&#9670;&nbsp;</a></span>diagnostic_dot_parse_s_rogowski()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>) function, pointer diagnostic_dot::diagnostic_dot_parse_s_rogowski </td>
-          <td>(</td>
-          <td class="paramtype">integer&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=<a class="el" href="namespacediagnostic__dot.html#ad8071bcb818b93b68608e8275d0a3017">diagnostic_dot_line_len</a>), intent(out)&#160;</td>
-          <td class="paramname"><em>line</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>line_number</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse coils defined by filaments connected in series. </p>
-<p>Parses a diagnostic rogowski defined as a collection of partial rogowskis connected in series.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>File handle of diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">line</td><td>On exit contains the current line of the file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">line_number</td><td>The current line number of the file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a> instance. </dd></dl>
-
-</div>
-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
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-  <div class="headertitle">
-<div class="title">ece Module Reference</div>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structece_1_1ece__class.html">ece_class</a>.  
-<a href="namespaceece.html#details">More...</a></p>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structece_1_1ece__class.html">ece_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing an ECE signal.  <a href="structece_1_1ece__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structece_1_1ece__context.html">ece_context</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure to hold all memory needed to be sent to the callback function.  <a href="structece_1_1ece__context.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1f9c7b0e824f9d96357f49ccda441543"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structece_1_1ece__class.html">ece_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a1f9c7b0e824f9d96357f49ccda441543">ece_construct</a> (start_path, end_path, resonance)</td></tr>
-<tr class="memdesc:a1f9c7b0e824f9d96357f49ccda441543"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object.  <a href="namespaceece.html#a1f9c7b0e824f9d96357f49ccda441543">More...</a><br /></td></tr>
-<tr class="separator:a1f9c7b0e824f9d96357f49ccda441543"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a90fdeae2d7692fff569ffa3a1262828b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a90fdeae2d7692fff569ffa3a1262828b">ece_destruct</a> (this)</td></tr>
-<tr class="memdesc:a90fdeae2d7692fff569ffa3a1262828b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object.  <a href="namespaceece.html#a90fdeae2d7692fff569ffa3a1262828b">More...</a><br /></td></tr>
-<tr class="separator:a90fdeae2d7692fff569ffa3a1262828b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a788642ab237a2cba51665e07304397c3"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a788642ab237a2cba51665e07304397c3">ece_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a788642ab237a2cba51665e07304397c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespaceece.html#a788642ab237a2cba51665e07304397c3">More...</a><br /></td></tr>
-<tr class="separator:a788642ab237a2cba51665e07304397c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38b9ee672de431f0248fa3332c44c551"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a38b9ee672de431f0248fa3332c44c551">ece_get_cart</a> (this, a_model, found)</td></tr>
-<tr class="memdesc:a38b9ee672de431f0248fa3332c44c551"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the signal measurement point.  <a href="namespaceece.html#a38b9ee672de431f0248fa3332c44c551">More...</a><br /></td></tr>
-<tr class="separator:a38b9ee672de431f0248fa3332c44c551"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2b02efa97eb2b1779e8e2239f806e808"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a2b02efa97eb2b1779e8e2239f806e808">ece_get_type</a> (this)</td></tr>
-<tr class="memdesc:a2b02efa97eb2b1779e8e2239f806e808"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the ece type.  <a href="namespaceece.html#a2b02efa97eb2b1779e8e2239f806e808">More...</a><br /></td></tr>
-<tr class="separator:a2b02efa97eb2b1779e8e2239f806e808"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d9a060e5c861aa99ce739fa50fb31dd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a3d9a060e5c861aa99ce739fa50fb31dd">ece_get_header</a> (this, header)</td></tr>
-<tr class="memdesc:a3d9a060e5c861aa99ce739fa50fb31dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespaceece.html#a3d9a060e5c861aa99ce739fa50fb31dd">More...</a><br /></td></tr>
-<tr class="separator:a3d9a060e5c861aa99ce739fa50fb31dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ada4067503770a25be3bd8073e8be4bc8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#ada4067503770a25be3bd8073e8be4bc8">ece_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:ada4067503770a25be3bd8073e8be4bc8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an ece signal and a position.  <a href="namespaceece.html#ada4067503770a25be3bd8073e8be4bc8">More...</a><br /></td></tr>
-<tr class="separator:ada4067503770a25be3bd8073e8be4bc8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d779683571c129302875d7409e1e23f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a5d779683571c129302875d7409e1e23f">ece_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:a5d779683571c129302875d7409e1e23f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a ece signal and a signal.  <a href="namespaceece.html#a5d779683571c129302875d7409e1e23f">More...</a><br /></td></tr>
-<tr class="separator:a5d779683571c129302875d7409e1e23f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e6437945e1e49e36e1b9587c1616124"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece.html#a0e6437945e1e49e36e1b9587c1616124">ece_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:a0e6437945e1e49e36e1b9587c1616124"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an ece signal and a cartesian position.  <a href="namespaceece.html#a0e6437945e1e49e36e1b9587c1616124">More...</a><br /></td></tr>
-<tr class="separator:a0e6437945e1e49e36e1b9587c1616124"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structece_1_1ece__class.html">ece_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a1f9c7b0e824f9d96357f49ccda441543"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1f9c7b0e824f9d96357f49ccda441543">&#9670;&nbsp;</a></span>ece_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>) function, pointer ece::ece_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>start_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>end_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>resonance</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">start_path</td><td>Starting point of an ece chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">end_path</td><td>Ending point of an ece chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">resonance</td><td>Geometric factor of the chord. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structece_1_1ece__class.html">ece_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a90fdeae2d7692fff569ffa3a1262828b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a90fdeae2d7692fff569ffa3a1262828b">&#9670;&nbsp;</a></span>ece_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine ece::ece_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structece_1_1ece__class.html">ece_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a38b9ee672de431f0248fa3332c44c551"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a38b9ee672de431f0248fa3332c44c551">&#9670;&nbsp;</a></span>ece_get_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) ece::ece_get_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>found</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the signal measurement point. </p>
-<p>Calculates the ECE measurement point by searching along the chord for the resonance. The search criteria is provided by the ece_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">found</td><td>Flag to indicate if the resonance was found. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Position in cartesian coordinates of the resonance. </dd></dl>
-
-</div>
-</div>
-<a id="ada4067503770a25be3bd8073e8be4bc8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ada4067503770a25be3bd8073e8be4bc8">&#9670;&nbsp;</a></span>ece_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function ece::ece_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an ece signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a5d779683571c129302875d7409e1e23f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d779683571c129302875d7409e1e23f">&#9670;&nbsp;</a></span>ece_get_gp_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function ece::ece_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a ece signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. Calls back to the <a class="el" href="namespacesignal.html">signal</a> module to call the other signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance for the second signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a0e6437945e1e49e36e1b9587c1616124"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0e6437945e1e49e36e1b9587c1616124">&#9670;&nbsp;</a></span>ece_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function ece::ece_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an ece signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te. This is the second signal so x_cart goes in the second position and this signal in the second.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a3d9a060e5c861aa99ce739fa50fb31dd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d9a060e5c861aa99ce739fa50fb31dd">&#9670;&nbsp;</a></span>ece_get_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine ece::ece_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>Returns a description of the array indices for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">header</td><td>Buffer arrays to write header strings to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the model and model sigma array indices. </dd></dl>
-
-</div>
-</div>
-<a id="a788642ab237a2cba51665e07304397c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a788642ab237a2cba51665e07304397c3">&#9670;&nbsp;</a></span>ece_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) ece::ece_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>Calculates the ECE signal by searching along the chord for the resonance. The search criteria is provided by the ece_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a2b02efa97eb2b1779e8e2239f806e808"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2b02efa97eb2b1779e8e2239f806e808">&#9670;&nbsp;</a></span>ece_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function ece::ece_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structece_1_1ece__class.html">ece_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the ece type. </p>
-<p>Returns a description of the ece type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structece_1_1ece__class.html">ece_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the ece type. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/namespaceece__dot.html b/html/namespaceece__dot.html
deleted file mode 100644
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--- a/html/namespaceece__dot.html
+++ /dev/null
@@ -1,253 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: ece_dot Module Reference</title>
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
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-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
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-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
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-
-</div><!-- top -->
-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">ece_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a 'ece.' file. The file format for these files are documented in <a class="el" href="ece_dot_sec.html">ECE Diagnostic Dot File</a>.  
-<a href="namespaceece__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ac59e5722238eb63eed49d487c5666238"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece__dot.html#ac59e5722238eb63eed49d487c5666238">ece_dot_read</a> (ece_file, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:ac59e5722238eb63eed49d487c5666238"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an ECE diagnostic dot file.  <a href="namespaceece__dot.html#ac59e5722238eb63eed49d487c5666238">More...</a><br /></td></tr>
-<tr class="separator:ac59e5722238eb63eed49d487c5666238"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af5760aa2dcda718fd29735761f9cbaf0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceece__dot.html#af5760aa2dcda718fd29735761f9cbaf0">ece_dot_parse_chord</a> (ece_dot_file_ref, coordinate_type, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:af5760aa2dcda718fd29735761f9cbaf0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse ECE diagnostic chord.  <a href="namespaceece__dot.html#af5760aa2dcda718fd29735761f9cbaf0">More...</a><br /></td></tr>
-<tr class="separator:af5760aa2dcda718fd29735761f9cbaf0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a 'ece.' file. The file format for these files are documented in <a class="el" href="ece_dot_sec.html">ECE Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="af5760aa2dcda718fd29735761f9cbaf0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af5760aa2dcda718fd29735761f9cbaf0">&#9670;&nbsp;</a></span>ece_dot_parse_chord()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine ece_dot::ece_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>ece_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse ECE diagnostic chord. </p>
-<p>Parses a single chord. Chords are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Resonance as a single real.</li>
-<li>Starting point as three reals.</li>
-<li>Ending point as three reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ece_dot_file_ref</td><td>Reference to the ece. file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac59e5722238eb63eed49d487c5666238"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac59e5722238eb63eed49d487c5666238">&#9670;&nbsp;</a></span>ece_dot_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine ece_dot::ece_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>ece_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an ECE diagnostic dot file. </p>
-<p>Parses the structure of a dignostic dot file and constructs a <a class="el" href="namespaceece.html">ece</a> object. Each chord is parsed by <a class="el" href="namespaceece__dot.html#af5760aa2dcda718fd29735761f9cbaf0">ece_dot_parse_chord</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ece_file</td><td>Name of the ece. file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000001">Todo:</a></b></dt><dd>FIXME: Remove the _new when removing the old code. </dd></dl>
-
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diff --git a/html/namespaceemission.html b/html/namespaceemission.html
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">emission Module Reference</div>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structemission_1_1emission__class.html">emission_class</a>. This contains the X-Ray emission as function of temperature and energy. This needs to still be multiplied by ne^2.  
-<a href="namespaceemission.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structemission_1_1emission__class.html">emission_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing the soft x-ray emission function.  <a href="structemission_1_1emission__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceemission_1_1emission__construct.html">emission_construct</a></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:af91115875d353acc004f2005fa23e18e"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structemission_1_1emission__class.html">emission_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceemission.html#af91115875d353acc004f2005fa23e18e">emission_construct_netcdf</a> (filename)</td></tr>
-<tr class="memdesc:af91115875d353acc004f2005fa23e18e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object.  <a href="namespaceemission.html#af91115875d353acc004f2005fa23e18e">More...</a><br /></td></tr>
-<tr class="separator:af91115875d353acc004f2005fa23e18e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae6c9bf4b2afee77d7a3d9eb7eb569571"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceemission.html#ae6c9bf4b2afee77d7a3d9eb7eb569571">emission_destruct</a> (this)</td></tr>
-<tr class="memdesc:ae6c9bf4b2afee77d7a3d9eb7eb569571"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object.  <a href="namespaceemission.html#ae6c9bf4b2afee77d7a3d9eb7eb569571">More...</a><br /></td></tr>
-<tr class="separator:ae6c9bf4b2afee77d7a3d9eb7eb569571"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0104e141d14e10eac280565cf5f788f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceemission.html#ac0104e141d14e10eac280565cf5f788f">emission_get_emission</a> (this, te, ne, index)</td></tr>
-<tr class="memdesc:ac0104e141d14e10eac280565cf5f788f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the emission as a function of energy for a fixed temperature.  <a href="namespaceemission.html#ac0104e141d14e10eac280565cf5f788f">More...</a><br /></td></tr>
-<tr class="separator:ac0104e141d14e10eac280565cf5f788f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structemission_1_1emission__class.html">emission_class</a>. This contains the X-Ray emission as function of temperature and energy. This needs to still be multiplied by ne^2. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="af91115875d353acc004f2005fa23e18e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af91115875d353acc004f2005fa23e18e">&#9670;&nbsp;</a></span>emission_construct_netcdf()</h2>
-
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-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">type (<a class="el" href="structemission_1_1emission__class.html">emission_class</a>) function, pointer emission::emission_construct_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>filename</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object. </p>
-<p>Allocates memory and initialized a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object from a netcdf file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">filename</td><td>File path to the emissivity netcdf file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ae6c9bf4b2afee77d7a3d9eb7eb569571"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae6c9bf4b2afee77d7a3d9eb7eb569571">&#9670;&nbsp;</a></span>emission_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">subroutine emission::emission_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structemission_1_1emission__class.html">emission_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structemission_1_1emission__class.html">emission_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structemission_1_1emission__class.html">emission_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac0104e141d14e10eac280565cf5f788f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0104e141d14e10eac280565cf5f788f">&#9670;&nbsp;</a></span>emission_get_emission()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function emission::emission_get_emission </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structemission_1_1emission__class.html">emission_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>te</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>ne</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the emission as a function of energy for a fixed temperature. </p>
-<p>The emission for a fixed temperature is interpolated from a the temperature grid points. The emission array columns are the temperature and rows are the energy. Transmission and absorption function convert to the signal</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structemission_1_1emission__class.html">emission_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te</td><td>The electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne</td><td>The electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Filter index of the camera array. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The emissivity function for a fixed temperature. </dd></dl>
-
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-
-<p>Defines the base class of the type <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. Equilibrium is an abstract interface to the equilibrium solver. Every method is meant to be overwritten by a subclass method with a few exceptions. For instance a vacuum equilibrium could use the default return values for equilibrium_get_ne, equilibrium_get_te and equilibrium_get_sxrem methods.  
-<a href="namespaceequilibrium.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a equilibrium.  <a href="structequilibrium_1_1equilibrium__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceequilibrium_1_1equilibrium__construct.html">equilibrium_construct</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for the construction of <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> types using equilibrium_construct_vmec, equilibrium_construct_vacuum or equilibrium_construct_siesta.  <a href="interfaceequilibrium_1_1equilibrium__construct.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a71a4692b96c812902e37409d40c48461"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a71a4692b96c812902e37409d40c48461">equilibrium_construct</a> (force_solve)</td></tr>
-<tr class="memdesc:a71a4692b96c812902e37409d40c48461"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>.  <a href="namespaceequilibrium.html#a71a4692b96c812902e37409d40c48461">More...</a><br /></td></tr>
-<tr class="separator:a71a4692b96c812902e37409d40c48461"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a341ac92d65e33cca9831c71c521b5791"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a341ac92d65e33cca9831c71c521b5791">equilibrium_construct_sub</a> (this, force_solve)</td></tr>
-<tr class="memdesc:a341ac92d65e33cca9831c71c521b5791"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>.  <a href="namespaceequilibrium.html#a341ac92d65e33cca9831c71c521b5791">More...</a><br /></td></tr>
-<tr class="separator:a341ac92d65e33cca9831c71c521b5791"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7f1ca9df542f741d351f60074e38fdd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa7f1ca9df542f741d351f60074e38fdd">equilibrium_destruct</a> (this)</td></tr>
-<tr class="memdesc:aa7f1ca9df542f741d351f60074e38fdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object.  <a href="namespaceequilibrium.html#aa7f1ca9df542f741d351f60074e38fdd">More...</a><br /></td></tr>
-<tr class="separator:aa7f1ca9df542f741d351f60074e38fdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae25254f1165258631e26d4a34b34c206"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae25254f1165258631e26d4a34b34c206"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">More...</a><br /></td></tr>
-<tr class="separator:ae25254f1165258631e26d4a34b34c206"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa87a9dd2aa8a5b0efa749d566b57510b">equilibrium_set_magnetic_cache_response</a> (this, response_object, state_flags)</td></tr>
-<tr class="memdesc:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the magnetic cache of the equilibrium for the magnetic response.  <a href="namespaceequilibrium.html#aa87a9dd2aa8a5b0efa749d566b57510b">More...</a><br /></td></tr>
-<tr class="separator:aa87a9dd2aa8a5b0efa749d566b57510b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a071ab01f0bd3d33683db0e9f642e3d8a">equilibrium_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the magnetic cache of the equilibrium for points.  <a href="namespaceequilibrium.html#a071ab01f0bd3d33683db0e9f642e3d8a">More...</a><br /></td></tr>
-<tr class="separator:a071ab01f0bd3d33683db0e9f642e3d8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="memItemLeft" align="right" valign="top">recursive character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a817f1fd0217a2fe0774efcfebbbbc72c">equilibrium_get_type</a> (this)</td></tr>
-<tr class="memdesc:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespaceequilibrium.html#a817f1fd0217a2fe0774efcfebbbbc72c">More...</a><br /></td></tr>
-<tr class="separator:a817f1fd0217a2fe0774efcfebbbbc72c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">More...</a><br /></td></tr>
-<tr class="separator:a1ba4b1fcc75d9c108010f5d4d2ac841f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53677debed221aa3ab4a836e965e9a41"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:a53677debed221aa3ab4a836e965e9a41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the name of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">More...</a><br /></td></tr>
-<tr class="separator:a53677debed221aa3ab4a836e965e9a41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9f245806e056deef11873271976af9eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a9f245806e056deef11873271976af9eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the value of a reconstruction equilibrium parameter.  <a href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">More...</a><br /></td></tr>
-<tr class="separator:a9f245806e056deef11873271976af9eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">equilibrium_get_gp_ne_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">More...</a><br /></td></tr>
-<tr class="separator:a6b1e3e48ed232d3d681aa0bcd1077257"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">equilibrium_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density profile af array.  <a href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">More...</a><br /></td></tr>
-<tr class="separator:a9122ee41d8ac4a6c3358ce3d10dca3b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad53a67218ebb9f98232331c17e81054b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">equilibrium_get_gp_ne_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:ad53a67218ebb9f98232331c17e81054b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">More...</a><br /></td></tr>
-<tr class="separator:ad53a67218ebb9f98232331c17e81054b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1f8b1beb3be65794fe26c15da0e44e20"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">equilibrium_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a1f8b1beb3be65794fe26c15da0e44e20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">More...</a><br /></td></tr>
-<tr class="separator:a1f8b1beb3be65794fe26c15da0e44e20"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e0710d9648460584c1371ce2cac1e08"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">equilibrium_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a1e0710d9648460584c1371ce2cac1e08"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">More...</a><br /></td></tr>
-<tr class="separator:a1e0710d9648460584c1371ce2cac1e08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a60b8c388b37c1b3d70e7b04e4bad489e">equilibrium_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespaceequilibrium.html#a60b8c388b37c1b3d70e7b04e4bad489e">More...</a><br /></td></tr>
-<tr class="separator:a60b8c388b37c1b3d70e7b04e4bad489e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3822a738d14872a1c63368f209493b1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af3822a738d14872a1c63368f209493b1">equilibrium_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:af3822a738d14872a1c63368f209493b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a radial position.  <a href="namespaceequilibrium.html#af3822a738d14872a1c63368f209493b1">More...</a><br /></td></tr>
-<tr class="separator:af3822a738d14872a1c63368f209493b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e5934e7ce31abb107f397cc2a3c8895"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">equilibrium_get_gp_te_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a2e5934e7ce31abb107f397cc2a3c8895"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">More...</a><br /></td></tr>
-<tr class="separator:a2e5934e7ce31abb107f397cc2a3c8895"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">equilibrium_get_te_af</a> (this)</td></tr>
-<tr class="memdesc:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature profile af array.  <a href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">More...</a><br /></td></tr>
-<tr class="separator:a3d3fcf615ad1a19de07e4306cde0ac23"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a236332f09fc1597b62674fcb1d5392a1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">equilibrium_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a236332f09fc1597b62674fcb1d5392a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">More...</a><br /></td></tr>
-<tr class="separator:a236332f09fc1597b62674fcb1d5392a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">More...</a><br /></td></tr>
-<tr class="separator:a15c35ecf90c3ec13d7561d2a6fd032b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa33954648a43a182ee9c771679755d9a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">equilibrium_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:aa33954648a43a182ee9c771679755d9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">More...</a><br /></td></tr>
-<tr class="separator:aa33954648a43a182ee9c771679755d9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa991dfc32d3ade420caa527fc14acf5"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#afa991dfc32d3ade420caa527fc14acf5">equilibrium_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:afa991dfc32d3ade420caa527fc14acf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespaceequilibrium.html#afa991dfc32d3ade420caa527fc14acf5">More...</a><br /></td></tr>
-<tr class="separator:afa991dfc32d3ade420caa527fc14acf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3428a3b6b5837e711921ebe3fceaf412"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3428a3b6b5837e711921ebe3fceaf412">equilibrium_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a3428a3b6b5837e711921ebe3fceaf412"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a radial position.  <a href="namespaceequilibrium.html#a3428a3b6b5837e711921ebe3fceaf412">More...</a><br /></td></tr>
-<tr class="separator:a3428a3b6b5837e711921ebe3fceaf412"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0532f8e915d83525f326d9b7c581a35e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">equilibrium_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a0532f8e915d83525f326d9b7c581a35e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">More...</a><br /></td></tr>
-<tr class="separator:a0532f8e915d83525f326d9b7c581a35e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a407d4263b4a24d72f683f7beecff4620"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">equilibrium_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:a407d4263b4a24d72f683f7beecff4620"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature profile af array.  <a href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">More...</a><br /></td></tr>
-<tr class="separator:a407d4263b4a24d72f683f7beecff4620"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">equilibrium_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">More...</a><br /></td></tr>
-<tr class="separator:af3b16cbdb5a8dafd463333c0ada0a4f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebf430af623ee696d366dcfb93022e7c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aebf430af623ee696d366dcfb93022e7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">More...</a><br /></td></tr>
-<tr class="separator:aebf430af623ee696d366dcfb93022e7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acdd822f6042f77c085ed93034101f7da"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">equilibrium_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:acdd822f6042f77c085ed93034101f7da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">More...</a><br /></td></tr>
-<tr class="separator:acdd822f6042f77c085ed93034101f7da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d4c6548457108373fe2e9daee2f1f14"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1d4c6548457108373fe2e9daee2f1f14">equilibrium_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a1d4c6548457108373fe2e9daee2f1f14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespaceequilibrium.html#a1d4c6548457108373fe2e9daee2f1f14">More...</a><br /></td></tr>
-<tr class="separator:a1d4c6548457108373fe2e9daee2f1f14"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acb7c48ff5b0f7db28ffb917ca51beb4f">equilibrium_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a radial position.  <a href="namespaceequilibrium.html#acb7c48ff5b0f7db28ffb917ca51beb4f">More...</a><br /></td></tr>
-<tr class="separator:acb7c48ff5b0f7db28ffb917ca51beb4f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4d9c458221a534f7d60a8ce37fe8176e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">equilibrium_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:a4d9c458221a534f7d60a8ce37fe8176e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emissivity gp kernel hyper parameters.  <a href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">More...</a><br /></td></tr>
-<tr class="separator:a4d9c458221a534f7d60a8ce37fe8176e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">equilibrium_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity profile af array.  <a href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">More...</a><br /></td></tr>
-<tr class="separator:a6e162c86fa7e87cd3a96f79bfb3e7c3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1148888b36cd9805341b7b6b7d8551db"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">equilibrium_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:a1148888b36cd9805341b7b6b7d8551db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">More...</a><br /></td></tr>
-<tr class="separator:a1148888b36cd9805341b7b6b7d8551db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2033d74bc0923a953475cb1a522de1c6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:a2033d74bc0923a953475cb1a522de1c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">More...</a><br /></td></tr>
-<tr class="separator:a2033d74bc0923a953475cb1a522de1c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a797743172f6b65ed4bdded8b6dce420c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:a797743172f6b65ed4bdded8b6dce420c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">More...</a><br /></td></tr>
-<tr class="separator:a797743172f6b65ed4bdded8b6dce420c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f0300c0005dac19977a8e5577cdb3d4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4f0300c0005dac19977a8e5577cdb3d4">equilibrium_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:a4f0300c0005dac19977a8e5577cdb3d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespaceequilibrium.html#a4f0300c0005dac19977a8e5577cdb3d4">More...</a><br /></td></tr>
-<tr class="separator:a4f0300c0005dac19977a8e5577cdb3d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab11a58272050c4781b094ac7dd37fa57"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab11a58272050c4781b094ac7dd37fa57">equilibrium_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:ab11a58272050c4781b094ac7dd37fa57"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a radial position.  <a href="namespaceequilibrium.html#ab11a58272050c4781b094ac7dd37fa57">More...</a><br /></td></tr>
-<tr class="separator:ab11a58272050c4781b094ac7dd37fa57"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a63ef3e466a352bb9b1e36673f07daf"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a7a63ef3e466a352bb9b1e36673f07daf">equilibrium_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:a7a63ef3e466a352bb9b1e36673f07daf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespaceequilibrium.html#a7a63ef3e466a352bb9b1e36673f07daf">More...</a><br /></td></tr>
-<tr class="separator:a7a63ef3e466a352bb9b1e36673f07daf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a919f2f345ba01dc5c557c50f69c17227"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a919f2f345ba01dc5c557c50f69c17227">equilibrium_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a919f2f345ba01dc5c557c50f69c17227"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a radial position.  <a href="namespaceequilibrium.html#a919f2f345ba01dc5c557c50f69c17227">More...</a><br /></td></tr>
-<tr class="separator:a919f2f345ba01dc5c557c50f69c17227"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a07761f9e562032066052a4cdf608edcb"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a07761f9e562032066052a4cdf608edcb">equilibrium_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a07761f9e562032066052a4cdf608edcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespaceequilibrium.html#a07761f9e562032066052a4cdf608edcb">More...</a><br /></td></tr>
-<tr class="separator:a07761f9e562032066052a4cdf608edcb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c72df061afb532ff36b388f652f08c9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a1c72df061afb532ff36b388f652f08c9">equilibrium_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a1c72df061afb532ff36b388f652f08c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespaceequilibrium.html#a1c72df061afb532ff36b388f652f08c9">More...</a><br /></td></tr>
-<tr class="separator:a1c72df061afb532ff36b388f652f08c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6761083f9efa93db8f53826785bce684"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a6761083f9efa93db8f53826785bce684"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">More...</a><br /></td></tr>
-<tr class="separator:a6761083f9efa93db8f53826785bce684"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adbb086288f87bedec9abed1d02888dfc"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">equilibrium_get_magnetic_volume_rgrid</a> (this)</td></tr>
-<tr class="memdesc:adbb086288f87bedec9abed1d02888dfc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration radial grid points.  <a href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">More...</a><br /></td></tr>
-<tr class="separator:adbb086288f87bedec9abed1d02888dfc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a58181cf1609d1dafa8e377746b4aafe3"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">equilibrium_get_magnetic_volume_zgrid</a> (this)</td></tr>
-<tr class="memdesc:a58181cf1609d1dafa8e377746b4aafe3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration z grid points.  <a href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">More...</a><br /></td></tr>
-<tr class="separator:a58181cf1609d1dafa8e377746b4aafe3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4beab3efa39f5999f28f554b089a32d6"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">equilibrium_get_magnetic_volume_jrgrid</a> (this)</td></tr>
-<tr class="memdesc:a4beab3efa39f5999f28f554b089a32d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jr grid points.  <a href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">More...</a><br /></td></tr>
-<tr class="separator:a4beab3efa39f5999f28f554b089a32d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab796210f7567a4b026b031859fa1e6ee"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">equilibrium_get_magnetic_volume_jphigrid</a> (this)</td></tr>
-<tr class="memdesc:ab796210f7567a4b026b031859fa1e6ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jphi grid points.  <a href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">More...</a><br /></td></tr>
-<tr class="separator:ab796210f7567a4b026b031859fa1e6ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae1aae7df78c798deb4408bc38acd2b62"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">equilibrium_get_magnetic_volume_jzgrid</a> (this)</td></tr>
-<tr class="memdesc:ae1aae7df78c798deb4408bc38acd2b62"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jz grid points.  <a href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">More...</a><br /></td></tr>
-<tr class="separator:ae1aae7df78c798deb4408bc38acd2b62"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">equilibrium_get_volume_int_element</a> (this)</td></tr>
-<tr class="memdesc:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume integration element.  <a href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">More...</a><br /></td></tr>
-<tr class="separator:ac2027b4e4ea0c3c21baba1b57f5a2ddc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5995f889d642a7b1e2cde874f9c3670"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">equilibrium_get_con_surface_krgrid</a> (this)</td></tr>
-<tr class="memdesc:ad5995f889d642a7b1e2cde874f9c3670"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kr grid points.  <a href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">More...</a><br /></td></tr>
-<tr class="separator:ad5995f889d642a7b1e2cde874f9c3670"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0ddc62a0a73b6923d40e25235dcd608"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">equilibrium_get_con_surface_kphigrid</a> (this)</td></tr>
-<tr class="memdesc:ae0ddc62a0a73b6923d40e25235dcd608"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kphi grid points.  <a href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">More...</a><br /></td></tr>
-<tr class="separator:ae0ddc62a0a73b6923d40e25235dcd608"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05f9de6ea21b9862f05c7497b16ebc93"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">equilibrium_get_con_surface_kzgrid</a> (this)</td></tr>
-<tr class="memdesc:a05f9de6ea21b9862f05c7497b16ebc93"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kz grid points.  <a href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">More...</a><br /></td></tr>
-<tr class="separator:a05f9de6ea21b9862f05c7497b16ebc93"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae57f6af254fdd6577cc47cb3e28b285e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae57f6af254fdd6577cc47cb3e28b285e">equilibrium_get_area_int_element</a> (this)</td></tr>
-<tr class="memdesc:ae57f6af254fdd6577cc47cb3e28b285e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get area integration element.  <a href="namespaceequilibrium.html#ae57f6af254fdd6577cc47cb3e28b285e">More...</a><br /></td></tr>
-<tr class="separator:ae57f6af254fdd6577cc47cb3e28b285e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa19f91d7d7db0a845b59f5106dbe3778"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">equilibrium_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
-<tr class="memdesc:aa19f91d7d7db0a845b59f5106dbe3778"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external current.  <a href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">More...</a><br /></td></tr>
-<tr class="separator:aa19f91d7d7db0a845b59f5106dbe3778"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5e34a9e88e40299503f1f4de95ff413"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">equilibrium_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:ac5e34a9e88e40299503f1f4de95ff413"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">More...</a><br /></td></tr>
-<tr class="separator:ac5e34a9e88e40299503f1f4de95ff413"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">More...</a><br /></td></tr>
-<tr class="separator:a5e269ab9a6543c2c2dd4900ae96c19b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a382a991c74aed8d63e537d6b49b66918"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">equilibrium_get_grid_start</a> (this)</td></tr>
-<tr class="memdesc:a382a991c74aed8d63e537d6b49b66918"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get start of the radial grid.  <a href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">More...</a><br /></td></tr>
-<tr class="separator:a382a991c74aed8d63e537d6b49b66918"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59825e329aec07515b5ebedf413a2ff4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a59825e329aec07515b5ebedf413a2ff4">equilibrium_get_grid_stop</a> (this)</td></tr>
-<tr class="memdesc:a59825e329aec07515b5ebedf413a2ff4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get stop of the radial grid.  <a href="namespaceequilibrium.html#a59825e329aec07515b5ebedf413a2ff4">More...</a><br /></td></tr>
-<tr class="separator:a59825e329aec07515b5ebedf413a2ff4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">equilibrium_is_scaler_value</a> (this, id)</td></tr>
-<tr class="memdesc:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a scaler value.  <a href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">More...</a><br /></td></tr>
-<tr class="separator:a99a35f56d6a8d501f52c0b4ac8447a03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">equilibrium_is_2d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 2d array.  <a href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">More...</a><br /></td></tr>
-<tr class="separator:a3d5e4a4eb04a0a8d93c090ebfdd8ce89"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab34978d83d0ca311e835f259912979e0"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:ab34978d83d0ca311e835f259912979e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">More...</a><br /></td></tr>
-<tr class="separator:ab34978d83d0ca311e835f259912979e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7549affbf460dbc78e762e99b6ce58de"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">equilibrium_is_using_point</a> (this)</td></tr>
-<tr class="memdesc:a7549affbf460dbc78e762e99b6ce58de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a the point magnetics are being used.  <a href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">More...</a><br /></td></tr>
-<tr class="separator:a7549affbf460dbc78e762e99b6ce58de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae303206d825ca2ea689dcda3fa889a80"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">equilibrium_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae303206d825ca2ea689dcda3fa889a80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the equilibrium.  <a href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">More...</a><br /></td></tr>
-<tr class="separator:ae303206d825ca2ea689dcda3fa889a80"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af19a9f34a7786fd3cb34acf466c50d5f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#af19a9f34a7786fd3cb34acf466c50d5f">equilibrium_read_vac_file</a> (this, index, eq_comm)</td></tr>
-<tr class="memdesc:af19a9f34a7786fd3cb34acf466c50d5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the vacuum magnetic field file.  <a href="namespaceequilibrium.html#af19a9f34a7786fd3cb34acf466c50d5f">More...</a><br /></td></tr>
-<tr class="separator:af19a9f34a7786fd3cb34acf466c50d5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53216bd25b330737a77a7638a9e43303"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a53216bd25b330737a77a7638a9e43303">equilibrium_save_state</a> (this)</td></tr>
-<tr class="memdesc:a53216bd25b330737a77a7638a9e43303"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespaceequilibrium.html#a53216bd25b330737a77a7638a9e43303">More...</a><br /></td></tr>
-<tr class="separator:a53216bd25b330737a77a7638a9e43303"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a032df1c41a8aa23eb9b8d7434118a472"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a032df1c41a8aa23eb9b8d7434118a472">equilibrium_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a032df1c41a8aa23eb9b8d7434118a472"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespaceequilibrium.html#a032df1c41a8aa23eb9b8d7434118a472">More...</a><br /></td></tr>
-<tr class="separator:a032df1c41a8aa23eb9b8d7434118a472"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">More...</a><br /></td></tr>
-<tr class="separator:a52fe0a7f6fe457ba1e1397c04bea5d41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84e1df0703c7493f444fa5dc0a392d34"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a84e1df0703c7493f444fa5dc0a392d34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">More...</a><br /></td></tr>
-<tr class="separator:a84e1df0703c7493f444fa5dc0a392d34"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab1a77f62a029a487c5bb29b041e63482"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#ab1a77f62a029a487c5bb29b041e63482">equilibrium_def_result</a> (this, result_ncid, maxnsetps_dim_id)</td></tr>
-<tr class="memdesc:ab1a77f62a029a487c5bb29b041e63482"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespaceequilibrium.html#ab1a77f62a029a487c5bb29b041e63482">More...</a><br /></td></tr>
-<tr class="separator:ab1a77f62a029a487c5bb29b041e63482"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd20e3a5ae2c924b620d654c076dc81e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">equilibrium_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:acd20e3a5ae2c924b620d654c076dc81e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">More...</a><br /></td></tr>
-<tr class="separator:acd20e3a5ae2c924b620d654c076dc81e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a502ea3221e3de780f53e85f8832eca33"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">equilibrium_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a502ea3221e3de780f53e85f8832eca33"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">More...</a><br /></td></tr>
-<tr class="separator:a502ea3221e3de780f53e85f8832eca33"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d4f0e13ecadfc197de9c0c4efa47033"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a5d4f0e13ecadfc197de9c0c4efa47033">equilibrium_restart</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a5d4f0e13ecadfc197de9c0c4efa47033"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart equilibrium.  <a href="namespaceequilibrium.html#a5d4f0e13ecadfc197de9c0c4efa47033">More...</a><br /></td></tr>
-<tr class="separator:a5d4f0e13ecadfc197de9c0c4efa47033"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a90f3a500648b3d3540493782df9f29c7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a90f3a500648b3d3540493782df9f29c7">equilibrium_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a90f3a500648b3d3540493782df9f29c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the equilibrium state to children.  <a href="namespaceequilibrium.html#a90f3a500648b3d3540493782df9f29c7">More...</a><br /></td></tr>
-<tr class="separator:a90f3a500648b3d3540493782df9f29c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2703de0db0bd4621825db0849e8c4521"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceequilibrium.html#a2703de0db0bd4621825db0849e8c4521">equilibrium_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a2703de0db0bd4621825db0849e8c4521"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child equilibrium state to the parent.  <a href="namespaceequilibrium.html#a2703de0db0bd4621825db0849e8c4521">More...</a><br /></td></tr>
-<tr class="separator:a2703de0db0bd4621825db0849e8c4521"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. Equilibrium is an abstract interface to the equilibrium solver. Every method is meant to be overwritten by a subclass method with a few exceptions. For instance a vacuum equilibrium could use the default return values for equilibrium_get_ne, equilibrium_get_te and equilibrium_get_sxrem methods. </p>
-<dl class="section user"><dt>Sub Classes:</dt><dd><a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a> </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a71a4692b96c812902e37409d40c48461"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a71a4692b96c812902e37409d40c48461">&#9670;&nbsp;</a></span>equilibrium_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>) function, pointer <a class="el" href="interfaceequilibrium_1_1equilibrium__construct.html">equilibrium::equilibrium_construct</a> </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. </p>
-<p>Allocates memory for a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_object</td><td>An instance of a <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> subclass. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a341ac92d65e33cca9831c71c521b5791"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a341ac92d65e33cca9831c71c521b5791">&#9670;&nbsp;</a></span>equilibrium_construct_sub()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_construct_sub </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. </p>
-<p>Initializes a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_object</td><td>An instance of a <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> subclass. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ae303206d825ca2ea689dcda3fa889a80"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae303206d825ca2ea689dcda3fa889a80">&#9670;&nbsp;</a></span>equilibrium_converge()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function equilibrium::equilibrium_converge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>num_iter</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the equilibrium. </p>
-<p>This method is virtual. The actual solving of the equilibrium should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237" title="Solves the VMEC equilibrium.">vmec_equilibrium::vmec_converge</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#aa002c0e73f884fb2a1a3a2e11854b4c2" title="Solves the siesta equilibrium.">siesta_equilibrium::siesta_converge</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">num_iter</td><td>Counter to track the number of iterations. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the file to write logs to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for the equilibrium. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the convergece was sucessful and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="ab1a77f62a029a487c5bb29b041e63482"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab1a77f62a029a487c5bb29b041e63482">&#9670;&nbsp;</a></span>equilibrium_def_result()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_def_result </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>maxnsetps_dim_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Define NetCDF variables for the result file. </p>
-<p>This method is virtual. The actual defining of the equilibrium variables should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37" title="Define NetCDF variables for the result file.">vmec_equilibrium::vmec_def_result</a> </dd>
-<dd>
-siesta_equilibrium::siesta_def_result</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">maxnsetps_dim_id</td><td>NetCDF dimension id of the number of steps dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa7f1ca9df542f741d351f60074e38fdd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa7f1ca9df542f741d351f60074e38fdd">&#9670;&nbsp;</a></span>equilibrium_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae57f6af254fdd6577cc47cb3e28b285e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae57f6af254fdd6577cc47cb3e28b285e">&#9670;&nbsp;</a></span>equilibrium_get_area_int_element()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_area_int_element </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get area integration element. </p>
-<p>This method is virtual. The actual getting of the area integration element should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f" title="Get area integration element.">vmec_equilibrium::vmec_get_area_int_element</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_area_int_element</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The volume integration element. </dd></dl>
-
-</div>
-</div>
-<a id="a07761f9e562032066052a4cdf608edcb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a07761f9e562032066052a4cdf608edcb">&#9670;&nbsp;</a></span>equilibrium_get_b_vec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) equilibrium::equilibrium_get_b_vec </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the magnetic field vector at a position. </p>
-<p>This method is virtual. The actual getting of the magnetic field vector should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_B_vec </dd>
-<dd>
-vacuum_equilibrium::vacuum_get_B_vec </dd>
-<dd>
-siesta_equilibrium::siesta_get_B_vec</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the magnetic field vector at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cyl</td><td>Flag that specifies if the bfield should be returned in cartesian or cylindical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The magnetic field vector at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ae0ddc62a0a73b6923d40e25235dcd608"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae0ddc62a0a73b6923d40e25235dcd608">&#9670;&nbsp;</a></span>equilibrium_get_con_surface_kphigrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer equilibrium::equilibrium_get_con_surface_kphigrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kphi grid points. </p>
-<p>This method is virtual. The actual getting of the kphi grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82" title="Get the conducting surface integration kphi grid points.">vmec_equilibrium::vmec_get_con_surface_kphigrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_con_surface_kphigrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The kphi grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ad5995f889d642a7b1e2cde874f9c3670"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad5995f889d642a7b1e2cde874f9c3670">&#9670;&nbsp;</a></span>equilibrium_get_con_surface_krgrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer equilibrium::equilibrium_get_con_surface_krgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kr grid points. </p>
-<p>This method is virtual. The actual getting of the kr grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a" title="Get the conducting surface integration kr grid points.">vmec_equilibrium::vmec_get_con_surface_krgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_con_surface_krgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The kr grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a05f9de6ea21b9862f05c7497b16ebc93"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05f9de6ea21b9862f05c7497b16ebc93">&#9670;&nbsp;</a></span>equilibrium_get_con_surface_kzgrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer equilibrium::equilibrium_get_con_surface_kzgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kz grid points. </p>
-<p>This method is virtual. The actual getting of the kz grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec" title="Get the conducting surface integration kz grid points.">vmec_equilibrium::vmec_get_con_surface_kzgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_con_surface_kzgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The kz grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ac5e34a9e88e40299503f1f4de95ff413"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac5e34a9e88e40299503f1f4de95ff413">&#9670;&nbsp;</a></span>equilibrium_get_ext_b_plasma()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) equilibrium::equilibrium_get_ext_b_plasma </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>position</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>axi_only</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external plasma magnetic field. </p>
-<p>This method is virtual. The actual getting of the external current should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4" title="Get external plasma magnetic field.">vmec_equilibrium::vmec_get_ext_b_plasma</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49" title="Get external plasma magnetic field.">siesta_equilibrium::siesta_get_ext_b_plasma</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Position to compute the fields at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">axi_only</td><td>Gives only the axisymmtric component of the magnetic field. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external currents. </dd></dl>
-
-</div>
-</div>
-<a id="aa19f91d7d7db0a845b59f5106dbe3778"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa19f91d7d7db0a845b59f5106dbe3778">&#9670;&nbsp;</a></span>equilibrium_get_ext_currents()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer equilibrium::equilibrium_get_ext_currents </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_currents</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>scale_currents</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external current. </p>
-<p>This method is virtual. The actual getting of the external current should be handled by a subclass method. To void extra memory operations, arrays are returned as pointers. The memory management is handled by the equilibrium subclass instance. If the equilibrium has no external currents return a null() pointer or don't override this method. MAKEGRID has a mode where currents maybe scaled. Inform the signal using this to scale the currents if need be. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e" title="Get external current.">vmec_equilibrium::vmec_get_ext_currents</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#a821a3f5f8b5f126a6453dfa1964d553a" title="Get external current.">vacuum_equilibrium::vacuum_get_ext_currents</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_ext_currents</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_currents</td><td>Forces the number of currents to return if greater than zero. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">scale_currents</td><td>Informs the caller that currents need to be scaled. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external currents. </dd></dl>
-
-</div>
-</div>
-<a id="ad53a67218ebb9f98232331c17e81054b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad53a67218ebb9f98232331c17e81054b">&#9670;&nbsp;</a></span>equilibrium_get_gp_ne_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ne_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the two indicies. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02" title="Get the electron density gp kernel value for the two indicies.">vmec_equilibrium::vmec_get_gp_ne_ij</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_ne_ij</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a6b1e3e48ed232d3d681aa0bcd1077257"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6b1e3e48ed232d3d681aa0bcd1077257">&#9670;&nbsp;</a></span>equilibrium_get_gp_ne_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_gp_ne_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron density gp kernel hyper parameters. </p>
-<p>This method is virtual. The actual getting of the number of hyper parameters should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557" title="Get the number of electron density gp kernel hyper parameters.">vmec_equilibrium::vmec_get_gp_ne_num_hyper_param</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_ne_num_hyper_param</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a1f8b1beb3be65794fe26c15da0e44e20"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1f8b1beb3be65794fe26c15da0e44e20">&#9670;&nbsp;</a></span>equilibrium_get_gp_ne_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ne_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and index. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c" title="Get the electron density gp kernel value for the position and index.">vmec_equilibrium::vmec_get_gp_ne_pi</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8" title="Get the electron density gp kernel value for the position and index.">siesta_equilibrium::siesta_get_gp_ne_pi</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a1e0710d9648460584c1371ce2cac1e08"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e0710d9648460584c1371ce2cac1e08">&#9670;&nbsp;</a></span>equilibrium_get_gp_ne_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ne_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and position. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4" title="Get the electron density gp kernel value for the position and position.">vmec_equilibrium::vmec_get_gp_ne_pp</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24" title="Get the electron density gp kernel value for the position and position.">siesta_equilibrium::siesta_get_gp_ne_pp</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a1148888b36cd9805341b7b6b7d8551db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1148888b36cd9805341b7b6b7d8551db">&#9670;&nbsp;</a></span>equilibrium_get_gp_sxrem_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_sxrem_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the two indicies. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02" title="Get the electron density gp kernel value for the two indicies.">vmec_equilibrium::vmec_get_gp_ne_ij</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_ne_ij</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a4d9c458221a534f7d60a8ce37fe8176e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4d9c458221a534f7d60a8ce37fe8176e">&#9670;&nbsp;</a></span>equilibrium_get_gp_sxrem_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_gp_sxrem_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of soft x-ray emissivity gp kernel hyper parameters. </p>
-<p>This method is virtual. The actual getting of the number of hyper parameters should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649" title="Get the number of soft x-ray emission gp kernel hyper parameters.">vmec_equilibrium::vmec_get_gp_sxrem_num_hyper_param</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_sxrem_num_hyper_param</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a2033d74bc0923a953475cb1a522de1c6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2033d74bc0923a953475cb1a522de1c6">&#9670;&nbsp;</a></span>equilibrium_get_gp_sxrem_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_sxrem_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and index. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565" title="Get the soft x-ray emissivity gp kernel value for the position and index.">vmec_equilibrium::vmec_get_gp_sxrem_pi</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef" title="Get the soft x-ray emissivity gp kernel value for the position and index.">siesta_equilibrium::siesta_get_gp_sxrem_pi</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a797743172f6b65ed4bdded8b6dce420c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a797743172f6b65ed4bdded8b6dce420c">&#9670;&nbsp;</a></span>equilibrium_get_gp_sxrem_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_sxrem_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and position. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1" title="Get the soft x-ray emissivity gp kernel value for the position and position.">vmec_equilibrium::vmec_get_gp_sxrem_pp</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6" title="Get the soft x-ray emissivity gp kernel value for the position and position.">siesta_equilibrium::siesta_get_gp_sxrem_pp</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Profile position index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a236332f09fc1597b62674fcb1d5392a1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a236332f09fc1597b62674fcb1d5392a1">&#9670;&nbsp;</a></span>equilibrium_get_gp_te_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_te_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the two indicies. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164" title="Get the electron temperature gp kernel value for the two indicies.">vmec_equilibrium::vmec_get_gp_te_ij</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_te_ij</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>ith profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a2e5934e7ce31abb107f397cc2a3c8895"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2e5934e7ce31abb107f397cc2a3c8895">&#9670;&nbsp;</a></span>equilibrium_get_gp_te_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_gp_te_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron temperature gp kernel hyper parameters. </p>
-<p>This method is virtual. The actual getting of the number of hyper parameters should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165" title="Get the number of electron temperature gp kernel hyper parameters.">vmec_equilibrium::vmec_get_gp_te_num_hyper_param</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_te_num_hyper_param</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a15c35ecf90c3ec13d7561d2a6fd032b9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a15c35ecf90c3ec13d7561d2a6fd032b9">&#9670;&nbsp;</a></span>equilibrium_get_gp_te_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_te_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and index. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8" title="Get the electron temperature gp kernel value for the position and index.">vmec_equilibrium::vmec_get_gp_te_pi</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a" title="Get the electron temperature gp kernel value for the position and index.">siesta_equilibrium::siesta_get_gp_te_pi</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="aa33954648a43a182ee9c771679755d9a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa33954648a43a182ee9c771679755d9a">&#9670;&nbsp;</a></span>equilibrium_get_gp_te_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_te_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and position. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db" title="Get the electron temperature gp kernel value for the position and position.">vmec_equilibrium::vmec_get_gp_te_pp</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4" title="Get the electron temperature gp kernel value for the position and position.">siesta_equilibrium::siesta_get_gp_te_pp</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="af3b16cbdb5a8dafd463333c0ada0a4f6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af3b16cbdb5a8dafd463333c0ada0a4f6">&#9670;&nbsp;</a></span>equilibrium_get_gp_ti_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ti_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the two indicies. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e" title="Get the ion temperature gp kernel value for the two indicies.">vmec_equilibrium::vmec_get_gp_ti_ij</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_ti_ij</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>ith profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a0532f8e915d83525f326d9b7c581a35e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0532f8e915d83525f326d9b7c581a35e">&#9670;&nbsp;</a></span>equilibrium_get_gp_ti_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_gp_ti_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of ion temperature gp kernel hyper parameters. </p>
-<p>This method is virtual. The actual getting of the number of hyper parameters should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61" title="Get the number of ion temperature gp kernel hyper parameters.">vmec_equilibrium::vmec_get_gp_ti_num_hyper_param</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_gp_ti_num_hyper_param</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="aebf430af623ee696d366dcfb93022e7c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aebf430af623ee696d366dcfb93022e7c">&#9670;&nbsp;</a></span>equilibrium_get_gp_ti_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ti_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and index. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb" title="Get the ion temperature gp kernel value for the position and index.">vmec_equilibrium::vmec_get_gp_ti_pi</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a60a0c3b99f3ebabcb67039e76bb6bbb4" title="Get the ion temperature gp kernel value for the position and index.">siesta_equilibrium::siesta_get_gp_ti_pi</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="acdd822f6042f77c085ed93034101f7da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acdd822f6042f77c085ed93034101f7da">&#9670;&nbsp;</a></span>equilibrium_get_gp_ti_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_gp_ti_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and position. </p>
-<p>This method is virtual. The actual getting of the kernel function should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2" title="Get the ion temperature gp kernel value for the position and position.">vmec_equilibrium::vmec_get_gp_ti_pp</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2" title="Get the ion temperature gp kernel value for the position and position.">siesta_equilibrium::siesta_get_gp_ti_pp</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the gp kernel is not implmented for all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a5e269ab9a6543c2c2dd4900ae96c19b8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5e269ab9a6543c2c2dd4900ae96c19b8">&#9670;&nbsp;</a></span>equilibrium_get_grid_size()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_grid_size </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get radial grid size. </p>
-<p>This method is virtual. The actual getting of the radial grid size should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1" title="Get radial grid size.">vmec_equilibrium::vmec_get_grid_size</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388" title="Get radial grid size.">siesta_equilibrium::siesta_get_grid_size</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Size of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="a382a991c74aed8d63e537d6b49b66918"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a382a991c74aed8d63e537d6b49b66918">&#9670;&nbsp;</a></span>equilibrium_get_grid_start()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_grid_start </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get start of the radial grid. </p>
-<p>This method is virtual. The actual getting of the radial grid start should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff" title="Get start of the radial grid.">vmec_equilibrium::vmec_get_grid_start</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_grid_start</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Start of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="a59825e329aec07515b5ebedf413a2ff4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a59825e329aec07515b5ebedf413a2ff4">&#9670;&nbsp;</a></span>equilibrium_get_grid_stop()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_grid_stop </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get stop of the radial grid. </p>
-<p>This method is virtual. The actual getting of the radial grid stop should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4" title="Get radial grid size.">vmec_equilibrium::vmec_get_grid_stop</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_grid_stop</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Stop of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="a1c72df061afb532ff36b388f652f08c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1c72df061afb532ff36b388f652f08c9">&#9670;&nbsp;</a></span>equilibrium_get_int_b_dphi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_int_b_dphi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the loop integrated magnetic field at a position. </p>
-<p>This method is virtual. The actual getting of the loop integrated magnetic field should be handled by a subclass method. Returns the closed loop integration of the magnetic field to determine the enclosed current. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_Int_B_dphi </dd>
-<dd>
-vacuum_equilibrium::vacuum_get_Int_B_dphi </dd>
-<dd>
-siesta_equilibrium::siesta_get_Int_B_dphi</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to integrate about. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>Poloidal angle to integrate about. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The loop integrated magnetic field at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ab796210f7567a4b026b031859fa1e6ee"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab796210f7567a4b026b031859fa1e6ee">&#9670;&nbsp;</a></span>equilibrium_get_magnetic_volume_jphigrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer equilibrium::equilibrium_get_magnetic_volume_jphigrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jphi grid points. </p>
-<p>This method is virtual. The actual getting of the jphi grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37" title="Get volume magnetic volume integration jphi grid points.">vmec_equilibrium::vmec_get_magnetic_volume_jphigrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_magnetic_volume_jphigrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The jphi grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a4beab3efa39f5999f28f554b089a32d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4beab3efa39f5999f28f554b089a32d6">&#9670;&nbsp;</a></span>equilibrium_get_magnetic_volume_jrgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer equilibrium::equilibrium_get_magnetic_volume_jrgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jr grid points. </p>
-<p>This method is virtual. The actual getting of the jr grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a" title="Get volume magnetic volume integration jr grid points.">vmec_equilibrium::vmec_get_magnetic_volume_jrgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_magnetic_volume_jrgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The jr grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ae1aae7df78c798deb4408bc38acd2b62"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae1aae7df78c798deb4408bc38acd2b62">&#9670;&nbsp;</a></span>equilibrium_get_magnetic_volume_jzgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer equilibrium::equilibrium_get_magnetic_volume_jzgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jz grid points. </p>
-<p>This method is virtual. The actual getting of the jz grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16" title="Get volume magnetic volume integration jz grid points.">vmec_equilibrium::vmec_get_magnetic_volume_jzgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_magnetic_volume_jzgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The jz grid points. </dd></dl>
-
-</div>
-</div>
-<a id="adbb086288f87bedec9abed1d02888dfc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adbb086288f87bedec9abed1d02888dfc">&#9670;&nbsp;</a></span>equilibrium_get_magnetic_volume_rgrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer equilibrium::equilibrium_get_magnetic_volume_rgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration radial grid points. </p>
-<p>This method is virtual. The actual getting of the radial grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02" title="Get volume magnetic volume integration radial grid points.">vmec_equilibrium::vmec_get_magnetic_volume_rgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_magnetic_volume_rgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a58181cf1609d1dafa8e377746b4aafe3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a58181cf1609d1dafa8e377746b4aafe3">&#9670;&nbsp;</a></span>equilibrium_get_magnetic_volume_zgrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer equilibrium::equilibrium_get_magnetic_volume_zgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration z grid points. </p>
-<p>This method is virtual. The actual getting of the z grid points should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a" title="Get volume magnetic volume integration z grid points.">vmec_equilibrium::vmec_get_magnetic_volume_zgrid</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_magnetic_volume_zgrid</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The z grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a9122ee41d8ac4a6c3358ce3d10dca3b5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9122ee41d8ac4a6c3358ce3d10dca3b5">&#9670;&nbsp;</a></span>equilibrium_get_ne_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer equilibrium::equilibrium_get_ne_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density profile af array. </p>
-<p>This method is virtual. The actual getting of the af array should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc" title="Gets the electron density profile af array.">vmec_equilibrium::vmec_get_ne_af</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_ne_af</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron density profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="a60b8c388b37c1b3d70e7b04e4bad489e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a60b8c388b37c1b3d70e7b04e4bad489e">&#9670;&nbsp;</a></span>equilibrium_get_ne_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_ne_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a cartesian position. </p>
-<p>This method is virtual. The actual getting of the electron density should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_ne </dd>
-<dd>
-siesta_equilibrium::siesta_get_ne</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the electron density is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="af3822a738d14872a1c63368f209493b1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af3822a738d14872a1c63368f209493b1">&#9670;&nbsp;</a></span>equilibrium_get_ne_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_ne_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a radial position. </p>
-<p>This method is virtual. The actual getting of the electron density should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_ne </dd>
-<dd>
-siesta_equilibrium::siesta_get_ne</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at r. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the electron density is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a7a63ef3e466a352bb9b1e36673f07daf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7a63ef3e466a352bb9b1e36673f07daf">&#9670;&nbsp;</a></span>equilibrium_get_p_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_p_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a cartesian position. </p>
-<p>This method is virtual. The actual getting of the plasma pressure should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_p </dd>
-<dd>
-siesta_equilibrium::siesta_get_p</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the plasma pressure is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a919f2f345ba01dc5c557c50f69c17227"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a919f2f345ba01dc5c557c50f69c17227">&#9670;&nbsp;</a></span>equilibrium_get_p_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_p_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a radial position. </p>
-<p>This method is virtual. The actual getting of the plasma pressure should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_p </dd>
-<dd>
-siesta_equilibrium::siesta_get_p</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Cartesian position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at r. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the plasma pressure is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a1ba4b1fcc75d9c108010f5d4d2ac841f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1ba4b1fcc75d9c108010f5d4d2ac841f">&#9670;&nbsp;</a></span>equilibrium_get_param_id()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_param_id </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the id for a reconstruction parameter. </p>
-<p>This method is virtual. The actual getting of the reconstruction parameter id should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24" title="Get the id for a reconstruction parameter.">vmec_equilibrium::vmec_get_param_id</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#a8cb64503465b60227dc26f404b446d46" title="Get the id for a reconstruction parameter.">vacuum_equilibrium::vacuum_get_param_id</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3" title="Get the id for a reconstruction parameter.">siesta_equilibrium::siesta_get_param_id</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of a reconstruction parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The id for a reconstruction parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a53677debed221aa3ab4a836e965e9a41"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53677debed221aa3ab4a836e965e9a41">&#9670;&nbsp;</a></span>equilibrium_get_param_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character(len=data_name_length) function equilibrium::equilibrium_get_param_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the name of a reconstruction equilibrium parameter. </p>
-<p>This method is virtual. The actual getting of the reconstruction parameter name should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332" title="Get the name of a reconstruction VMEC parameter.">vmec_equilibrium::vmec_get_param_name</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#ace1fd5735aff18c72ca2191af66281d8" title="Get the name of a reconstruction vacuum parameter.">vacuum_equilibrium::vacuum_get_param_name</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d" title="Get the name of a reconstruction siesta parameter.">siesta_equilibrium::siesta_get_param_name</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a9f245806e056deef11873271976af9eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9f245806e056deef11873271976af9eb">&#9670;&nbsp;</a></span>equilibrium_get_param_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_param_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the value of a reconstruction equilibrium parameter. </p>
-<p>This method is virtual. The actual getting of the reconstruction parameter value should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73" title="Get the value of a reconstruction VMEC parameter.">vmec_equilibrium::vmec_get_param_value</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#a7fcbc5750ae0dc10b13291b13254e1c3" title="Get the value of a reconstruction vacuum parameter.">vacuum_equilibrium::vacuum_get_param_value</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60" title="Get the value of a reconstruction siesta parameter.">siesta_equilibrium::siesta_get_param_value</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a6761083f9efa93db8f53826785bce684"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6761083f9efa93db8f53826785bce684">&#9670;&nbsp;</a></span>equilibrium_get_plasma_edge()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function equilibrium::equilibrium_get_plasma_edge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>z</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the r and z positions of the outer surface at a toroidal angle. </p>
-<p>This method is virtual. The actual getting of the magnetic field vector should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79" title="Gets the r and z positions of the outer surface at a toroidal angle.">vmec_equilibrium::vmec_get_plasma_edge</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8" title="Gets the r and z positions of the outer surface at a toroidal angle.">siesta_equilibrium::siesta_get_plasma_edge</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>Toroidal angle to determine the outer surface at. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">r</td><td>The radial postions of the other surface in a single toroidal angle. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">z</td><td>The Z postions of the other surface in a single toroidal angle. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The number of elements in the r and z arrays.</dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000002">Todo:</a></b></dt><dd>An "edge" could be defined as a the last field line that intersects a limiter for the vacuum case. By defineing a r_last parameter, a feild line can be followed around the machine. When that field line intersecs the desired phi plane, record the r and z positions. Field line following will also need to be performed for siesta. </dd></dl>
-
-</div>
-</div>
-<a id="a6e162c86fa7e87cd3a96f79bfb3e7c3d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6e162c86fa7e87cd3a96f79bfb3e7c3d">&#9670;&nbsp;</a></span>equilibrium_get_sxrem_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer equilibrium::equilibrium_get_sxrem_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity profile af array. </p>
-<p>This method is virtual. The actual getting of the af array should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265" title="Gets the soft x-ray emissivity profile af array.">vmec_equilibrium::vmec_get_sxrem_af</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_sxrem_af</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the soft x-ray emissivity profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="a4f0300c0005dac19977a8e5577cdb3d4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4f0300c0005dac19977a8e5577cdb3d4">&#9670;&nbsp;</a></span>equilibrium_get_sxrem_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_sxrem_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a cartesian position. </p>
-<p>This method is virtual. The actual getting of the soft x-ray emissivity should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_sxrem </dd>
-<dd>
-siesta_equilibrium::siesta_get_sxrem</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the soft x-ray emissivity is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="ab11a58272050c4781b094ac7dd37fa57"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab11a58272050c4781b094ac7dd37fa57">&#9670;&nbsp;</a></span>equilibrium_get_sxrem_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_sxrem_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a radial position. </p>
-<p>This method is virtual. The actual getting of the soft x-ray emissivity should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_sxrem </dd>
-<dd>
-siesta_equilibrium::siesta_get_sxrem</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the soft x-ray emissivity is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a3d3fcf615ad1a19de07e4306cde0ac23"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d3fcf615ad1a19de07e4306cde0ac23">&#9670;&nbsp;</a></span>equilibrium_get_te_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer equilibrium::equilibrium_get_te_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature profile af array. </p>
-<p>This method is virtual. The actual getting of the af array should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b" title="Gets the electron temperature profile af array.">vmec_equilibrium::vmec_get_te_af</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_te_af</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron temperature profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="afa991dfc32d3ade420caa527fc14acf5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afa991dfc32d3ade420caa527fc14acf5">&#9670;&nbsp;</a></span>equilibrium_get_te_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_te_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a cartesian position. </p>
-<p>This method is virtual. The actual getting of the electron temperature should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_te </dd>
-<dd>
-siesta_equilibrium::siesta_get_te</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the electron temperature is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a3428a3b6b5837e711921ebe3fceaf412"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3428a3b6b5837e711921ebe3fceaf412">&#9670;&nbsp;</a></span>equilibrium_get_te_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_te_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a radial position. </p>
-<p>This method is virtual. The actual getting of the electron temperature should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_te </dd>
-<dd>
-siesta_equilibrium::siesta_get_te</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at r. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the electron temperature is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a407d4263b4a24d72f683f7beecff4620"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a407d4263b4a24d72f683f7beecff4620">&#9670;&nbsp;</a></span>equilibrium_get_ti_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer equilibrium::equilibrium_get_ti_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature profile af array. </p>
-<p>This method is virtual. The actual getting of the af array should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1" title="Gets the ion temperature profile af array.">vmec_equilibrium::vmec_get_ti_af</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_ti_af</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron ion profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="a1d4c6548457108373fe2e9daee2f1f14"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d4c6548457108373fe2e9daee2f1f14">&#9670;&nbsp;</a></span>equilibrium_get_ti_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_ti_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a cartesian position. </p>
-<p>This method is virtual. The actual getting of the electron temperature should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_ti </dd>
-<dd>
-siesta_equilibrium::siesta_get_ti</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at x_cart. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the ion temperature is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="acb7c48ff5b0f7db28ffb917ca51beb4f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb7c48ff5b0f7db28ffb917ca51beb4f">&#9670;&nbsp;</a></span>equilibrium_get_ti_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_ti_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a radial position. </p>
-<p>This method is virtual. The actual getting of the ion temperature should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_get_ti </dd>
-<dd>
-siesta_equilibrium::siesta_get_ti</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>Cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at r. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Note the ion temperature is not relevant to all equilibrium types. For instance, vacuum equilibrium should not override this method. </dd></dl>
-
-</div>
-</div>
-<a id="a817f1fd0217a2fe0774efcfebbbbc72c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a817f1fd0217a2fe0774efcfebbbbc72c">&#9670;&nbsp;</a></span>equilibrium_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">recursive character (len=data_name_length) function equilibrium::equilibrium_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a reconstruction parameter. </p>
-<p>This method is virtual. The actual check should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde" title="Gets a discription of the equilibrium type.">vmec_equilibrium::vmec_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#a24c3721f5e87dcde8c0f1b3c41226f59" title="Gets a discription of the equilibrium type.">vacuum_equilibrium::vacuum_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#ae5a15e82b88abb835199195da719b0be" title="Gets a discription of the equilibrium type.">siesta_equilibrium::siesta_get_type</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A signal_class instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the signal type. </dd></dl>
-
-</div>
-</div>
-<a id="ac2027b4e4ea0c3c21baba1b57f5a2ddc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac2027b4e4ea0c3c21baba1b57f5a2ddc">&#9670;&nbsp;</a></span>equilibrium_get_volume_int_element()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function equilibrium::equilibrium_get_volume_int_element </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume integration element. </p>
-<p>This method is virtual. The actual getting of the volume integration element should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27" title="Get volume integration element.">vmec_equilibrium::vmec_get_volume_int_element</a> </dd>
-<dd>
-siesta_equilibrium::siesta_get_volume_int_element</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The volume integration element. </dd></dl>
-
-</div>
-</div>
-<a id="a3d5e4a4eb04a0a8d93c090ebfdd8ce89"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">&#9670;&nbsp;</a></span>equilibrium_is_2d_array()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function equilibrium::equilibrium_is_2d_array </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a 2d array. </p>
-<p>This method is virtual. The actual check should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406" title="Checks if a parameter id is a 2d array.">vmec_equilibrium::vmec_is_2d_array</a> </dd>
-<dd>
-siesta_equilibrium::siesta_is_2d_array</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a 2d array and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="ab34978d83d0ca311e835f259912979e0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab34978d83d0ca311e835f259912979e0">&#9670;&nbsp;</a></span>equilibrium_is_recon_param()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function equilibrium::equilibrium_is_recon_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a reconstruction parameter. </p>
-<p>This method is virtual. The actual check should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75" title="Checks if a parameter id is a reconstruction parameter.">vmec_equilibrium::vmec_is_recon_param</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#a13814d249d92208518d01f487e48b27f" title="Checks if a parameter id is a reconstruction parameter.">vacuum_equilibrium::vacuum_is_recon_param</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630" title="Checks if a parameter id is a reconstruction parameter.">siesta_equilibrium::siesta_is_recon_param</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a reconstruction parameter and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a99a35f56d6a8d501f52c0b4ac8447a03"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a99a35f56d6a8d501f52c0b4ac8447a03">&#9670;&nbsp;</a></span>equilibrium_is_scaler_value()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function equilibrium::equilibrium_is_scaler_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a scaler value. </p>
-<p>This method is virtual. The actual check should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd" title="Checks if a parameter id is a scaler value.">vmec_equilibrium::vmec_is_scaler_value</a> </dd>
-<dd>
-siesta_equilibrium::siesta_is_scaler_value</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a scaler and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a7549affbf460dbc78e762e99b6ce58de"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7549affbf460dbc78e762e99b6ce58de">&#9670;&nbsp;</a></span>equilibrium_is_using_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function equilibrium::equilibrium_is_using_point </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a the point magnetics are being used. </p>
-<p>This method is virtual. The actual check should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2" title="Checks if a the point magnetics are being used.">vmec_equilibrium::vmec_is_using_point</a> </dd>
-<dd>
-siesta_equilibrium::siesta_is_using_point</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the point magnetic are being used. </dd></dl>
-
-</div>
-</div>
-<a id="af19a9f34a7786fd3cb34acf466c50d5f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af19a9f34a7786fd3cb34acf466c50d5f">&#9670;&nbsp;</a></span>equilibrium_read_vac_file()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_read_vac_file </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Loads the vacuum magnetic field file. </p>
-<p>Loads the vacuum magnetic field file. This will get on multiple processes to allow parallel loading of vacuum files. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627" title="Loads the vacuum magnetic field file.">vmec_equilibrium::vmec_read_vac_file</a> </dd>
-<dd>
-siesta_equilibrium::siesta_read_vac_file</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the changed current. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for VMEC. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a032df1c41a8aa23eb9b8d7434118a472"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a032df1c41a8aa23eb9b8d7434118a472">&#9670;&nbsp;</a></span>equilibrium_reset_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_reset_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reset the internal state of the equilibrium. </p>
-<p>This method is virtual. The actual reseting of the equilibrium state should be handled by a subclass method. Sub classes need to make sure that the equilibrium is reset to a converged state. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a57b943ab3a3657eb188595c753695219" title="Reset the internal state of the equilibrium.">vmec_equilibrium::vmec_reset_state</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56" title="Reset the internal state of the equilibrium.">siesta_equilibrium::siesta_reset_state</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5d4f0e13ecadfc197de9c0c4efa47033"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d4f0e13ecadfc197de9c0c4efa47033">&#9670;&nbsp;</a></span>equilibrium_restart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_restart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Restart equilibrium. </p>
-<p>This method is virtual. The actual restarting of the equilibrium variables should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd" title="Restart vmec from the result file.">vmec_equilibrium::vmec_restart</a> and </dd>
-<dd>
-siesta_equilibrium::siesta_restart</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to write variables to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a53216bd25b330737a77a7638a9e43303"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53216bd25b330737a77a7638a9e43303">&#9670;&nbsp;</a></span>equilibrium_save_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_save_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Save the internal state of the equilibrium. </p>
-<p>This method is virtual. The actual saving of the equilibrium state should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aeced22814edb5c90369367fe8ab1fcb0" title="Save the internal state of the equilibrium.">vmec_equilibrium::vmec_save_state</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b" title="Save the internal state of the equilibrium.">siesta_equilibrium::siesta_save_state</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a071ab01f0bd3d33683db0e9f642e3d8a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a071ab01f0bd3d33683db0e9f642e3d8a">&#9670;&nbsp;</a></span>equilibrium_set_magnetic_cache_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_set_magnetic_cache_point </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_axi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the magnetic cache of the equilibrium for points. </p>
-<p>This method is virtual. The actual setting of the magnetic cache should be handled a subclass method. The magnetic cache is any pre compuation that needs to be performed so that magnetic signals may compute a modeled signal. If the equilibrium does not require any information to be cached, this method does not need to be overridden. This method is meant to only be called once to tell the equilibrium it needs to use a magnetic cache. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_set_magnetic_cache </dd>
-<dd>
-siesta_equilibrium::siesta_set_magnetic_cache</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_axi</td><td>Magnetics can subtract off axisymmetric components. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa87a9dd2aa8a5b0efa749d566b57510b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa87a9dd2aa8a5b0efa749d566b57510b">&#9670;&nbsp;</a></span>equilibrium_set_magnetic_cache_response()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_set_magnetic_cache_response </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>response_object</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the magnetic cache of the equilibrium for the magnetic response. </p>
-<p>This method is virtual. The actual setting of the magnetic cache should be handled a subclass method. The magnetic cache is any pre compuation that needs to be performed so that magnetic signals may compute a modeled signal. If the equilibrium does not require any information to be cached, this method does not need to be overridden. This method is meant to only be called once to tell the equilibrium it needs to use a magnetic cache. </p><dl class="section see"><dt>See also</dt><dd>vmec_equilibrium::vmec_set_magnetic_cache </dd>
-<dd>
-siesta_equilibrium::siesta_set_magnetic_cache</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">response_object</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response::magnetic_response_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae25254f1165258631e26d4a34b34c206"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae25254f1165258631e26d4a34b34c206">&#9670;&nbsp;</a></span>equilibrium_set_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_set_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the value of a reconstruction equilibrium parameter. </p>
-<p>This method is virtual. The actual setting of the parameter should be handled by a subclass method. The subclass is responsible updating the state flags. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc" title="Sets the value of a reconstruction equilibrium parameter.">vmec_equilibrium::vmec_set_param</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#aba6f072e24c78c4c374bf5f037b4f9d6" title="Sets the value of a reconstruction equilibrium parameter.">vacuum_equilibrium::vacuum_set_param</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595" title="Sets the value of a reconstruction equilibrium parameter.">siesta_equilibrium::siesta_set_param</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2703de0db0bd4621825db0849e8c4521"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2703de0db0bd4621825db0849e8c4521">&#9670;&nbsp;</a></span>equilibrium_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child equilibrium state to the parent. </p>
-<p>Syncs data between a child and the parent process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Reconstruction rank to sync. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a90f3a500648b3d3540493782df9f29c7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a90f3a500648b3d3540493782df9f29c7">&#9670;&nbsp;</a></span>equilibrium_sync_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_sync_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize the equilibrium state to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a52fe0a7f6fe457ba1e1397c04bea5d41"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a52fe0a7f6fe457ba1e1397c04bea5d41">&#9670;&nbsp;</a></span>equilibrium_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the equilibrium to an output file. </p>
-<p>This method is virtual. The actual writing of the equilibrium should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932" title="Write out the equilibrium to an output file.">vmec_equilibrium::vmec_write</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#affa6def614997ef004a5a2f6848ba546" title="Write out the equilibrium to an output file.">vacuum_equilibrium::vacuum_write</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547" title="Write out the equilibrium to an output file.">siesta_equilibrium::siesta_write</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acd20e3a5ae2c924b620d654c076dc81e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd20e3a5ae2c924b620d654c076dc81e">&#9670;&nbsp;</a></span>equilibrium_write_init_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_write_init_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write inital data to NetCDF result file. </p>
-<p>This method is virtual. The actual writing of the equilibrium variables should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#af2834de9b8119aa4a0e70250df21e96a" title="Write inital data to NetCDF result file.">vmec_equilibrium::vmec_write_init_data</a> </dd>
-<dd>
-siesta_equilibrium::siesta_write_init_data</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a84e1df0703c7493f444fa5dc0a392d34"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a84e1df0703c7493f444fa5dc0a392d34">&#9670;&nbsp;</a></span>equilibrium_write_input()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_write_input </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the equilibrium to an output file. </p>
-<p>This method is virtual. The actual writing of the equilibrium should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932" title="Write out the equilibrium to an output file.">vmec_equilibrium::vmec_write</a> </dd>
-<dd>
-<a class="el" href="namespacevacuum__equilibrium.html#affa6def614997ef004a5a2f6848ba546" title="Write out the equilibrium to an output file.">vacuum_equilibrium::vacuum_write</a> </dd>
-<dd>
-<a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547" title="Write out the equilibrium to an output file.">siesta_equilibrium::siesta_write</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step number to append to input filename. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a502ea3221e3de780f53e85f8832eca33"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a502ea3221e3de780f53e85f8832eca33">&#9670;&nbsp;</a></span>equilibrium_write_step_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine equilibrium::equilibrium_write_step_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write step data to NetCDF result file. </p>
-<p>This method is virtual. The actual writing of the equilibrium variables should be handled by a subclass method. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a84eefb3c064582b6c393f00a5a7dce78" title="Write step data to NetCDF result file.">vmec_equilibrium::vmec_write_step_data</a> and </dd>
-<dd>
-siesta_equilibrium::siesta_write_step_data</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to write variables to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<p>Represents a signal obtained by integrating around the magnetic field to get the current enclosed in the Z direction using Ampere's Law. Defines the base class of the type <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>.  
-<a href="namespaceextcurz.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a external Z currents enclosed by an inegration loop.  <a href="structextcurz_1_1extcurz__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a3e11ae09f2000689c4358cda7080e6e4"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceextcurz.html#a3e11ae09f2000689c4358cda7080e6e4">extcurz_construct</a> (r, theta)</td></tr>
-<tr class="memdesc:a3e11ae09f2000689c4358cda7080e6e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object measureing temperature.  <a href="namespaceextcurz.html#a3e11ae09f2000689c4358cda7080e6e4">More...</a><br /></td></tr>
-<tr class="separator:a3e11ae09f2000689c4358cda7080e6e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64fa2ba707e4d8779a502a602b8218a7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceextcurz.html#a64fa2ba707e4d8779a502a602b8218a7">extcurz_destruct</a> (this)</td></tr>
-<tr class="memdesc:a64fa2ba707e4d8779a502a602b8218a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object.  <a href="namespaceextcurz.html#a64fa2ba707e4d8779a502a602b8218a7">More...</a><br /></td></tr>
-<tr class="separator:a64fa2ba707e4d8779a502a602b8218a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9b24c42a5f7fe364a234534689209c0a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceextcurz.html#a9b24c42a5f7fe364a234534689209c0a">extcurz_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a9b24c42a5f7fe364a234534689209c0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespaceextcurz.html#a9b24c42a5f7fe364a234534689209c0a">More...</a><br /></td></tr>
-<tr class="separator:a9b24c42a5f7fe364a234534689209c0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a5a26b8596d79e2a898350fd5ec3aeb"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceextcurz.html#a4a5a26b8596d79e2a898350fd5ec3aeb">extcurz_get_type</a> (this)</td></tr>
-<tr class="memdesc:a4a5a26b8596d79e2a898350fd5ec3aeb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the extcurz type.  <a href="namespaceextcurz.html#a4a5a26b8596d79e2a898350fd5ec3aeb">More...</a><br /></td></tr>
-<tr class="separator:a4a5a26b8596d79e2a898350fd5ec3aeb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Represents a signal obtained by integrating around the magnetic field to get the current enclosed in the Z direction using Ampere's Law. Defines the base class of the type <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a3e11ae09f2000689c4358cda7080e6e4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3e11ae09f2000689c4358cda7080e6e4">&#9670;&nbsp;</a></span>extcurz_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>) function, pointer extcurz::extcurz_construct </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object measureing temperature. </p>
-<p>Allocates memory and initializes a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>The radial position to integrate at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>The poloidal angle to integrate at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a64fa2ba707e4d8779a502a602b8218a7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a64fa2ba707e4d8779a502a602b8218a7">&#9670;&nbsp;</a></span>extcurz_destruct()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine extcurz::extcurz_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9b24c42a5f7fe364a234534689209c0a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9b24c42a5f7fe364a234534689209c0a">&#9670;&nbsp;</a></span>extcurz_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) extcurz::extcurz_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>Calculates the inclused Z current from Ampere's Law from an loop integration of the magnetic field. The loop integrated magnetic field is provided by equilibrium::equilibrium_get_Int_B_dphi</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a4a5a26b8596d79e2a898350fd5ec3aeb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a5a26b8596d79e2a898350fd5ec3aeb">&#9670;&nbsp;</a></span>extcurz_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function extcurz::extcurz_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the extcurz type. </p>
-<p>Returns a description of the extcurz type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the extcurz type. </dd></dl>
-
-</div>
-</div>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
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-<div class="title">f1dim_mod Module Reference</div>  </div>
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-
-<p>Module containing Fletcher-Reeves (non-linear Conjugate Gradient) routines including linear search algorithm.  
-<a href="namespacef1dim__mod.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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-<tr class="memdesc:a2a65481cee519ad72674cee95c616865"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fletcher-Reeves-Polak-Ribiere minimization. <br /></td></tr>
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-<tr class="memdesc:a71240e7133d89406a60514ef4593a933"><td class="mdescLeft">&#160;</td><td class="mdescRight">Function to compute the MHD energy used in line search. <br /></td></tr>
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-<tr class="memdesc:aadcb64681f8314ab45d4c0a641831bcf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Function to compute gradient of MHD energy. <br /></td></tr>
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-<div class="textblock"><p>Module containing Fletcher-Reeves (non-linear Conjugate Gradient) routines including linear search algorithm. </p>
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">file_opts Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains cross platform routines for manipulating files on the file system. Defines a functions to move, copy and delete a file that is cross platform. While, system contains a crossplatform way to call a command line commands, the command used will vary by platform.  
-<a href="namespacefile__opts.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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-<tr class="memdesc:a8bc5fac5ddd491f227e5707d4aad9c31"><td class="mdescLeft">&#160;</td><td class="mdescRight">Moves the source file to the destination.  <a href="namespacefile__opts.html#a8bc5fac5ddd491f227e5707d4aad9c31">More...</a><br /></td></tr>
-<tr class="separator:a8bc5fac5ddd491f227e5707d4aad9c31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a075d04f0f20493be9b1f3cc8f750e51d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#a075d04f0f20493be9b1f3cc8f750e51d">copy_file</a> (file_source, file_dest, error)</td></tr>
-<tr class="memdesc:a075d04f0f20493be9b1f3cc8f750e51d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copies the source file to the destination.  <a href="namespacefile__opts.html#a075d04f0f20493be9b1f3cc8f750e51d">More...</a><br /></td></tr>
-<tr class="separator:a075d04f0f20493be9b1f3cc8f750e51d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa53312bc8b319948cf70e47974073d4a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#aa53312bc8b319948cf70e47974073d4a">delete_file</a> (file_source, error)</td></tr>
-<tr class="memdesc:aa53312bc8b319948cf70e47974073d4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deletes a file.  <a href="namespacefile__opts.html#aa53312bc8b319948cf70e47974073d4a">More...</a><br /></td></tr>
-<tr class="separator:aa53312bc8b319948cf70e47974073d4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa038029606ef34c059b42be25c60c6e8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#aa038029606ef34c059b42be25c60c6e8">create_directory</a> (directory_source, error)</td></tr>
-<tr class="memdesc:aa038029606ef34c059b42be25c60c6e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Makes a directory.  <a href="namespacefile__opts.html#aa038029606ef34c059b42be25c60c6e8">More...</a><br /></td></tr>
-<tr class="separator:aa038029606ef34c059b42be25c60c6e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae523a497a9dae8d43c3d652252def711"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#ae523a497a9dae8d43c3d652252def711">delete_directory</a> (directory_source, error)</td></tr>
-<tr class="memdesc:ae523a497a9dae8d43c3d652252def711"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deletes a directory.  <a href="namespacefile__opts.html#ae523a497a9dae8d43c3d652252def711">More...</a><br /></td></tr>
-<tr class="separator:ae523a497a9dae8d43c3d652252def711"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae54f2f1009cfa2dadf917d1b16ab8753"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#ae54f2f1009cfa2dadf917d1b16ab8753">is_absolute_path</a> (path)</td></tr>
-<tr class="memdesc:ae54f2f1009cfa2dadf917d1b16ab8753"><td class="mdescLeft">&#160;</td><td class="mdescRight">Queries if the a path is absoulte.  <a href="namespacefile__opts.html#ae54f2f1009cfa2dadf917d1b16ab8753">More...</a><br /></td></tr>
-<tr class="separator:ae54f2f1009cfa2dadf917d1b16ab8753"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac3872a3031c433141a7a01b3091ce36b"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacefile__opts.html#a6d4bd296141c4d14535260607950dae4">path_length</a>) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#ac3872a3031c433141a7a01b3091ce36b">get_path_of_file</a> (file)</td></tr>
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-<tr class="separator:ac3872a3031c433141a7a01b3091ce36b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a47fe58c2184957c931c19f1e979abac2"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacefile__opts.html#a6d4bd296141c4d14535260607950dae4">path_length</a>) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#a47fe58c2184957c931c19f1e979abac2">build_path</a> (path, name)</td></tr>
-<tr class="memdesc:a47fe58c2184957c931c19f1e979abac2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a path.  <a href="namespacefile__opts.html#a47fe58c2184957c931c19f1e979abac2">More...</a><br /></td></tr>
-<tr class="separator:a47fe58c2184957c931c19f1e979abac2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a585eb600ae9abdc60df1acf61c17b31b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#a585eb600ae9abdc60df1acf61c17b31b">change_directory</a> (path, error)</td></tr>
-<tr class="memdesc:a585eb600ae9abdc60df1acf61c17b31b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Change working directory.  <a href="namespacefile__opts.html#a585eb600ae9abdc60df1acf61c17b31b">More...</a><br /></td></tr>
-<tr class="separator:a585eb600ae9abdc60df1acf61c17b31b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefile__opts.html#a6d4bd296141c4d14535260607950dae4">path_length</a> = 300</td></tr>
-<tr class="memdesc:a6d4bd296141c4d14535260607950dae4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Length of file paths. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains cross platform routines for manipulating files on the file system. Defines a functions to move, copy and delete a file that is cross platform. While, system contains a crossplatform way to call a command line commands, the command used will vary by platform. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a47fe58c2184957c931c19f1e979abac2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a47fe58c2184957c931c19f1e979abac2">&#9670;&nbsp;</a></span>build_path()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">character (len=<a class="el" href="namespacefile__opts.html#a6d4bd296141c4d14535260607950dae4">path_length</a>) function file_opts::build_path </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Builds a path. </p>
-<p>Builds a path by concatenating a string onto a path.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">path</td><td>Existing path. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>String to add to path. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The new path. </dd></dl>
-
-</div>
-</div>
-<a id="a585eb600ae9abdc60df1acf61c17b31b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a585eb600ae9abdc60df1acf61c17b31b">&#9670;&nbsp;</a></span>change_directory()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine file_opts::change_directory </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Change working directory. </p>
-<p>Changes the current working directory of the running process. CHDIR is an extension on many compilers. Check for compatability.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">path</td><td>Path of the working directory to change to. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">error</td><td>Returned error code. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a075d04f0f20493be9b1f3cc8f750e51d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a075d04f0f20493be9b1f3cc8f750e51d">&#9670;&nbsp;</a></span>copy_file()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine file_opts::copy_file </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_source</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_dest</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Copies the source file to the destination. </p>
-<p>Copies a file by calling the appropriate command for the platform. If the destination is an existing file, that file will be overwritten.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_source</td><td>The file to copy. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_dest</td><td>The destination of the copied file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">error</td><td>The result of the copy. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa038029606ef34c059b42be25c60c6e8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa038029606ef34c059b42be25c60c6e8">&#9670;&nbsp;</a></span>create_directory()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine file_opts::create_directory </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>directory_source</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Makes a directory. </p>
-<p>Creates new directory by calling the appropriate command for the plaform.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">directory_source</td><td>The directory to create. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">error</td><td>The result of the copy. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae523a497a9dae8d43c3d652252def711"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae523a497a9dae8d43c3d652252def711">&#9670;&nbsp;</a></span>delete_directory()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine file_opts::delete_directory </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>directory_source</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deletes a directory. </p>
-<p>Deletes directory by calling the appropriate command for the plaform. This deletes all files inside the directory as well.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">directory_source</td><td>The directory to delete. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">error</td><td>The result of the copy. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa53312bc8b319948cf70e47974073d4a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa53312bc8b319948cf70e47974073d4a">&#9670;&nbsp;</a></span>delete_file()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine file_opts::delete_file </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_source</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>error</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Deletes a file. </p>
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-<p>Module contains subroutines for computing FFT on parallel radial intervals. Converts quantities between real and fourier space. Note fixarray must be called once before call any of the Fourier subroutines to calculate all necessary sine and cosine factors on a fixed mesh of collocation angles.  
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-<tr class="memdesc:ae8eaa592cc2946be1c464738f6d41b59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object.  <a href="namespacefourier.html#ae8eaa592cc2946be1c464738f6d41b59">More...</a><br /></td></tr>
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-<tr class="separator:a5ac68c96514704e40ab8b27470b4cf21"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a500f54a6328d5c7e34a891871425e8db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a quantity from real to fourier space in pest coordinates.  <a href="namespacefourier.html#a500f54a6328d5c7e34a891871425e8db">More...</a><br /></td></tr>
-<tr class="separator:a500f54a6328d5c7e34a891871425e8db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1624922e688e9d0d4dc3817e96dd75ae"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a1624922e688e9d0d4dc3817e96dd75ae">fourier_tomnsp_2d</a> (this, xuv, xmn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a1624922e688e9d0d4dc3817e96dd75ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform a 2D quantity to fourier space.  <a href="namespacefourier.html#a1624922e688e9d0d4dc3817e96dd75ae">More...</a><br /></td></tr>
-<tr class="separator:a1624922e688e9d0d4dc3817e96dd75ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af669d2453ff1041cfbcccae55bad9f7b"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#af669d2453ff1041cfbcccae55bad9f7b">fourier_tomnsp_2d_pest</a> (this, xuv, xmn, lambda, dup</td></tr>
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-<tr class="memitem:acac8a2289d22906b1e06baed62d550af"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#acac8a2289d22906b1e06baed62d550af">fourier_tomnsp_2d_u</a> (this, xuv)</td></tr>
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-<tr class="separator:acac8a2289d22906b1e06baed62d550af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9cb9afaad547575a84000f0b4d2e8e9c"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a9cb9afaad547575a84000f0b4d2e8e9c">fourier_tomnsp_2d_u_pest</a> (this, xuv, lambda, dupdu,</td></tr>
-<tr class="memdesc:a9cb9afaad547575a84000f0b4d2e8e9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum over the poloidal part.  <a href="namespacefourier.html#a9cb9afaad547575a84000f0b4d2e8e9c">More...</a><br /></td></tr>
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-<tr class="memdesc:a9cab14517df7e98ba1340143b44acb6f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum over toroidal angle.  <a href="namespacefourier.html#a9cab14517df7e98ba1340143b44acb6f">More...</a><br /></td></tr>
-<tr class="separator:a9cab14517df7e98ba1340143b44acb6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a077b192acbab552a945f1382c85ca9fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a quantity from fourier to real space in parallel.  <a href="namespacefourier.html#a077b192acbab552a945f1382c85ca9fc">More...</a><br /></td></tr>
-<tr class="separator:a077b192acbab552a945f1382c85ca9fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a27f5162fff4e2bd12c4a1130eb4aac3e">fourier_toijsp_2d</a> (this, xmn, xuv, dflag, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform a 2D quantity to real space.  <a href="namespacefourier.html#a27f5162fff4e2bd12c4a1130eb4aac3e">More...</a><br /></td></tr>
-<tr class="separator:a27f5162fff4e2bd12c4a1130eb4aac3e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af88798b860cb38f460b0e167de3de12b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aed046e4607a3671eb9be0c2ef2a375eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Round trig values to whole number for near numbers.  <a href="namespacefourier.html#aed046e4607a3671eb9be0c2ef2a375eb">More...</a><br /></td></tr>
-<tr class="separator:aed046e4607a3671eb9be0c2ef2a375eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ab15e4ffa2fcfa91b1b7372684bbfc30a">fourier_get_index</a> (this, n)</td></tr>
-<tr class="memdesc:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="mdescLeft">&#160;</td><td class="mdescRight">The the index position of the toroidal mode if it exists.  <a href="namespacefourier.html#ab15e4ffa2fcfa91b1b7372684bbfc30a">More...</a><br /></td></tr>
-<tr class="separator:ab15e4ffa2fcfa91b1b7372684bbfc30a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4331822c74c9060f004e2cc2186a058f"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a4331822c74c9060f004e2cc2186a058f">test_fourier</a> ()</td></tr>
-<tr class="memdesc:a4331822c74c9060f004e2cc2186a058f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Test fourier routines.  <a href="namespacefourier.html#a4331822c74c9060f004e2cc2186a058f">More...</a><br /></td></tr>
-<tr class="separator:a4331822c74c9060f004e2cc2186a058f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a41e6c5528ec17d73f36345622667c8ae">f_cos</a> = 0</td></tr>
-<tr class="memdesc:a41e6c5528ec17d73f36345622667c8ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cosine parity. <br /></td></tr>
-<tr class="separator:a41e6c5528ec17d73f36345622667c8ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae4d54d71b6f5a2a4ca9816d41b15136c"><td class="memItemLeft" align="right" valign="top"><a id="ae4d54d71b6f5a2a4ca9816d41b15136c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae4d54d71b6f5a2a4ca9816d41b15136c">f_sin</a> = 1</td></tr>
-<tr class="memdesc:ae4d54d71b6f5a2a4ca9816d41b15136c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sine parity. <br /></td></tr>
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-<tr class="memitem:aef77174c15ce7415c96e6098a2b77156"><td class="memItemLeft" align="right" valign="top"><a id="aef77174c15ce7415c96e6098a2b77156"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#aef77174c15ce7415c96e6098a2b77156">f_none</a> = 0</td></tr>
-<tr class="memdesc:aef77174c15ce7415c96e6098a2b77156"><td class="mdescLeft">&#160;</td><td class="mdescRight">Do not sum fouier real space transformed quantity. This is used when a stellarator symmetric parity is being converted to real space. <br /></td></tr>
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-<tr class="memitem:ac353df5825590202d5c7a2de3688e5f0"><td class="memItemLeft" align="right" valign="top"><a id="ac353df5825590202d5c7a2de3688e5f0"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ac353df5825590202d5c7a2de3688e5f0">f_ds</a> = 1</td></tr>
-<tr class="memdesc:ac353df5825590202d5c7a2de3688e5f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial derivative flag. <br /></td></tr>
-<tr class="separator:ac353df5825590202d5c7a2de3688e5f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="memItemLeft" align="right" valign="top"><a id="a60bc38ec9f367c4b73bc5badbcc3d0a7"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">f_du</a> = 2</td></tr>
-<tr class="memdesc:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Poloidal derivative flag. <br /></td></tr>
-<tr class="separator:a60bc38ec9f367c4b73bc5badbcc3d0a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed197cd20f5735b408f831cf2f9b3799"><td class="memItemLeft" align="right" valign="top"><a id="aed197cd20f5735b408f831cf2f9b3799"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">f_dv</a> = 4</td></tr>
-<tr class="memdesc:aed197cd20f5735b408f831cf2f9b3799"><td class="mdescLeft">&#160;</td><td class="mdescRight">Toroidal derivative flag. <br /></td></tr>
-<tr class="separator:aed197cd20f5735b408f831cf2f9b3799"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a380aa7707832d4030eccb0830068948d"><td class="memItemLeft" align="right" valign="top"><a id="a380aa7707832d4030eccb0830068948d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a380aa7707832d4030eccb0830068948d">f_dudv</a> = IOR(<a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">f_du</a>, <a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">f_dv</a>)</td></tr>
-<tr class="memdesc:a380aa7707832d4030eccb0830068948d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Combined toroidal and poloidal derivatives. <br /></td></tr>
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-<tr class="memitem:a35531eaf8acef68309d9ac9470dda0bc"><td class="memItemLeft" align="right" valign="top"><a id="a35531eaf8acef68309d9ac9470dda0bc"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a35531eaf8acef68309d9ac9470dda0bc">f_sum</a> = 8</td></tr>
-<tr class="memdesc:a35531eaf8acef68309d9ac9470dda0bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sum fouier real space transformed quantity. This is used when a non-stellarator symmetric parity is being converted to real space. <br /></td></tr>
-<tr class="separator:a35531eaf8acef68309d9ac9470dda0bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa7de072427fc6454e37458d7680f172"><td class="memItemLeft" align="right" valign="top"><a id="afa7de072427fc6454e37458d7680f172"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#afa7de072427fc6454e37458d7680f172">f_jac</a> = 16</td></tr>
-<tr class="memdesc:afa7de072427fc6454e37458d7680f172"><td class="mdescLeft">&#160;</td><td class="mdescRight">Quantity, contains jacobian. <br /></td></tr>
-<tr class="separator:afa7de072427fc6454e37458d7680f172"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0023db38a18486c4716f09578cb71b8"><td class="memItemLeft" align="right" valign="top"><a id="ae0023db38a18486c4716f09578cb71b8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae0023db38a18486c4716f09578cb71b8">f_con</a> = 32</td></tr>
-<tr class="memdesc:ae0023db38a18486c4716f09578cb71b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant basis. <br /></td></tr>
-<tr class="separator:ae0023db38a18486c4716f09578cb71b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="memItemLeft" align="right" valign="top"><a id="ae25c012d089b70bc7f4c1a8bad0e7b82"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ae25c012d089b70bc7f4c1a8bad0e7b82">b_ds</a> = 0</td></tr>
-<tr class="memdesc:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#ac353df5825590202d5c7a2de3688e5f0">f_ds</a> flag. <br /></td></tr>
-<tr class="separator:ae25c012d089b70bc7f4c1a8bad0e7b82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b777ae0dba1e815ae50603e7af866f8"><td class="memItemLeft" align="right" valign="top"><a id="a6b777ae0dba1e815ae50603e7af866f8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a6b777ae0dba1e815ae50603e7af866f8">b_du</a> = 1</td></tr>
-<tr class="memdesc:a6b777ae0dba1e815ae50603e7af866f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">f_du</a> flag. <br /></td></tr>
-<tr class="separator:a6b777ae0dba1e815ae50603e7af866f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7fd44450246a6feb4a9530f61656e806"><td class="memItemLeft" align="right" valign="top"><a id="a7fd44450246a6feb4a9530f61656e806"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a7fd44450246a6feb4a9530f61656e806">b_dv</a> = 2</td></tr>
-<tr class="memdesc:a7fd44450246a6feb4a9530f61656e806"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">f_dv</a> flag. <br /></td></tr>
-<tr class="separator:a7fd44450246a6feb4a9530f61656e806"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="memItemLeft" align="right" valign="top"><a id="a9e9ca0e5c35ee8c667fa98817c2f48f8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a9e9ca0e5c35ee8c667fa98817c2f48f8">b_sum</a> = 3</td></tr>
-<tr class="memdesc:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#a35531eaf8acef68309d9ac9470dda0bc">f_sum</a> flag. <br /></td></tr>
-<tr class="separator:a9e9ca0e5c35ee8c667fa98817c2f48f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a316da76b114c9060804aff5499b981a5"><td class="memItemLeft" align="right" valign="top"><a id="a316da76b114c9060804aff5499b981a5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a316da76b114c9060804aff5499b981a5">b_jac</a> = 4</td></tr>
-<tr class="memdesc:a316da76b114c9060804aff5499b981a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the <a class="el" href="namespacefourier.html#afa7de072427fc6454e37458d7680f172">f_jac</a> flag. <br /></td></tr>
-<tr class="separator:a316da76b114c9060804aff5499b981a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4bd52935e53db15768136ead24a1c673"><td class="memItemLeft" align="right" valign="top"><a id="a4bd52935e53db15768136ead24a1c673"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a4bd52935e53db15768136ead24a1c673">b_con</a> = 5</td></tr>
-<tr class="memdesc:a4bd52935e53db15768136ead24a1c673"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position of the f_co flag. <br /></td></tr>
-<tr class="separator:a4bd52935e53db15768136ead24a1c673"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab5dae82f1576d7a954417488841c81b4"><td class="memItemLeft" align="right" valign="top"><a id="ab5dae82f1576d7a954417488841c81b4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ab5dae82f1576d7a954417488841c81b4">m0</a> = 0</td></tr>
-<tr class="memdesc:ab5dae82f1576d7a954417488841c81b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">m = 0 mode. <br /></td></tr>
-<tr class="separator:ab5dae82f1576d7a954417488841c81b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac7378da676474b8d8356fafd8176f194"><td class="memItemLeft" align="right" valign="top"><a id="ac7378da676474b8d8356fafd8176f194"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ac7378da676474b8d8356fafd8176f194">m1</a> = 1</td></tr>
-<tr class="memdesc:ac7378da676474b8d8356fafd8176f194"><td class="mdescLeft">&#160;</td><td class="mdescRight">m = 1 mode. <br /></td></tr>
-<tr class="separator:ac7378da676474b8d8356fafd8176f194"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3a590891f5c6ddc4bb6849e9f3814d65"><td class="memItemLeft" align="right" valign="top"><a id="a3a590891f5c6ddc4bb6849e9f3814d65"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a3a590891f5c6ddc4bb6849e9f3814d65">m2</a> = 2</td></tr>
-<tr class="memdesc:a3a590891f5c6ddc4bb6849e9f3814d65"><td class="mdescLeft">&#160;</td><td class="mdescRight">m = 2 mode. <br /></td></tr>
-<tr class="separator:a3a590891f5c6ddc4bb6849e9f3814d65"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2dcc2c6b7198cc965d4873adc6611102"><td class="memItemLeft" align="right" valign="top"><a id="a2dcc2c6b7198cc965d4873adc6611102"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#a2dcc2c6b7198cc965d4873adc6611102">n0</a> = 0</td></tr>
-<tr class="memdesc:a2dcc2c6b7198cc965d4873adc6611102"><td class="mdescLeft">&#160;</td><td class="mdescRight">n = 0 mode. <br /></td></tr>
-<tr class="separator:a2dcc2c6b7198cc965d4873adc6611102"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad32b3261fca9f0284a553b832862c85d"><td class="memItemLeft" align="right" valign="top"><a id="ad32b3261fca9f0284a553b832862c85d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefourier.html#ad32b3261fca9f0284a553b832862c85d">n1</a> = 1</td></tr>
-<tr class="memdesc:ad32b3261fca9f0284a553b832862c85d"><td class="mdescLeft">&#160;</td><td class="mdescRight">n = 1 mode. <br /></td></tr>
-<tr class="separator:ad32b3261fca9f0284a553b832862c85d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module contains subroutines for computing FFT on parallel radial intervals. Converts quantities between real and fourier space. Note fixarray must be called once before call any of the Fourier subroutines to calculate all necessary sine and cosine factors on a fixed mesh of collocation angles. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ae8eaa592cc2946be1c464738f6d41b59"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae8eaa592cc2946be1c464738f6d41b59">&#9670;&nbsp;</a></span>fourier_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>) function, pointer fourier::fourier_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mpol</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntor</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntheta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nzeta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nfp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(-ntor:ntor), intent(in)&#160;</td>
-          <td class="paramname"><em>tor_modes</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object. Computes the othronorm and cosine and sine buffers.</p>
-<p>This subroutine computes the cosine-sine factors that will be needed when moving between Fourier and real space. All normalizations are contained in the poloidal quantities used in the Fourier to real space transformation:</p><ul>
-<li>sinmui</li>
-<li>cosmui</li>
-</ul>
-<p>Fourier representations are assumed to have stellarator symmetry: *# cosine (iparity=0): C(u, v) = sum_u sum_v (C_mn COS(mu + n*nfp*v)) *# sine (iparity=1): S(u, v) = sum_u sum_v (S_mn SIN(mu + n*nfp*v))</p>
-<p>The number of collocation points have been set initalially equal to the number of modes: theta_j = j*pi/M, j = 0,...,M Where M = mpol - 1 zeta_k = k*2*pi/(2N + 1) k = 0,...,2N Where N = ntor.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol</td><td>Number of poloidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntor</td><td>Number of toroidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntheta</td><td>Number of poloidal real grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nzeta</td><td>Number of toroidal real grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfp</td><td>Number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sym</td><td>Symmetry flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modes</td><td>Toroidal mode numbers. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a35c0f441cadb0006a1d10031283535a8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a35c0f441cadb0006a1d10031283535a8">&#9670;&nbsp;</a></span>fourier_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine fourier::fourier_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab15e4ffa2fcfa91b1b7372684bbfc30a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab15e4ffa2fcfa91b1b7372684bbfc30a">&#9670;&nbsp;</a></span>fourier_get_index()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function fourier::fourier_get_index </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>n</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>The the index position of the toroidal mode if it exists. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">n</td><td>Toroidal mode number to check the index on exit. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the mode number was found. </dd></dl>
-
-</div>
-</div>
-<a id="af88798b860cb38f460b0e167de3de12b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af88798b860cb38f460b0e167de3de12b">&#9670;&nbsp;</a></span>fourier_get_origin()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine fourier::fourier_get_origin </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mode</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>asym</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Computes the origin value of a half-mesh quantity. </p>
-<p>The origin quantity is found from the m mode of the js = 2 value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xuv</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mode</td><td>Poloidal mode number to be retained. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asym</td><td>Add stellarator asymmetric terms. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aed046e4607a3671eb9be0c2ef2a375eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aed046e4607a3671eb9be0c2ef2a375eb">&#9670;&nbsp;</a></span>fourier_round_trig()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine fourier::fourier_round_trig </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), intent(inout)&#160;</td>
-          <td class="paramname"><em>cosi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(inout)&#160;</td>
-          <td class="paramname"><em>sini</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Round trig values to whole number for near numbers. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">cosi</td><td>Cosine value to round. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">sini</td><td>Sine value to round. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a27f5162fff4e2bd12c4a1130eb4aac3e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a27f5162fff4e2bd12c4a1130eb4aac3e">&#9670;&nbsp;</a></span>fourier_toijsp_2d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_toijsp_2d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>dflag</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Fourier transform a 2D quantity to real space. </p>
-<p>Works by reshaping to a 3D array then passing to the normal 3D version.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xmn</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xuv</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dflag</td><td>Derivative and sum control flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a077b192acbab552a945f1382c85ca9fc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a077b192acbab552a945f1382c85ca9fc">&#9670;&nbsp;</a></span>fourier_toijsp_3d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine fourier::fourier_toijsp_3d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>dflag</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert a quantity from fourier to real space in parallel. </p>
-<p>This subroutine moves a quantity to real space by summing over its Fourier harmonics. If the <a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">f_du</a> flag is set take the poloidal derivative. If the <a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">f_dv</a> flag is set take the toroidal derivative. If the f_sum flag is set add the real quanity to the previous value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xmn</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xuv</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dflag</td><td>Derivative and sum control flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1624922e688e9d0d4dc3817e96dd75ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1624922e688e9d0d4dc3817e96dd75ae">&#9670;&nbsp;</a></span>fourier_tomnsp_2d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_tomnsp_2d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Fourier transform a 2D quantity to fourier space. </p>
-<p>Works by reshaping to a 3D array then passing to the normal 3D version. Have the 3D function call the 2D function for each slice.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xmn</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af669d2453ff1041cfbcccae55bad9f7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af669d2453ff1041cfbcccae55bad9f7b">&#9670;&nbsp;</a></span>fourier_tomnsp_2d_pest()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_tomnsp_2d_pest </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>lambda</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>dup</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Fourier transform a 2D quantity to fourier space. </p>
-<p>Works by reshaping to a 3D array then passing to the normal 3D version. Have the 3D function call the 2D function for each slice.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xmn</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lambda</td><td>Stellarator symmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dupdu</td><td>Stellarator asymmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asym</td><td>Add stellarator asymmetric terms. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acac8a2289d22906b1e06baed62d550af"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acac8a2289d22906b1e06baed62d550af">&#9670;&nbsp;</a></span>fourier_tomnsp_2d_u()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_tomnsp_2d_u </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sum over the poloidal part. </p>
-<p>Pest transforms use the same sum over v but different sums over u. To encourage code reuse break the u and v sums into separate methods. This version uses the regular poloidal sum.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Fourier space quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9cb9afaad547575a84000f0b4d2e8e9c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9cb9afaad547575a84000f0b4d2e8e9c">&#9670;&nbsp;</a></span>fourier_tomnsp_2d_u_pest()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_tomnsp_2d_u_pest </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>lambda</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>dupdu</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sum over the poloidal part. </p>
-<p>Pest transforms use the same sum over v but different sums over u. To encourage code reuse break the u and v sums into separate methods. This version uses the lambda poloidal sum.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lmns</td><td>Stellarator symmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lmnc</td><td>Stellarator asymmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asym</td><td>Add stellarator asymmetric terms. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9cab14517df7e98ba1340143b44acb6f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9cab14517df7e98ba1340143b44acb6f">&#9670;&nbsp;</a></span>fourier_tomnsp_2d_v()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine fourier::fourier_tomnsp_2d_v </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sum over toroidal angle. </p>
-<p>Pest transforms use the same sum over v but different sums over u. To encourage code reuse break the u and v sums into separate methods. This impliments the common toroidal sum.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xmn</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a5ac68c96514704e40ab8b27470b4cf21">&#9670;&nbsp;</a></span>fourier_tomnsp_3d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine fourier::fourier_tomnsp_3d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert a quantity from real to fourier space in parallel. </p>
-<p>This subroutine moves a 3D quantity to fourier space by summing over its real represenetation for each surface. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacefourier.html#a1624922e688e9d0d4dc3817e96dd75ae" title="Fourier transform a 2D quantity to fourier space.">fourier_tomnsp_2d</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xmn</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a500f54a6328d5c7e34a891871425e8db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a500f54a6328d5c7e34a891871425e8db">&#9670;&nbsp;</a></span>fourier_tomnsp_3d_pest()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine fourier::fourier_tomnsp_3d_pest </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>xuv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>lmns</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>lmnc</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert a quantity from real to fourier space in pest coordinates. </p>
-<p>This subroutine moves a 3D quantity to fourier space by summing over its real represenetation for each surface. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacefourier.html#af669d2453ff1041cfbcccae55bad9f7b" title="Fourier transform a 2D quantity to fourier space.">fourier_tomnsp_2d_pest</a>.</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xuv</td><td>Real space quantity. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xmn</td><td>Fourier space quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lmns</td><td>Stellarator symmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lmnc</td><td>Stellarator asymmetric lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asym</td><td>Add stellarator asymmetric terms. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4331822c74c9060f004e2cc2186a058f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4331822c74c9060f004e2cc2186a058f">&#9670;&nbsp;</a></span>test_fourier()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">logical function fourier::test_fourier</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Test fourier routines. </p>
-<p>This tests the routines by fourier transforming form flux to real space then back again. </p>
-
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">functions Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This module containes functions used by the profiles.  
-<a href="namespacefunctions.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ac12f372c3f87a33cef53253787547dfa"><td class="memItemLeft" align="right" valign="top">real(rprec) pure function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefunctions.html#ac12f372c3f87a33cef53253787547dfa">two_power</a> (x, b)</td></tr>
-<tr class="memdesc:ac12f372c3f87a33cef53253787547dfa"><td class="mdescLeft">&#160;</td><td class="mdescRight">A two power profile.  <a href="namespacefunctions.html#ac12f372c3f87a33cef53253787547dfa">More...</a><br /></td></tr>
-<tr class="separator:ac12f372c3f87a33cef53253787547dfa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a55f92753ee82d0cb0e6622462022debf"><td class="memItemLeft" align="right" valign="top">real(rprec) pure function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefunctions.html#a55f92753ee82d0cb0e6622462022debf">two_power_gs</a> (x, b)</td></tr>
-<tr class="memdesc:a55f92753ee82d0cb0e6622462022debf"><td class="mdescLeft">&#160;</td><td class="mdescRight">A two power profile with added guassian peaks.  <a href="namespacefunctions.html#a55f92753ee82d0cb0e6622462022debf">More...</a><br /></td></tr>
-<tr class="separator:a55f92753ee82d0cb0e6622462022debf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d779bbabde8a586a2325f3292570d31"><td class="memItemLeft" align="right" valign="top">real(rprec) pure function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefunctions.html#a1d779bbabde8a586a2325f3292570d31">guassian</a> (x, b)</td></tr>
-<tr class="memdesc:a1d779bbabde8a586a2325f3292570d31"><td class="mdescLeft">&#160;</td><td class="mdescRight">A profile with a single guassian peak.  <a href="namespacefunctions.html#a1d779bbabde8a586a2325f3292570d31">More...</a><br /></td></tr>
-<tr class="separator:a1d779bbabde8a586a2325f3292570d31"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e74db6c7b9d805d9ebae01445c6a146"><td class="memItemLeft" align="right" valign="top">real(rprec) pure function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefunctions.html#a1e74db6c7b9d805d9ebae01445c6a146">guassian_int</a> (x, b)</td></tr>
-<tr class="memdesc:a1e74db6c7b9d805d9ebae01445c6a146"><td class="mdescLeft">&#160;</td><td class="mdescRight">A profile with a integrated single guassian peak.  <a href="namespacefunctions.html#a1e74db6c7b9d805d9ebae01445c6a146">More...</a><br /></td></tr>
-<tr class="separator:a1e74db6c7b9d805d9ebae01445c6a146"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4b77cadc047047e5d4ad957eef187b7d"><td class="memItemLeft" align="right" valign="top">logical function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacefunctions.html#a4b77cadc047047e5d4ad957eef187b7d">function_test</a> ()</td></tr>
-<tr class="memdesc:a4b77cadc047047e5d4ad957eef187b7d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Profile unit test function.  <a href="namespacefunctions.html#a4b77cadc047047e5d4ad957eef187b7d">More...</a><br /></td></tr>
-<tr class="separator:a4b77cadc047047e5d4ad957eef187b7d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This module containes functions used by the profiles. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a4b77cadc047047e5d4ad957eef187b7d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4b77cadc047047e5d4ad957eef187b7d">&#9670;&nbsp;</a></span>function_test()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">logical function, public functions::function_test</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Profile unit test function. </p>
-<p>This runs the associated unit tests and returns the result.</p>
-<dl class="section return"><dt>Returns</dt><dd>True if the tests pass and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a1d779bbabde8a586a2325f3292570d31"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d779bbabde8a586a2325f3292570d31">&#9670;&nbsp;</a></span>guassian()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real(rprec) pure function functions::guassian </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(0:20), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A profile with a single guassian peak. </p>
-<p>This defines a profile with a single guassian peak.</p>
-<p>b(0)*Exp(-(x - b(1))/b(2)) ** 2 (1)</p>
-<p>b(0) controls the amplitude. b(1) controls the mean. b(2) controls the width.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>Point to evaluate function from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of profile parameters. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The function evaluated at x. </dd></dl>
-
-</div>
-</div>
-<a id="a1e74db6c7b9d805d9ebae01445c6a146"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e74db6c7b9d805d9ebae01445c6a146">&#9670;&nbsp;</a></span>guassian_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real(rprec) pure function functions::guassian_int </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(0:20), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A profile with a integrated single guassian peak. </p>
-<p>This defines a profile with a with an integarted single guassian peak.</p>
-<p>Sqrt(2Pi)/2*b(0)*b(1)*(Erf(b(1)/b(2)) - Erf((b(1) - x)/b(2))) (1)</p>
-<p>b(0) controls the amplitude. b(1) controls the mean. b(2) controls the width.</p>
-<dl class="section note"><dt>Note</dt><dd>Fortran 90 does not have a built in Error function must use the C function instead.</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>Point to evaluate function from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of profile parameters. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The function evaluated at x. </dd></dl>
-
-</div>
-</div>
-<a id="ac12f372c3f87a33cef53253787547dfa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac12f372c3f87a33cef53253787547dfa">&#9670;&nbsp;</a></span>two_power()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real(rprec) pure function, public functions::two_power </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(0:20), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A two power profile. </p>
-<p>A two power profiles is defined using 3 parameters.</p>
-<p>b(0) * (1.0 - x ** b(1)) ** b(2) (1)</p>
-<p>b(0) controls the profile amplitude. b(1) controls the profile width. b(2) controls the profile tail.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>Point to evaluate function from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of profile parameters. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The function evaluated at x. </dd></dl>
-
-</div>
-</div>
-<a id="a55f92753ee82d0cb0e6622462022debf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a55f92753ee82d0cb0e6622462022debf">&#9670;&nbsp;</a></span>two_power_gs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real(rprec) pure function, public functions::two_power_gs </td>
-          <td>(</td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(0:20), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>A two power profile with added guassian peaks. </p>
-<p>The power profile is defined as <a class="el" href="namespacefunctions.html#ac12f372c3f87a33cef53253787547dfa">functions::two_power</a>. Then up to 9 additional guassians peaks can be added.</p>
-<p>two_power(x)*(1 + Sum[b(i)*Exp(-(x - b(i+1))/b(i+2)) ** 2]) (1)</p>
-<p>Parameters beyond the first three control the additional guassians. b(i) controls the amplitude. b(i+1) controls the mean. b(i+2) controls the width.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>Point to evaluate function from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of profile parameters. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#nested-classes">Data Types</a> &#124;
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-
-<p>Defines the base class of the type guassian_process_class. The <a class="el" href="namespaceguassian__process.html" title="Defines the base class of the type guassian_process_class. The guassian_process contains code to comp...">guassian_process</a> contains code to compuet guassian process profiles.  
-<a href="namespaceguassian__process.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a gaussian process.  <a href="structguassian__process_1_1gaussp__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer to a gaussian process object. Used for creating arrays of gaussian process pointers. This is needed because fortran does not allow arrays of pointers directly.  <a href="structguassian__process_1_1gaussp__class__pointer.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ac3d674cdda094bc99fb1d665b60be709"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#ac3d674cdda094bc99fb1d665b60be709">gaussp_construct</a> (a_model, n_signals, gaussp_type, profile_index, vrnc, tolerance, cholesky_fac)</td></tr>
-<tr class="memdesc:ac3d674cdda094bc99fb1d665b60be709"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>.  <a href="namespaceguassian__process.html#ac3d674cdda094bc99fb1d665b60be709">More...</a><br /></td></tr>
-<tr class="separator:ac3d674cdda094bc99fb1d665b60be709"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0524a61b6dddfa5046800c10d3f5d94d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#a0524a61b6dddfa5046800c10d3f5d94d">gaussp_destruct</a> (this)</td></tr>
-<tr class="memdesc:a0524a61b6dddfa5046800c10d3f5d94d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> object.  <a href="namespaceguassian__process.html#a0524a61b6dddfa5046800c10d3f5d94d">More...</a><br /></td></tr>
-<tr class="separator:a0524a61b6dddfa5046800c10d3f5d94d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad950f65ab28e5de3b228b982eef4c8a3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#ad950f65ab28e5de3b228b982eef4c8a3">gaussp_set_signal</a> (this, signal, index)</td></tr>
-<tr class="memdesc:ad950f65ab28e5de3b228b982eef4c8a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the object and coefficient for an index.  <a href="namespaceguassian__process.html#ad950f65ab28e5de3b228b982eef4c8a3">More...</a><br /></td></tr>
-<tr class="separator:ad950f65ab28e5de3b228b982eef4c8a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#ac4ec9a85cfdf6daf0f4f2d24f6dd374f">gaussp_set_profile</a> (this, a_model)</td></tr>
-<tr class="memdesc:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the object and coefficient for an index.  <a href="namespaceguassian__process.html#ac4ec9a85cfdf6daf0f4f2d24f6dd374f">More...</a><br /></td></tr>
-<tr class="separator:ac4ec9a85cfdf6daf0f4f2d24f6dd374f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9dab53aec7835ca01fa0c3d3f5accc54"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceguassian__process.html#a9dab53aec7835ca01fa0c3d3f5accc54">gaussp_get_evidence</a> (this, a_model)</td></tr>
-<tr class="memdesc:a9dab53aec7835ca01fa0c3d3f5accc54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the evidence.  <a href="namespaceguassian__process.html#a9dab53aec7835ca01fa0c3d3f5accc54">More...</a><br /></td></tr>
-<tr class="separator:a9dab53aec7835ca01fa0c3d3f5accc54"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type guassian_process_class. The <a class="el" href="namespaceguassian__process.html" title="Defines the base class of the type guassian_process_class. The guassian_process contains code to comp...">guassian_process</a> contains code to compuet guassian process profiles. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ac3d674cdda094bc99fb1d665b60be709"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac3d674cdda094bc99fb1d665b60be709">&#9670;&nbsp;</a></span>gaussp_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>) function, pointer guassian_process::gaussp_construct </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n_signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>gaussp_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>profile_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:)&#160;</td>
-          <td class="paramname"><em>vrnc</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec)&#160;</td>
-          <td class="paramname"><em>tolerance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec)&#160;</td>
-          <td class="paramname"><em>cholesky_fac</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> object. This just allocates the <a class="el" href="structguassian__process_1_1gaussp__class.html#a46475eab59a1ddb4a728c12c28e1408f">gaussp_class::signals</a>, gaussp_class::a array, and matrixices for the GP computataion. The indices of these arrays are set by <a class="el" href="namespaceguassian__process.html#ad950f65ab28e5de3b228b982eef4c8a3">gaussp_set_signal</a>, and the matrices are calculated in gaussp_get_modeled_signal</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="structmodel_1_1model__class.html">model::model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n_signals</td><td>Number of signals in this gaussian process. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">gaussp_type</td><td>The type of profile modeled by the gaussian process. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">profile_index</td><td>Index of the profile of the sxrem profile. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vrnc</td><td>Variance values for the hyper parameters. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tolerance</td><td>Convergence value to maximize the log evidence. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">choleskey_fac</td><td>Value added to diagnoal element to ensure K is PSD. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> object. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000003">Todo:</a></b></dt><dd>FIXME: The guassian process kernels should know the correct ranges. Query those instead. For now set all to infinity. </dd></dl>
-
-</div>
-</div>
-<a id="a0524a61b6dddfa5046800c10d3f5d94d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0524a61b6dddfa5046800c10d3f5d94d">&#9670;&nbsp;</a></span>gaussp_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine guassian_process::gaussp_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>The destructors of the signals in the signal array are not called her because the gaussian process signals do not own the memory for those signals. </dd></dl>
-
-</div>
-</div>
-<a id="a9dab53aec7835ca01fa0c3d3f5accc54"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9dab53aec7835ca01fa0c3d3f5accc54">&#9670;&nbsp;</a></span>gaussp_get_evidence()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function guassian_process::gaussp_get_evidence </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the evidence. </p>
-<p>This method finds a gaussian process evidence. The matrices computed can be later used to set the profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The log evidence for the current hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="ac4ec9a85cfdf6daf0f4f2d24f6dd374f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac4ec9a85cfdf6daf0f4f2d24f6dd374f">&#9670;&nbsp;</a></span>gaussp_set_profile()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine guassian_process::gaussp_set_profile </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the object and coefficient for an index. </p>
-<p>This method uses a gaussian process to set a model using the signals pointed in the <a class="el" href="structguassian__process_1_1gaussp__class.html#a46475eab59a1ddb4a728c12c28e1408f">gaussp_class::signals</a> array. Hyper parameters are determined by maximizing the evidence.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad950f65ab28e5de3b228b982eef4c8a3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad950f65ab28e5de3b228b982eef4c8a3">&#9670;&nbsp;</a></span>gaussp_set_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine guassian_process::gaussp_set_signal </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the object and coefficient for an index. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structguassian__process_1_1gaussp__class.html">gaussp_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a</td><td>A weight for the signal </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>The index to place the gaussp <a class="el" href="namespacesignal.html">signal</a>. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<p>Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path.  
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-<tr class="separator:a05378176ed62eebf5da06dbde4bc5c3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad7ce79113b9baab011876b3648dd5e87"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintegration__path.html#ad7ce79113b9baab011876b3648dd5e87">path_construct_vertex</a> (position)</td></tr>
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-<tr class="separator:ad7ce79113b9baab011876b3648dd5e87"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1a576a43d6cd126be6b55984c5839c1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a18a315d704f2d54a181edd6d3580eaa6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a11358c40f231f1195a0dbca2e97a23a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integrate along the paths.  <a href="namespaceintegration__path.html#a11358c40f231f1195a0dbca2e97a23a2">More...</a><br /></td></tr>
-<tr class="separator:a11358c40f231f1195a0dbca2e97a23a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a0116e5343b00d2f0d9e97296f5842941"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a763cdfae07b65b17f884176c5dd1aca1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line integrate between to points.  <a href="namespaceintegration__path.html#a763cdfae07b65b17f884176c5dd1aca1">More...</a><br /></td></tr>
-<tr class="separator:a763cdfae07b65b17f884176c5dd1aca1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintegration__path.html#a0a8b8a82b5d3ad4e906b99f2cee20e41">integration_path_hp_gleg_integrate_path</a> (this, context, vertex1, vertex2)</td></tr>
-<tr class="memdesc:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line integrate between to points.  <a href="namespaceintegration__path.html#a0a8b8a82b5d3ad4e906b99f2cee20e41">More...</a><br /></td></tr>
-<tr class="separator:a0a8b8a82b5d3ad4e906b99f2cee20e41"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ac27cbd9f98748d9ca49a3c839d7bd5ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-Variables</h2></td></tr>
-<tr class="memitem:a9dfc45b722b2dd721baa766474005c98"><td class="memItemLeft" align="right" valign="top"><a id="a9dfc45b722b2dd721baa766474005c98"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintegration__path.html#a9dfc45b722b2dd721baa766474005c98">path_default_dx</a> = 0.0025</td></tr>
-<tr class="memdesc:a9dfc45b722b2dd721baa766474005c98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default step size of the integration. <br /></td></tr>
-<tr class="separator:a9dfc45b722b2dd721baa766474005c98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a4ca8b7adf42fc4501643a52cffc900fe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4ca8b7adf42fc4501643a52cffc900fe">&#9670;&nbsp;</a></span>integration_path_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>) function, pointer integration_path::integration_path_construct</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct an <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </p>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a6e7740c672fb25192214e2c8232a8cb1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6e7740c672fb25192214e2c8232a8cb1">&#9670;&nbsp;</a></span>integration_path_gleg_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a>) function, pointer integration_path::integration_path_gleg_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>npoints</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct an <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">npoints</td><td>Number of quadrature points to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a1a576a43d6cd126be6b55984c5839c1b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1a576a43d6cd126be6b55984c5839c1b">&#9670;&nbsp;</a></span>integration_path_gleg_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine integration_path::integration_path_gleg_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a763cdfae07b65b17f884176c5dd1aca1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a763cdfae07b65b17f884176c5dd1aca1">&#9670;&nbsp;</a></span>integration_path_gleg_integrate_path()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function integration_path::integration_path_gleg_integrate_path </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1integration__path__gleg__class.html">integration_path_gleg_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path__context_1_1integration__path__context__class.html">integration_path_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Line integrate between to points. </p>
-<p>This chooses the specific integration method.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>In instance of a <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex1</td><td>Starting point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex2</td><td>Ending point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The path integrated value between the vertex1 and vertex2. </dd></dl>
-
-</div>
-</div>
-<a id="a0a8b8a82b5d3ad4e906b99f2cee20e41"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0a8b8a82b5d3ad4e906b99f2cee20e41">&#9670;&nbsp;</a></span>integration_path_hp_gleg_integrate_path()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function integration_path::integration_path_hp_gleg_integrate_path </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1integration__path__hp__glep__class.html">integration_path_hp_glep_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path__context_1_1integration__path__context__class.html">integration_path_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Line integrate between to points. </p>
-<p>This chooses the specific integration method.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>In instance of a <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex1</td><td>Starting point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex2</td><td>Ending point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The path integrated value between the vertex1 and vertex2. </dd></dl>
-
-</div>
-</div>
-<a id="a05378176ed62eebf5da06dbde4bc5c3b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05378176ed62eebf5da06dbde4bc5c3b">&#9670;&nbsp;</a></span>integration_path_hp_glep_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintegration__path_1_1integration__path__hp__glep__class.html">integration_path_hp_glep_class</a>) function, pointer integration_path::integration_path_hp_glep_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>npoints</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct an <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">npoints</td><td>Number of quadrature points to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the interval. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a0116e5343b00d2f0d9e97296f5842941"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0116e5343b00d2f0d9e97296f5842941">&#9670;&nbsp;</a></span>integration_path_integrate_path()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function integration_path::integration_path_integrate_path </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path__context_1_1integration__path__context__class.html">integration_path_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>vertex2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Line integrate between to points. </p>
-<p>This chooses the specific integration method.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>In instance of a <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex1</td><td>Starting point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vertex2</td><td>Ending point. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a11358c40f231f1195a0dbca2e97a23a2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a11358c40f231f1195a0dbca2e97a23a2">&#9670;&nbsp;</a></span>integration_path_integrate_paths()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">recursive real (rprec) function integration_path::integration_path_integrate_paths </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path__context_1_1integration__path__context__class.html">integration_path_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Integrate along the paths. </p>
-<p>Recursively runs through the next vertex to find the last vertex. Once the last vertex is found, integrate alone that path. The integrand is proveded by means of call back function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>In instance of a <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">path</td><td>Starting <a class="el" href="classvertex.html">vertex</a> to of the path to integrate. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The total integrated path to the end. </dd></dl>
-
-</div>
-</div>
-<a id="a1d15ff606c331a4dd73796f054a6dcc8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d15ff606c331a4dd73796f054a6dcc8">&#9670;&nbsp;</a></span>make_integrator()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>) function, pointer integration_path::make_integrator </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>method</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>npoints</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Factory method to construct a path integrator using a method. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">method</td><td>Integartion method to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">npoints</td><td>Number of quadrature points to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the interval. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a3456f715eb7b6ddb91158b839e7f0bec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3456f715eb7b6ddb91158b839e7f0bec">&#9670;&nbsp;</a></span>path_append_vertex()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">recursive subroutine integration_path::path_append_vertex </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>position</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Append a <a class="el" href="classvertex.html">vertex</a> to a path. </p>
-<p>Recursively runs through the next vertex to find the last vertex. Once the last vertex is found, a new vertex is allocated and appended to the path. This allow works as a constructer and allocates the first vertex if needed.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>Vertex to append path to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Cartesian position of the vertex object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad7ce79113b9baab011876b3648dd5e87"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad7ce79113b9baab011876b3648dd5e87">&#9670;&nbsp;</a></span>path_construct_vertex()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>) function, pointer integration_path::path_construct_vertex </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>position</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a single <a class="el" href="classvertex.html">vertex</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="classvertex.html">vertex</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Cartesian position of the vertex object. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="classvertex.html">vertex</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a18a315d704f2d54a181edd6d3580eaa6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a18a315d704f2d54a181edd6d3580eaa6">&#9670;&nbsp;</a></span>path_destruct_vertex()</h2>
-
-<div class="memitem">
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-          <td class="memname">recursive subroutine integration_path::path_destruct_vertex </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="classvertex.html">vertex</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="classvertex.html">vertex</a> object. This recursively deconstructed the next vertex until the last in the linked list is found.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="classvertex.html">vertex</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a74fc9aeb6e4fe6fa26386076183db8bc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a74fc9aeb6e4fe6fa26386076183db8bc">&#9670;&nbsp;</a></span>path_get_gaussqad_weights()</h2>
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-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">subroutine integration_path::path_get_gaussqad_weights </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>a</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>b</em>, </td>
-        </tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>abscissas</em>, </td>
-        </tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>weights</em>&#160;</td>
-        </tr>
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-          <td>)</td>
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-</div><div class="memdoc">
-
-<p>@breif Calculate the weights and abscissas for Gauss-Legendre integration. </p>
-<p>This suprogram calculated the weights and abscissas for Gauss-Legendre integration. The subroutine is adapted from NIMROD which was adapted from Numerical Recipies, 2ed., Cambridge Press.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a</td><td>Start point for integration. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>End point for integration. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">abscissas</td><td>Array of abscissas. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">weights</td><td>Array of weights. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a id="ac27cbd9f98748d9ca49a3c839d7bd5ad"></a>
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-          <td class="memname">logical function integration_path::path_test</td>
-        </tr>
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-
-<p>Path unit test function. </p>
-<p>This runs the associated unit tests and returns the result.</p>
-<dl class="section return"><dt>Returns</dt><dd>True if the tests pass and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="ae9c3a8440b62efb75cf299a26555651e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae9c3a8440b62efb75cf299a26555651e">&#9670;&nbsp;</a></span>search_paths()</h2>
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-<div class="memitem">
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-          <td class="memname">recursive real (rprec) function, dimension(3) integration_path::search_paths </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintegration__path_1_1vertex.html">vertex</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path__context_1_1search__path__context__class.html">search_path_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>found</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Search along the path. </p>
-<p>Recursively runs through the next vertex to find the last vertex. Once the last vertex is found, a new vertex is allocated and appended to the path. The integrand is proveded by means of call back function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">path</td><td>Starting vertex to begin search. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">found</td><td>Signals if the condition was met. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The vertex position along the path where the search condition was found. </dd></dl>
-
-</div>
-</div>
-<a id="abdecb3a86227ac22524b234161ee4d86"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abdecb3a86227ac22524b234161ee4d86">&#9670;&nbsp;</a></span>test_search_function()</h2>
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-<div class="memitem">
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-          <td class="memname">logical function integration_path::test_search_function </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1test__search__context.html">test_search_context</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>xcart1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>xcart2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Call back function to test the search. </p>
-<p>Returns true if the positions bound the loaction we are looking for.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>Generic object that contains data for the integration function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcart1</td><td>Lower test point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcart2</td><td>Higher test point. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-
-<p>Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path.  
-<a href="namespaceintegration__path__context.html#details">More...</a></p>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integration context object interface.  <a href="structintegration__path__context_1_1integration__path__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceintegration__path__context_1_1integration__function.html">integration_function</a></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
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-<p>Implements interferometry/polarimetry diagnostic. Defines the base class of the type <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>.  
-<a href="namespaceintpol.html#details">More...</a></p>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure to hold all memory needed to be sent to the guassian process callback function for signal.  <a href="structintpol_1_1intpol__gp__int__context__s.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structintpol_1_1intpol__gp__pol__context__s.html">intpol_gp_pol_context_s</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure to hold all memory needed to be sent to the guassian process callback function for signal.  <a href="structintpol_1_1intpol__gp__pol__context__s.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structintpol_1_1intpol__gp__int__context__x.html">intpol_gp_int_context_x</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure to hold all memory needed to be sent to the guassian process callback function for position.  <a href="structintpol_1_1intpol__gp__int__context__x.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structintpol_1_1intpol__gp__pol__context__x.html">intpol_gp_pol_context_x</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure to hold all memory needed to be sent to the guassian process callback function for position.  <a href="structintpol_1_1intpol__gp__pol__context__x.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7d7a70b2213491dde2b37344cd2844a0"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a7d7a70b2213491dde2b37344cd2844a0">intpol_construct</a> (chord_paths)</td></tr>
-<tr class="memdesc:a7d7a70b2213491dde2b37344cd2844a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to get the guassian process kernel values.  <a href="namespaceintpol.html#a7d7a70b2213491dde2b37344cd2844a0">More...</a><br /></td></tr>
-<tr class="separator:a7d7a70b2213491dde2b37344cd2844a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae083fb37be9e68c3e25edac00d37bac7"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#ae083fb37be9e68c3e25edac00d37bac7">intpol_pol_construct</a> (wavelength, in_degrees, chord_paths)</td></tr>
-<tr class="memdesc:ae083fb37be9e68c3e25edac00d37bac7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object representing a polarimetry diagnostic.  <a href="namespaceintpol.html#ae083fb37be9e68c3e25edac00d37bac7">More...</a><br /></td></tr>
-<tr class="separator:ae083fb37be9e68c3e25edac00d37bac7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a20044330381a266a6a55215e0f65b24f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a20044330381a266a6a55215e0f65b24f">intpol_destruct</a> (this)</td></tr>
-<tr class="memdesc:a20044330381a266a6a55215e0f65b24f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.  <a href="namespaceintpol.html#a20044330381a266a6a55215e0f65b24f">More...</a><br /></td></tr>
-<tr class="separator:a20044330381a266a6a55215e0f65b24f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a998b2a7ca70fcdc226e8c45acdc4ba65"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a998b2a7ca70fcdc226e8c45acdc4ba65">intpol_pol_destruct</a> (this)</td></tr>
-<tr class="memdesc:a998b2a7ca70fcdc226e8c45acdc4ba65"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.  <a href="namespaceintpol.html#a998b2a7ca70fcdc226e8c45acdc4ba65">More...</a><br /></td></tr>
-<tr class="separator:a998b2a7ca70fcdc226e8c45acdc4ba65"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1be34f1fc73e150ac661a2b2ad2d1d29"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a1be34f1fc73e150ac661a2b2ad2d1d29">intpol_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a1be34f1fc73e150ac661a2b2ad2d1d29"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the interferometry signal.  <a href="namespaceintpol.html#a1be34f1fc73e150ac661a2b2ad2d1d29">More...</a><br /></td></tr>
-<tr class="separator:a1be34f1fc73e150ac661a2b2ad2d1d29"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26dc7766ba44bd2fa5880ae97b97c70b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a26dc7766ba44bd2fa5880ae97b97c70b">intpol_pol_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a26dc7766ba44bd2fa5880ae97b97c70b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the polarimetry signal.  <a href="namespaceintpol.html#a26dc7766ba44bd2fa5880ae97b97c70b">More...</a><br /></td></tr>
-<tr class="separator:a26dc7766ba44bd2fa5880ae97b97c70b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a49a4d4cd2b99c3e29f3a1e394a263ea5"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a49a4d4cd2b99c3e29f3a1e394a263ea5">intpol_get_type</a> (this)</td></tr>
-<tr class="memdesc:a49a4d4cd2b99c3e29f3a1e394a263ea5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the intpol type.  <a href="namespaceintpol.html#a49a4d4cd2b99c3e29f3a1e394a263ea5">More...</a><br /></td></tr>
-<tr class="separator:a49a4d4cd2b99c3e29f3a1e394a263ea5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aae934c05061105070821c5bc51a022f1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#aae934c05061105070821c5bc51a022f1">intpol_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:aae934c05061105070821c5bc51a022f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an inteferometry signal and a position.  <a href="namespaceintpol.html#aae934c05061105070821c5bc51a022f1">More...</a><br /></td></tr>
-<tr class="separator:aae934c05061105070821c5bc51a022f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9bbd00974daa42c07ce8be5a30db7e0d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a9bbd00974daa42c07ce8be5a30db7e0d">intpol_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:a9bbd00974daa42c07ce8be5a30db7e0d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an inteferometry signal and a signal.  <a href="namespaceintpol.html#a9bbd00974daa42c07ce8be5a30db7e0d">More...</a><br /></td></tr>
-<tr class="separator:a9bbd00974daa42c07ce8be5a30db7e0d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d4f2beb7ef68530032e37e7bb4ccc24"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a1d4f2beb7ef68530032e37e7bb4ccc24">intpol_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:a1d4f2beb7ef68530032e37e7bb4ccc24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a inteferometry signal and a cartesian position.  <a href="namespaceintpol.html#a1d4f2beb7ef68530032e37e7bb4ccc24">More...</a><br /></td></tr>
-<tr class="separator:a1d4f2beb7ef68530032e37e7bb4ccc24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a97511f36aba9f23a648d268d98ba4536"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a97511f36aba9f23a648d268d98ba4536">intpol_pol_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:a97511f36aba9f23a648d268d98ba4536"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an polarimetry signal and a position.  <a href="namespaceintpol.html#a97511f36aba9f23a648d268d98ba4536">More...</a><br /></td></tr>
-<tr class="separator:a97511f36aba9f23a648d268d98ba4536"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9cdcdc7cd704d7eff6070e861a920d9f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#a9cdcdc7cd704d7eff6070e861a920d9f">intpol_pol_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:a9cdcdc7cd704d7eff6070e861a920d9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for an polarimetry signal and a signal.  <a href="namespaceintpol.html#a9cdcdc7cd704d7eff6070e861a920d9f">More...</a><br /></td></tr>
-<tr class="separator:a9cdcdc7cd704d7eff6070e861a920d9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af99e2161a2c24f23f323d2a8e4937c04"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#af99e2161a2c24f23f323d2a8e4937c04">intpol_pol_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:af99e2161a2c24f23f323d2a8e4937c04"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a polarimetry signal and a cartesian position.  <a href="namespaceintpol.html#af99e2161a2c24f23f323d2a8e4937c04">More...</a><br /></td></tr>
-<tr class="separator:af99e2161a2c24f23f323d2a8e4937c04"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:aa3d638cb401be5eec5940b8618e80dde"><td class="memItemLeft" align="right" valign="top"><a id="aa3d638cb401be5eec5940b8618e80dde"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceintpol.html#aa3d638cb401be5eec5940b8618e80dde">intpol_polar_constant</a> = 2.62E-13_dp</td></tr>
-<tr class="memdesc:aa3d638cb401be5eec5940b8618e80dde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constant term for the polarimety. <br /></td></tr>
-<tr class="separator:aa3d638cb401be5eec5940b8618e80dde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Implements interferometry/polarimetry diagnostic. Defines the base class of the type <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a7d7a70b2213491dde2b37344cd2844a0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d7a70b2213491dde2b37344cd2844a0">&#9670;&nbsp;</a></span>intpol_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>) function, pointer intpol::intpol_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(:,:)&#160;</td>
-          <td class="paramname"><em>chord_paths</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interface to get the guassian process kernel values. </p>
-<p>Construct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object representing a interferometer diagnostic.</p>
-<p>Allocates memory and initializes a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">chord_paths</td><td>The nodes of a multi point segment integration path. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a20044330381a266a6a55215e0f65b24f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a20044330381a266a6a55215e0f65b24f">&#9670;&nbsp;</a></span>intpol_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine intpol::intpol_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aae934c05061105070821c5bc51a022f1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aae934c05061105070821c5bc51a022f1">&#9670;&nbsp;</a></span>intpol_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an inteferometry signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Density kernels are provided by model::model_get_gp_ne.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a9bbd00974daa42c07ce8be5a30db7e0d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9bbd00974daa42c07ce8be5a30db7e0d">&#9670;&nbsp;</a></span>intpol_get_gp_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an inteferometry signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. Calls back to the <a class="el" href="namespacesignal.html">signal</a> module to call the other signal. This is the first signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a1d4f2beb7ef68530032e37e7bb4ccc24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d4f2beb7ef68530032e37e7bb4ccc24">&#9670;&nbsp;</a></span>intpol_get_gp_x()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a inteferometry signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. This is the second signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a1be34f1fc73e150ac661a2b2ad2d1d29"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1be34f1fc73e150ac661a2b2ad2d1d29">&#9670;&nbsp;</a></span>intpol_get_modeled_signal()</h2>
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-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) intpol::intpol_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the interferometry signal. </p>
-<p>Calculates the modeled signal by integrating along the chord path. The integration function is provided by int_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a49a4d4cd2b99c3e29f3a1e394a263ea5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a49a4d4cd2b99c3e29f3a1e394a263ea5">&#9670;&nbsp;</a></span>intpol_get_type()</h2>
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-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function intpol::intpol_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the intpol type. </p>
-<p>Returns a description of the intpol type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the intpol type. </dd></dl>
-
-</div>
-</div>
-<a id="ae083fb37be9e68c3e25edac00d37bac7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae083fb37be9e68c3e25edac00d37bac7">&#9670;&nbsp;</a></span>intpol_pol_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>) function, pointer intpol::intpol_pol_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>wavelength</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:)&#160;</td>
-          <td class="paramname"><em>chord_paths</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object representing a polarimetry diagnostic. </p>
-<p>Allocates memory and initializes a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wavelength</td><td>Wavelength of the polarimetry beam. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Specifies if the sigals is degrees or radians. True specifies degree while false specifies radians. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">chord_paths</td><td>The nodes of a multi point segment integration path. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a998b2a7ca70fcdc226e8c45acdc4ba65"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a998b2a7ca70fcdc226e8c45acdc4ba65">&#9670;&nbsp;</a></span>intpol_pol_destruct()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine intpol::intpol_pol_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a97511f36aba9f23a648d268d98ba4536"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a97511f36aba9f23a648d268d98ba4536">&#9670;&nbsp;</a></span>intpol_pol_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_pol_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an polarimetry signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Density kernels are provided by model::model_get_gp_ne.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a9cdcdc7cd704d7eff6070e861a920d9f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9cdcdc7cd704d7eff6070e861a920d9f">&#9670;&nbsp;</a></span>intpol_pol_get_gp_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_pol_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for an polarimetry signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. Calls back to the <a class="el" href="namespacesignal.html">signal</a> module to call the other signal. This is the first signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="af99e2161a2c24f23f323d2a8e4937c04"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af99e2161a2c24f23f323d2a8e4937c04">&#9670;&nbsp;</a></span>intpol_pol_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function intpol::intpol_pol_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a polarimetry signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. This is the second signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a26dc7766ba44bd2fa5880ae97b97c70b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a26dc7766ba44bd2fa5880ae97b97c70b">&#9670;&nbsp;</a></span>intpol_pol_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) intpol::intpol_pol_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the polarimetry signal. </p>
-<p>Calculates the modeled signal by integrating along the chord path. The integration function is provided by @ ref pol_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structintpol_1_1intpol__pol__class.html">intpol_pol_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">ipch_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a 'ipch.' file. The file format for these files are documented in <a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a>.  
-<a href="namespaceipch__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a05690485f3045f26b7faea4309e7419e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceipch__dot.html#a05690485f3045f26b7faea4309e7419e">ipch_dot_read</a> (ipch_file, signals, signals_created, observed, sigma, weight, first_index, use_polarimetry)</td></tr>
-<tr class="memdesc:a05690485f3045f26b7faea4309e7419e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an interferometry/polarimetry diagnostic dot file.  <a href="namespaceipch__dot.html#a05690485f3045f26b7faea4309e7419e">More...</a><br /></td></tr>
-<tr class="separator:a05690485f3045f26b7faea4309e7419e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7f4f21c78db1016e3a4a141505d8b2c2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceipch__dot.html#a7f4f21c78db1016e3a4a141505d8b2c2">ipch_dot_parse_chord</a> (ipch_dot_file_ref, coordinate_type, chord_type, inDegrees, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:a7f4f21c78db1016e3a4a141505d8b2c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse interferometry/polarimetry diagnostic chord.  <a href="namespaceipch__dot.html#a7f4f21c78db1016e3a4a141505d8b2c2">More...</a><br /></td></tr>
-<tr class="separator:a7f4f21c78db1016e3a4a141505d8b2c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a 'ipch.' file. The file format for these files are documented in <a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a7f4f21c78db1016e3a4a141505d8b2c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7f4f21c78db1016e3a4a141505d8b2c2">&#9670;&nbsp;</a></span>ipch_dot_parse_chord()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine ipch_dot::ipch_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>ipch_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=1), intent(in)&#160;</td>
-          <td class="paramname"><em>chord_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>inDegrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse interferometry/polarimetry diagnostic chord. </p>
-<p>Parses a signle chord. Chords are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Starting point as three reals.</li>
-<li>Ending point as three reals.</li>
-</ul>
-<p>If the signal is a polarimetry chord, then also read a single real for the wavelength.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ipch_dot_file_ref</td><td>Name of the ipch. file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">chord_type</td><td>Specifies if the cord is a 'i'nterferometer or 'p'olarimetry. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inDegrees</td><td>Specifies if signal measures degrees or radians. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index or the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a05690485f3045f26b7faea4309e7419e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05690485f3045f26b7faea4309e7419e">&#9670;&nbsp;</a></span>ipch_dot_read()</h2>
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-<div class="memitem">
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-      <table class="memname">
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-          <td class="memname">subroutine ipch_dot::ipch_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>ipch_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>use_polarimetry</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an interferometry/polarimetry diagnostic dot file. </p>
-<p>Parses the structure of a dignostic dot file and constructs a <a class="el" href="namespaceintpol.html">intpol</a> object. Each chord is parsed by <a class="el" href="namespaceipch__dot.html#a7f4f21c78db1016e3a4a141505d8b2c2">ipch_dot_parse_chord</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ipch_file</td><td>Name of the ipch. file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">use_polarimetry</td><td>True is a polarimetry signal was constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<tr class="memdesc:a39f16f6e74455d09fed7c729e4e53fcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Major radius. <br /></td></tr>
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-<tr class="memdesc:a3026e5935687f4a23b3260400a2c686b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial toroidal flux derivative. <br /></td></tr>
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-<tr class="memdesc:ab8124f0f12fea9a183dbfc6001ad9651"><td class="mdescLeft">&#160;</td><td class="mdescRight">Volume of a radial grid surface. <br /></td></tr>
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-<tr class="memdesc:a24c8539d3e62a5cf926144ce7722c53e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier transform object. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains fix parameters related to the computational grids. </p>
-</div></div><!-- contents -->
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-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
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-  <div class="headertitle">
-<div class="title">limiter Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Defines the base class of the type <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>.  
-<a href="namespacelimiter.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a limiter signal.  <a href="structlimiter_1_1limiter__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:aa44dc38dfbefb7c21d280e0ec4ed74ff"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#aa44dc38dfbefb7c21d280e0ec4ed74ff">limiter_destruct</a> (this)</td></tr>
-<tr class="memdesc:aa44dc38dfbefb7c21d280e0ec4ed74ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> object.  <a href="namespacelimiter.html#aa44dc38dfbefb7c21d280e0ec4ed74ff">More...</a><br /></td></tr>
-<tr class="separator:aa44dc38dfbefb7c21d280e0ec4ed74ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45aa0ac5949f3a566bad8db3bb191df1"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a45aa0ac5949f3a566bad8db3bb191df1">limiter_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a45aa0ac5949f3a566bad8db3bb191df1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespacelimiter.html#a45aa0ac5949f3a566bad8db3bb191df1">More...</a><br /></td></tr>
-<tr class="separator:a45aa0ac5949f3a566bad8db3bb191df1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8e32e4e8c7d4729044dad84771320a39"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a8e32e4e8c7d4729044dad84771320a39">limiter_get_type</a> (this)</td></tr>
-<tr class="memdesc:a8e32e4e8c7d4729044dad84771320a39"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the limiter type.  <a href="namespacelimiter.html#a8e32e4e8c7d4729044dad84771320a39">More...</a><br /></td></tr>
-<tr class="separator:a8e32e4e8c7d4729044dad84771320a39"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b1f11eb0fd97b734d63364f9a61a102"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102">limiter_get_header</a> (this, header)</td></tr>
-<tr class="memdesc:a3b1f11eb0fd97b734d63364f9a61a102"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102">More...</a><br /></td></tr>
-<tr class="separator:a3b1f11eb0fd97b734d63364f9a61a102"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61ed94cda09b81ca3d693d0b8a340310"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter.html#a61ed94cda09b81ca3d693d0b8a340310">limiter_get_max_fval</a> (this, num_theta, phi_index, r, z, rphiz_at_max)</td></tr>
-<tr class="memdesc:a61ed94cda09b81ca3d693d0b8a340310"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the maximum value of the limiter function.  <a href="namespacelimiter.html#a61ed94cda09b81ca3d693d0b8a340310">More...</a><br /></td></tr>
-<tr class="separator:a61ed94cda09b81ca3d693d0b8a340310"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>geometric</dd></dl>
-<dl class="section see"><dt>See also</dt><dd>limiter_iso_T </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aa44dc38dfbefb7c21d280e0ec4ed74ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa44dc38dfbefb7c21d280e0ec4ed74ff">&#9670;&nbsp;</a></span>limiter_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine limiter::limiter_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3b1f11eb0fd97b734d63364f9a61a102"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3b1f11eb0fd97b734d63364f9a61a102">&#9670;&nbsp;</a></span>limiter_get_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine limiter::limiter_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>Returns a description of the array indices for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">header</td><td>Buffer arrays to write header strings to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a61ed94cda09b81ca3d693d0b8a340310"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a61ed94cda09b81ca3d693d0b8a340310">&#9670;&nbsp;</a></span>limiter_get_max_fval()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function limiter::limiter_get_max_fval </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_theta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>phi_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(out)&#160;</td>
-          <td class="paramname"><em>rphiz_at_max</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the maximum value of the limiter function. </p>
-<p>This should be overwritten by a subclass method.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_theta</td><td>Number of points in the theta direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_index</td><td>Current phi index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>R positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>Z positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rphiz_at_max</td><td>R, Phi, Z position of the maximum function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The maximum value of the iso function. </dd></dl>
-
-</div>
-</div>
-<a id="a45aa0ac5949f3a566bad8db3bb191df1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a45aa0ac5949f3a566bad8db3bb191df1">&#9670;&nbsp;</a></span>limiter_get_modeled_signal()</h2>
-
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-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) limiter::limiter_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Calculates the modeled signal. </p>
-<p>If the limiter is defined by an iso function returns the value of limiter_get_modeled_iso_signal. Otherwise returns zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>If the limiter type is defined by an iso function, sigma value of limiter_get_modeled_iso_signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>If the limiter type is defined by an iso function, return the value of limiter_get_modeled_iso_signal. Otherwise returns zero. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Polygon limiters have not be implemented yet. </dd></dl>
-
-</div>
-</div>
-<a id="a8e32e4e8c7d4729044dad84771320a39"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8e32e4e8c7d4729044dad84771320a39">&#9670;&nbsp;</a></span>limiter_get_type()</h2>
-
-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function limiter::limiter_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the limiter type. </p>
-<p>Returns a description of the limiter type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the limiter type. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">limiter_grid Module Reference</div>  </div>
-</div><!--header-->
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-
-<p>Defines the base class of the type <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>.  
-<a href="namespacelimiter__grid.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a limiter signal.  <a href="structlimiter__grid_1_1limiter__grid__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1fe0dca7e422c5a64aa5e535fd0f845c"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__grid.html#a1fe0dca7e422c5a64aa5e535fd0f845c">limiter_grid_construct</a> (lgrid_file, on_edge)</td></tr>
-<tr class="memdesc:a1fe0dca7e422c5a64aa5e535fd0f845c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html" title="Base class representing a limiter signal.">limiter_grid_class</a>.  <a href="namespacelimiter__grid.html#a1fe0dca7e422c5a64aa5e535fd0f845c">More...</a><br /></td></tr>
-<tr class="separator:a1fe0dca7e422c5a64aa5e535fd0f845c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e2650f5959b58e6feb3e0c324969aea"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__grid.html#a9e2650f5959b58e6feb3e0c324969aea">limiter_grid_destruct</a> (this)</td></tr>
-<tr class="memdesc:a9e2650f5959b58e6feb3e0c324969aea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> object.  <a href="namespacelimiter__grid.html#a9e2650f5959b58e6feb3e0c324969aea">More...</a><br /></td></tr>
-<tr class="separator:a9e2650f5959b58e6feb3e0c324969aea"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae33cdb159cc818d474e966f2a6e685c7"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__grid.html#ae33cdb159cc818d474e966f2a6e685c7">limiter_grid_get_max_fval</a> (this, num_theta, phi_index, r, z, rphiz_at_max)</td></tr>
-<tr class="memdesc:ae33cdb159cc818d474e966f2a6e685c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the maximum value of the grid function.  <a href="namespacelimiter__grid.html#ae33cdb159cc818d474e966f2a6e685c7">More...</a><br /></td></tr>
-<tr class="separator:ae33cdb159cc818d474e966f2a6e685c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a810e388e4fd4e835269db5d0e0a1b738"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__grid.html#a810e388e4fd4e835269db5d0e0a1b738">limiter_grid_get_type</a> (this)</td></tr>
-<tr class="memdesc:a810e388e4fd4e835269db5d0e0a1b738"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the limiter grid type.  <a href="namespacelimiter__grid.html#a810e388e4fd4e835269db5d0e0a1b738">More...</a><br /></td></tr>
-<tr class="separator:a810e388e4fd4e835269db5d0e0a1b738"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>geometric </dd></dl>
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-<a id="a1fe0dca7e422c5a64aa5e535fd0f845c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1fe0dca7e422c5a64aa5e535fd0f845c">&#9670;&nbsp;</a></span>limiter_grid_construct()</h2>
-
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-          <td class="memname">class (<a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>) function, pointer limiter_grid::limiter_grid_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>lgrid_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>on_edge</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html" title="Base class representing a limiter signal.">limiter_grid_class</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> object from a netcdf file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">lgrid_file</td><td>Filename for the limiter grid netcdf file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">on_edge</td><td>Specifies if the edge should touch the limiter or not. If true, the reconstruction tries to have the limiter touch the limiter. If false, the edge will only just fall inside the limiter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a9e2650f5959b58e6feb3e0c324969aea">&#9670;&nbsp;</a></span>limiter_grid_destruct()</h2>
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-          <td class="memname">subroutine limiter_grid::limiter_grid_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae33cdb159cc818d474e966f2a6e685c7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae33cdb159cc818d474e966f2a6e685c7">&#9670;&nbsp;</a></span>limiter_grid_get_max_fval()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">real (rprec) function limiter_grid::limiter_grid_get_max_fval </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_theta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>phi_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(out)&#160;</td>
-          <td class="paramname"><em>rphiz_at_max</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the maximum value of the grid function. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A limiter_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_theta</td><td>Number of points in the theta direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_index</td><td>Current phi index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>R positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>Z positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rphiz_at_max</td><td>R, Phi, Z position of the maximum function. </td></tr>
-  </table>
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-<dl class="section return"><dt>Returns</dt><dd>The maximum value of the iso function. </dd></dl>
-
-</div>
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-<a id="a810e388e4fd4e835269db5d0e0a1b738"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a810e388e4fd4e835269db5d0e0a1b738">&#9670;&nbsp;</a></span>limiter_grid_get_type()</h2>
-
-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function limiter_grid::limiter_grid_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a>), intent(in)&#160;</td>
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-          <td></td>
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-
-<p>Gets a discription of the limiter grid type. </p>
-<p>Returns a description of the limiter type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the limiter type. </dd></dl>
-
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">limiter_iso_t Module Reference</div>  </div>
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-<div class="contents">
-
-<p>Defines the base class of the type limiter_iso.  
-<a href="namespacelimiter__iso__t.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a limiter_iso function.  <a href="structlimiter__iso__t_1_1limiter__iso__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:ae93df12beb723f9884e18937f4312dab"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__iso__t.html#ae93df12beb723f9884e18937f4312dab">limiter_iso_construct</a> (arz, rc, zc, numin, vgrid, on_edge)</td></tr>
-<tr class="memdesc:ae93df12beb723f9884e18937f4312dab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a limiter iso function.  <a href="namespacelimiter__iso__t.html#ae93df12beb723f9884e18937f4312dab">More...</a><br /></td></tr>
-<tr class="separator:ae93df12beb723f9884e18937f4312dab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac3948b7d4d4f033c6f09f60150ed0726"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__iso__t.html#ac3948b7d4d4f033c6f09f60150ed0726">limiter_iso_destruct</a> (this)</td></tr>
-<tr class="memdesc:ac3948b7d4d4f033c6f09f60150ed0726"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a limiter_iso object.  <a href="namespacelimiter__iso__t.html#ac3948b7d4d4f033c6f09f60150ed0726">More...</a><br /></td></tr>
-<tr class="separator:ac3948b7d4d4f033c6f09f60150ed0726"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b757e7a9b05ec278334560651aecf13"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__iso__t.html#a0b757e7a9b05ec278334560651aecf13">limiter_iso_get_max_fval</a> (this, num_theta, phi_index, r, z, rphiz_at_max)</td></tr>
-<tr class="memdesc:a0b757e7a9b05ec278334560651aecf13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the maximum value of the iso function.  <a href="namespacelimiter__iso__t.html#a0b757e7a9b05ec278334560651aecf13">More...</a><br /></td></tr>
-<tr class="separator:a0b757e7a9b05ec278334560651aecf13"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a267ecdcac3da0fe68e4d02bb4587c5e1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__iso__t.html#a267ecdcac3da0fe68e4d02bb4587c5e1">limiter_iso_get_value</a> (this, r, z)</td></tr>
-<tr class="memdesc:a267ecdcac3da0fe68e4d02bb4587c5e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the iso value at an r, phi, z position.  <a href="namespacelimiter__iso__t.html#a267ecdcac3da0fe68e4d02bb4587c5e1">More...</a><br /></td></tr>
-<tr class="separator:a267ecdcac3da0fe68e4d02bb4587c5e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a74d3b2f52f4049c50a9cf8939aa6cacf"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacelimiter__iso__t.html#a74d3b2f52f4049c50a9cf8939aa6cacf">limiter_iso_get_type</a> (this)</td></tr>
-<tr class="memdesc:a74d3b2f52f4049c50a9cf8939aa6cacf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the limiter iso type.  <a href="namespacelimiter__iso__t.html#a74d3b2f52f4049c50a9cf8939aa6cacf">More...</a><br /></td></tr>
-<tr class="separator:a74d3b2f52f4049c50a9cf8939aa6cacf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type limiter_iso. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ae93df12beb723f9884e18937f4312dab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae93df12beb723f9884e18937f4312dab">&#9670;&nbsp;</a></span>limiter_iso_construct()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">class (<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>) function, pointer limiter_iso_t::limiter_iso_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(0:4,0:4), intent(in)&#160;</td>
-          <td class="paramname"><em>arz</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rc</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zc</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>numin</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>vgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>on_edge</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
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-
-<p>Construct a limiter iso function. </p>
-<p>Allocates memory and initializes a limiter_iso object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">arz</td><td>Coefficients for the iso function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rc</td><td>R offset for function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zc</td><td>Z offset for function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">numin</td><td>Minimum number of poloidal angles for s=1 surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vgrid</td><td>Values of toroidal angle at which to compute s=1 surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">on_edge</td><td>Specifies if the edge should touch the limiter or not. If true, the reconstruction tries to have the limiter touch the limiter. If false, the edge will only just fall inside the limiter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed limiter_iso object. </dd></dl>
-
-</div>
-</div>
-<a id="ac3948b7d4d4f033c6f09f60150ed0726"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac3948b7d4d4f033c6f09f60150ed0726">&#9670;&nbsp;</a></span>limiter_iso_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine limiter_iso_t::limiter_iso_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a limiter_iso object. </p>
-<p>Deallocates memory and uninitializes a limiter_iso object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A limiter_iso instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0b757e7a9b05ec278334560651aecf13"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0b757e7a9b05ec278334560651aecf13">&#9670;&nbsp;</a></span>limiter_iso_get_max_fval()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function limiter_iso_t::limiter_iso_get_max_fval </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_theta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>phi_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(out)&#160;</td>
-          <td class="paramname"><em>rphiz_at_max</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the maximum value of the iso function. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A limiter_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_theta</td><td>Number of points in the theta direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_index</td><td>Current phi index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>R positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>Z positions of the last closed flux surface. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rphiz_at_max</td><td>R, Phi, Z position of the maximum function. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The maximum value of the iso function. </dd></dl>
-
-</div>
-</div>
-<a id="a74d3b2f52f4049c50a9cf8939aa6cacf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a74d3b2f52f4049c50a9cf8939aa6cacf">&#9670;&nbsp;</a></span>limiter_iso_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function limiter_iso_t::limiter_iso_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the limiter iso type. </p>
-<p>Returns a description of the limiter type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the limiter type. </dd></dl>
-
-</div>
-</div>
-<a id="a267ecdcac3da0fe68e4d02bb4587c5e1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a267ecdcac3da0fe68e4d02bb4587c5e1">&#9670;&nbsp;</a></span>limiter_iso_get_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">real (rprec) function limiter_iso_t::limiter_iso_get_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html">limiter_iso_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Computes the iso value at an r, phi, z position. </p>
-<p>Limiter iso function is computed as</p>
-<p>e = SUM_over_i(0,4)_j(0,4) [arz(i,j) (r - rc)^i (z - zc)^j] f = e / |grad(e)|</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A limiter_iso instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rpz_arg</td><td>The r point to evaluate at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rpz_arg</td><td>The z point to evaluate at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of iso function at the r, phi, z point. </dd></dl>
-
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">line_segment Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sigments. These line segments are assumed to be specified such that xx(i) &lt; xx(i + 1)  
-<a href="namespaceline__segment.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:aa63bfde0ff39e19622f7f5fe150e8b59"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceline__segment.html#aa63bfde0ff39e19622f7f5fe150e8b59">line_seg</a> (x, y, xx, yy, n)</td></tr>
-<tr class="memdesc:aa63bfde0ff39e19622f7f5fe150e8b59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate a point on a line.  <a href="namespaceline__segment.html#aa63bfde0ff39e19622f7f5fe150e8b59">More...</a><br /></td></tr>
-<tr class="separator:aa63bfde0ff39e19622f7f5fe150e8b59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5686dda904eede25b04410ebada585d3"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceline__segment.html#a5686dda904eede25b04410ebada585d3">line_seg_int</a> (x, y, xx, yy, n)</td></tr>
-<tr class="memdesc:a5686dda904eede25b04410ebada585d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integrate to a point on a line.  <a href="namespaceline__segment.html#a5686dda904eede25b04410ebada585d3">More...</a><br /></td></tr>
-<tr class="separator:a5686dda904eede25b04410ebada585d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad646e194dc6269ad6d052e6a7689b7c8"><td class="memItemLeft" align="right" valign="top">logical function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceline__segment.html#ad646e194dc6269ad6d052e6a7689b7c8">line_seg_test</a> ()</td></tr>
-<tr class="memdesc:ad646e194dc6269ad6d052e6a7689b7c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Line segment unit test function.  <a href="namespaceline__segment.html#ad646e194dc6269ad6d052e6a7689b7c8">More...</a><br /></td></tr>
-<tr class="separator:ad646e194dc6269ad6d052e6a7689b7c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sigments. These line segments are assumed to be specified such that xx(i) &lt; xx(i + 1) </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aa63bfde0ff39e19622f7f5fe150e8b59"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa63bfde0ff39e19622f7f5fe150e8b59">&#9670;&nbsp;</a></span>line_seg()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public line_segment::line_seg </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(out)&#160;</td>
-          <td class="paramname"><em>y</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>xx</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>yy</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate a point on a line. </p>
-<p>Find the linearly interpolated value of y at position x from line sigments specified by yy(xx).</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>X point to interpolate the line at. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">y</td><td>The value of the interpolated point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xx</td><td>X positions defining the line segments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">yy</td><td>Y positions defining the line segments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>Number of points defining the line. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5686dda904eede25b04410ebada585d3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5686dda904eede25b04410ebada585d3">&#9670;&nbsp;</a></span>line_seg_int()</h2>
-
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-          <td class="memname">subroutine, public line_segment::line_seg_int </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(out)&#160;</td>
-          <td class="paramname"><em>y</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>xx</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>yy</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Integrate to a point on a line. </p>
-<p>Find the linearly integrated value of y at position x from line sigments specified by yy(xx).</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x</td><td>X point to interpolate the line at. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">y</td><td>The value of the interpolated point. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xx</td><td>X positions defining the line segments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">yy</td><td>Y positions defining the line segments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>Number of points defining the line. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad646e194dc6269ad6d052e6a7689b7c8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad646e194dc6269ad6d052e6a7689b7c8">&#9670;&nbsp;</a></span>line_seg_test()</h2>
-
-<div class="memitem">
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-          <td class="memname">logical function, public line_segment::line_seg_test</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Line segment unit test function. </p>
-<p>This runs the associated unit tests and returns the result.</p>
-<dl class="section return"><dt>Returns</dt><dd>True if the tests pass and false otherwise. </dd></dl>
-
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<a href="#nested-classes">Data Types</a> &#124;
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-  <div class="headertitle">
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-
-<p>Defines the base class of the type <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>. This contains the state variables to define the vacuum vector potential.  
-<a href="namespacem__grid.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a m grid. This is grid contains information about the vacuum fields.  <a href="structm__grid_1_1m__grid__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a82a5959daa406881e3eda3500490e5c0"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacem__grid.html#a82a5959daa406881e3eda3500490e5c0">m_grid_construct</a> (mgrid_file_name, parallel, io_unit, vmec)</td></tr>
-<tr class="memdesc:a82a5959daa406881e3eda3500490e5c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object.  <a href="namespacem__grid.html#a82a5959daa406881e3eda3500490e5c0">More...</a><br /></td></tr>
-<tr class="separator:a82a5959daa406881e3eda3500490e5c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3504fc5f26eb34ffa5887255c4b453bb"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacem__grid.html#a3504fc5f26eb34ffa5887255c4b453bb">m_grid_construct_plasma</a> (num_r, num_p, num_z, rmax, rmin, zmax, zmin, parallel, io_unit, vmec)</td></tr>
-<tr class="memdesc:a3504fc5f26eb34ffa5887255c4b453bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object.  <a href="namespacem__grid.html#a3504fc5f26eb34ffa5887255c4b453bb">More...</a><br /></td></tr>
-<tr class="separator:a3504fc5f26eb34ffa5887255c4b453bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc2241a933a92830d606b50ca1d5e5c8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacem__grid.html#afc2241a933a92830d606b50ca1d5e5c8">m_grid_destruct</a> (this)</td></tr>
-<tr class="memdesc:afc2241a933a92830d606b50ca1d5e5c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object.  <a href="namespacem__grid.html#afc2241a933a92830d606b50ca1d5e5c8">More...</a><br /></td></tr>
-<tr class="separator:afc2241a933a92830d606b50ca1d5e5c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a62165b48e4076f166acd40a1c6b41c11"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacem__grid.html#a62165b48e4076f166acd40a1c6b41c11">m_grid_interpolate</a> (this, r, phi, z, ar, ap, az)</td></tr>
-<tr class="memdesc:a62165b48e4076f166acd40a1c6b41c11"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate the vector potential at a point.  <a href="namespacem__grid.html#a62165b48e4076f166acd40a1c6b41c11">More...</a><br /></td></tr>
-<tr class="separator:a62165b48e4076f166acd40a1c6b41c11"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8f073c0dd72c25135a69349132dea39e"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacem__grid.html#a8f073c0dd72c25135a69349132dea39e">m_grid_intf</a> (w1, w2, x)</td></tr>
-<tr class="memdesc:a8f073c0dd72c25135a69349132dea39e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate the vector potential at a point.  <a href="namespacem__grid.html#a8f073c0dd72c25135a69349132dea39e">More...</a><br /></td></tr>
-<tr class="separator:a8f073c0dd72c25135a69349132dea39e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>. This contains the state variables to define the vacuum vector potential. </p>
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-<a id="a82a5959daa406881e3eda3500490e5c0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a82a5959daa406881e3eda3500490e5c0">&#9670;&nbsp;</a></span>m_grid_construct()</h2>
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-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
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-<p>Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object with an mgrid file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>File name for vacuum fields. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
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-          <td></td>
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-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>rmax</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
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-
-<p>Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> for plasma only responce on a manual grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_r</td><td>Number of radial points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of toroidal points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_z</td><td>Number of vertical points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>The vmec file object. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#afc2241a933a92830d606b50ca1d5e5c8">&#9670;&nbsp;</a></span>m_grid_destruct()</h2>
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-<div class="memitem">
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-      <table class="memname">
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-          <td class="memname">subroutine m_grid::m_grid_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a62165b48e4076f166acd40a1c6b41c11"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a62165b48e4076f166acd40a1c6b41c11">&#9670;&nbsp;</a></span>m_grid_interpolate()</h2>
-
-<div class="memitem">
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-          <td class="memname">pure subroutine m_grid::m_grid_interpolate </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(out)&#160;</td>
-          <td class="paramname"><em>ar</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(out)&#160;</td>
-          <td class="paramname"><em>ap</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(out)&#160;</td>
-          <td class="paramname"><em>az</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate the vector potential at a point. </p>
-<p>This interpolates the vector potential to from the mgrid grid to an arbitrary point. This performs a trilinear interpolation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>Radial position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>Phi position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>Vertical position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ar</td><td>Interpolated radial component of the vector potential. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ap</td><td>Interpolated phi component of the vector potential. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">az</td><td>Interpolated vertial component of the vector potential. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8f073c0dd72c25135a69349132dea39e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8f073c0dd72c25135a69349132dea39e">&#9670;&nbsp;</a></span>m_grid_intf()</h2>
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-          <td class="memname">pure real (rprec) function m_grid::m_grid_intf </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>w1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>w2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>x</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate the vector potential at a point. </p>
-<p>This interpolates the vector potential to from the mgrid grid to an arbitrary point. This performs a trilinear interpolation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>Radial position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>Phi position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z</td><td>Vertical position to interpolate to. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ar</td><td>Interpolated radial component of the vector potential. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ap</td><td>Interpolated phi component of the vector potential. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">az</td><td>Interpolated vertial component of the vector potential. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<a href="#nested-classes">Data Types</a> &#124;
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-<a href="#var-members">Variables</a>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>.  
-<a href="namespacemagnetic.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a magnetic signal.  <a href="structmagnetic_1_1magnetic__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="memitem:ac4f24290f7a24a5644c866577d92e4e5"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#ac4f24290f7a24a5644c866577d92e4e5">magnetic_construct_netcdf</a> (mdsig_iou, use_coil_response, force_coil_reponse, use_3D_only, svd_cut_off)</td></tr>
-<tr class="memdesc:ac4f24290f7a24a5644c866577d92e4e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object containing a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response::magnetic_response_class</a> object.  <a href="namespacemagnetic.html#ac4f24290f7a24a5644c866577d92e4e5">More...</a><br /></td></tr>
-<tr class="separator:ac4f24290f7a24a5644c866577d92e4e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6c8629127f9b0470d1313868c59b6982"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#a6c8629127f9b0470d1313868c59b6982">magnetic_destruct</a> (this)</td></tr>
-<tr class="memdesc:a6c8629127f9b0470d1313868c59b6982"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object.  <a href="namespacemagnetic.html#a6c8629127f9b0470d1313868c59b6982">More...</a><br /></td></tr>
-<tr class="separator:a6c8629127f9b0470d1313868c59b6982"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaa11a4bdaae2647f6546a9f9c331057b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#aaa11a4bdaae2647f6546a9f9c331057b">magnetic_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:aaa11a4bdaae2647f6546a9f9c331057b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespacemagnetic.html#aaa11a4bdaae2647f6546a9f9c331057b">More...</a><br /></td></tr>
-<tr class="separator:aaa11a4bdaae2647f6546a9f9c331057b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6afde045b078bf8c5a3230ecf9b9ccce"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#a6afde045b078bf8c5a3230ecf9b9ccce">magnetic_get_modeled_signal_point</a> (this, a_model, sigma)</td></tr>
-<tr class="memdesc:a6afde045b078bf8c5a3230ecf9b9ccce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the point modeled signal.  <a href="namespacemagnetic.html#a6afde045b078bf8c5a3230ecf9b9ccce">More...</a><br /></td></tr>
-<tr class="separator:a6afde045b078bf8c5a3230ecf9b9ccce"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adf463be6bae38afa96d325a0a0bcae5c"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#adf463be6bae38afa96d325a0a0bcae5c">magnetic_get_modeled_signal_coil</a> (this, a_model, sigma)</td></tr>
-<tr class="memdesc:adf463be6bae38afa96d325a0a0bcae5c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the coil modeled signal.  <a href="namespacemagnetic.html#adf463be6bae38afa96d325a0a0bcae5c">More...</a><br /></td></tr>
-<tr class="separator:adf463be6bae38afa96d325a0a0bcae5c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e2ec298bb1b6eed9875fc7cb944b429"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#a7e2ec298bb1b6eed9875fc7cb944b429">magnetic_get_modeled_signal_coil_pickup</a> (this, a_model)</td></tr>
-<tr class="memdesc:a7e2ec298bb1b6eed9875fc7cb944b429"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the model signal contribution from the external coils.  <a href="namespacemagnetic.html#a7e2ec298bb1b6eed9875fc7cb944b429">More...</a><br /></td></tr>
-<tr class="separator:a7e2ec298bb1b6eed9875fc7cb944b429"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0292ac383a7c465f2d946c13361f901"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#ae0292ac383a7c465f2d946c13361f901">magnetic_get_type</a> (this)</td></tr>
-<tr class="memdesc:ae0292ac383a7c465f2d946c13361f901"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the magnetic type.  <a href="namespacemagnetic.html#ae0292ac383a7c465f2d946c13361f901">More...</a><br /></td></tr>
-<tr class="separator:ae0292ac383a7c465f2d946c13361f901"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1f0d1596b2e0e5e2f7b0cf38cd6b8542"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#a1f0d1596b2e0e5e2f7b0cf38cd6b8542">magnetic_get_header</a> (this, header)</td></tr>
-<tr class="memdesc:a1f0d1596b2e0e5e2f7b0cf38cd6b8542"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespacemagnetic.html#a1f0d1596b2e0e5e2f7b0cf38cd6b8542">More...</a><br /></td></tr>
-<tr class="separator:a1f0d1596b2e0e5e2f7b0cf38cd6b8542"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ace6b713a5da512973c7d28889243f67b"><td class="memItemLeft" align="right" valign="top"><a id="ace6b713a5da512973c7d28889243f67b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#ace6b713a5da512973c7d28889243f67b">magnetic_force_coil_flag</a> = 1</td></tr>
-<tr class="memdesc:ace6b713a5da512973c7d28889243f67b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use coil response flag. <br /></td></tr>
-<tr class="separator:ace6b713a5da512973c7d28889243f67b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abe1c16a75fd75d819b1389704cc0a406"><td class="memItemLeft" align="right" valign="top"><a id="abe1c16a75fd75d819b1389704cc0a406"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic.html#abe1c16a75fd75d819b1389704cc0a406">magnetic_3d_flag</a> = 2</td></tr>
-<tr class="memdesc:abe1c16a75fd75d819b1389704cc0a406"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the force coil response flag. <br /></td></tr>
-<tr class="separator:abe1c16a75fd75d819b1389704cc0a406"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ac4f24290f7a24a5644c866577d92e4e5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac4f24290f7a24a5644c866577d92e4e5">&#9670;&nbsp;</a></span>magnetic_construct_netcdf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>) function, pointer magnetic::magnetic_construct_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_coil_response</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_coil_reponse</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_3D_only</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object containing a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response::magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mdsig_iou</td><td>An instance of a the netcdf id of the open mdsig file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_coil_response</td><td>Toggle if the total signal contains the induced signal in addition to the plasma only signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_coil_reponse</td><td>Force the coil response to be computed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_3D_only</td><td>Subtract of the axisymmtric porition of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svd_cut_off</td><td>Cutoff value for the number of singular values to retain when compressing the response function arrays. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a6c8629127f9b0470d1313868c59b6982"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c8629127f9b0470d1313868c59b6982">&#9670;&nbsp;</a></span>magnetic_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine magnetic::magnetic_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1f0d1596b2e0e5e2f7b0cf38cd6b8542"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1f0d1596b2e0e5e2f7b0cf38cd6b8542">&#9670;&nbsp;</a></span>magnetic_get_header()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine magnetic::magnetic_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>Returns a description of the array indices for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">header</td><td>Buffer arrays to write header strings to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the model and model sigma array indices. </dd></dl>
-
-</div>
-</div>
-<a id="aaa11a4bdaae2647f6546a9f9c331057b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaa11a4bdaae2647f6546a9f9c331057b">&#9670;&nbsp;</a></span>magnetic_get_modeled_signal()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function, dimension(4) magnetic::magnetic_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>The modeled signal can be computed in one of two ways. Modeled as a full coil or as a point measurement.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="adf463be6bae38afa96d325a0a0bcae5c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adf463be6bae38afa96d325a0a0bcae5c">&#9670;&nbsp;</a></span>magnetic_get_modeled_signal_coil()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) magnetic::magnetic_get_modeled_signal_coil </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the coil modeled signal. </p>
-<p>The plasma signal is the volume integral of the current denisty dotted with the diagnostic response function vector. The response_function contains a rz grid of reponce function vectors. These grid points are then interpolated into the equilibrium grid positions for a single toroidal plane. Hishman et. al. Phys. Plasmas 11, 595 (2004); doi: 10.1063/1.1637347</p>
-<p>phi = Int[dV J_plasma * A_diag]</p>
-<p>J_plasma and dV are obtained from the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. A_diag is obtained from the <a class="el" href="namespacemagnetic__response.html">magnetic_response</a> External current contribrutions are included by the dot product of the external currents with mutual inductance values. These currents are obtained from <a class="el" href="namespaceequilibrium.html">equilibrium</a> if they exist. The plasma only signal is stored in the 2nd index. The external current signal is stored in the 3rd index. Total signal is the sum of plasma signal and external signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000004">Todo:</a></b></dt><dd>FIXME: For a single diagnostic these never change. Allocate these once and cache these in the <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a7e2ec298bb1b6eed9875fc7cb944b429"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7e2ec298bb1b6eed9875fc7cb944b429">&#9670;&nbsp;</a></span>magnetic_get_modeled_signal_coil_pickup()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">real (rprec) function magnetic::magnetic_get_modeled_signal_coil_pickup </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the model signal contribution from the external coils. </p>
-<p>Return the protion of the modeled signal for the induced pickup of the external coils. If no external coils exist or the induced current is not used this returns zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The modeled signal from the induced coils. </dd></dl>
-
-</div>
-</div>
-<a id="a6afde045b078bf8c5a3230ecf9b9ccce"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6afde045b078bf8c5a3230ecf9b9ccce">&#9670;&nbsp;</a></span>magnetic_get_modeled_signal_point()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) magnetic::magnetic_get_modeled_signal_point </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the point modeled signal. </p>
-<p>The plasma signal is the surface integral of the virtual current denisty. This is computed using the virtual casing routines in LIBSTELL. External current contribrutions are included by the dot product of the external currents with a linear combination of the external fields. The plasma only signal is stored in the 2nd index. The external current signal is stored in the 3rd index. Total signal is the sum of plasma signal and external signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="ae0292ac383a7c465f2d946c13361f901"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae0292ac383a7c465f2d946c13361f901">&#9670;&nbsp;</a></span>magnetic_get_type()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-<p>Gets a discription of the magnetic type. </p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> instance. </td></tr>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<p>Defines the base class of the type <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html">magnetic_response_construct</a></td></tr>
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-<tr class="memitem:a285dfc0eaaf62c559d708dbbf96be7fb"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a285dfc0eaaf62c559d708dbbf96be7fb">magnetic_response_construct_new</a> (name, date, coil_id, inductance, current_scale, num_t, num_t_shell, rmin, rmax, zmin, zmax, n_field_periods, stell_sym, a_r, a_f, a_z, a_s_r, a_s_f, a_s_z, svd_cut_off)</td></tr>
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-<tr class="memitem:ac682e9802057231ed94d61dad4d3f4fe"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ac682e9802057231ed94d61dad4d3f4fe">magnetic_response_construct_point</a> (name, date, coil_id, position, direction, vacuum, current_scale)</td></tr>
-<tr class="memdesc:ac682e9802057231ed94d61dad4d3f4fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.  <a href="namespacemagnetic__response.html#ac682e9802057231ed94d61dad4d3f4fe">More...</a><br /></td></tr>
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-<tr class="memitem:a8a3c69caf524992b84c1c81f875e3d02"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8a3c69caf524992b84c1c81f875e3d02">magnetic_response_construct_netcdf</a> (mdsig_iou, svd_cut_off)</td></tr>
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-<tr class="separator:a8a3c69caf524992b84c1c81f875e3d02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a6faca573822aa7a36c85d67436bb20"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a0a6faca573822aa7a36c85d67436bb20">magnetic_response_destruct</a> (this)</td></tr>
-<tr class="memdesc:a0a6faca573822aa7a36c85d67436bb20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.  <a href="namespacemagnetic__response.html#a0a6faca573822aa7a36c85d67436bb20">More...</a><br /></td></tr>
-<tr class="separator:a0a6faca573822aa7a36c85d67436bb20"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae503fd44115e43936e270762af3c9c76"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ae503fd44115e43936e270762af3c9c76">magnetic_response_is_stell_sym</a> (this)</td></tr>
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-<tr class="separator:ae503fd44115e43936e270762af3c9c76"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a093388178841979640266142545c52ec"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a093388178841979640266142545c52ec">magnetic_response_use_plasma</a> (this)</td></tr>
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-<tr class="separator:a093388178841979640266142545c52ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a618b82f71541810b185f0b2eea7cd63a"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a618b82f71541810b185f0b2eea7cd63a">magnetic_response_use_shell</a> (this)</td></tr>
-<tr class="memdesc:a618b82f71541810b185f0b2eea7cd63a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the conducting shell flag is set.  <a href="namespacemagnetic__response.html#a618b82f71541810b185f0b2eea7cd63a">More...</a><br /></td></tr>
-<tr class="separator:a618b82f71541810b185f0b2eea7cd63a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaeb6da528af6df184173324b8b1c33ed"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#aaeb6da528af6df184173324b8b1c33ed">magnetic_response_use_coil</a> (this)</td></tr>
-<tr class="memdesc:aaeb6da528af6df184173324b8b1c33ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the coil response flag is set.  <a href="namespacemagnetic__response.html#aaeb6da528af6df184173324b8b1c33ed">More...</a><br /></td></tr>
-<tr class="separator:aaeb6da528af6df184173324b8b1c33ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a98b69bdb70e180a00540a91de0972dd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a70fb1c99952e833eab598120232b2be6"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a70fb1c99952e833eab598120232b2be6">magnetic_response_is_point</a> (this)</td></tr>
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-<tr class="separator:a70fb1c99952e833eab598120232b2be6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a2fb61c92491193e14b707f8e3ae02790"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defines the variables for the NETCDF file.  <a href="namespacemagnetic__response.html#a2fb61c92491193e14b707f8e3ae02790">More...</a><br /></td></tr>
-<tr class="separator:a2fb61c92491193e14b707f8e3ae02790"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab440979ffdd567a11312502214d8953f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write variables to the NETCDF file.  <a href="namespacemagnetic__response.html#ab440979ffdd567a11312502214d8953f">More...</a><br /></td></tr>
-<tr class="separator:ab440979ffdd567a11312502214d8953f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab85fa1592305f7e52be21ad25cb5d007"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version for the MDSIG files. This version adds the point diagnostics. <br /></td></tr>
-<tr class="separator:ab85fa1592305f7e52be21ad25cb5d007"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a19a9c4e03d34dd6cd6a3e7677b43c86c"><td class="memItemLeft" align="right" valign="top">character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a19a9c4e03d34dd6cd6a3e7677b43c86c">magnetic_response_20140928</a> = 'MRC 2014-09-28'</td></tr>
-<tr class="memdesc:a19a9c4e03d34dd6cd6a3e7677b43c86c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version for the MDSIG files. This version adds the conducting shell.  <a href="namespacemagnetic__response.html#a19a9c4e03d34dd6cd6a3e7677b43c86c">More...</a><br /></td></tr>
-<tr class="separator:a19a9c4e03d34dd6cd6a3e7677b43c86c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a10943ec3427fe606cf61e09ad709aaf9"><td class="memItemLeft" align="right" valign="top"><a id="a10943ec3427fe606cf61e09ad709aaf9"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a10943ec3427fe606cf61e09ad709aaf9">magnetic_response_len</a> = 80</td></tr>
-<tr class="memdesc:a10943ec3427fe606cf61e09ad709aaf9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Length for strings. <br /></td></tr>
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-<tr class="memitem:a72e86e40fced0ed47954541307e4a4a5"><td class="memItemLeft" align="right" valign="top"><a id="a72e86e40fced0ed47954541307e4a4a5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a72e86e40fced0ed47954541307e4a4a5">magnetic_response_use_coil_flag</a> = 1</td></tr>
-<tr class="memdesc:a72e86e40fced0ed47954541307e4a4a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use coil response flag. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a431c04b753028230aa2aee51de6f7c87">magnetic_response_use_plasma_flag</a> = 2</td></tr>
-<tr class="memdesc:a431c04b753028230aa2aee51de6f7c87"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the force coil response flag. <br /></td></tr>
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-<tr class="memdesc:a8808835831253f96bffea0f6ffe605a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the stellerator symmetry flag. <br /></td></tr>
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-<tr class="memdesc:ade73142d3199ee5c7e944e4bed988ea3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use conducting shell flag. <br /></td></tr>
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-<tr class="memdesc:aee85d86f3ec99cc3e28bad6f24d6683b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use conducting shell flag. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a377635cff73471fb51264334a3c5446b">nc_flags</a> = 'mddc_mrf_flags'</td></tr>
-<tr class="memdesc:a377635cff73471fb51264334a3c5446b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF configureation flags. <br /></td></tr>
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-<tr class="memitem:a661f8c1a5a744a0f7e0a5cabe158c08d"><td class="memItemLeft" align="right" valign="top"><a id="a661f8c1a5a744a0f7e0a5cabe158c08d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a661f8c1a5a744a0f7e0a5cabe158c08d">nc_name</a> = 'mddc_mrf_code_name'</td></tr>
-<tr class="memdesc:a661f8c1a5a744a0f7e0a5cabe158c08d"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF code name variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a671670c1c3a8cf7df312bfca840cb679">nc_version</a> = 'mddc_mrf_code_version'</td></tr>
-<tr class="memdesc:a671670c1c3a8cf7df312bfca840cb679"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF version variable. <br /></td></tr>
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-<tr class="memitem:a08a0a129f29167104d40cb25e2ce2d3f"><td class="memItemLeft" align="right" valign="top"><a id="a08a0a129f29167104d40cb25e2ce2d3f"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a08a0a129f29167104d40cb25e2ce2d3f">nc_date</a> = 'mddc_mrf_date_run'</td></tr>
-<tr class="memdesc:a08a0a129f29167104d40cb25e2ce2d3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF date run variable. <br /></td></tr>
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-<tr class="memitem:ae4bcf102a02e80af6cfcb3c86b01b1fb"><td class="memItemLeft" align="right" valign="top"><a id="ae4bcf102a02e80af6cfcb3c86b01b1fb"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ae4bcf102a02e80af6cfcb3c86b01b1fb">nc_coil_id</a> = 'mddc_mrf_field_coils_id'</td></tr>
-<tr class="memdesc:ae4bcf102a02e80af6cfcb3c86b01b1fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF coil identifier variable. <br /></td></tr>
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-<tr class="memitem:aee0890ad647c2237e011b8834f0843d5"><td class="memItemLeft" align="right" valign="top"><a id="aee0890ad647c2237e011b8834f0843d5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#aee0890ad647c2237e011b8834f0843d5">nc_n_field_cg</a> = 'mddc_mrf_n_field_cg'</td></tr>
-<tr class="memdesc:aee0890ad647c2237e011b8834f0843d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number of field coils variable. <br /></td></tr>
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-<tr class="memitem:a03cc304eecb2b8be6aabb511dc673980"><td class="memItemLeft" align="right" valign="top"><a id="a03cc304eecb2b8be6aabb511dc673980"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a03cc304eecb2b8be6aabb511dc673980">nc_inductance</a> = 'mddc_mrf_rdiag_coilg_1'</td></tr>
-<tr class="memdesc:a03cc304eecb2b8be6aabb511dc673980"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF mutual inductance variable. <br /></td></tr>
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-<tr class="memitem:ae4f38b668b2271f8bf2750d96c4f6047"><td class="memItemLeft" align="right" valign="top"><a id="ae4f38b668b2271f8bf2750d96c4f6047"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ae4f38b668b2271f8bf2750d96c4f6047">nc_current_scale</a> = 'mddc_mrf_extcur_mg'</td></tr>
-<tr class="memdesc:ae4f38b668b2271f8bf2750d96c4f6047"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF current scale variable. <br /></td></tr>
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-<tr class="memitem:a9d9c5d66cc5e453fad8bc47748e8a21c"><td class="memItemLeft" align="right" valign="top"><a id="a9d9c5d66cc5e453fad8bc47748e8a21c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a9d9c5d66cc5e453fad8bc47748e8a21c">nc_num_t</a> = 'mddc_mrf_kp'</td></tr>
-<tr class="memdesc:a9d9c5d66cc5e453fad8bc47748e8a21c"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number torodial planes variable. <br /></td></tr>
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-<tr class="memitem:afc4a7effc7a36290e1bc02f6b4ccaa19"><td class="memItemLeft" align="right" valign="top"><a id="afc4a7effc7a36290e1bc02f6b4ccaa19"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afc4a7effc7a36290e1bc02f6b4ccaa19">nc_num_r</a> = 'mddc_mrf_ir'</td></tr>
-<tr class="memdesc:afc4a7effc7a36290e1bc02f6b4ccaa19"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number radial grid points variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a2d943c18a4e46759fd54bcfb16facc91">nc_num_z</a> = 'mddc_mrf_jz'</td></tr>
-<tr class="memdesc:a2d943c18a4e46759fd54bcfb16facc91"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number vertical grid points variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a6151973de2478d2eb30efca1111a5658">nc_rmin</a> = 'mddc_mrf_rmin'</td></tr>
-<tr class="memdesc:a6151973de2478d2eb30efca1111a5658"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF minimum radial grid variable. <br /></td></tr>
-<tr class="separator:a6151973de2478d2eb30efca1111a5658"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d966ea9fc3a0501f9e84bdb44779896"><td class="memItemLeft" align="right" valign="top"><a id="a6d966ea9fc3a0501f9e84bdb44779896"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a6d966ea9fc3a0501f9e84bdb44779896">nc_rmax</a> = 'mddc_mrf_rmax'</td></tr>
-<tr class="memdesc:a6d966ea9fc3a0501f9e84bdb44779896"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF maximum radial grid variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ad350254e3e5d6ad2dbf2c3b1cb54293e">nc_zmin</a> = 'mddc_mrf_zmin'</td></tr>
-<tr class="memdesc:ad350254e3e5d6ad2dbf2c3b1cb54293e"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF minimum vertical grid variable. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8c097bff7e13a5b42a56f8866510d9f0">nc_zmax</a> = 'mddc_mrf_zmax'</td></tr>
-<tr class="memdesc:a8c097bff7e13a5b42a56f8866510d9f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF maximum vertical grid variable. <br /></td></tr>
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-<tr class="memitem:a348654f29ff0cdc89862982a0cc47059"><td class="memItemLeft" align="right" valign="top"><a id="a348654f29ff0cdc89862982a0cc47059"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a348654f29ff0cdc89862982a0cc47059">nc_n_field_periods</a> = 'mddc_mrf_n_field_periods'</td></tr>
-<tr class="memdesc:a348654f29ff0cdc89862982a0cc47059"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number of field periods variable. <br /></td></tr>
-<tr class="separator:a348654f29ff0cdc89862982a0cc47059"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a802b95c014d5b7807d5c855f23650a47"><td class="memItemLeft" align="right" valign="top">character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a802b95c014d5b7807d5c855f23650a47">nc_stell_sym</a> = 'mddc_mrf_lstell_sym'</td></tr>
-<tr class="memdesc:a802b95c014d5b7807d5c855f23650a47"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF stell symmetric variable.  <a href="namespacemagnetic__response.html#a802b95c014d5b7807d5c855f23650a47">More...</a><br /></td></tr>
-<tr class="separator:a802b95c014d5b7807d5c855f23650a47"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac90967bd2193a946f1ac2b5cae5b7075"><td class="memItemLeft" align="right" valign="top"><a id="ac90967bd2193a946f1ac2b5cae5b7075"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ac90967bd2193a946f1ac2b5cae5b7075">nc_a_r</a> = 'mddc_mrf_a_r'</td></tr>
-<tr class="memdesc:ac90967bd2193a946f1ac2b5cae5b7075"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF radial response grid variable. <br /></td></tr>
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-<tr class="memitem:a8219ecf05d9cfda7380dbe44f011c32b"><td class="memItemLeft" align="right" valign="top"><a id="a8219ecf05d9cfda7380dbe44f011c32b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8219ecf05d9cfda7380dbe44f011c32b">nc_a_f</a> = 'mddc_mrf_a_f'</td></tr>
-<tr class="memdesc:a8219ecf05d9cfda7380dbe44f011c32b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF toroidal response grid variable. <br /></td></tr>
-<tr class="separator:a8219ecf05d9cfda7380dbe44f011c32b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a50a3044f18314c3c20f47336d4772187"><td class="memItemLeft" align="right" valign="top"><a id="a50a3044f18314c3c20f47336d4772187"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a50a3044f18314c3c20f47336d4772187">nc_a_z</a> = 'mddc_mrf_a_z'</td></tr>
-<tr class="memdesc:a50a3044f18314c3c20f47336d4772187"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF vertical response grid variable. <br /></td></tr>
-<tr class="separator:a50a3044f18314c3c20f47336d4772187"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8293da9b59bf6661dcc63c58c87c856f"><td class="memItemLeft" align="right" valign="top">character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a8293da9b59bf6661dcc63c58c87c856f">nc_use_shell</a> = 'mddc_mrf_use_con_shell'</td></tr>
-<tr class="memdesc:a8293da9b59bf6661dcc63c58c87c856f"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF use conducting shell variable.  <a href="namespacemagnetic__response.html#a8293da9b59bf6661dcc63c58c87c856f">More...</a><br /></td></tr>
-<tr class="separator:a8293da9b59bf6661dcc63c58c87c856f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd827d914cd8638102a2add1326ce0b3"><td class="memItemLeft" align="right" valign="top"><a id="afd827d914cd8638102a2add1326ce0b3"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afd827d914cd8638102a2add1326ce0b3">nc_num_t_shell</a> = 'mddc_mrf_kp_shell'</td></tr>
-<tr class="memdesc:afd827d914cd8638102a2add1326ce0b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number torodial shell grid points variable. <br /></td></tr>
-<tr class="separator:afd827d914cd8638102a2add1326ce0b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac33927f664904642f1e8c8b84233a810"><td class="memItemLeft" align="right" valign="top"><a id="ac33927f664904642f1e8c8b84233a810"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#ac33927f664904642f1e8c8b84233a810">nc_a_s_r</a> = 'mddc_mrf_a_s_r'</td></tr>
-<tr class="memdesc:ac33927f664904642f1e8c8b84233a810"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF radial response shell grid variable. <br /></td></tr>
-<tr class="separator:ac33927f664904642f1e8c8b84233a810"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59966b46243e040479adcd0fc9eb96bc"><td class="memItemLeft" align="right" valign="top"><a id="a59966b46243e040479adcd0fc9eb96bc"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a59966b46243e040479adcd0fc9eb96bc">nc_a_s_f</a> = 'mddc_mrf_a_s_f'</td></tr>
-<tr class="memdesc:a59966b46243e040479adcd0fc9eb96bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF toroidal response shell grid variable. <br /></td></tr>
-<tr class="separator:a59966b46243e040479adcd0fc9eb96bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="memItemLeft" align="right" valign="top"><a id="afb7952ef4266fbdb5fbe6a33a3fdc41a"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#afb7952ef4266fbdb5fbe6a33a3fdc41a">nc_a_s_z</a> = 'mddc_mrf_a_s_z'</td></tr>
-<tr class="memdesc:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF vertical response shell grid variable. <br /></td></tr>
-<tr class="separator:afb7952ef4266fbdb5fbe6a33a3fdc41a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63a526966fa0ad3e92f21ce83c00178b"><td class="memItemLeft" align="right" valign="top"><a id="a63a526966fa0ad3e92f21ce83c00178b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a63a526966fa0ad3e92f21ce83c00178b">nc_position</a> = 'mddc_mrf_position'</td></tr>
-<tr class="memdesc:a63a526966fa0ad3e92f21ce83c00178b"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF use conducting shell variable. <br /></td></tr>
-<tr class="separator:a63a526966fa0ad3e92f21ce83c00178b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4085596dc3d2a77ba5b70abb787a3d6f"><td class="memItemLeft" align="right" valign="top"><a id="a4085596dc3d2a77ba5b70abb787a3d6f"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemagnetic__response.html#a4085596dc3d2a77ba5b70abb787a3d6f">nc_direction</a> = 'mddc_mrf_direction'</td></tr>
-<tr class="memdesc:a4085596dc3d2a77ba5b70abb787a3d6f"><td class="mdescLeft">&#160;</td><td class="mdescRight">NETCDF number torodial shell grid points variable. <br /></td></tr>
-<tr class="separator:a4085596dc3d2a77ba5b70abb787a3d6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a98b69bdb70e180a00540a91de0972dd4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a98b69bdb70e180a00540a91de0972dd4">&#9670;&nbsp;</a></span>magnetic_response_clr_use_coil()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine magnetic_response::magnetic_response_clr_use_coil </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Clears the coil response bit. </p>
-<p>This is a convenience method so that outside callers do not need to clear bits directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the flag is set. </dd></dl>
-
-</div>
-</div>
-<a id="a8a3c69caf524992b84c1c81f875e3d02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8a3c69caf524992b84c1c81f875e3d02">&#9670;&nbsp;</a></span>magnetic_response_construct_netcdf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object from a mdsig file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mdsig_iou</td><td>An instance of a the netcdf id of the open mdsig file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svd_cut_off</td><td>Cutoff on singular values for data compression. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a285dfc0eaaf62c559d708dbbf96be7fb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a285dfc0eaaf62c559d708dbbf96be7fb">&#9670;&nbsp;</a></span>magnetic_response_construct_new()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct_new </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>date</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coil_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>inductance</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>current_scale</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_t</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_t_shell</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>rmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmax</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>n_field_periods</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>stell_sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_f</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_f</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>a_s_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>svd_cut_off</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the code which computed the responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">date</td><td>Data and time the code was run. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coil_id</td><td>Idenifier of field-coils. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">inductance</td><td>Array of diagnostic field-coil-group responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_scale</td><td>Array of external current scales. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_t</td><td>Number of phi planes per field period in plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_t_shell</td><td>Number of phi planes per field period in the conducting shell grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum R for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum R for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum z for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum z for plasma grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">n_field_periods</td><td>Number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">stell_sym</td><td>Use stellarator symmetry. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_r</td><td>R component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_f</td><td>Phi component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_z</td><td>Z component of plasma response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_r</td><td>R component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_f</td><td>Phi component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_s_z</td><td>Z component of the conducting shell response function. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">svd_cut_off</td><td>Cutoff on singular values for data compression. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ac682e9802057231ed94d61dad4d3f4fe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac682e9802057231ed94d61dad4d3f4fe">&#9670;&nbsp;</a></span>magnetic_response_construct_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>) function, pointer magnetic_response::magnetic_response_construct_point </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>date</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coil_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3)&#160;</td>
-          <td class="paramname"><em>position</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3)&#160;</td>
-          <td class="paramname"><em>direction</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>vacuum</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>current_scale</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the code which computed the responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">date</td><td>Data and time the code was run. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coil_id</td><td>Idenifier of field-coils. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Position of the point measurement. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">direction</td><td>Direction of the point measurement. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vacuum</td><td>Array of diagnostic vacuum responses. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_scale</td><td>Array of external current scales. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a2fb61c92491193e14b707f8e3ae02790"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2fb61c92491193e14b707f8e3ae02790">&#9670;&nbsp;</a></span>magnetic_response_define()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine magnetic_response::magnetic_response_define </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Defines the variables for the NETCDF file. </p>
-<p>Write out the magnetic response to an mdsig file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mdsig_iou</td><td>An instance of a the netcdf id of the open mdsig file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0a6faca573822aa7a36c85d67436bb20"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0a6faca573822aa7a36c85d67436bb20">&#9670;&nbsp;</a></span>magnetic_response_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine magnetic_response::magnetic_response_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a70fb1c99952e833eab598120232b2be6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a70fb1c99952e833eab598120232b2be6">&#9670;&nbsp;</a></span>magnetic_response_is_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function magnetic_response::magnetic_response_is_point </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the coil response flag is set. </p>
-<p>This is a convenience method so that outside callers do not need to test bits directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the flag is set. </dd></dl>
-
-</div>
-</div>
-<a id="ae503fd44115e43936e270762af3c9c76"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae503fd44115e43936e270762af3c9c76">&#9670;&nbsp;</a></span>magnetic_response_is_stell_sym()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function magnetic_response::magnetic_response_is_stell_sym </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the stellarator symmetric flag is set. </p>
-<p>This is a convenience method so that outside callers do not need to test bits directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the flag is set. </dd></dl>
-
-</div>
-</div>
-<a id="aaeb6da528af6df184173324b8b1c33ed"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaeb6da528af6df184173324b8b1c33ed">&#9670;&nbsp;</a></span>magnetic_response_use_coil()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function magnetic_response::magnetic_response_use_coil </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the coil response flag is set. </p>
-<p>This is a convenience method so that outside callers do not need to test bits directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the flag is set. </dd></dl>
-
-</div>
-</div>
-<a id="a093388178841979640266142545c52ec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a093388178841979640266142545c52ec">&#9670;&nbsp;</a></span>magnetic_response_use_plasma()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function magnetic_response::magnetic_response_use_plasma </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the plasma flag is set. </p>
-<p>This is a convenience method so that outside callers do not need to test bits directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<div class="memitem">
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-          <td class="memname">logical function magnetic_response::magnetic_response_use_shell </td>
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-<p>Checks if the conducting shell flag is set. </p>
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-  <table class="params">
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-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
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-        <tr>
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-<p>Write variables to the NETCDF file. </p>
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-  <table class="params">
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-  </dd>
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-
-</div>
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-        </tr>
-      </table>
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-
-<p>Version for the MDSIG files. This version adds the conducting shell. </p>
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000001">Deprecated:</a></b></dt><dd></dd></dl>
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-        </tr>
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-
-<p>NETCDF stell symmetric variable. </p>
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-
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-<p>NETCDF use conducting shell variable. </p>
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-</li>
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-</li>
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-</li>
-<li>buckets
-: <a class="el" href="namespaceprofiler.html#afc9a352239240fe921860cfaba7fea42">profiler</a>
-</li>
-<li>build_path()
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-</li>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/namespacemembers_c.html b/html/namespacemembers_c.html
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-<title>Stellarator-Tools: Namespace Members</title>
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-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_c"></a>- c -</h3><ul>
-<li>cart_to_cyl()
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-<li>cg_rot_angle
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-</li>
-<li>cg_rot_theta
-: <a class="el" href="namespacev3rfun__input.html#a12efedfa0e0967859ada4a522f2cc7c8">v3rfun_input</a>
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-</li>
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-: <a class="el" href="namespacev3fit__input.html#a6eca729d3823689fab757e1a110b83f5">v3fit_input</a>
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-<li>coosig_wgts_id
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-</li>
-<li>copy_file()
-: <a class="el" href="namespacefile__opts.html#a075d04f0f20493be9b1f3cc8f750e51d">file_opts</a>
-</li>
-<li>create_directory()
-: <a class="el" href="namespacefile__opts.html#aa038029606ef34c059b42be25c60c6e8">file_opts</a>
-</li>
-<li>curl_ftoh()
-: <a class="el" href="namespaceutilities.html#a020ef8a2392cbc73ff8f3ffdb0ec2b24">utilities</a>
-</li>
-<li>curl_htof()
-: <a class="el" href="namespaceutilities.html#a4c9976c2bc582dc3d1eaa214623e4311">utilities</a>
-</li>
-<li>curl_htof_targ()
-: <a class="el" href="namespaceutilities.html#acd65733c2b544b3a4c4e593b8b45ff32">utilities</a>
-</li>
-<li>curla_pchelms()
-: <a class="el" href="namespacepchelms.html#aec5cddc82bbffdf9a2c6e96d607ba90e">pchelms</a>
-</li>
-<li>curlb()
-: <a class="el" href="namespacesiesta__currents.html#a72cc0d04e7475e53379e6a87d7e246d4">siesta_currents</a>
-</li>
-<li>curlb_pchelms()
-: <a class="el" href="namespacepchelms.html#a5c588539b11ef597d1f30c6397af78a6">pchelms</a>
-</li>
-<li>curtor
-: <a class="el" href="namespacevmec__input.html#a16e97b659b8f357262c03090ca8ae960">vmec_input</a>
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-: <a class="el" href="namespacev3fit__input.html#ad9aa4c21ac7f427d6467bea2c0d492dd">v3fit_input</a>
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-<li>cut_dg2
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-<li>cut_marg_eff
-: <a class="el" href="namespacev3fit__input.html#a403d25aae2bd98397290ca374a793c95">v3fit_input</a>
-</li>
-<li>cut_svd
-: <a class="el" href="namespacev3fit__input.html#ad98c066d04c0f25696a91fed7d54e8ef">v3fit_input</a>
-</li>
-<li>cv_currents()
-: <a class="el" href="namespacesiesta__currents.html#a1861d02b50c144fb6ba957bacbc6717b">siesta_currents</a>
-</li>
-<li>cyl2vmec_a()
-: <a class="el" href="namespacepchelms.html#a3e988318d4f7538797336068e91fe5fa">pchelms</a>
-</li>
-<li>cyl_to_cart()
-: <a class="el" href="namespacecoordinate__utilities.html#a51949672f1c2a60753327fa3f40a4d4c">coordinate_utilities</a>
-</li>
-<li>cyl_to_cart_vec()
-: <a class="el" href="namespacecoordinate__utilities.html#adb7ff5eab44f20841ba5300d94aa8f93">coordinate_utilities</a>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/namespacemembers_d.html b/html/namespacemembers_d.html
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index 9f90c82..0000000
--- a/html/namespacemembers_d.html
+++ /dev/null
@@ -1,181 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<title>Stellarator-Tools: Namespace Members</title>
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
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-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-  </td>
- </tr>
- </tbody>
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-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
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-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_d"></a>- d -</h3><ul>
-<li>data_max_indices
-: <a class="el" href="namespacedata__parameters.html#a71ff4854fd6b5cf86c1c4f46a19db20c">data_parameters</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#ab8ab10ef6996756c7430cb30d6119a19">blocktridiagonalsolver</a>
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-<li>dump_b()
-: <a class="el" href="namespacepchelms.html#a11fde1f18d2db817c31be925702ca27a">pchelms</a>
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diff --git a/html/namespacemembers_e.html b/html/namespacemembers_e.html
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index 6b75fe2..0000000
--- a/html/namespacemembers_e.html
+++ /dev/null
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
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-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-
-<h3><a id="index_e"></a>- e -</h3><ul>
-<li>e_pressure_fraction
-: <a class="el" href="namespacev3fit__input.html#a5ed8f65dd06c73918ebfa04ede7b5fb1">v3fit_input</a>
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-</li>
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-: <a class="el" href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">equilibrium</a>
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-<li>equilibrium_get_con_surface_kphigrid()
-: <a class="el" href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">equilibrium</a>
-</li>
-<li>equilibrium_get_con_surface_krgrid()
-: <a class="el" href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">equilibrium</a>
-</li>
-<li>equilibrium_get_con_surface_kzgrid()
-: <a class="el" href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">equilibrium</a>
-</li>
-<li>equilibrium_get_ext_b_plasma()
-: <a class="el" href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">equilibrium</a>
-</li>
-<li>equilibrium_get_ext_currents()
-: <a class="el" href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ne_ij()
-: <a class="el" href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ne_num_hyper_param()
-: <a class="el" href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ne_pi()
-: <a class="el" href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ne_pp()
-: <a class="el" href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_sxrem_ij()
-: <a class="el" href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_sxrem_num_hyper_param()
-: <a class="el" href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_sxrem_pi()
-: <a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_sxrem_pp()
-: <a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_te_ij()
-: <a class="el" href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_te_num_hyper_param()
-: <a class="el" href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_te_pi()
-: <a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_te_pp()
-: <a class="el" href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ti_ij()
-: <a class="el" href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ti_num_hyper_param()
-: <a class="el" href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ti_pi()
-: <a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium</a>
-</li>
-<li>equilibrium_get_gp_ti_pp()
-: <a class="el" href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">equilibrium</a>
-</li>
-<li>equilibrium_get_grid_size()
-: <a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium</a>
-</li>
-<li>equilibrium_get_grid_start()
-: <a class="el" href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">equilibrium</a>
-</li>
-<li>equilibrium_get_grid_stop()
-: <a class="el" href="namespaceequilibrium.html#a59825e329aec07515b5ebedf413a2ff4">equilibrium</a>
-</li>
-<li>equilibrium_get_int_b_dphi()
-: <a class="el" href="namespaceequilibrium.html#a1c72df061afb532ff36b388f652f08c9">equilibrium</a>
-</li>
-<li>equilibrium_get_magnetic_volume_jphigrid()
-: <a class="el" href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">equilibrium</a>
-</li>
-<li>equilibrium_get_magnetic_volume_jrgrid()
-: <a class="el" href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">equilibrium</a>
-</li>
-<li>equilibrium_get_magnetic_volume_jzgrid()
-: <a class="el" href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">equilibrium</a>
-</li>
-<li>equilibrium_get_magnetic_volume_rgrid()
-: <a class="el" href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">equilibrium</a>
-</li>
-<li>equilibrium_get_magnetic_volume_zgrid()
-: <a class="el" href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">equilibrium</a>
-</li>
-<li>equilibrium_get_ne_af()
-: <a class="el" href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">equilibrium</a>
-</li>
-<li>equilibrium_get_ne_cart()
-: <a class="el" href="namespaceequilibrium.html#a60b8c388b37c1b3d70e7b04e4bad489e">equilibrium</a>
-</li>
-<li>equilibrium_get_ne_radial()
-: <a class="el" href="namespaceequilibrium.html#af3822a738d14872a1c63368f209493b1">equilibrium</a>
-</li>
-<li>equilibrium_get_p_cart()
-: <a class="el" href="namespaceequilibrium.html#a7a63ef3e466a352bb9b1e36673f07daf">equilibrium</a>
-</li>
-<li>equilibrium_get_p_radial()
-: <a class="el" href="namespaceequilibrium.html#a919f2f345ba01dc5c557c50f69c17227">equilibrium</a>
-</li>
-<li>equilibrium_get_param_id()
-: <a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium</a>
-</li>
-<li>equilibrium_get_param_name()
-: <a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium</a>
-</li>
-<li>equilibrium_get_param_value()
-: <a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium</a>
-</li>
-<li>equilibrium_get_plasma_edge()
-: <a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium</a>
-</li>
-<li>equilibrium_get_sxrem_af()
-: <a class="el" href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">equilibrium</a>
-</li>
-<li>equilibrium_get_sxrem_cart()
-: <a class="el" href="namespaceequilibrium.html#a4f0300c0005dac19977a8e5577cdb3d4">equilibrium</a>
-</li>
-<li>equilibrium_get_sxrem_radial()
-: <a class="el" href="namespaceequilibrium.html#ab11a58272050c4781b094ac7dd37fa57">equilibrium</a>
-</li>
-<li>equilibrium_get_te_af()
-: <a class="el" href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">equilibrium</a>
-</li>
-<li>equilibrium_get_te_cart()
-: <a class="el" href="namespaceequilibrium.html#afa991dfc32d3ade420caa527fc14acf5">equilibrium</a>
-</li>
-<li>equilibrium_get_te_radial()
-: <a class="el" href="namespaceequilibrium.html#a3428a3b6b5837e711921ebe3fceaf412">equilibrium</a>
-</li>
-<li>equilibrium_get_ti_af()
-: <a class="el" href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">equilibrium</a>
-</li>
-<li>equilibrium_get_ti_cart()
-: <a class="el" href="namespaceequilibrium.html#a1d4c6548457108373fe2e9daee2f1f14">equilibrium</a>
-</li>
-<li>equilibrium_get_ti_radial()
-: <a class="el" href="namespaceequilibrium.html#acb7c48ff5b0f7db28ffb917ca51beb4f">equilibrium</a>
-</li>
-<li>equilibrium_get_type()
-: <a class="el" href="namespaceequilibrium.html#a817f1fd0217a2fe0774efcfebbbbc72c">equilibrium</a>
-</li>
-<li>equilibrium_get_volume_int_element()
-: <a class="el" href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">equilibrium</a>
-</li>
-<li>equilibrium_is_2d_array()
-: <a class="el" href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">equilibrium</a>
-</li>
-<li>equilibrium_is_recon_param()
-: <a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium</a>
-</li>
-<li>equilibrium_is_scaler_value()
-: <a class="el" href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">equilibrium</a>
-</li>
-<li>equilibrium_is_using_point()
-: <a class="el" href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">equilibrium</a>
-</li>
-<li>equilibrium_read_vac_file()
-: <a class="el" href="namespaceequilibrium.html#af19a9f34a7786fd3cb34acf466c50d5f">equilibrium</a>
-</li>
-<li>equilibrium_reset_state()
-: <a class="el" href="namespaceequilibrium.html#a032df1c41a8aa23eb9b8d7434118a472">equilibrium</a>
-</li>
-<li>equilibrium_restart()
-: <a class="el" href="namespaceequilibrium.html#a5d4f0e13ecadfc197de9c0c4efa47033">equilibrium</a>
-</li>
-<li>equilibrium_save_state()
-: <a class="el" href="namespaceequilibrium.html#a53216bd25b330737a77a7638a9e43303">equilibrium</a>
-</li>
-<li>equilibrium_set_magnetic_cache_point()
-: <a class="el" href="namespaceequilibrium.html#a071ab01f0bd3d33683db0e9f642e3d8a">equilibrium</a>
-</li>
-<li>equilibrium_set_magnetic_cache_response()
-: <a class="el" href="namespaceequilibrium.html#aa87a9dd2aa8a5b0efa749d566b57510b">equilibrium</a>
-</li>
-<li>equilibrium_set_param()
-: <a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium</a>
-</li>
-<li>equilibrium_sync_child()
-: <a class="el" href="namespaceequilibrium.html#a2703de0db0bd4621825db0849e8c4521">equilibrium</a>
-</li>
-<li>equilibrium_sync_state()
-: <a class="el" href="namespaceequilibrium.html#a90f3a500648b3d3540493782df9f29c7">equilibrium</a>
-</li>
-<li>equilibrium_write()
-: <a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium</a>
-</li>
-<li>equilibrium_write_init_data()
-: <a class="el" href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">equilibrium</a>
-</li>
-<li>equilibrium_write_input()
-: <a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium</a>
-</li>
-<li>equilibrium_write_step_data()
-: <a class="el" href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">equilibrium</a>
-</li>
-<li>eta_factor
-: <a class="el" href="namespacesiesta__namelist.html#a5c34fd50cada7045ae178a8fb1b2d259">siesta_namelist</a>
-</li>
-<li>etak_tol
-: <a class="el" href="namespaceshared__data.html#ad1644f3c84ff72f6f26e72243bfc2755">shared_data</a>
-</li>
-<li>ev_per_joule
-: <a class="el" href="namespacemodel.html#adee0096c51cfba8e688b2e2f073ec866">model</a>
-</li>
-<li>extcur
-: <a class="el" href="namespacevacuum__input.html#a63364fb21724c5c5b6a62c787b455e12">vacuum_input</a>
-, <a class="el" href="namespacevmec__input.html#a5e0be1292a877581ba37d1de76d70f92">vmec_input</a>
-</li>
-<li>extcurz_construct()
-: <a class="el" href="namespaceextcurz.html#a3e11ae09f2000689c4358cda7080e6e4">extcurz</a>
-</li>
-<li>extcurz_destruct()
-: <a class="el" href="namespaceextcurz.html#a64fa2ba707e4d8779a502a602b8218a7">extcurz</a>
-</li>
-<li>extcurz_get_modeled_signal()
-: <a class="el" href="namespaceextcurz.html#a9b24c42a5f7fe364a234534689209c0a">extcurz</a>
-</li>
-<li>extcurz_get_type()
-: <a class="el" href="namespaceextcurz.html#a4a5a26b8596d79e2a898350fd5ec3aeb">extcurz</a>
-</li>
-<li>extcurz_s0
-: <a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">v3fit_input</a>
-</li>
-<li>extcurz_u0
-: <a class="el" href="namespacev3fit__input.html#a555584a3df19eb60f116d9f7a9bc4211">v3fit_input</a>
-</li>
-<li>extractsubmatrix()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#aef94ff60b14016eb580d9873bf41cfeb">blocktridiagonalsolver</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/namespacemembers_f.html b/html/namespacemembers_f.html
deleted file mode 100644
index 181527a..0000000
--- a/html/namespacemembers_f.html
+++ /dev/null
@@ -1,219 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Namespace Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
-</head>
-<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-$(function() {
-  initMenu('',true,false,'search.php','Search');
-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */</script>
-<div id="main-nav"></div>
-</div><!-- top -->
-<!-- window showing the filter options -->
-<div id="MSearchSelectWindow"
-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
-
-<!-- iframe showing the search results (closed by default) -->
-<div id="MSearchResultsWindow">
-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_f"></a>- f -</h3><ul>
-<li>f1dim()
-: <a class="el" href="namespacef1dim__mod.html#a32677951f93f78c96afde793fe8f9072">f1dim_mod</a>
-</li>
-<li>f_con
-: <a class="el" href="namespacefourier.html#ae0023db38a18486c4716f09578cb71b8">fourier</a>
-</li>
-<li>f_cos
-: <a class="el" href="namespacefourier.html#a41e6c5528ec17d73f36345622667c8ae">fourier</a>
-</li>
-<li>f_ds
-: <a class="el" href="namespacefourier.html#ac353df5825590202d5c7a2de3688e5f0">fourier</a>
-</li>
-<li>f_du
-: <a class="el" href="namespacefourier.html#a60bc38ec9f367c4b73bc5badbcc3d0a7">fourier</a>
-</li>
-<li>f_dudv
-: <a class="el" href="namespacefourier.html#a380aa7707832d4030eccb0830068948d">fourier</a>
-</li>
-<li>f_dv
-: <a class="el" href="namespacefourier.html#aed197cd20f5735b408f831cf2f9b3799">fourier</a>
-</li>
-<li>f_jac
-: <a class="el" href="namespacefourier.html#afa7de072427fc6454e37458d7680f172">fourier</a>
-</li>
-<li>f_none
-: <a class="el" href="namespacefourier.html#aef77174c15ce7415c96e6098a2b77156">fourier</a>
-</li>
-<li>f_sin
-: <a class="el" href="namespacefourier.html#ae4d54d71b6f5a2a4ca9816d41b15136c">fourier</a>
-</li>
-<li>f_sum
-: <a class="el" href="namespacefourier.html#a35531eaf8acef68309d9ac9470dda0bc">fourier</a>
-</li>
-<li>faraday()
-: <a class="el" href="namespacesiesta__bfield.html#ac0677342d8babf563e008e6604c5f2db">siesta_bfield</a>
-</li>
-<li>fgiveup
-: <a class="el" href="namespacevmec__input.html#a6a4752f44aa411ed9e9cb05cc0b4e676">vmec_input</a>
-</li>
-<li>filename_base()
-: <a class="el" href="namespacedata__parameters.html#aef2c3fbb620ec73a343d52400c790d6b">data_parameters</a>
-</li>
-<li>finalize()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ad604bc79863a76dce3f4d2c73fea6284">blocktridiagonalsolver</a>
-, <a class="el" href="namespaceblocktridiagonalsolver__s.html#a3af7d5a559d6310897c17c4403d3e32b">blocktridiagonalsolver_s</a>
-</li>
-<li>fl()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ac5d364baaf41b6def1c0ab05459036a6">blocktridiagonalsolver</a>
-</li>
-<li>fletcher_reeves()
-: <a class="el" href="namespacef1dim__mod.html#a2a65481cee519ad72674cee95c616865">f1dim_mod</a>
-</li>
-<li>forwardsolve()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a71c7cd77b88f69d66d1f8530da364d37">blocktridiagonalsolver</a>
-, <a class="el" href="namespaceblocktridiagonalsolver__s.html#a6af7ba06cb1dd0dd3343ac1bf5d70425">blocktridiagonalsolver_s</a>
-</li>
-<li>forwardupdateb()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ae6f08183c5553e738dee3cffa5210dd5">blocktridiagonalsolver</a>
-</li>
-<li>fourier_construct()
-: <a class="el" href="namespacefourier.html#ae8eaa592cc2946be1c464738f6d41b59">fourier</a>
-</li>
-<li>fourier_context
-: <a class="el" href="namespaceisland__params.html#a24c8539d3e62a5cf926144ce7722c53e">island_params</a>
-</li>
-<li>fourier_destruct()
-: <a class="el" href="namespacefourier.html#a35c0f441cadb0006a1d10031283535a8">fourier</a>
-</li>
-<li>fourier_get_index()
-: <a class="el" href="namespacefourier.html#ab15e4ffa2fcfa91b1b7372684bbfc30a">fourier</a>
-</li>
-<li>fourier_get_origin()
-: <a class="el" href="namespacefourier.html#af88798b860cb38f460b0e167de3de12b">fourier</a>
-</li>
-<li>fourier_round_trig()
-: <a class="el" href="namespacefourier.html#aed046e4607a3671eb9be0c2ef2a375eb">fourier</a>
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-: <a class="el" href="namespaceequilibrium.html#aa7f1ca9df542f741d351f60074e38fdd">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">equilibrium</a>
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-: <a class="el" href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">equilibrium</a>
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-<li>extractsubmatrix()
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-: <a class="el" href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a363671f9a484fec5eaafa6dc4dddc927">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ae5a15e82b88abb835199195da719b0be">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__namelist.html#a3b21b61be1715b54e98f9b9cef8dc068">siesta_namelist</a>
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-: <a class="el" href="namespacesiesta__namelist.html#a3337260f4eaa82a64058d6972453c294">siesta_namelist</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__run.html#a3de6a89dbe0332b6e36726df6446586a">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a1c33afffa76a39261bbb967b49e31ffb">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a39f2be7bdf0394de83c9d366dbd3edac">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">siesta_run</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aeacc50357fd0c9adb56459a920dbd7b0">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a77a4b6ce278dd903391c0844177c3b1c">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a47aea8cfcb70b39596d19b886868b2ab">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a432010063648140fa8fd9d7e1ede2b84">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a8486d2a9e57e0bd50fde6cfe47d58574">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">siesta_equilibrium</a>
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-: <a class="el" href="namespacesignal.html#ab47bf869dfd033fb409ac003544e8358">signal</a>
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-: <a class="el" href="namespacesignal.html#ae2cd6f03b302cf8843b0b267fe9d5357">signal</a>
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-: <a class="el" href="namespacesignal.html#ae4badcabc7bfbbee8c7d475fee1e7b17">signal</a>
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-: <a class="el" href="namespacesignal__dot.html#a24c6b1e73138a01651492112d6642478">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#af6a352119d390bb53af1ec067116985a">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a9783bf334750181d119f4412df80432b">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a17f2a2b14dacee16bac7bbcaf08b84e6">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a34bd4229520ce6a2c1eba033af9e35ec">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#ace53c655a3df5ef8f8bc9ed7b7c73d9e">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a0340c861c809b372b3c695ba6cc18dd0">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a7a217a918db0cbfc6a70fcf154ab5f00">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#aac010e76ddd53d36c8af35230563bb10">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a8a1acba32c7f056690c7ce446ff83625">signal_dot</a>
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-: <a class="el" href="namespacesignal.html#aa0480190087d9d45e35ec9e9b345ef6d">signal</a>
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-: <a class="el" href="namespacesignal.html#af8b5017e0bb197117d7bdcba69603d3f">signal</a>
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-: <a class="el" href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">signal</a>
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-: <a class="el" href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">signal</a>
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-: <a class="el" href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">signal</a>
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-: <a class="el" href="namespacesignal.html#acbe0039aa08ce6ffc1a7ffc19c64f3e5">signal</a>
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-: <a class="el" href="namespacesignal.html#a25e264489ca9153afdb805417a7e52fe">signal</a>
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-: <a class="el" href="namespacesignal.html#a9f5b5cd4713e9e7d71a3f7ef772d8621">signal</a>
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-: <a class="el" href="namespacesignal.html#afad11360e689ce7c9e3cad4431035bd7">signal</a>
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-: <a class="el" href="namespacesignal.html#aebf5d5f26bb348c2df6bedf295718d77">signal</a>
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-: <a class="el" href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">signal</a>
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-: <a class="el" href="namespacesignal.html#a50e9ee1ee19308a6af369824194e64ac">signal</a>
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-: <a class="el" href="namespacesignal.html#a9fc88234ff148a7c67bdd1d9fb9be520">signal</a>
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-: <a class="el" href="namespacesignal.html#ade7bed9871394e4ee815fb072eb01d53">signal</a>
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-: <a class="el" href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">signal</a>
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-: <a class="el" href="namespacesignal.html#a134a194f6b48255f8a6b4673ef374c47">signal</a>
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-: <a class="el" href="namespacesignal.html#ad5d55541768dea04da2727deee1c7c10">signal</a>
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-: <a class="el" href="namespacesignal.html#ae40bcae556e7b36ae9159493e0a3370d">signal</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#af60e3498e613809ab7d64be615a5199f">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a69a130f600c36b578283d554470281b0">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a0c3721fec40f9d978411edbf72e625fb">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a810b66fe20ac19ecb60ad5cb69fffc55">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a61990d564e45776343ea6b18264c57bd">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#add37d98c9fd09ce4af1982d72171bb49">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#adeae9a542ea1c402b75ab25df9bffecd">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a335496b154f599f24d175df560ca2427">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a349b2b95e02c0666aae873e0fe6a1d31">blocktridiagonalsolver</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a96b1398020ce783b2e0b9851f4a8d69c">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a7fa92007d385a9156455550ccc906802">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#ad45ccc6137e6ab41eb9d99dbbd3b3bcf">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a4a90f6e19171fca674df6d5069002f6d">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a312a118e86c345c4ec08108dc2c91cfe">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a0cb64c12a1f73243c9c03df1ecb7d279">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a4f73459e1dc91ea0dff4b8832dc9aa69">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#af7916005e2330405b3395eeca4bcd405">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__context.html#a69e617187f07b0acfd25327aed343587">surface_context</a>
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-: <a class="el" href="namespacesurface__context.html#abd945f01c2af536ec0778af571c5682c">surface_context</a>
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-: <a class="el" href="namespacesurface__context.html#a3c4eac39b1bf2f652e0af1b996ade606">surface_context</a>
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-: <a class="el" href="namespacemetrics.html#ac8cac1820c5ff7ecff72e9527f577e9e">metrics</a>
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-: <a class="el" href="namespacef1dim__mod.html#a64bd9aedca0738ede1633383485f4d01">f1dim_mod</a>
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-: <a class="el" href="namespacesxrch__dot.html#a71b4b250f369c685b3d3aaf2bd5c5ba6">sxrch_dot</a>
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-: <a class="el" href="namespacesxrch__dot.html#a1d1c61c5ce3570230efbc3dade765cba">sxrch_dot</a>
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-: <a class="el" href="namespacesxrem.html#a7951a757a028449cccdc36353c29715b">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a83c285e77bb9794da47b0a4bace0501a">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a3504d2727f12e9edcc8589f775e81aac">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a975b531b2db7f039c05543d060157668">sxrem</a>
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-<li>sxrem_emiss_get_gp_s()
-: <a class="el" href="namespacesxrem.html#aa598fc2540cf0db5055533dacff48fb9">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a2afcf039fae9ddf05156f09a39a34d2d">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a2be6f71767386367f40d12673d18a0b3">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#aba6707e07b7c065e4efc90e3f25cbfd0">sxrem</a>
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-: <a class="el" href="namespacesxrem__ratio.html#a6a7803b872fb585e2d54e6308e481938">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem__ratio.html#ade9268caf165fd7b6d80bdc3c1862277">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem__ratio__dot.html#af8bab8b0e2f8f538b13b74531db89560">sxrem_ratio_dot</a>
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-: <a class="el" href="namespacesxrem__ratio__dot.html#ad759c01e4c13062892dd26b649ce2b64">sxrem_ratio_dot</a>
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-: <a class="el" href="namespacesxrem__ratio.html#abdecaf456c565af7a11370e466dc90ae">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem__ratio.html#a8bd12c0a8d0c7f290f978e4059f7dd28">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem__ratio.html#a3334120e426e0f3524887db26808b269">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem__ratio.html#ac58b81566f9518d74dea9bedf069cacf">sxrem_ratio</a>
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-: <a class="el" href="namespacesxrem.html#a0f725023edd776ab35b1d69a75f77d88">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a98b972d24c615950906e2069b9c4f8ae">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a2d6df79edd9ff1537a1e94f4e4b0d442">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a011d9eb650506dd013a3d3bc1bca96e5">sxrem</a>
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-: <a class="el" href="namespacesxrem.html#a06ff81f3a17713d6e579a7ab928f40f4">sxrem</a>
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-: <a class="el" href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">vmec_equilibrium</a>
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-<li>vmec_get_sxrem_radial()
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-: <a class="el" href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">vmec_equilibrium</a>
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-: <a class="el" href="namespacevmec__equilibrium.html#a355d774feafc69fda582d6fe0269b828">vmec_equilibrium</a>
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-: <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_equilibrium</a>
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-: <a class="el" href="namespacevmec__equilibrium.html#ac1c8619aa312f52d85ac59c1ee0befe8">vmec_equilibrium</a>
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-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-$(function() {
-  initMenu('',true,false,'search.php','Search');
-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */</script>
-<div id="main-nav"></div>
-</div><!-- top -->
-<!-- window showing the filter options -->
-<div id="MSearchSelectWindow"
-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
-
-<!-- iframe showing the search results (closed by default) -->
-<div id="MSearchResultsWindow">
-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_l"></a>- l -</h3><ul>
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-</li>
-<li>l_force_restart
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-</li>
-<li>l_getfsq
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-</li>
-<li>l_getwmhd
-: <a class="el" href="namespaceshared__data.html#a8db245a5914674d3a66facf50cba3d9c">shared_data</a>
-</li>
-<li>l_init_state
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-</li>
-<li>l_lambda
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-</li>
-<li>l_linearize
-: <a class="el" href="namespaceshared__data.html#a6545c83fcebbb90a389e3046ca3cd2f6">shared_data</a>
-</li>
-<li>l_natural
-: <a class="el" href="namespaceshared__data.html#aab682fd7d88c625f78ccf2c0b6faa0c7">shared_data</a>
-</li>
-<li>l_output_alliter
-: <a class="el" href="namespacesiesta__namelist.html#a862817756335c5f140475c535775ae6b">siesta_namelist</a>
-</li>
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-, <a class="el" href="namespacevacuum__input.html#a6c2b060a86eefcadf7256ffc7f33af12">vacuum_input</a>
-</li>
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-: <a class="el" href="namespacesiesta__namelist.html#a83d92599194e6e14d6f17582ad93be35">siesta_namelist</a>
-</li>
-<li>l_silo_output
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-</li>
-<li>l_tracing
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-</li>
-<li>l_update_state
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-</li>
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-</li>
-<li>l_vessel
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-</li>
-<li>l_zero_xcdot
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-</li>
-<li>ladd_pert
-: <a class="el" href="namespacesiesta__namelist.html#a74f4a611349b2a1a425613c724b56519">siesta_namelist</a>
-</li>
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-, <a class="el" href="namespacevmec__input.html#aa44376c0bdcded8b56e0fe70c11c6553">vmec_input</a>
-</li>
-<li>lbsubs
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-<li>ldiagno
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-</li>
-<li>lgiveup
-: <a class="el" href="namespacevmec__input.html#a12e6ea94c7c9767b9b080367fbbd7d58">vmec_input</a>
-</li>
-<li>lif_arz
-: <a class="el" href="namespacev3fit__input.html#a3cdeac24ffe859cc7d02ce89e50cbb0b">v3fit_input</a>
-</li>
-<li>lif_on_edge
-: <a class="el" href="namespacev3fit__input.html#ad059df5d621362dfaec5d6a863fe7fce">v3fit_input</a>
-</li>
-<li>lif_phi_degree
-: <a class="el" href="namespacev3fit__input.html#a37c539b1ed29562125f0931762de7835">v3fit_input</a>
-</li>
-<li>lif_rc
-: <a class="el" href="namespacev3fit__input.html#a4c7b9c1bb980f6d66aa1e7114aca0a2c">v3fit_input</a>
-</li>
-<li>lif_sigma
-: <a class="el" href="namespacev3fit__input.html#a1c59562442dd0357a132744ea7bfb93c">v3fit_input</a>
-</li>
-<li>lif_zc
-: <a class="el" href="namespacev3fit__input.html#a302b7767d09f14ef9b7432faec8f485d">v3fit_input</a>
-</li>
-<li>limiter_destruct()
-: <a class="el" href="namespacelimiter.html#aa44dc38dfbefb7c21d280e0ec4ed74ff">limiter</a>
-</li>
-<li>limiter_get_header()
-: <a class="el" href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102">limiter</a>
-</li>
-<li>limiter_get_max_fval()
-: <a class="el" href="namespacelimiter.html#a61ed94cda09b81ca3d693d0b8a340310">limiter</a>
-</li>
-<li>limiter_get_modeled_signal()
-: <a class="el" href="namespacelimiter.html#a45aa0ac5949f3a566bad8db3bb191df1">limiter</a>
-</li>
-<li>limiter_get_type()
-: <a class="el" href="namespacelimiter.html#a8e32e4e8c7d4729044dad84771320a39">limiter</a>
-</li>
-<li>limiter_grid_construct()
-: <a class="el" href="namespacelimiter__grid.html#a1fe0dca7e422c5a64aa5e535fd0f845c">limiter_grid</a>
-</li>
-<li>limiter_grid_destruct()
-: <a class="el" href="namespacelimiter__grid.html#a9e2650f5959b58e6feb3e0c324969aea">limiter_grid</a>
-</li>
-<li>limiter_grid_file
-: <a class="el" href="namespacev3fit__input.html#aec2b0fa4f3dd7e442368fcd37fc50ed9">v3fit_input</a>
-</li>
-<li>limiter_grid_get_max_fval()
-: <a class="el" href="namespacelimiter__grid.html#ae33cdb159cc818d474e966f2a6e685c7">limiter_grid</a>
-</li>
-<li>limiter_grid_get_type()
-: <a class="el" href="namespacelimiter__grid.html#a810e388e4fd4e835269db5d0e0a1b738">limiter_grid</a>
-</li>
-<li>limiter_iso_construct()
-: <a class="el" href="namespacelimiter__iso__t.html#ae93df12beb723f9884e18937f4312dab">limiter_iso_t</a>
-</li>
-<li>limiter_iso_destruct()
-: <a class="el" href="namespacelimiter__iso__t.html#ac3948b7d4d4f033c6f09f60150ed0726">limiter_iso_t</a>
-</li>
-<li>limiter_iso_get_max_fval()
-: <a class="el" href="namespacelimiter__iso__t.html#a0b757e7a9b05ec278334560651aecf13">limiter_iso_t</a>
-</li>
-<li>limiter_iso_get_type()
-: <a class="el" href="namespacelimiter__iso__t.html#a74d3b2f52f4049c50a9cf8939aa6cacf">limiter_iso_t</a>
-</li>
-<li>limiter_iso_get_value()
-: <a class="el" href="namespacelimiter__iso__t.html#a267ecdcac3da0fe68e4d02bb4587c5e1">limiter_iso_t</a>
-</li>
-<li>line_seg()
-: <a class="el" href="namespaceline__segment.html#aa63bfde0ff39e19622f7f5fe150e8b59">line_segment</a>
-</li>
-<li>line_seg_int()
-: <a class="el" href="namespaceline__segment.html#a5686dda904eede25b04410ebada585d3">line_segment</a>
-</li>
-<li>line_seg_test()
-: <a class="el" href="namespaceline__segment.html#ad646e194dc6269ad6d052e6a7689b7c8">line_segment</a>
-</li>
-<li>linesearch()
-: <a class="el" href="namespaceshared__functions.html#a61e8b9047c8d56be66ec7ff0c7ca38c4">shared_functions</a>
-</li>
-<li>linmin()
-: <a class="el" href="namespacef1dim__mod.html#a692c8e58cc18aa004a0e708a3fa77100">f1dim_mod</a>
-</li>
-<li>lmac
-: <a class="el" href="namespacevmec__input.html#aeee8ba3ec36bdee5af9386d3c974217c">vmec_input</a>
-</li>
-<li>lmoreiter
-: <a class="el" href="namespacevmec__input.html#a8dfe78adf3e53e4f56062995ed5d9096">vmec_input</a>
-</li>
-<li>lmove_axis
-: <a class="el" href="namespacevmec__input.html#a2da0ad312394672956e0fcae3c1e562f">vmec_input</a>
-</li>
-<li>lnyquist
-: <a class="el" href="namespacevmec__input.html#a5edab550626b061c25f8f9cee7ff4984">vmec_input</a>
-</li>
-<li>loadgrid()
-: <a class="el" href="namespacemetrics.html#a84a2b82f878c4e2382d40aca99427022">metrics</a>
-</li>
-<li>loctimer2
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a908d5a58af7c99d60b58e3ea38cd265f">blocktridiagonalsolver</a>
-</li>
-<li>loldout
-: <a class="el" href="namespacevmec__input.html#ab151be07a1d183aa2b518ad3de7c9aa2">vmec_input</a>
-</li>
-<li>long_name
-: <a class="el" href="namespacevmec__input.html#a8e3b4d7746677172320871aa9d32b9c0">vmec_input</a>
-</li>
-<li>lorentz()
-: <a class="el" href="namespacesiesta__force.html#a89d3a3e49372864458cb7f9aa83b7712">siesta_force</a>
-</li>
-<li>lp_index
-: <a class="el" href="namespacev3fit__input.html#addec141a80c9f49c9ab6f07c673e1348">v3fit_input</a>
-</li>
-<li>lp_index2
-: <a class="el" href="namespacev3fit__input.html#ab9fa5501afe4180f079943391a110241">v3fit_input</a>
-</li>
-<li>lp_sets
-: <a class="el" href="namespacev3fit__input.html#a2a6b52611571eb12a99cf08bb36160a1">v3fit_input</a>
-</li>
-<li>lp_sets_coeff
-: <a class="el" href="namespacev3fit__input.html#a247aa2d91b019cc2af097d86b400228e">v3fit_input</a>
-</li>
-<li>lp_sets_index
-: <a class="el" href="namespacev3fit__input.html#a38c02cb03f69ba62fffd17714561bee0">v3fit_input</a>
-</li>
-<li>lp_sets_index2
-: <a class="el" href="namespacev3fit__input.html#a01e2fa62a9ee2f8233055d811fa0a8ef">v3fit_input</a>
-</li>
-<li>lp_type
-: <a class="el" href="namespacev3fit__input.html#a573efd2e66f6513ec56822452cd0412c">v3fit_input</a>
-</li>
-<li>lr2gr()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a88e831d590eb7abac76c038a2af00fe6">blocktridiagonalsolver</a>
-</li>
-<li>lr2rank()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ac0e2835282996e621ad51a99d16a0a54">blocktridiagonalsolver</a>
-</li>
-<li>lrecon
-: <a class="el" href="namespaceshared__data.html#af01f56f0921599e96571e9dd049f01c1">shared_data</a>
-</li>
-<li>lresistive
-: <a class="el" href="namespacesiesta__namelist.html#ad156dc8c98ae58ca02dc697f4f48cb41">siesta_namelist</a>
-</li>
-<li>lrestart
-: <a class="el" href="namespacesiesta__namelist.html#a33133507bba1231bc8ceaaa642281d27">siesta_namelist</a>
-</li>
-<li>lrfp
-: <a class="el" href="namespacevmec__input.html#a10a6fb946588f8a10c060c4fa118b01a">vmec_input</a>
-</li>
-<li>lstell_sym
-: <a class="el" href="namespacev3rfun__input.html#aaf6aafef6d51f4a72f0516bf3808869f">v3rfun_input</a>
-</li>
-<li>lverbose
-: <a class="el" href="namespaceshared__data.html#af78dd6d0a26be60058238092f6adf7ad">shared_data</a>
-</li>
-<li>lwouttxt
-: <a class="el" href="namespacevmec__input.html#aeb2595dff475888cae197b2514466c94">vmec_input</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
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diff --git a/html/namespacemembers_m.html b/html/namespacemembers_m.html
deleted file mode 100644
index 9cfeef5..0000000
--- a/html/namespacemembers_m.html
+++ /dev/null
@@ -1,620 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
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-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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-<title>Stellarator-Tools: Namespace Members</title>
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-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
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-<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
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-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
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-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_m"></a>- m -</h3><ul>
-<li>m
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a6d10ffb2eacdd848d494eb376d1d9a66">blocktridiagonalsolver</a>
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-: <a class="el" href="namespacefourier.html#ac7378da676474b8d8356fafd8176f194">fourier</a>
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-: <a class="el" href="namespacefourier.html#a3a590891f5c6ddc4bb6849e9f3814d65">fourier</a>
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-: <a class="el" href="namespacev3fit__input.html#a04e50a0867d3787d072dabe967abb864">v3fit_input</a>
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-: <a class="el" href="namespacev3fit__input.html#ab411452479e901a79f09ae2361bebd2b">v3fit_input</a>
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-: <a class="el" href="namespacev3fit__input.html#aa1a2082e5115ba5f13f6bf31e5f2014a">v3fit_input</a>
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-: <a class="el" href="namespacev3fit__input.html#ae304f641e15cd1885631abf6d2efe1af">v3fit_input</a>
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-: <a class="el" href="namespacemagnetic.html#a7e2ec298bb1b6eed9875fc7cb944b429">magnetic</a>
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-: <a class="el" href="namespacemagnetic.html#ae0292ac383a7c465f2d946c13361f901">magnetic</a>
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-: <a class="el" href="namespacemagnetic__response.html#a98b69bdb70e180a00540a91de0972dd4">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a8a3c69caf524992b84c1c81f875e3d02">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a285dfc0eaaf62c559d708dbbf96be7fb">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#ac682e9802057231ed94d61dad4d3f4fe">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#ab85fa1592305f7e52be21ad25cb5d007">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a2fb61c92491193e14b707f8e3ae02790">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a0a6faca573822aa7a36c85d67436bb20">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a70fb1c99952e833eab598120232b2be6">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#aee85d86f3ec99cc3e28bad6f24d6683b">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#ae503fd44115e43936e270762af3c9c76">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a10943ec3427fe606cf61e09ad709aaf9">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a8808835831253f96bffea0f6ffe605a2">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#aaeb6da528af6df184173324b8b1c33ed">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a72e86e40fced0ed47954541307e4a4a5">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a093388178841979640266142545c52ec">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a431c04b753028230aa2aee51de6f7c87">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#a618b82f71541810b185f0b2eea7cd63a">magnetic_response</a>
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-: <a class="el" href="namespacemagnetic__response.html#ade73142d3199ee5c7e944e4bed988ea3">magnetic_response</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a5ac3288f9d10057860424414c219adf2">blocktridiagonalsolver</a>
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diff --git a/html/namespacemembers_o.html b/html/namespacemembers_o.html
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<script type="text/javascript" src="dynsections.js"></script>
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-<script type="text/javascript" src="search/searchdata.js"></script>
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-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
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-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
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-<script type="text/javascript" src="menu.js"></script>
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-<!-- window showing the filter options -->
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-<li>op_none
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a611facadffee21729b3ce8a9f6067ad5">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a03155391fb02ccf64eaadc36ff197d84">blocktridiagonalsolver</a>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
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diff --git a/html/namespacemembers_p.html b/html/namespacemembers_p.html
deleted file mode 100644
index 41c32ca..0000000
--- a/html/namespacemembers_p.html
+++ /dev/null
@@ -1,492 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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- </tbody>
-</table>
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-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
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-: <a class="el" href="namespacevmec__input.html#a84667df7115cbb6867de8b6f2cb9d628">vmec_input</a>
-</li>
-<li>pol_rad_ratio
-: <a class="el" href="namespacev3fit__input.html#a7a3cf3ce87524d4a927e44343ff6690a">v3fit_input</a>
-</li>
-<li>pp_ne_af
-: <a class="el" href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">v3fit_input</a>
-</li>
-<li>pp_ne_as
-: <a class="el" href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">v3fit_input</a>
-</li>
-<li>pp_ne_b
-: <a class="el" href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">v3fit_input</a>
-</li>
-<li>pp_ne_ptype
-: <a class="el" href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">v3fit_input</a>
-</li>
-<li>pp_sxrem_af
-: <a class="el" href="namespacev3fit__input.html#a85e26804e0bad2a97fe7582c1db8768c">v3fit_input</a>
-</li>
-<li>pp_sxrem_af_a
-: <a class="el" href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">v3fit_input</a>
-</li>
-<li>pp_sxrem_as
-: <a class="el" href="namespacev3fit__input.html#ad7a27d4aa3c3a65027b34183f95533a4">v3fit_input</a>
-</li>
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-: <a class="el" href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">v3fit_input</a>
-</li>
-<li>pp_sxrem_b
-: <a class="el" href="namespacev3fit__input.html#a9cc45d9107490ae0070289782b75730c">v3fit_input</a>
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-<li>pp_sxrem_b_a
-: <a class="el" href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">v3fit_input</a>
-</li>
-<li>pp_sxrem_ptype
-: <a class="el" href="namespacev3fit__input.html#afbb75117e851be78b8e4360e7383c199">v3fit_input</a>
-</li>
-<li>pp_sxrem_ptype_a
-: <a class="el" href="namespacev3fit__input.html#ac44e39737eeaa08518fcc237d4db83ff">v3fit_input</a>
-</li>
-<li>pp_te_af
-: <a class="el" href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">v3fit_input</a>
-</li>
-<li>pp_te_as
-: <a class="el" href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">v3fit_input</a>
-</li>
-<li>pp_te_b
-: <a class="el" href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">v3fit_input</a>
-</li>
-<li>pp_te_ptype
-: <a class="el" href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">v3fit_input</a>
-</li>
-<li>pp_ti_af
-: <a class="el" href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">v3fit_input</a>
-</li>
-<li>pp_ti_as
-: <a class="el" href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">v3fit_input</a>
-</li>
-<li>pp_ti_b
-: <a class="el" href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">v3fit_input</a>
-</li>
-<li>pp_ti_ptype
-: <a class="el" href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">v3fit_input</a>
-</li>
-<li>pprofile_construct()
-: <a class="el" href="namespacepprofile__t.html#a45835368dd7de7eb34d2108fea0002c4">pprofile_t</a>
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-<li>pprofile_destruct()
-: <a class="el" href="namespacepprofile__t.html#a10f804e2272a8795fe7a843dfd4b0d63">pprofile_t</a>
-</li>
-<li>pprofile_get_gp_ij()
-: <a class="el" href="namespacepprofile__t.html#a4a8b9c655983bbaec1274a7a724f638e">pprofile_t</a>
-</li>
-<li>pprofile_get_gp_num_hyper_param()
-: <a class="el" href="namespacepprofile__t.html#a75711e82e59ad6c5fc3d9fbf6330d474">pprofile_t</a>
-</li>
-<li>pprofile_get_gp_pi()
-: <a class="el" href="namespacepprofile__t.html#a21ef1957521ac33d669105dda3c0c1a0">pprofile_t</a>
-</li>
-<li>pprofile_get_gp_pp()
-: <a class="el" href="namespacepprofile__t.html#af30a8e6d63ca54c1274afa9e0f157c08">pprofile_t</a>
-</li>
-<li>pprofile_get_p_type_name()
-: <a class="el" href="namespacepprofile__t.html#a462ecc1cd34de4137adc99ce5f409df1">pprofile_t</a>
-</li>
-<li>pprofile_get_value()
-: <a class="el" href="namespacepprofile__t.html#aeff18f2ba94083ded9d51ea20a7e8ee3">pprofile_t</a>
-</li>
-<li>pprofile_gp_1d_sqexp_k()
-: <a class="el" href="namespacepprofile__t.html#abc9605e5463c1559316fa5b38d708330">pprofile_t</a>
-</li>
-<li>pprofile_gp_1d_sqexp_ln_k()
-: <a class="el" href="namespacepprofile__t.html#a067ecbe88c417aeec34a6c034695f0ff">pprofile_t</a>
-</li>
-<li>pprofile_reset_state()
-: <a class="el" href="namespacepprofile__t.html#a57fba41e433baa71fc8a1cad5c7bb3cc">pprofile_t</a>
-</li>
-<li>pprofile_save_state()
-: <a class="el" href="namespacepprofile__t.html#af1936f32c455004fea58c096ff34824a">pprofile_t</a>
-</li>
-<li>pprofile_write()
-: <a class="el" href="namespacepprofile__t.html#a4d32fc72b372b92d05c02cf49e498003">pprofile_t</a>
-</li>
-<li>pre_niter
-: <a class="el" href="namespacevmec__input.html#a9e884375c83f4df99b09234573dae7e8">vmec_input</a>
-</li>
-<li>preblock
-: <a class="el" href="namespaceshared__data.html#a462ae7b254709bc1082d49d8b1baf0dc">shared_data</a>
-</li>
-<li>prec2d_threshold
-: <a class="el" href="namespacevmec__input.html#a3114e8b0a98ad959de2c3e0f21e32d2f">vmec_input</a>
-</li>
-<li>precon_type
-: <a class="el" href="namespacevmec__input.html#a545f7f4ae0d429daa57c4aaa43717fd9">vmec_input</a>
-</li>
-<li>prediag
-: <a class="el" href="namespaceshared__data.html#a2136a817024198f510d5cccf04244312">shared_data</a>
-</li>
-<li>pres_scale
-: <a class="el" href="namespacevmec__input.html#a462d153c6c2edf67fb5004ea31367a5c">vmec_input</a>
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-: <a class="el" href="namespaceprimed__grid.html#a11bcd75bf5333367a181bb27f7b0eb7e">primed_grid</a>
-</li>
-<li>primed_grid_construct_jv()
-: <a class="el" href="namespaceprimed__grid.html#a6cfab84b2d1a7fa7e9814a8d5d836445">primed_grid</a>
-</li>
-<li>primed_grid_construct_no_vac()
-: <a class="el" href="namespaceprimed__grid.html#a5418ac7b1982c948e232534948304c01">primed_grid</a>
-</li>
-<li>primed_grid_construct_siesta()
-: <a class="el" href="namespaceprimed__grid.html#a02df21a51214feb456ac82a14473eb64">primed_grid</a>
-</li>
-<li>primed_grid_destruct()
-: <a class="el" href="namespaceprimed__grid.html#a1d18e979c0c657b0e1e5527184387b98">primed_grid</a>
-</li>
-<li>prior_gaussian_construct()
-: <a class="el" href="namespaceprior__gaussian.html#a7d034a9e2a3cf1cd7be08e9aac69dd09">prior_gaussian</a>
-</li>
-<li>prior_gaussian_destruct()
-: <a class="el" href="namespaceprior__gaussian.html#a451bef4ea3caf5746de01d22547b12a0">prior_gaussian</a>
-</li>
-<li>prior_gaussian_get_gp_i()
-: <a class="el" href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d">prior_gaussian</a>
-</li>
-<li>prior_gaussian_get_gp_s()
-: <a class="el" href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d">prior_gaussian</a>
-</li>
-<li>prior_gaussian_get_gp_x()
-: <a class="el" href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30">prior_gaussian</a>
-</li>
-<li>prior_gaussian_get_modeled_signal()
-: <a class="el" href="namespaceprior__gaussian.html#aa2303aa811e1f1d8b44f51d38d58f8a0">prior_gaussian</a>
-</li>
-<li>prior_gaussian_get_type()
-: <a class="el" href="namespaceprior__gaussian.html#a21dc4528c76f30db022326b0f689850f">prior_gaussian</a>
-</li>
-<li>prior_gaussian_write_auxiliary()
-: <a class="el" href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8">prior_gaussian</a>
-</li>
-<li>prior_indices
-: <a class="el" href="namespacev3fit__input.html#aaf059e86644d4f94716216ee191c60b2">v3fit_input</a>
-</li>
-<li>prior_name
-: <a class="el" href="namespacev3fit__input.html#a30b5db6c5eae2374369b9be3d8b189d6">v3fit_input</a>
-</li>
-<li>prior_param_name
-: <a class="el" href="namespacev3fit__input.html#a82605442d5d24ccb42c4e0b82ca8764b">v3fit_input</a>
-</li>
-<li>prior_units
-: <a class="el" href="namespacev3fit__input.html#ada19786a1d2a3762727c1ec3c46c7e40">v3fit_input</a>
-</li>
-<li>process_dir()
-: <a class="el" href="namespacedata__parameters.html#a7cfa8da6dd006501b6c70d05b4961c14">data_parameters</a>
-</li>
-<li>profiler_bucket_size
-: <a class="el" href="namespaceprofiler.html#aa864b887a08e8026d904ade234c18b5a">profiler</a>
-</li>
-<li>profiler_construct()
-: <a class="el" href="namespaceprofiler.html#ab266b6acb4f5255931690b43d31780e5">profiler</a>
-</li>
-<li>profiler_destruct()
-: <a class="el" href="namespaceprofiler.html#a641db19a17afa3c6f3084c859aa86aa1">profiler</a>
-</li>
-<li>profiler_get_start_time()
-: <a class="el" href="namespaceprofiler.html#a36371403894ef9b960bac1e58aef5033">profiler</a>
-</li>
-<li>profiler_hash_function()
-: <a class="el" href="namespaceprofiler.html#a824701798f5229e743f741d4655526ab">profiler</a>
-</li>
-<li>profiler_set_stop_time()
-: <a class="el" href="namespaceprofiler.html#af5df6115cae0fb6066c65922c4c34240">profiler</a>
-</li>
-<li>profiler_sort()
-: <a class="el" href="namespaceprofiler.html#ac00fd28da21b60f054b396a00c6546ae">profiler</a>
-</li>
-<li>profiler_string_size
-: <a class="el" href="namespaceprofiler.html#a8198497a26b6fc30d31c623f7aee2dd3">profiler</a>
-</li>
-<li>profiler_write()
-: <a class="el" href="namespaceprofiler.html#a0770360f61f6885a34f3983a4ad9625b">profiler</a>
-</li>
-<li>progress
-: <a class="el" href="namespacebmw__state__flags.html#a0c5c129f633ed0c79ab1678b10ec4a62">bmw_state_flags</a>
-</li>
-<li>ptrsz
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ad0d69dd92fb01f15521159bf0cdafeb2">blocktridiagonalsolver</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/namespacemembers_r.html b/html/namespacemembers_r.html
deleted file mode 100644
index 1c2b736..0000000
--- a/html/namespacemembers_r.html
+++ /dev/null
@@ -1,284 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Namespace Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
-</head>
-<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
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-  initMenu('',true,false,'search.php','Search');
-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */</script>
-<div id="main-nav"></div>
-</div><!-- top -->
-<!-- window showing the filter options -->
-<div id="MSearchSelectWindow"
-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
-
-<!-- iframe showing the search results (closed by default) -->
-<div id="MSearchResultsWindow">
-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_r"></a>- r -</h3><ul>
-<li>r1_i
-: <a class="el" href="namespaceshared__data.html#a586d2f5eed2fe8372726edd47133a6c8">shared_data</a>
-</li>
-<li>r_major_radius
-: <a class="el" href="namespacev3fit__input.html#a9059b0461b1526f0b37edd0ed8471f1b">v3fit_input</a>
-</li>
-<li>radial_dim
-: <a class="el" href="namespacerestart__mod.html#a7e458e8ae5a115086ee07111bab513a3">restart_mod</a>
-</li>
-<li>raxis
-: <a class="el" href="namespacevmec__input.html#ad9fb6741e07d6096e5f29371d371b006">vmec_input</a>
-</li>
-<li>raxis_cc
-: <a class="el" href="namespacevmec__input.html#a5f70d079e39e32466979afe12ba33d72">vmec_input</a>
-</li>
-<li>raxis_cs
-: <a class="el" href="namespacevmec__input.html#a1c2b052ca3bc07f79899da911ff871c6">vmec_input</a>
-</li>
-<li>rbc
-: <a class="el" href="namespacevmec__input.html#a5b4305408517750c181d1d18d473527d">vmec_input</a>
-</li>
-<li>rbs
-: <a class="el" href="namespacevmec__input.html#acb9d53b6d51f57e1a388d7eab9507370">vmec_input</a>
-</li>
-<li>rc_index
-: <a class="el" href="namespacev3fit__input.html#a3341ca9d709df8ae0f49946bfdc5a4e4">v3fit_input</a>
-</li>
-<li>rc_type
-: <a class="el" href="namespacev3fit__input.html#a21db612f7dc38fd8a98cfce3b527c509">v3fit_input</a>
-</li>
-<li>rc_value
-: <a class="el" href="namespacev3fit__input.html#a6785668e1153612adfe5ed8676bdf289">v3fit_input</a>
-</li>
-<li>read_indata_namelist()
-: <a class="el" href="namespacevmec__input.html#a02b29863a947531e6c4e8d7c66c5a5e0">vmec_input</a>
-</li>
-<li>reconstruction_construct()
-: <a class="el" href="namespacereconstruction.html#a83008030c2512b04eb98f02af3ee7f73">reconstruction</a>
-</li>
-<li>reconstruction_destruct()
-: <a class="el" href="namespacereconstruction.html#aa851e7448de9605070f9c6f86bc917e8">reconstruction</a>
-</li>
-<li>reconstruction_eval_e()
-: <a class="el" href="namespacereconstruction.html#aebe0eed2575d30465603e1a65babbeaa">reconstruction</a>
-</li>
-<li>reconstruction_eval_f()
-: <a class="el" href="namespacereconstruction.html#a05b135cafa07fb268af718143b1045ca">reconstruction</a>
-</li>
-<li>reconstruction_eval_jacobians()
-: <a class="el" href="namespacereconstruction.html#a03f66db6b79a6227bd62cb903a4b33f9">reconstruction</a>
-</li>
-<li>reconstruction_eval_sem()
-: <a class="el" href="namespacereconstruction.html#a854eb885feba6eb040e61962347f5a1d">reconstruction</a>
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-<li>reconstruction_eval_step()
-: <a class="el" href="namespacereconstruction.html#a3e5878cd436ed7442689bb2e314d9109">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#ad06056417e4dffb8c2bb40ccb0e3284b">reconstruction</a>
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-<li>reconstruction_get_exp_dg2()
-: <a class="el" href="namespacereconstruction.html#a8f4c0528a4bc5caadd59f08eeaf2f05f">reconstruction</a>
-</li>
-<li>reconstruction_get_exp_g2()
-: <a class="el" href="namespacereconstruction.html#ab2fdf4a2adcf3f1b03537f3928e32f03">reconstruction</a>
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-<li>reconstruction_get_g2()
-: <a class="el" href="namespacereconstruction.html#aad364ff7c16ea1de63c90635257fd2dc">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#a97b9796ac7fc5280bb61f2b9142ebbee">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#aab7abf0d1ec5b8cf95f436c8fd949836">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#a93ef33f5f3c73c26a245afe2e0c42067">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">reconstruction</a>
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-: <a class="el" href="namespacereconstruction.html#a9fb4f742bf8db5975f91c4bc9285bf8a">reconstruction</a>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/namespacemembers_s.html b/html/namespacemembers_s.html
deleted file mode 100644
index 4310bf2..0000000
--- a/html/namespacemembers_s.html
+++ /dev/null
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-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Namespace Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
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-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
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-<!-- Generated by Doxygen 1.9.1 -->
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-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_s"></a>- s -</h3><ul>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a60a0c3b99f3ebabcb67039e76bb6bbb4">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a83d2f3344c9c4744e68a556b45d41f4b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a5d5fbcaffe1d49ed291648ecc24d1259">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ad68bd4d3c819bafd069caa2bb6ed6d85">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ab9d801f89b6ac53588c95898b2db119d">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a363671f9a484fec5eaafa6dc4dddc927">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ae5a15e82b88abb835199195da719b0be">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#af0ee35a1a4de414752e0d74fac846cf1">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__file.html#ab3cf2198fcaab8c8955afbc9c1481995">siesta_file</a>
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-: <a class="el" href="namespacesiesta__namelist.html#ab3be64d14a4305d9a50b52011299b300">siesta_namelist</a>
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-: <a class="el" href="namespacesiesta__namelist.html#a3b21b61be1715b54e98f9b9cef8dc068">siesta_namelist</a>
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-: <a class="el" href="namespacesiesta__namelist.html#a3337260f4eaa82a64058d6972453c294">siesta_namelist</a>
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-: <a class="el" href="namespacev3fit__input.html#afb389a447b59890dce1eddceb64cce01">v3fit_input</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">siesta_equilibrium</a>
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-: <a class="el" href="namespacev3fit__input.html#a2d40e6ec26c58cffa367843b0491d5aa">v3fit_input</a>
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-: <a class="el" href="namespacesiesta__run.html#a3de6a89dbe0332b6e36726df6446586a">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#aa2d2bc4e99ec0e6793849e2bcbb30d4b">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a3edbdc3a80b2a5c1e24606fc25eab448">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#aa3050a3f5a2791a245c899b101605239">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a1c33afffa76a39261bbb967b49e31ffb">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#a39f2be7bdf0394de83c9d366dbd3edac">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">siesta_run</a>
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-: <a class="el" href="namespacesiesta__run.html#aed7a512f2da2451105ece9eb19f43c7e">siesta_run</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aeacc50357fd0c9adb56459a920dbd7b0">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a77a4b6ce278dd903391c0844177c3b1c">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a47aea8cfcb70b39596d19b886868b2ab">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a432010063648140fa8fd9d7e1ede2b84">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a8486d2a9e57e0bd50fde6cfe47d58574">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">siesta_equilibrium</a>
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-: <a class="el" href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">siesta_equilibrium</a>
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-: <a class="el" href="namespacesignal.html#ab47bf869dfd033fb409ac003544e8358">signal</a>
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-: <a class="el" href="namespacesignal.html#ae2cd6f03b302cf8843b0b267fe9d5357">signal</a>
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-: <a class="el" href="namespacesignal.html#ae4badcabc7bfbbee8c7d475fee1e7b17">signal</a>
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-: <a class="el" href="namespacesignal__dot.html#a24c6b1e73138a01651492112d6642478">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a4424b615aa57d5f2ece45bd5feb4bf40">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#af6a352119d390bb53af1ec067116985a">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a9783bf334750181d119f4412df80432b">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a17f2a2b14dacee16bac7bbcaf08b84e6">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a34bd4229520ce6a2c1eba033af9e35ec">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#ace53c655a3df5ef8f8bc9ed7b7c73d9e">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a0340c861c809b372b3c695ba6cc18dd0">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a7a217a918db0cbfc6a70fcf154ab5f00">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#aac010e76ddd53d36c8af35230563bb10">signal_dot</a>
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-: <a class="el" href="namespacesignal__dot.html#a8a1acba32c7f056690c7ce446ff83625">signal_dot</a>
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-: <a class="el" href="namespacesignal.html#aa0480190087d9d45e35ec9e9b345ef6d">signal</a>
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-: <a class="el" href="namespacesignal.html#af8b5017e0bb197117d7bdcba69603d3f">signal</a>
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-: <a class="el" href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">signal</a>
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-: <a class="el" href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">signal</a>
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-: <a class="el" href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">signal</a>
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-: <a class="el" href="namespacesignal.html#acbe0039aa08ce6ffc1a7ffc19c64f3e5">signal</a>
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-: <a class="el" href="namespacesignal.html#a25e264489ca9153afdb805417a7e52fe">signal</a>
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-: <a class="el" href="namespacesignal.html#a9f5b5cd4713e9e7d71a3f7ef772d8621">signal</a>
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-: <a class="el" href="namespacesignal.html#afad11360e689ce7c9e3cad4431035bd7">signal</a>
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-: <a class="el" href="namespacesignal.html#aebf5d5f26bb348c2df6bedf295718d77">signal</a>
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-: <a class="el" href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">signal</a>
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-: <a class="el" href="namespacesignal.html#a50e9ee1ee19308a6af369824194e64ac">signal</a>
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-: <a class="el" href="namespacesignal.html#a9fc88234ff148a7c67bdd1d9fb9be520">signal</a>
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-: <a class="el" href="namespacesignal.html#ade7bed9871394e4ee815fb072eb01d53">signal</a>
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-: <a class="el" href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">signal</a>
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-: <a class="el" href="namespacesignal.html#a134a194f6b48255f8a6b4673ef374c47">signal</a>
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-: <a class="el" href="namespacesignal.html#ad5d55541768dea04da2727deee1c7c10">signal</a>
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-: <a class="el" href="namespacesignal.html#ae40bcae556e7b36ae9159493e0a3370d">signal</a>
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-: <a class="el" href="namespacemetrics.html#a009ce6df440a6b21f70d8e4ca083c08e">metrics</a>
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-: <a class="el" href="namespacemetrics.html#abcfd135af33298ae1b7dc87e11b774f0">metrics</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#af60e3498e613809ab7d64be615a5199f">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a69a130f600c36b578283d554470281b0">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a0c3721fec40f9d978411edbf72e625fb">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a810b66fe20ac19ecb60ad5cb69fffc55">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a61990d564e45776343ea6b18264c57bd">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#add37d98c9fd09ce4af1982d72171bb49">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#adeae9a542ea1c402b75ab25df9bffecd">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a335496b154f599f24d175df560ca2427">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a349b2b95e02c0666aae873e0fe6a1d31">blocktridiagonalsolver</a>
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-: <a class="el" href="namespacev3fit__input.html#afcd1be81ddae51729f5642e4fd2f0fa5">v3fit_input</a>
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-: <a class="el" href="namespacev3fit__input.html#a865f82a521a5c0de1a798076bf9b5e12">v3fit_input</a>
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-: <a class="el" href="namespacev3fit__input.html#a2899fb18ce5ae15243a0b67f9adbef94">v3fit_input</a>
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-: <a class="el" href="namespacevmec__input.html#af54313c2db00a871ff7430922618954e">vmec_input</a>
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-: <a class="el" href="namespacemetrics.html#a1a3b03bb06a00367ee9f657845ac1ff9">metrics</a>
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-: <a class="el" href="namespaceblocktridiagonalsolver.html#a0fad57160a71362d4e17a392b3e14fad">blocktridiagonalsolver</a>
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-: <a class="el" href="namespaceshared__data.html#a0961e17161781c386896ceb97b614fca">shared_data</a>
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-: <a class="el" href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">v3fit_input</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a8af62332b962aff18cec1998bf9ad477">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a96b1398020ce783b2e0b9851f4a8d69c">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a7fa92007d385a9156455550ccc906802">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#ad45ccc6137e6ab41eb9d99dbbd3b3bcf">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a4a90f6e19171fca674df6d5069002f6d">surface_commandline_parser</a>
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-: <a class="el" href="namespacesurface__commandline__parser.html#a312a118e86c345c4ec08108dc2c91cfe">surface_commandline_parser</a>
-</li>
-<li>surface_commandline_parser_get_string()
-: <a class="el" href="namespacesurface__commandline__parser.html#a0cb64c12a1f73243c9c03df1ecb7d279">surface_commandline_parser</a>
-</li>
-<li>surface_commandline_parser_is_flag_set()
-: <a class="el" href="namespacesurface__commandline__parser.html#a4f73459e1dc91ea0dff4b8832dc9aa69">surface_commandline_parser</a>
-</li>
-<li>surface_commandline_parser_no_error
-: <a class="el" href="namespacesurface__commandline__parser.html#a18ba83fe2fcbf9aaa6c8ae44eb0bea90">surface_commandline_parser</a>
-</li>
-<li>surface_commandline_parser_print_help()
-: <a class="el" href="namespacesurface__commandline__parser.html#af7916005e2330405b3395eeca4bcd405">surface_commandline_parser</a>
-</li>
-<li>surface_context_construct()
-: <a class="el" href="namespacesurface__context.html#a69e617187f07b0acfd25327aed343587">surface_context</a>
-</li>
-<li>surface_context_destruct()
-: <a class="el" href="namespacesurface__context.html#abd945f01c2af536ec0778af571c5682c">surface_context</a>
-</li>
-<li>surface_context_set_vector_potential()
-: <a class="el" href="namespacesurface__context.html#a3c4eac39b1bf2f652e0af1b996ade606">surface_context</a>
-</li>
-<li>surfavg()
-: <a class="el" href="namespacemetrics.html#ac8cac1820c5ff7ecff72e9527f577e9e">metrics</a>
-</li>
-<li>swap()
-: <a class="el" href="namespacef1dim__mod.html#a64bd9aedca0738ede1633383485f4d01">f1dim_mod</a>
-</li>
-<li>sxrch_dot_filename
-: <a class="el" href="namespacev3fit__input.html#a72d9b20480f9377f4ebc813caa9c4fda">v3fit_input</a>
-</li>
-<li>sxrch_dot_parse_chord()
-: <a class="el" href="namespacesxrch__dot.html#a71b4b250f369c685b3d3aaf2bd5c5ba6">sxrch_dot</a>
-</li>
-<li>sxrch_dot_read()
-: <a class="el" href="namespacesxrch__dot.html#a1d1c61c5ce3570230efbc3dade765cba">sxrch_dot</a>
-</li>
-<li>sxrem_destruct()
-: <a class="el" href="namespacesxrem.html#a7951a757a028449cccdc36353c29715b">sxrem</a>
-</li>
-<li>sxrem_emiss_construct()
-: <a class="el" href="namespacesxrem.html#a83c285e77bb9794da47b0a4bace0501a">sxrem</a>
-</li>
-<li>sxrem_emiss_destruct()
-: <a class="el" href="namespacesxrem.html#a3504d2727f12e9edcc8589f775e81aac">sxrem</a>
-</li>
-<li>sxrem_emiss_get_gp_i()
-: <a class="el" href="namespacesxrem.html#a975b531b2db7f039c05543d060157668">sxrem</a>
-</li>
-<li>sxrem_emiss_get_gp_s()
-: <a class="el" href="namespacesxrem.html#aa598fc2540cf0db5055533dacff48fb9">sxrem</a>
-</li>
-<li>sxrem_emiss_get_gp_x()
-: <a class="el" href="namespacesxrem.html#a2afcf039fae9ddf05156f09a39a34d2d">sxrem</a>
-</li>
-<li>sxrem_emiss_get_modeled_signal()
-: <a class="el" href="namespacesxrem.html#a2be6f71767386367f40d12673d18a0b3">sxrem</a>
-</li>
-<li>sxrem_emiss_get_type()
-: <a class="el" href="namespacesxrem.html#aba6707e07b7c065e4efc90e3f25cbfd0">sxrem</a>
-</li>
-<li>sxrem_min
-: <a class="el" href="namespacev3fit__input.html#ac0fb1e3a467bb70bfcb7098781678eba">v3fit_input</a>
-</li>
-<li>sxrem_ratio_a
-: <a class="el" href="namespacev3fit__input.html#a1aea7c110a801736a6c3125a5aac348d">v3fit_input</a>
-</li>
-<li>sxrem_ratio_construct()
-: <a class="el" href="namespacesxrem__ratio.html#a6a7803b872fb585e2d54e6308e481938">sxrem_ratio</a>
-</li>
-<li>sxrem_ratio_destruct()
-: <a class="el" href="namespacesxrem__ratio.html#ade9268caf165fd7b6d80bdc3c1862277">sxrem_ratio</a>
-</li>
-<li>sxrem_ratio_dot_filename
-: <a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">v3fit_input</a>
-</li>
-<li>sxrem_ratio_dot_parse_chord()
-: <a class="el" href="namespacesxrem__ratio__dot.html#af8bab8b0e2f8f538b13b74531db89560">sxrem_ratio_dot</a>
-</li>
-<li>sxrem_ratio_dot_read()
-: <a class="el" href="namespacesxrem__ratio__dot.html#ad759c01e4c13062892dd26b649ce2b64">sxrem_ratio_dot</a>
-</li>
-<li>sxrem_ratio_get_modeled_signal()
-: <a class="el" href="namespacesxrem__ratio.html#abdecaf456c565af7a11370e466dc90ae">sxrem_ratio</a>
-</li>
-<li>sxrem_ratio_get_observed_signal()
-: <a class="el" href="namespacesxrem__ratio.html#a8bd12c0a8d0c7f290f978e4059f7dd28">sxrem_ratio</a>
-</li>
-<li>sxrem_ratio_get_type()
-: <a class="el" href="namespacesxrem__ratio.html#a3334120e426e0f3524887db26808b269">sxrem_ratio</a>
-</li>
-<li>sxrem_ratio_write_auxiliary()
-: <a class="el" href="namespacesxrem__ratio.html#ac58b81566f9518d74dea9bedf069cacf">sxrem_ratio</a>
-</li>
-<li>sxrem_te_a
-: <a class="el" href="namespacev3fit__input.html#ae012a2d7050755e3fa8f0b4075fa722f">v3fit_input</a>
-</li>
-<li>sxrem_ti_construct()
-: <a class="el" href="namespacesxrem.html#a0f725023edd776ab35b1d69a75f77d88">sxrem</a>
-</li>
-<li>sxrem_ti_get_gp_i()
-: <a class="el" href="namespacesxrem.html#a98b972d24c615950906e2069b9c4f8ae">sxrem</a>
-</li>
-<li>sxrem_ti_get_gp_s()
-: <a class="el" href="namespacesxrem.html#a2d6df79edd9ff1537a1e94f4e4b0d442">sxrem</a>
-</li>
-<li>sxrem_ti_get_gp_x()
-: <a class="el" href="namespacesxrem.html#a011d9eb650506dd013a3d3bc1bca96e5">sxrem</a>
-</li>
-<li>sxrem_ti_get_modeled_signal()
-: <a class="el" href="namespacesxrem.html#a06ff81f3a17713d6e579a7ab928f40f4">sxrem</a>
-</li>
-<li>sxrem_ti_get_type()
-: <a class="el" href="namespacesxrem.html#a29a6589470914b44ff66f7131aa75e21">sxrem</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
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diff --git a/html/namespacemembers_t.html b/html/namespacemembers_t.html
deleted file mode 100644
index 00a0b75..0000000
--- a/html/namespacemembers_t.html
+++ /dev/null
@@ -1,216 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Namespace Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
-<link href="doxygen.css" rel="stylesheet" type="text/css" />
-</head>
-<body>
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
- </tr>
- </tbody>
-</table>
-</div>
-<!-- end header part -->
-<!-- Generated by Doxygen 1.9.1 -->
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-$(function() {
-  initMenu('',true,false,'search.php','Search');
-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */</script>
-<div id="main-nav"></div>
-</div><!-- top -->
-<!-- window showing the filter options -->
-<div id="MSearchSelectWindow"
-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
-
-<!-- iframe showing the search results (closed by default) -->
-<div id="MSearchResultsWindow">
-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
-</iframe>
-</div>
-
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespace members with links to the namespaces they belong to:</div>
-
-<h3><a id="index_t"></a>- t -</h3><ul>
-<li>tcon0
-: <a class="el" href="namespacevmec__input.html#a4708b300fea260a159648ca47c59ffdc">vmec_input</a>
-</li>
-<li>te_min
-: <a class="el" href="namespacev3fit__input.html#a084d31503aaa6c68d046a1d41a9eaf63">v3fit_input</a>
-</li>
-<li>test_div()
-: <a class="el" href="namespaceutilities.html#a3595a7fa86d5b7714483cc9cb05ff00f">utilities</a>
-</li>
-<li>test_fourier()
-: <a class="el" href="namespacefourier.html#a4331822c74c9060f004e2cc2186a058f">fourier</a>
-</li>
-<li>test_search_function()
-: <a class="el" href="namespaceintegration__path.html#abdecb3a86227ac22524b234161ee4d86">integration_path</a>
-</li>
-<li>test_utilities()
-: <a class="el" href="namespaceutilities.html#a365a15cb83921febb9278a6a9b158079">utilities</a>
-</li>
-<li>thomson_destruct()
-: <a class="el" href="namespacethomson.html#ad46f3991fb572fc3bf469c7b65ab2513">thomson</a>
-</li>
-<li>thomson_get_gp_s()
-: <a class="el" href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860">thomson</a>
-</li>
-<li>thomson_get_type()
-: <a class="el" href="namespacethomson.html#a1c69b8158aa88dbf4bb5227044c9c4dd">thomson</a>
-</li>
-<li>thomson_ne_construct()
-: <a class="el" href="namespacethomson.html#a8c8b7ae3490784655862d004c75dfcfc">thomson</a>
-</li>
-<li>thomson_ne_get_gp_i()
-: <a class="el" href="namespacethomson.html#ad9f23e91103f97fa00d8beff5e4b5ce5">thomson</a>
-</li>
-<li>thomson_ne_get_gp_x()
-: <a class="el" href="namespacethomson.html#ac75d9e1d51a15dcc51646e98b3268ca8">thomson</a>
-</li>
-<li>thomson_ne_get_modeled_signal()
-: <a class="el" href="namespacethomson.html#a2f5aea84ecb67cb6f085177a914ab711">thomson</a>
-</li>
-<li>thomson_p_construct()
-: <a class="el" href="namespacethomson.html#a6c080c16c881b53d106ce8cecd386b37">thomson</a>
-</li>
-<li>thomson_p_error
-: <a class="el" href="namespacethomson.html#acfc8ae82895e70907a183578f4cc576e">thomson</a>
-</li>
-<li>thomson_p_get_modeled_signal()
-: <a class="el" href="namespacethomson.html#a0beaae26008bb46c750e4b73cc39005c">thomson</a>
-</li>
-<li>thomson_te_construct()
-: <a class="el" href="namespacethomson.html#a1cc5dc0ccb2d5b512af08205eca1e16b">thomson</a>
-</li>
-<li>thomson_te_get_gp_i()
-: <a class="el" href="namespacethomson.html#aa100d27e0798f8cafd946b05a0fe25a6">thomson</a>
-</li>
-<li>thomson_te_get_gp_x()
-: <a class="el" href="namespacethomson.html#ad857caf892011a452b4550c96744c7e2">thomson</a>
-</li>
-<li>thomson_te_get_modeled_signal()
-: <a class="el" href="namespacethomson.html#a3d42a4d600168c3c53fb28a3db35a858">thomson</a>
-</li>
-<li>thscte_dot_filename
-: <a class="el" href="namespacev3fit__input.html#a44c3bf45a946bb5583996a47eab2e1c7">v3fit_input</a>
-</li>
-<li>thscte_dot_parse_chord()
-: <a class="el" href="namespacethscte__dot.html#ab7e0fba6bc6e693eea2930045b92124a">thscte_dot</a>
-</li>
-<li>thscte_dot_read()
-: <a class="el" href="namespacethscte__dot.html#a7c177423fb3b2ea5d7a06293177280de">thscte_dot</a>
-</li>
-<li>ti_min
-: <a class="el" href="namespacev3fit__input.html#a0367dfcbb23024e3e527e86df2ca6b68">v3fit_input</a>
-</li>
-<li>time_slice
-: <a class="el" href="namespacevmec__input.html#a6aaf949325c7cad6ef734c73897b1eb5">vmec_input</a>
-</li>
-<li>timecountinit()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#af61a70927de3a83b37424b8e60a795cd">blocktridiagonalsolver</a>
-</li>
-<li>timecountprint()
-: <a class="el" href="namespaceblocktridiagonalsolver.html#af5dc3933d8ff5ace49198e76c11b87cc">blocktridiagonalsolver</a>
-</li>
-<li>timerfreq
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a8c1adc3f48b4fadf933a0a97da461f42">blocktridiagonalsolver</a>
-</li>
-<li>to_full_mesh2()
-: <a class="el" href="namespaceutilities.html#a001873e5aa19fce5d04482dde1e081bd">utilities</a>
-</li>
-<li>to_full_mesh3()
-: <a class="el" href="namespaceutilities.html#aa39bbeefd09bd82b946d1ac38e7856ae">utilities</a>
-</li>
-<li>to_half_mesh()
-: <a class="el" href="namespaceutilities.html#aa56fb8ab863c6128f936e34a3028c8f0">utilities</a>
-</li>
-<li>to_half_mesh_p()
-: <a class="el" href="namespaceutilities.html#a396f6885db6a18350a572b6df1b58195">utilities</a>
-</li>
-<li>tolowerf()
-: <a class="el" href="namespacemetrics.html#aae1d342cb9184d1da26e344cc8bb6f7c">metrics</a>
-</li>
-<li>tolowerh()
-: <a class="el" href="namespacemetrics.html#ae8d8f13e11222d0222a71095303dd03f">metrics</a>
-</li>
-<li>totcommcount
-: <a class="el" href="namespaceblocktridiagonalsolver.html#aaf061cfc5aee8605dbcdaf05f88aa730">blocktridiagonalsolver</a>
-</li>
-<li>totcommtime
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a488e4edc560bbe9cda0467bd4792f2ca">blocktridiagonalsolver</a>
-</li>
-<li>totcount
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a0ec32a2d1b308a498dd0546db0c46024">blocktridiagonalsolver</a>
-</li>
-<li>totinvcount
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a0903dc3f4cccd84c7fe25eb16f82192b">blocktridiagonalsolver</a>
-</li>
-<li>totinvtime
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a028e26c2e0f7b39d05ab2bdf2d94f83f">blocktridiagonalsolver</a>
-</li>
-<li>totmatmulcount
-: <a class="el" href="namespaceblocktridiagonalsolver.html#af69d722883be63eb2374609a649b8d58">blocktridiagonalsolver</a>
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-<li>totmatmultime
-: <a class="el" href="namespaceblocktridiagonalsolver.html#ad5c242bf9744409d116e44ee8d3bcaf7">blocktridiagonalsolver</a>
-</li>
-<li>totmatsolcount
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a61d16ca0577d7f95474373ab36093a5a">blocktridiagonalsolver</a>
-</li>
-<li>totmatsoltime
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a8581b868ea2c30c634040d674812b9fe">blocktridiagonalsolver</a>
-</li>
-<li>tottime
-: <a class="el" href="namespaceblocktridiagonalsolver.html#a9b59087555957c0d0cfcf56c6aa62a43">blocktridiagonalsolver</a>
-</li>
-<li>toupper()
-: <a class="el" href="namespacemetrics.html#a7c83407019da929ce145af9ee88caa98">metrics</a>
-</li>
-<li>two_power()
-: <a class="el" href="namespacefunctions.html#ac12f372c3f87a33cef53253787547dfa">functions</a>
-</li>
-<li>two_power_gs()
-: <a class="el" href="namespacefunctions.html#a55f92753ee82d0cb0e6622462022debf">functions</a>
-</li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/namespacemembers_u.html b/html/namespacemembers_u.html
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index 184afce..0000000
--- a/html/namespacemembers_u.html
+++ /dev/null
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<meta http-equiv="X-UA-Compatible" content="IE=9"/>
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-<meta name="viewport" content="width=device-width, initial-scale=1"/>
-<title>Stellarator-Tools: Namespace Members</title>
-<link href="tabs.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="jquery.js"></script>
-<script type="text/javascript" src="dynsections.js"></script>
-<link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
-<script type="text/javascript" src="search/search.js"></script>
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-<div id="titlearea">
-<table cellspacing="0" cellpadding="0">
- <tbody>
- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
-   </div>
-  </td>
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-</table>
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-<!-- end header part -->
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-: <a class="el" href="namespacevmec__context.html#af56356294cab64c01888b7ebdcd707a4">vmec_context</a>
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-<li>vmec_context_destruct()
-: <a class="el" href="namespacevmec__context.html#afb80bc5e740637348f0725f5edc5fc6d">vmec_context</a>
-</li>
-<li>vmec_context_get_context()
-: <a class="el" href="namespacevmec__context.html#a7592273358ba06806ff2db973b9df011">vmec_context</a>
-</li>
-<li>vmec_context_set_context()
-: <a class="el" href="namespacevmec__context.html#a16ee3ba2338ee91a8d0d4490531dfe59">vmec_context</a>
-</li>
-<li>vmec_context_sync_child()
-: <a class="el" href="namespacevmec__context.html#a3de32c83f127d5f20bf437a4d1268f7f">vmec_context</a>
-</li>
-<li>vmec_context_sync_state()
-: <a class="el" href="namespacevmec__context.html#acb9e1bb9ca425109347a6067fc2023d8">vmec_context</a>
-</li>
-<li>vmec_converge()
-: <a class="el" href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">vmec_equilibrium</a>
-</li>
-<li>vmec_curtor_id
-: <a class="el" href="namespacevmec__equilibrium.html#adebd6316a6f0ce6fc3d816e9fc4d543c">vmec_equilibrium</a>
-</li>
-<li>vmec_def_result()
-: <a class="el" href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37">vmec_equilibrium</a>
-</li>
-<li>vmec_destruct()
-: <a class="el" href="namespacevmec__equilibrium.html#aac74c89608f1ab1ba7efa6a6a80bd9d5">vmec_equilibrium</a>
-</li>
-<li>vmec_extcur_id
-: <a class="el" href="namespacevmec__equilibrium.html#ad461a717dd2c684868750403c2b36c1c">vmec_equilibrium</a>
-</li>
-<li>vmec_file_construct()
-: <a class="el" href="namespacevmec__file.html#a2a134b867ea82ff10671fb3d656966f8">vmec_file</a>
-</li>
-<li>vmec_file_destruct()
-: <a class="el" href="namespacevmec__file.html#a80c64481e8fa94dbe54b34b7315f11bc">vmec_file</a>
-</li>
-<li>vmec_get_area_int_element()
-: <a class="el" href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f">vmec_equilibrium</a>
-</li>
-<li>vmec_get_b_vac()
-: <a class="el" href="namespacevmec__equilibrium.html#a96e24113a75f37fbf54fd62109a9d18f">vmec_equilibrium</a>
-</li>
-<li>vmec_get_b_vec()
-: <a class="el" href="namespacevmec__equilibrium.html#a77d739f769354141eecec5844b37263a">vmec_equilibrium</a>
-</li>
-<li>vmec_get_con_surface_kphigrid()
-: <a class="el" href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82">vmec_equilibrium</a>
-</li>
-<li>vmec_get_con_surface_krgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a">vmec_equilibrium</a>
-</li>
-<li>vmec_get_con_surface_kzgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ext_b_plasma()
-: <a class="el" href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ext_currents()
-: <a class="el" href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e">vmec_equilibrium</a>
-</li>
-<li>vmec_get_flux()
-: <a class="el" href="namespacevmec__equilibrium.html#a85a45be457fd2cd01d9161590731dcc1">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ne_ij()
-: <a class="el" href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ne_num_hyper_param()
-: <a class="el" href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ne_pi()
-: <a class="el" href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ne_pp()
-: <a class="el" href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_sxrem_ij()
-: <a class="el" href="namespacevmec__equilibrium.html#ac2cc60f25eaca40b76f82f4208b1809e">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_sxrem_num_hyper_param()
-: <a class="el" href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_sxrem_pi()
-: <a class="el" href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_sxrem_pp()
-: <a class="el" href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_te_ij()
-: <a class="el" href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_te_num_hyper_param()
-: <a class="el" href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_te_pi()
-: <a class="el" href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_te_pp()
-: <a class="el" href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ti_ij()
-: <a class="el" href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ti_num_hyper_param()
-: <a class="el" href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ti_pi()
-: <a class="el" href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb">vmec_equilibrium</a>
-</li>
-<li>vmec_get_gp_ti_pp()
-: <a class="el" href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2">vmec_equilibrium</a>
-</li>
-<li>vmec_get_grid_size()
-: <a class="el" href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1">vmec_equilibrium</a>
-</li>
-<li>vmec_get_grid_start()
-: <a class="el" href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff">vmec_equilibrium</a>
-</li>
-<li>vmec_get_grid_stop()
-: <a class="el" href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4">vmec_equilibrium</a>
-</li>
-<li>vmec_get_int_b_dphi()
-: <a class="el" href="namespacevmec__equilibrium.html#aa571272262c2461ad439aacedb13b505">vmec_equilibrium</a>
-</li>
-<li>vmec_get_magnetic_volume_jphigrid()
-: <a class="el" href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37">vmec_equilibrium</a>
-</li>
-<li>vmec_get_magnetic_volume_jrgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a">vmec_equilibrium</a>
-</li>
-<li>vmec_get_magnetic_volume_jzgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16">vmec_equilibrium</a>
-</li>
-<li>vmec_get_magnetic_volume_rgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02">vmec_equilibrium</a>
-</li>
-<li>vmec_get_magnetic_volume_zgrid()
-: <a class="el" href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ne_af()
-: <a class="el" href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ne_cart()
-: <a class="el" href="namespacevmec__equilibrium.html#a5162748610407fdba4edfeede1c56400">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ne_radial()
-: <a class="el" href="namespacevmec__equilibrium.html#a38dff7757255c7f94de65a1b177b7111">vmec_equilibrium</a>
-</li>
-<li>vmec_get_p_cart()
-: <a class="el" href="namespacevmec__equilibrium.html#a28da0b909345dd8940e046c432624f54">vmec_equilibrium</a>
-</li>
-<li>vmec_get_p_radial()
-: <a class="el" href="namespacevmec__equilibrium.html#a7d6de6e41f3b42cbe5f9c720e9412abe">vmec_equilibrium</a>
-</li>
-<li>vmec_get_param_id()
-: <a class="el" href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24">vmec_equilibrium</a>
-</li>
-<li>vmec_get_param_name()
-: <a class="el" href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332">vmec_equilibrium</a>
-</li>
-<li>vmec_get_param_value()
-: <a class="el" href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73">vmec_equilibrium</a>
-</li>
-<li>vmec_get_plasma_edge()
-: <a class="el" href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79">vmec_equilibrium</a>
-</li>
-<li>vmec_get_s()
-: <a class="el" href="namespacevmec__equilibrium.html#ab972cec76da4119a8904190c6ef1c625">vmec_equilibrium</a>
-</li>
-<li>vmec_get_suv()
-: <a class="el" href="namespacevmec__equilibrium.html#ab7b4ef3ae9bb37c5dbdac077d64a7f36">vmec_equilibrium</a>
-</li>
-<li>vmec_get_sxrem_af()
-: <a class="el" href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265">vmec_equilibrium</a>
-</li>
-<li>vmec_get_sxrem_cart()
-: <a class="el" href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">vmec_equilibrium</a>
-</li>
-<li>vmec_get_sxrem_radial()
-: <a class="el" href="namespacevmec__equilibrium.html#aad5f316f17dd9811f1aa5a9ee49b3e8a">vmec_equilibrium</a>
-</li>
-<li>vmec_get_te_af()
-: <a class="el" href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">vmec_equilibrium</a>
-</li>
-<li>vmec_get_te_cart()
-: <a class="el" href="namespacevmec__equilibrium.html#a380b877fbbdf96daa86ae594a58aa57b">vmec_equilibrium</a>
-</li>
-<li>vmec_get_te_radial()
-: <a class="el" href="namespacevmec__equilibrium.html#ab4edfad818935e2d96e6a744df849a4b">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ti_af()
-: <a class="el" href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ti_cart()
-: <a class="el" href="namespacevmec__equilibrium.html#aefb1dc6ad97f59a8d75d60f2737f688c">vmec_equilibrium</a>
-</li>
-<li>vmec_get_ti_radial()
-: <a class="el" href="namespacevmec__equilibrium.html#a7e33bef6e48cc1fd769a35b2b4a27699">vmec_equilibrium</a>
-</li>
-<li>vmec_get_type()
-: <a class="el" href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde">vmec_equilibrium</a>
-</li>
-<li>vmec_get_volume_int_element()
-: <a class="el" href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27">vmec_equilibrium</a>
-</li>
-<li>vmec_gmnc_id
-: <a class="el" href="namespacevmec__equilibrium.html#a07373f3ebb67b7811df5e9e67f03c078">vmec_equilibrium</a>
-</li>
-<li>vmec_gmns_id
-: <a class="el" href="namespacevmec__equilibrium.html#a794d9382c295bf39fa34873594fe07bd">vmec_equilibrium</a>
-</li>
-<li>vmec_iotaf_id
-: <a class="el" href="namespacevmec__equilibrium.html#a5d9bb3b9d252e12453bd5a703783b81d">vmec_equilibrium</a>
-</li>
-<li>vmec_iotas_id
-: <a class="el" href="namespacevmec__equilibrium.html#aaad2b455e2fcf2ff14d6da58f4d7ad41">vmec_equilibrium</a>
-</li>
-<li>vmec_is_1d_array()
-: <a class="el" href="namespacevmec__equilibrium.html#afd8255c2b4d1657391a66f44f3b3245b">vmec_equilibrium</a>
-</li>
-<li>vmec_is_2d_array()
-: <a class="el" href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406">vmec_equilibrium</a>
-</li>
-<li>vmec_is_recon_param()
-: <a class="el" href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75">vmec_equilibrium</a>
-</li>
-<li>vmec_is_scaler_value()
-: <a class="el" href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd">vmec_equilibrium</a>
-</li>
-<li>vmec_is_using_point()
-: <a class="el" href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2">vmec_equilibrium</a>
-</li>
-<li>vmec_jcuru_id
-: <a class="el" href="namespacevmec__equilibrium.html#a2e08d8477dd4016a1f954ed25d8a3a0e">vmec_equilibrium</a>
-</li>
-<li>vmec_jcurv_id
-: <a class="el" href="namespacevmec__equilibrium.html#a378bedd0a2c9bec3416e31f8388450b8">vmec_equilibrium</a>
-</li>
-<li>vmec_jdotb_id
-: <a class="el" href="namespacevmec__equilibrium.html#abe673b609b43980702991847b92a8a2d">vmec_equilibrium</a>
-</li>
-<li>vmec_lmnc_id
-: <a class="el" href="namespacevmec__equilibrium.html#a03616dbe064dc25fc0b9564a0a7ffe62">vmec_equilibrium</a>
-</li>
-<li>vmec_lmns_id
-: <a class="el" href="namespacevmec__equilibrium.html#a54fa67fbdd566b876fd47360aae62270">vmec_equilibrium</a>
-</li>
-<li>vmec_nli_filename
-: <a class="el" href="namespacev3fit__input.html#aaeec2a0fe790641ebac2a03c7abd7a4c">v3fit_input</a>
-</li>
-<li>vmec_phi_id
-: <a class="el" href="namespacevmec__equilibrium.html#aa5956a2ec62a6d82592d034ed46f4a26">vmec_equilibrium</a>
-</li>
-<li>vmec_phi_offset_id
-: <a class="el" href="namespacevmec__equilibrium.html#a58c5b0f5f2d05165a7ca39de57dfba65">vmec_equilibrium</a>
-</li>
-<li>vmec_phiedge_id
-: <a class="el" href="namespacevmec__equilibrium.html#a489b23e08c98da132bde52d15c30c6c4">vmec_equilibrium</a>
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-<li>vmec_pp_ne_af_id
-: <a class="el" href="namespacevmec__equilibrium.html#a019e1580d2b7dbe7a37758598bccd04c">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_ne_as_id
-: <a class="el" href="namespacevmec__equilibrium.html#a3faf8579d3a52bad762981fca8e2d93c">vmec_equilibrium</a>
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-<li>vmec_pp_ne_b_id
-: <a class="el" href="namespacevmec__equilibrium.html#ae7f7ea0d96eed5652d3129cdbda49983">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_sxrem_af_id
-: <a class="el" href="namespacevmec__equilibrium.html#af4f2edd1d01924f02f6f034c98ccacfb">vmec_equilibrium</a>
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-<li>vmec_pp_sxrem_as_id
-: <a class="el" href="namespacevmec__equilibrium.html#a871f244a3ae6e536ccb86941539ca75b">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_sxrem_b_id
-: <a class="el" href="namespacevmec__equilibrium.html#a077645c1708d8e0ddb8df55abd4c9803">vmec_equilibrium</a>
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-<li>vmec_pp_te_af_id
-: <a class="el" href="namespacevmec__equilibrium.html#ad62180f4da1c95c3f71f0fd648828b76">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_te_as_id
-: <a class="el" href="namespacevmec__equilibrium.html#a08b56327e084607b422da74e52f3dd05">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_te_b_id
-: <a class="el" href="namespacevmec__equilibrium.html#ae6576499bb805e1a2f82cbe9b1cf2758">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_ti_af_id
-: <a class="el" href="namespacevmec__equilibrium.html#a639e38b37362b53fba6983ace6855c03">vmec_equilibrium</a>
-</li>
-<li>vmec_pp_ti_as_id
-: <a class="el" href="namespacevmec__equilibrium.html#add270ee990889e4bde13bea4cead07bd">vmec_equilibrium</a>
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-<li>vmec_pp_ti_b_id
-: <a class="el" href="namespacevmec__equilibrium.html#aa3384d00d86f074fa5d6b278fa405d3c">vmec_equilibrium</a>
-</li>
-<li>vmec_pres_id
-: <a class="el" href="namespacevmec__equilibrium.html#ac69614cd96281639c1f33f68f7ac930a">vmec_equilibrium</a>
-</li>
-<li>vmec_pres_scale_id
-: <a class="el" href="namespacevmec__equilibrium.html#a842bf02fcc90038571786b127d36f9fb">vmec_equilibrium</a>
-</li>
-<li>vmec_presf_id
-: <a class="el" href="namespacevmec__equilibrium.html#a5b486a592ab38e2534825cf08499281a">vmec_equilibrium</a>
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-<li>vmec_qfact_id
-: <a class="el" href="namespacevmec__equilibrium.html#a81bbaad32c40492fc95cc7e2b4d827b8">vmec_equilibrium</a>
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-<li>vmec_raxis_cc_id
-: <a class="el" href="namespacevmec__equilibrium.html#a6bd2aacb0a99b2c5629d7b2906905b80">vmec_equilibrium</a>
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-<li>vmec_raxis_cs_id
-: <a class="el" href="namespacevmec__equilibrium.html#ac7e6537bc8d3bd12a8ccc32e2a7c1c66">vmec_equilibrium</a>
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-<li>vmec_rbc_id
-: <a class="el" href="namespacevmec__equilibrium.html#ab7611b5edf6b8a9f4395159551985799">vmec_equilibrium</a>
-</li>
-<li>vmec_rbs_id
-: <a class="el" href="namespacevmec__equilibrium.html#a6d3f41e4712891dac41771468dd70501">vmec_equilibrium</a>
-</li>
-<li>vmec_read_vac_file()
-: <a class="el" href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627">vmec_equilibrium</a>
-</li>
-<li>vmec_reset_boundary()
-: <a class="el" href="namespacevmec__equilibrium.html#a061ad2b9b7b412d4b7277cfabe513b64">vmec_equilibrium</a>
-</li>
-<li>vmec_reset_state()
-: <a class="el" href="namespacevmec__equilibrium.html#a57b943ab3a3657eb188595c753695219">vmec_equilibrium</a>
-</li>
-<li>vmec_restart()
-: <a class="el" href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd">vmec_equilibrium</a>
-</li>
-<li>vmec_rmnc_id
-: <a class="el" href="namespacevmec__equilibrium.html#a33baf45e2a0611d0b465fdbc5675fad5">vmec_equilibrium</a>
-</li>
-<li>vmec_rmns_id
-: <a class="el" href="namespacevmec__equilibrium.html#ada22928103003d9e4670cbf402825ee7">vmec_equilibrium</a>
-</li>
-<li>vmec_save_state()
-: <a class="el" href="namespacevmec__equilibrium.html#aeced22814edb5c90369367fe8ab1fcb0">vmec_equilibrium</a>
-</li>
-<li>vmec_set_magnetic_cache_calc()
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for reading in VMEC input and computing metric elements on the SIESTA (sqrt-flux) radial grid. Computes and stores the real-space metric elements, Jacobian based on square root of fluc splined vmec coordinate system. </p>
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-<p>@ brief Test to check that we computed the upper metric elements correctly. </p>
-<p>Check that the metric elements conform to the following relation to machine precission.</p>
-<p>hij*gjk = delta_ik (1)</p>
-<p>Note the repeated index implys a sum. </p>
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-<p>Deallocate memory containing metric elements on the half mesh. </p>
-<p>Also deallocates the grid variables.</p>
-<dl class="section note"><dt>Note</dt><dd>sqrtg is deallocated in init_bcovar and stored in jacob variable </dd></dl>
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-</div>
-<a id="a30aafecdce0930c6d5e0ac509e3dc247"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a30aafecdce0930c6d5e0ac509e3dc247">&#9670;&nbsp;</a></span>full_mesh_metrics()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::full_mesh_metrics</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the full grid metric elements. </p>
-<p>This subroutine gets the lower metric elements on the full mesh. Preserves positive definiteness of metric tensor. </p>
-
-</div>
-</div>
-<a id="ade655af91de9f50910e13eb3d8b4e6be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ade655af91de9f50910e13eb3d8b4e6be">&#9670;&nbsp;</a></span>half_mesh_metrics()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::half_mesh_metrics </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>r1_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>ru_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>rv_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>z1_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>zu_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns_i), intent(in)&#160;</td>
-          <td class="paramname"><em>zv_i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the metric elements on the half mesh. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">r1_i</td><td>R on the full mesh. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ru_i</td><td>dRdu on the full mesh. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rv_i</td><td>dRdv on the full mesh. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z1_i</td><td>Z on the full mesh. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zu_i</td><td>dZdu on the full mesh. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zv_i</td><td>dZdv on the full mesh. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a11fdc71eec6cbb8d4e2a6c371205368f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a11fdc71eec6cbb8d4e2a6c371205368f">&#9670;&nbsp;</a></span>init_metric_elements()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::init_metric_elements</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize the metric elements. </p>
-<p>Loads values on to the SIESTA meshes. This involves splining and interpolating the VMEC quantities from the VMEC radial grid to the SIESTA radial grid. </p>
-
-</div>
-</div>
-<a id="a84a2b82f878c4e2382d40aca99427022"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a84a2b82f878c4e2382d40aca99427022">&#9670;&nbsp;</a></span>loadgrid()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::loadgrid </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>istat</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Load the R, Z and lambda arrays from VMEC. </p>
-<p>R, Z and Lambda are recast onto the SIESTA grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[out]</td><td class="paramname">istat</td><td>Error status. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac555477718bc72564d6b45865235579b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac555477718bc72564d6b45865235579b">&#9670;&nbsp;</a></span>rz_to_ijsp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::rz_to_ijsp </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>zmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>lasym</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Transform from fourier R Z to real space qauntities. </p>
-<p>Computes R, Z, dr/du, dr/dv, dz/du and dz/dv from the fourier representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmn</td><td>Radial fourier amplitudes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmn</td><td>Vertical fourier amplitudes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lasym</td><td>A symmetric flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acc63bf315521c10905cbd3d7779c916e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acc63bf315521c10905cbd3d7779c916e">&#9670;&nbsp;</a></span>set_grid_sizes()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::set_grid_sizes </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mpol_in</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntor_in</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nfp_in</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(-ntor_in:ntor_in), intent(in)&#160;</td>
-          <td class="paramname"><em>tor_modes</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set grid sizes. </p>
-<p>The real space grid is determined from the number of toroidal and poloidal modes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol_in</td><td>Number of SIESTA poloidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntor_in</td><td>Number of SIESTA toroidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfp_in</td><td>Number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modes</td><td>Toroidal mode numbers. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac8cac1820c5ff7ecff72e9527f577e9e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac8cac1820c5ff7ecff72e9527f577e9e">&#9670;&nbsp;</a></span>surfavg()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::surfavg </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nsmin:nsmax), intent(out)&#160;</td>
-          <td class="paramname"><em>average</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nu_i,nv_i,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>q3d</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmax</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Surface average a quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[out]</td><td class="paramname">average</td><td>Surface average </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">q3d</td><td>3D quantity is real space. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aae1d342cb9184d1da26e344cc8bb6f7c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aae1d342cb9184d1da26e344cc8bb6f7c">&#9670;&nbsp;</a></span>tolowerf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::tolowerf </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nuv,ns), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupsij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupuij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,ns), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupvij</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Converts to covariant component full grid. </p>
-<p>Computes covariant (lower) from contravariant (upper) magnetic field components on the full mesh.</p>
-<p>xsubsij = gssf*xsupsij + gsuf*xsupuij + gsvf*xsupvij xsubuij = gsuf*xsupsij + guuf*xsupuij + guvf*xsupvij xsubvij = gsvf*xsupsij + guvf*xsupuij + gvvf*xsupvij</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupsij</td><td>Contravariant s component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupuij</td><td>Contravariant u component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupvij</td><td>Contravariant v component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubsij</td><td>Covariant s component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubuij</td><td>Covariant u component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubvij</td><td>Covariant v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Min radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Max radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae8d8f13e11222d0222a71095303dd03f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae8d8f13e11222d0222a71095303dd03f">&#9670;&nbsp;</a></span>tolowerh()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::tolowerh </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupsij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupuij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsupvij</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Converts to covariant component half grid. </p>
-<p>Computes covariant (lower) from contravariant (upper) magnetic field components on the half mesh.</p>
-<p>xsubsij = gss*xsupsij + gsu*xsupuij + gsv*xsupvij xsubuij = gsu*xsupsij + guu*xsupuij + guv*xsupvij xsubvij = gsv*xsupsij + guv*xsupuij + gvv*xsupvij</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupsij</td><td>Contravariant s component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupuij</td><td>Contravariant u component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsupvij</td><td>Contravariant v component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubsij</td><td>Covariant s component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubuij</td><td>Covariant u component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsubvij</td><td>Covariant v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Min radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Max radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7c83407019da929ce145af9ee88caa98"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7c83407019da929ce145af9ee88caa98">&#9670;&nbsp;</a></span>toupper()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine metrics::toupper </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsubsij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsubuij</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nuv,nsmin:nsmax), intent(in)&#160;</td>
-          <td class="paramname"><em>xsubvij</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Converts to contravariant component full grid. </p>
-<p>Computes contravariant (upper) from covariant (lower) components on the full mesh.</p>
-<p>xsupsij = hss*xsubsij + hsu*xsupuij + hsv*xsubvij xsupuij = hsu*xsubsij + huu*xsupuij + huv*xsubvij xsupvij = hsv*xsubsij + huv*xsupuij + hvv*xsubvij</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsubsij</td><td>Covariant s component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsubuij</td><td>Covariant u component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xsubvij</td><td>Covariant v component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsupsij</td><td>Contravariant s component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsupuij</td><td>Contravariant u component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xsupvij</td><td>Contravariant v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Min radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Max radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<div class="title">model Module Reference</div>  </div>
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-<p>Defines the base class of the type <a class="el" href="structmodel_1_1model__class.html">model_class</a>. The model contains information not specific to the equilibrium.  
-<a href="namespacemodel.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmodel_1_1model__class.html">model_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a model.  <a href="structmodel_1_1model__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:aba4858fbaa5f5546819d80132d41c204"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structmodel_1_1model__class.html">model_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aba4858fbaa5f5546819d80132d41c204">model_construct</a> (ne_type, sxrem_type, te_type, ti_type, ne_unit, ne_min, te_min, ti_min, sxrem_min, pressure_fraction, emission, equilibrium, sxrem_te, sxrem_ratio, resonace_range, coosig_wgts, state_flags, signal_factor, signal_offset, int_params)</td></tr>
-<tr class="memdesc:aba4858fbaa5f5546819d80132d41c204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> containing an <a class="el" href="namespaceequilibrium.html">equilibrium</a> object.  <a href="namespacemodel.html#aba4858fbaa5f5546819d80132d41c204">More...</a><br /></td></tr>
-<tr class="separator:aba4858fbaa5f5546819d80132d41c204"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2a265c388bc36a30cc61a1635f9353d6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a2a265c388bc36a30cc61a1635f9353d6">model_destruct</a> (this)</td></tr>
-<tr class="memdesc:a2a265c388bc36a30cc61a1635f9353d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> object.  <a href="namespacemodel.html#a2a265c388bc36a30cc61a1635f9353d6">More...</a><br /></td></tr>
-<tr class="separator:a2a265c388bc36a30cc61a1635f9353d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b5f5493e6eaa17053a53bdfb6efcfdb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a5b5f5493e6eaa17053a53bdfb6efcfdb">model_set_param</a> (this, id, i_index, j_index, value, eq_comm)</td></tr>
-<tr class="memdesc:a5b5f5493e6eaa17053a53bdfb6efcfdb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction model parameter.  <a href="namespacemodel.html#a5b5f5493e6eaa17053a53bdfb6efcfdb">More...</a><br /></td></tr>
-<tr class="separator:a5b5f5493e6eaa17053a53bdfb6efcfdb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8740a84b3eca0851c05d4727043bdd3d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a8740a84b3eca0851c05d4727043bdd3d">model_set_grid_params</a> (this, size)</td></tr>
-<tr class="memdesc:a8740a84b3eca0851c05d4727043bdd3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets grid parameters.  <a href="namespacemodel.html#a8740a84b3eca0851c05d4727043bdd3d">More...</a><br /></td></tr>
-<tr class="separator:a8740a84b3eca0851c05d4727043bdd3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae48bf1f364a222eee5f9636329693c9d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae48bf1f364a222eee5f9636329693c9d">model_set_grid_profiles</a> (this)</td></tr>
-<tr class="memdesc:ae48bf1f364a222eee5f9636329693c9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets grid profile values.  <a href="namespacemodel.html#ae48bf1f364a222eee5f9636329693c9d">More...</a><br /></td></tr>
-<tr class="separator:ae48bf1f364a222eee5f9636329693c9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0410fe025b7317ff0256580b6fdc8e4a"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0410fe025b7317ff0256580b6fdc8e4a">model_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:a0410fe025b7317ff0256580b6fdc8e4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a parameter.  <a href="namespacemodel.html#a0410fe025b7317ff0256580b6fdc8e4a">More...</a><br /></td></tr>
-<tr class="separator:a0410fe025b7317ff0256580b6fdc8e4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1505f0e988ed7337652bf62874052820"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a1505f0e988ed7337652bf62874052820">model_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a1505f0e988ed7337652bf62874052820"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the value of a model parameter.  <a href="namespacemodel.html#a1505f0e988ed7337652bf62874052820">More...</a><br /></td></tr>
-<tr class="separator:a1505f0e988ed7337652bf62874052820"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3ca24f831d2002ee26314de823344ef6"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a3ca24f831d2002ee26314de823344ef6">model_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:a3ca24f831d2002ee26314de823344ef6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the name of a model parameter.  <a href="namespacemodel.html#a3ca24f831d2002ee26314de823344ef6">More...</a><br /></td></tr>
-<tr class="separator:a3ca24f831d2002ee26314de823344ef6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd168d6dda98d564e8e7bf48f96ddd57"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#acd168d6dda98d564e8e7bf48f96ddd57">model_get_gp_ne_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:acd168d6dda98d564e8e7bf48f96ddd57"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespacemodel.html#acd168d6dda98d564e8e7bf48f96ddd57">More...</a><br /></td></tr>
-<tr class="separator:acd168d6dda98d564e8e7bf48f96ddd57"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a68ba795287919ecfea50079142f554aa"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a68ba795287919ecfea50079142f554aa">model_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:a68ba795287919ecfea50079142f554aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density profile af array.  <a href="namespacemodel.html#a68ba795287919ecfea50079142f554aa">More...</a><br /></td></tr>
-<tr class="separator:a68ba795287919ecfea50079142f554aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae9f5014e55090d54e89563d33a415813"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae9f5014e55090d54e89563d33a415813">model_get_gp_ne_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:ae9f5014e55090d54e89563d33a415813"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespacemodel.html#ae9f5014e55090d54e89563d33a415813">More...</a><br /></td></tr>
-<tr class="separator:ae9f5014e55090d54e89563d33a415813"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a322214757aa18279bce1c072d523b563"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a322214757aa18279bce1c072d523b563">model_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a322214757aa18279bce1c072d523b563"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacemodel.html#a322214757aa18279bce1c072d523b563">More...</a><br /></td></tr>
-<tr class="separator:a322214757aa18279bce1c072d523b563"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a83e3312f26b3c4370474d176aec26a24"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a83e3312f26b3c4370474d176aec26a24">model_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a83e3312f26b3c4370474d176aec26a24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacemodel.html#a83e3312f26b3c4370474d176aec26a24">More...</a><br /></td></tr>
-<tr class="separator:a83e3312f26b3c4370474d176aec26a24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1be0e1afe0b9d73209fccaced1cb0436"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a1be0e1afe0b9d73209fccaced1cb0436">model_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a1be0e1afe0b9d73209fccaced1cb0436"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacemodel.html#a1be0e1afe0b9d73209fccaced1cb0436">More...</a><br /></td></tr>
-<tr class="separator:a1be0e1afe0b9d73209fccaced1cb0436"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38b9f520587c2be4b1cef145bba73e63"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a38b9f520587c2be4b1cef145bba73e63">model_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a38b9f520587c2be4b1cef145bba73e63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a radial position.  <a href="namespacemodel.html#a38b9f520587c2be4b1cef145bba73e63">More...</a><br /></td></tr>
-<tr class="separator:a38b9f520587c2be4b1cef145bba73e63"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a62057acc8ea46a668223007226002f67"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a62057acc8ea46a668223007226002f67">model_get_gp_te_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a62057acc8ea46a668223007226002f67"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespacemodel.html#a62057acc8ea46a668223007226002f67">More...</a><br /></td></tr>
-<tr class="separator:a62057acc8ea46a668223007226002f67"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab42eb366f86f993be7af44899cd04ef9"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ab42eb366f86f993be7af44899cd04ef9">model_get_te_af</a> (this)</td></tr>
-<tr class="memdesc:ab42eb366f86f993be7af44899cd04ef9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature profile af array.  <a href="namespacemodel.html#ab42eb366f86f993be7af44899cd04ef9">More...</a><br /></td></tr>
-<tr class="separator:ab42eb366f86f993be7af44899cd04ef9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a1a925a4cac4f8ccf8fc3ce72184ea9a6">model_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespacemodel.html#a1a925a4cac4f8ccf8fc3ce72184ea9a6">More...</a><br /></td></tr>
-<tr class="separator:a1a925a4cac4f8ccf8fc3ce72184ea9a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aad7ae3b13fa5cab9ae3ca39c616ac247">model_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacemodel.html#aad7ae3b13fa5cab9ae3ca39c616ac247">More...</a><br /></td></tr>
-<tr class="separator:aad7ae3b13fa5cab9ae3ca39c616ac247"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ac5f8281c5691b8c6fb46d239f6e5add3">model_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacemodel.html#ac5f8281c5691b8c6fb46d239f6e5add3">More...</a><br /></td></tr>
-<tr class="separator:ac5f8281c5691b8c6fb46d239f6e5add3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#abea4081e3dbf6e1f04898bf6a3e03f25">model_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacemodel.html#abea4081e3dbf6e1f04898bf6a3e03f25">More...</a><br /></td></tr>
-<tr class="separator:abea4081e3dbf6e1f04898bf6a3e03f25"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a7a9bb4ec0f04d8323ba7cffd6905b4fe">model_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a radial position.  <a href="namespacemodel.html#a7a9bb4ec0f04d8323ba7cffd6905b4fe">More...</a><br /></td></tr>
-<tr class="separator:a7a9bb4ec0f04d8323ba7cffd6905b4fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aee6d3229029c80f76294f739644e94fe"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aee6d3229029c80f76294f739644e94fe">model_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:aee6d3229029c80f76294f739644e94fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespacemodel.html#aee6d3229029c80f76294f739644e94fe">More...</a><br /></td></tr>
-<tr class="separator:aee6d3229029c80f76294f739644e94fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0746473f984e45316fb160fd9053c457"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0746473f984e45316fb160fd9053c457">model_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:a0746473f984e45316fb160fd9053c457"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature profile af array.  <a href="namespacemodel.html#a0746473f984e45316fb160fd9053c457">More...</a><br /></td></tr>
-<tr class="separator:a0746473f984e45316fb160fd9053c457"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a44a83ac8ff0d2aa56bb6e0c09808ea60">model_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespacemodel.html#a44a83ac8ff0d2aa56bb6e0c09808ea60">More...</a><br /></td></tr>
-<tr class="separator:a44a83ac8ff0d2aa56bb6e0c09808ea60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af23470f0527e1e1ba842b4874b53665f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#af23470f0527e1e1ba842b4874b53665f">model_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:af23470f0527e1e1ba842b4874b53665f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespacemodel.html#af23470f0527e1e1ba842b4874b53665f">More...</a><br /></td></tr>
-<tr class="separator:af23470f0527e1e1ba842b4874b53665f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65bab13e633f9a0b434163439a3cbb2c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a65bab13e633f9a0b434163439a3cbb2c">model_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a65bab13e633f9a0b434163439a3cbb2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacemodel.html#a65bab13e633f9a0b434163439a3cbb2c">More...</a><br /></td></tr>
-<tr class="separator:a65bab13e633f9a0b434163439a3cbb2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a186a54343511101548c76a481a178354"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a186a54343511101548c76a481a178354">model_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a186a54343511101548c76a481a178354"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacemodel.html#a186a54343511101548c76a481a178354">More...</a><br /></td></tr>
-<tr class="separator:a186a54343511101548c76a481a178354"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a66850f85ec8926e37ed2d5919114dd03"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a66850f85ec8926e37ed2d5919114dd03">model_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a66850f85ec8926e37ed2d5919114dd03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a radial position.  <a href="namespacemodel.html#a66850f85ec8926e37ed2d5919114dd03">More...</a><br /></td></tr>
-<tr class="separator:a66850f85ec8926e37ed2d5919114dd03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad8cd43a44f04d67820bceeb1b6f774ed">model_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emission gp kernel hyper parameters.  <a href="namespacemodel.html#ad8cd43a44f04d67820bceeb1b6f774ed">More...</a><br /></td></tr>
-<tr class="separator:ad8cd43a44f04d67820bceeb1b6f774ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a84634e1e0804a4e8d6d2b9fb8e1ccc1f">model_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity profile af array.  <a href="namespacemodel.html#a84634e1e0804a4e8d6d2b9fb8e1ccc1f">More...</a><br /></td></tr>
-<tr class="separator:a84634e1e0804a4e8d6d2b9fb8e1ccc1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8b1a92b704161db3a03beeebaa6701eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a8b1a92b704161db3a03beeebaa6701eb">model_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:a8b1a92b704161db3a03beeebaa6701eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the two indicies.  <a href="namespacemodel.html#a8b1a92b704161db3a03beeebaa6701eb">More...</a><br /></td></tr>
-<tr class="separator:a8b1a92b704161db3a03beeebaa6701eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa19addbe2bed2a528c8b8bf222707e86"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aa19addbe2bed2a528c8b8bf222707e86">model_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:aa19addbe2bed2a528c8b8bf222707e86"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacemodel.html#aa19addbe2bed2a528c8b8bf222707e86">More...</a><br /></td></tr>
-<tr class="separator:aa19addbe2bed2a528c8b8bf222707e86"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab832bb930b4890f10fc77dcaba12a6e9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ab832bb930b4890f10fc77dcaba12a6e9">model_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:ab832bb930b4890f10fc77dcaba12a6e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacemodel.html#ab832bb930b4890f10fc77dcaba12a6e9">More...</a><br /></td></tr>
-<tr class="separator:ab832bb930b4890f10fc77dcaba12a6e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afee0b0995d6fb4b7021336d13745e512"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#afee0b0995d6fb4b7021336d13745e512">model_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:afee0b0995d6fb4b7021336d13745e512"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacemodel.html#afee0b0995d6fb4b7021336d13745e512">More...</a><br /></td></tr>
-<tr class="separator:afee0b0995d6fb4b7021336d13745e512"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a175159e99d72bca63093895c83a30adf"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a175159e99d72bca63093895c83a30adf">model_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:a175159e99d72bca63093895c83a30adf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a radial position.  <a href="namespacemodel.html#a175159e99d72bca63093895c83a30adf">More...</a><br /></td></tr>
-<tr class="separator:a175159e99d72bca63093895c83a30adf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0c13b272f321765061b7ea58d78497e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ac0c13b272f321765061b7ea58d78497e">model_get_sxrem_ratio</a> (this, te)</td></tr>
-<tr class="memdesc:ac0c13b272f321765061b7ea58d78497e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity ratio.  <a href="namespacemodel.html#ac0c13b272f321765061b7ea58d78497e">More...</a><br /></td></tr>
-<tr class="separator:ac0c13b272f321765061b7ea58d78497e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a95306c7639e4da0cd4073425130e06db"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a95306c7639e4da0cd4073425130e06db">model_get_ne_type</a> (this)</td></tr>
-<tr class="memdesc:a95306c7639e4da0cd4073425130e06db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density type as a string.  <a href="namespacemodel.html#a95306c7639e4da0cd4073425130e06db">More...</a><br /></td></tr>
-<tr class="separator:a95306c7639e4da0cd4073425130e06db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75ad061f96afc97aeb8b46b0c283036b"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a75ad061f96afc97aeb8b46b0c283036b">model_get_te_type</a> (this)</td></tr>
-<tr class="memdesc:a75ad061f96afc97aeb8b46b0c283036b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature type as a string.  <a href="namespacemodel.html#a75ad061f96afc97aeb8b46b0c283036b">More...</a><br /></td></tr>
-<tr class="separator:a75ad061f96afc97aeb8b46b0c283036b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73d692cfc1ac523d21357b613aaa42c0"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a73d692cfc1ac523d21357b613aaa42c0">model_get_ti_type</a> (this)</td></tr>
-<tr class="memdesc:a73d692cfc1ac523d21357b613aaa42c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature type as a string.  <a href="namespacemodel.html#a73d692cfc1ac523d21357b613aaa42c0">More...</a><br /></td></tr>
-<tr class="separator:a73d692cfc1ac523d21357b613aaa42c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af88bfde139873aee78ab9f9279998be4"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#af88bfde139873aee78ab9f9279998be4">model_get_sxrem_type</a> (this, index)</td></tr>
-<tr class="memdesc:af88bfde139873aee78ab9f9279998be4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity type as a string.  <a href="namespacemodel.html#af88bfde139873aee78ab9f9279998be4">More...</a><br /></td></tr>
-<tr class="separator:af88bfde139873aee78ab9f9279998be4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad1458152390260f06d7442de36bdbd98"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad1458152390260f06d7442de36bdbd98">model_get_signal_factor</a> (this, index)</td></tr>
-<tr class="memdesc:ad1458152390260f06d7442de36bdbd98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the scale factor for a signal.  <a href="namespacemodel.html#ad1458152390260f06d7442de36bdbd98">More...</a><br /></td></tr>
-<tr class="separator:ad1458152390260f06d7442de36bdbd98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a6a2f06f9f5990ecfdc9813ed5d3eba11">model_get_signal_offset</a> (this, index)</td></tr>
-<tr class="memdesc:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the offset factor for a signal.  <a href="namespacemodel.html#a6a2f06f9f5990ecfdc9813ed5d3eba11">More...</a><br /></td></tr>
-<tr class="separator:a6a2f06f9f5990ecfdc9813ed5d3eba11"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae92f9c0950727e71610455ca8498fca1"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae92f9c0950727e71610455ca8498fca1">model_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:ae92f9c0950727e71610455ca8498fca1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Determines if a parameter id is a reconstruction parameter.  <a href="namespacemodel.html#ae92f9c0950727e71610455ca8498fca1">More...</a><br /></td></tr>
-<tr class="separator:ae92f9c0950727e71610455ca8498fca1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a039d5b9b4b15952e126981a5793751af"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a039d5b9b4b15952e126981a5793751af">model_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a039d5b9b4b15952e126981a5793751af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the model.  <a href="namespacemodel.html#a039d5b9b4b15952e126981a5793751af">More...</a><br /></td></tr>
-<tr class="separator:a039d5b9b4b15952e126981a5793751af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a48e3cd47a1f1eb36bcf5e846a9fe7c7e">model_save_state</a> (this)</td></tr>
-<tr class="memdesc:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the model.  <a href="namespacemodel.html#a48e3cd47a1f1eb36bcf5e846a9fe7c7e">More...</a><br /></td></tr>
-<tr class="separator:a48e3cd47a1f1eb36bcf5e846a9fe7c7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae40d3eb6e7863b5ca97a108a8b6eec45">model_converge</a> (this, num_iter, iou, eq_comm, param_name)</td></tr>
-<tr class="memdesc:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the model.  <a href="namespacemodel.html#ae40d3eb6e7863b5ca97a108a8b6eec45">More...</a><br /></td></tr>
-<tr class="separator:ae40d3eb6e7863b5ca97a108a8b6eec45"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2055f9dc71e9969f8910a24b0c82d972"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a2055f9dc71e9969f8910a24b0c82d972">model_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a2055f9dc71e9969f8910a24b0c82d972"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the model to an output file.  <a href="namespacemodel.html#a2055f9dc71e9969f8910a24b0c82d972">More...</a><br /></td></tr>
-<tr class="separator:a2055f9dc71e9969f8910a24b0c82d972"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf5b18436f431c1bd3243d7e12fba98b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aaf5b18436f431c1bd3243d7e12fba98b">model_def_result</a> (this, result_ncid, maxnsteps_dim_id, string_len_dim_id)</td></tr>
-<tr class="memdesc:aaf5b18436f431c1bd3243d7e12fba98b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespacemodel.html#aaf5b18436f431c1bd3243d7e12fba98b">More...</a><br /></td></tr>
-<tr class="separator:aaf5b18436f431c1bd3243d7e12fba98b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a77c457d5c6988911e42b59b5995b28d5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a77c457d5c6988911e42b59b5995b28d5">model_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:a77c457d5c6988911e42b59b5995b28d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespacemodel.html#a77c457d5c6988911e42b59b5995b28d5">More...</a><br /></td></tr>
-<tr class="separator:a77c457d5c6988911e42b59b5995b28d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45af998614307b2cfeba0847683c5ba6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a45af998614307b2cfeba0847683c5ba6">model_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a45af998614307b2cfeba0847683c5ba6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespacemodel.html#a45af998614307b2cfeba0847683c5ba6">More...</a><br /></td></tr>
-<tr class="separator:a45af998614307b2cfeba0847683c5ba6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ae5a83497a4f9218db4bb32a5ca7825e1">model_restart</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart the model.  <a href="namespacemodel.html#ae5a83497a4f9218db4bb32a5ca7825e1">More...</a><br /></td></tr>
-<tr class="separator:ae5a83497a4f9218db4bb32a5ca7825e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63291119dd65decfd79cf350ebfea9f3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a63291119dd65decfd79cf350ebfea9f3">model_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a63291119dd65decfd79cf350ebfea9f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the model state to children.  <a href="namespacemodel.html#a63291119dd65decfd79cf350ebfea9f3">More...</a><br /></td></tr>
-<tr class="separator:a63291119dd65decfd79cf350ebfea9f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53ef30c317240b59f4dd0fc23378ec55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a53ef30c317240b59f4dd0fc23378ec55">model_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a53ef30c317240b59f4dd0fc23378ec55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child model state to the parent.  <a href="namespacemodel.html#a53ef30c317240b59f4dd0fc23378ec55">More...</a><br /></td></tr>
-<tr class="separator:a53ef30c317240b59f4dd0fc23378ec55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a27009da4938ee0706157b3bad05bbf9d"><td class="memItemLeft" align="right" valign="top"><a id="a27009da4938ee0706157b3bad05bbf9d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a27009da4938ee0706157b3bad05bbf9d">model_ne_unit_id</a> = 0</td></tr>
-<tr class="memdesc:a27009da4938ee0706157b3bad05bbf9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electron density units. <br /></td></tr>
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-<tr class="memitem:a5b31b2e1320a15347fcd70fefc4b4594"><td class="memItemLeft" align="right" valign="top"><a id="a5b31b2e1320a15347fcd70fefc4b4594"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a5b31b2e1320a15347fcd70fefc4b4594">model_ne_min_id</a> = 1</td></tr>
-<tr class="memdesc:a5b31b2e1320a15347fcd70fefc4b4594"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron density. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a219879b1157e2b3db06187739c411fc1">model_te_min_id</a> = 2</td></tr>
-<tr class="memdesc:a219879b1157e2b3db06187739c411fc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron temperature. <br /></td></tr>
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-<tr class="memitem:aae6c33103f73eddc33eb7ed63798d608"><td class="memItemLeft" align="right" valign="top"><a id="aae6c33103f73eddc33eb7ed63798d608"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#aae6c33103f73eddc33eb7ed63798d608">model_ti_min_id</a> = 3</td></tr>
-<tr class="memdesc:aae6c33103f73eddc33eb7ed63798d608"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the minimum electron temperature. <br /></td></tr>
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-<tr class="memitem:ad2b6317fad31953186ed8f7a7fad9303"><td class="memItemLeft" align="right" valign="top"><a id="ad2b6317fad31953186ed8f7a7fad9303"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#ad2b6317fad31953186ed8f7a7fad9303">model_pressure_fraction_id</a> = 4</td></tr>
-<tr class="memdesc:ad2b6317fad31953186ed8f7a7fad9303"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion fraction of the pressure. <br /></td></tr>
-<tr class="separator:ad2b6317fad31953186ed8f7a7fad9303"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a36e70a1922b00ed72f14ca70727782ce"><td class="memItemLeft" align="right" valign="top"><a id="a36e70a1922b00ed72f14ca70727782ce"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a36e70a1922b00ed72f14ca70727782ce">model_sxrem_min_id</a> = 5</td></tr>
-<tr class="memdesc:a36e70a1922b00ed72f14ca70727782ce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion fraction of the pressure. <br /></td></tr>
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-<tr class="memitem:a25437a3fa32d82cbbd30726d8e8a03d7"><td class="memItemLeft" align="right" valign="top"><a id="a25437a3fa32d82cbbd30726d8e8a03d7"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a25437a3fa32d82cbbd30726d8e8a03d7">model_coosig_wgts_id</a> = 6</td></tr>
-<tr class="memdesc:a25437a3fa32d82cbbd30726d8e8a03d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the combination signal weights. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a0fac5822f775417cfde63cc60ba7fc95">model_signal_factor_id</a> = 7</td></tr>
-<tr class="memdesc:a0fac5822f775417cfde63cc60ba7fc95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the modeled signal scale factors. <br /></td></tr>
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-<tr class="memitem:a5859376b779689c5e2bd30c6defea193"><td class="memItemLeft" align="right" valign="top"><a id="a5859376b779689c5e2bd30c6defea193"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a5859376b779689c5e2bd30c6defea193">model_signal_offset_id</a> = 8</td></tr>
-<tr class="memdesc:a5859376b779689c5e2bd30c6defea193"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the modeled signal offset factors. <br /></td></tr>
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-<tr class="memitem:a8ec59b67723de5350e1243bd13d57308"><td class="memItemLeft" align="right" valign="top"><a id="a8ec59b67723de5350e1243bd13d57308"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a8ec59b67723de5350e1243bd13d57308">model_ne_grid_id</a> = 9</td></tr>
-<tr class="memdesc:a8ec59b67723de5350e1243bd13d57308"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion density grid. <br /></td></tr>
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-<tr class="memitem:a252cedeee618d79814de7327ef8838d1"><td class="memItemLeft" align="right" valign="top"><a id="a252cedeee618d79814de7327ef8838d1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a252cedeee618d79814de7327ef8838d1">model_te_grid_id</a> = 10</td></tr>
-<tr class="memdesc:a252cedeee618d79814de7327ef8838d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the electrion temperature grid. <br /></td></tr>
-<tr class="separator:a252cedeee618d79814de7327ef8838d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a6ad268d4278577494f334adebb6896"><td class="memItemLeft" align="right" valign="top"><a id="a7a6ad268d4278577494f334adebb6896"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#a7a6ad268d4278577494f334adebb6896">model_ti_grid_id</a> = 11</td></tr>
-<tr class="memdesc:a7a6ad268d4278577494f334adebb6896"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the ion temperature grid. <br /></td></tr>
-<tr class="separator:a7a6ad268d4278577494f334adebb6896"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd7336c016d4b58107cc3c8cf899fea9"><td class="memItemLeft" align="right" valign="top"><a id="acd7336c016d4b58107cc3c8cf899fea9"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#acd7336c016d4b58107cc3c8cf899fea9">model_sxrem_grid_id</a> = 12</td></tr>
-<tr class="memdesc:acd7336c016d4b58107cc3c8cf899fea9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter id for the soft x-ray emissivity grid. <br /></td></tr>
-<tr class="separator:acd7336c016d4b58107cc3c8cf899fea9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adee0096c51cfba8e688b2e2f073ec866"><td class="memItemLeft" align="right" valign="top"><a id="adee0096c51cfba8e688b2e2f073ec866"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel.html#adee0096c51cfba8e688b2e2f073ec866">ev_per_joule</a> = one/1.602e-19_rprec</td></tr>
-<tr class="memdesc:adee0096c51cfba8e688b2e2f073ec866"><td class="mdescLeft">&#160;</td><td class="mdescRight">Conversion from Joules to eV. <br /></td></tr>
-<tr class="separator:adee0096c51cfba8e688b2e2f073ec866"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structmodel_1_1model__class.html">model_class</a>. The model contains information not specific to the equilibrium. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aba4858fbaa5f5546819d80132d41c204"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aba4858fbaa5f5546819d80132d41c204">&#9670;&nbsp;</a></span>model_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>) function, pointer model::model_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=data_name_length), intent(in)&#160;</td>
-          <td class="paramname"><em>ne_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrem_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), intent(in)&#160;</td>
-          <td class="paramname"><em>te_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), intent(in)&#160;</td>
-          <td class="paramname"><em>ti_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>ne_unit</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>ne_min</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>te_min</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>ti_min</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrem_min</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>pressure_fraction</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structemission_1_1emission__class.html">emission_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>emission</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>equilibrium</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrem_te</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrem_ratio</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>resonace_range</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>coosig_wgts</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>signal_factor</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>signal_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>int_params</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> containing an <a class="el" href="namespaceequilibrium.html">equilibrium</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmodel_1_1model__class.html">model_class</a> object. </p><dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_type</td><td>Model type for the electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_type</td><td>Model type for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te_type</td><td>Model type for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti_type</td><td>Model type for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_unit</td><td>Scaleing of the electron denisty. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_min</td><td>Minimum electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te_min</td><td>Minimum electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti_min</td><td>Minimum ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_min</td><td>Minimum soft x-ray emission. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pressure_fraction</td><td>Fraction of the pressure provided by electrons. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">equilibrium</td><td>An instance of an <a class="el" href="namespaceequilibrium.html">equilibrium</a>. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_te</td><td>Soft x-ray ratio function te. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname"><a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a></td><td>Soft x-ray ratio function ratio. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">resonace_range</td><td>ECE resonance interval. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coosig_wgts</td><td>Combination Signal Weights </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">not_converged</td><td>If true the equilibrium was constructed in an unconverged state. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_factor</td><td>Array of signal factors to scale model signals by. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_offset</td><td>Array of signal factors to offset model signals by. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">int_params</td><td>Parameters for the integration method. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmodel_1_1model__class.html">model_class</a> object. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000005">Todo:</a></b></dt><dd>FIXME: Name here shouldn't have vmec in it </dd></dl>
-
-</div>
-</div>
-<a id="ae40d3eb6e7863b5ca97a108a8b6eec45"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae40d3eb6e7863b5ca97a108a8b6eec45">&#9670;&nbsp;</a></span>model_converge()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">logical function model::model_converge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>num_iter</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the model. </p>
-<p>This solves the equilibirum model and computes modeled values. The modeled values computed are the grided model values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">num_iter</td><td>Counter to track the number of iterations. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the file to write logs to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for the equilibrium. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of the peturbed parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the convergece was sucessful and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="aaf5b18436f431c1bd3243d7e12fba98b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaf5b18436f431c1bd3243d7e12fba98b">&#9670;&nbsp;</a></span>model_def_result()</h2>
-
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-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_def_result </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>maxnsteps_dim_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>string_len_dim_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Define NetCDF variables for the result file. </p>
-<p>Defines dimensions and variables for the model contribution of the result file. Multi dimensional arrays need to be transposed so arrays appear in the correct order in non fortran languages.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">maxnsetps_dim_id</td><td>NetCDF dimension id of the number of steps dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2a265c388bc36a30cc61a1635f9353d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2a265c388bc36a30cc61a1635f9353d6">&#9670;&nbsp;</a></span>model_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structmodel_1_1model__class.html">model_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae9f5014e55090d54e89563d33a415813"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae9f5014e55090d54e89563d33a415813">&#9670;&nbsp;</a></span>model_get_gp_ne_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ne_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the two indicies. </p>
-<p>Gets the electron density gp kernel for two points. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="acd168d6dda98d564e8e7bf48f96ddd57"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd168d6dda98d564e8e7bf48f96ddd57">&#9670;&nbsp;</a></span>model_get_gp_ne_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function model::model_get_gp_ne_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron density gp kernel hyper parameters. </p>
-<p>Returns the number of availible hyper parameters in the electron density guassian process kernel.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a322214757aa18279bce1c072d523b563"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a322214757aa18279bce1c072d523b563">&#9670;&nbsp;</a></span>model_get_gp_ne_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ne_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and index. </p>
-<p>Gets the electron density gp kernel for point and index. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a83e3312f26b3c4370474d176aec26a24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a83e3312f26b3c4370474d176aec26a24">&#9670;&nbsp;</a></span>model_get_gp_ne_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ne_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and position. </p>
-<p>Gets the electron density gp kernel for point and index. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a8b1a92b704161db3a03beeebaa6701eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8b1a92b704161db3a03beeebaa6701eb">&#9670;&nbsp;</a></span>model_get_gp_sxrem_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_sxrem_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the two indicies. </p>
-<p>Gets the soft x-ray emissivity gp kernel for two points. This also sets the min value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="ad8cd43a44f04d67820bceeb1b6f774ed"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad8cd43a44f04d67820bceeb1b6f774ed">&#9670;&nbsp;</a></span>model_get_gp_sxrem_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function model::model_get_gp_sxrem_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of soft x-ray emission gp kernel hyper parameters. </p>
-<p>Returns the number of availible hyper parameters in the soft x-ray emission guassian process kernel.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="aa19addbe2bed2a528c8b8bf222707e86"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa19addbe2bed2a528c8b8bf222707e86">&#9670;&nbsp;</a></span>model_get_gp_sxrem_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_sxrem_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and index. </p>
-<p>Gets the soft x-ray emissivity gp kernel for point and index. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="ab832bb930b4890f10fc77dcaba12a6e9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab832bb930b4890f10fc77dcaba12a6e9">&#9670;&nbsp;</a></span>model_get_gp_sxrem_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_sxrem_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and position. </p>
-<p>Gets the soft x-ray emissivity gp kernel for point and index. This also sets the min value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile to use. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a1a925a4cac4f8ccf8fc3ce72184ea9a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1a925a4cac4f8ccf8fc3ce72184ea9a6">&#9670;&nbsp;</a></span>model_get_gp_te_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_te_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the two indicies. </p>
-<p>Gets the electron temperature gp kernel for two points. This also sets the min value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="a62057acc8ea46a668223007226002f67"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a62057acc8ea46a668223007226002f67">&#9670;&nbsp;</a></span>model_get_gp_te_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function model::model_get_gp_te_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron temperature gp kernel hyper parameters. </p>
-<p>Returns the number of availible hyper parameters in the electron temperature guassian process kernel.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="aad7ae3b13fa5cab9ae3ca39c616ac247"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aad7ae3b13fa5cab9ae3ca39c616ac247">&#9670;&nbsp;</a></span>model_get_gp_te_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_te_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and index. </p>
-<p>Gets the electron temperature gp kernel for point and index. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="ac5f8281c5691b8c6fb46d239f6e5add3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac5f8281c5691b8c6fb46d239f6e5add3">&#9670;&nbsp;</a></span>model_get_gp_te_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_te_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and position. </p>
-<p>Gets the electron temperature gp kernel for point and index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a44a83ac8ff0d2aa56bb6e0c09808ea60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a44a83ac8ff0d2aa56bb6e0c09808ea60">&#9670;&nbsp;</a></span>model_get_gp_ti_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ti_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the two indicies. </p>
-<p>Gets the ion temperature gp kernel for two points. This also sets the min value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="aee6d3229029c80f76294f739644e94fe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aee6d3229029c80f76294f739644e94fe">&#9670;&nbsp;</a></span>model_get_gp_ti_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function model::model_get_gp_ti_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of ion temperature gp kernel hyper parameters. </p>
-<p>Returns the number of availible hyper parameters in the ion temperature guassian process kernel.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="af23470f0527e1e1ba842b4874b53665f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af23470f0527e1e1ba842b4874b53665f">&#9670;&nbsp;</a></span>model_get_gp_ti_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ti_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and index. </p>
-<p>Gets the ion temperature gp kernel for point and index. This also sets the scaling and min values.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a65bab13e633f9a0b434163439a3cbb2c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a65bab13e633f9a0b434163439a3cbb2c">&#9670;&nbsp;</a></span>model_get_gp_ti_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_gp_ti_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and position. </p>
-<p>Gets the electron temperature gp kernel for point and index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Cartesian position to get the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a68ba795287919ecfea50079142f554aa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a68ba795287919ecfea50079142f554aa">&#9670;&nbsp;</a></span>model_get_ne_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer model::model_get_ne_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density profile af array. </p>
-<p>Returns the af array for the electron density profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a1be0e1afe0b9d73209fccaced1cb0436"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1be0e1afe0b9d73209fccaced1cb0436">&#9670;&nbsp;</a></span>model_get_ne_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_ne_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a cartesian position. </p>
-<p>Gets the electron density at a cartesian position. Electron density is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a6d398cba565b1c43bb47e56af3617f02">model_class::ne_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a38b9f520587c2be4b1cef145bba73e63"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a38b9f520587c2be4b1cef145bba73e63">&#9670;&nbsp;</a></span>model_get_ne_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_ne_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a radial position. </p>
-<p>Gets the electron density at a radial position. Electron density is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a6d398cba565b1c43bb47e56af3617f02">model_class::ne_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at r. </dd></dl>
-
-</div>
-</div>
-<a id="a95306c7639e4da0cd4073425130e06db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a95306c7639e4da0cd4073425130e06db">&#9670;&nbsp;</a></span>model_get_ne_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function model::model_get_ne_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density type as a string. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the electron density type. </dd></dl>
-
-</div>
-</div>
-<a id="a0410fe025b7317ff0256580b6fdc8e4a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0410fe025b7317ff0256580b6fdc8e4a">&#9670;&nbsp;</a></span>model_get_param_id()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function model::model_get_param_id </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the id for a parameter. </p>
-<p>Gets a model reconstruction parameter. If the id is not a model parameter, it is deferred to the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of a reconstruction parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The id for a reconstruction parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a3ca24f831d2002ee26314de823344ef6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3ca24f831d2002ee26314de823344ef6">&#9670;&nbsp;</a></span>model_get_param_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character(len=data_name_length) function model::model_get_param_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the name of a model parameter. </p>
-<p>Gets a model reconstruction parameter name. If the id is not a model parameter, it is deferred to the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a1505f0e988ed7337652bf62874052820"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1505f0e988ed7337652bf62874052820">&#9670;&nbsp;</a></span>model_get_param_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_param_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the value of a model parameter. </p>
-<p>Gets a model reconstruction parameter value. If the id is not a model parameter, it is deferred to the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the parameter. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>Model parameter do not use the indicies. However an equilibrium might. </dd></dl>
-
-</div>
-</div>
-<a id="ad1458152390260f06d7442de36bdbd98"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad1458152390260f06d7442de36bdbd98">&#9670;&nbsp;</a></span>model_get_signal_factor()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_signal_factor </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the scale factor for a signal. </p>
-<p>Gets the model scale factor. The scaling defaults to 1.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the scale factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Scale factor value. </dd></dl>
-
-</div>
-</div>
-<a id="a6a2f06f9f5990ecfdc9813ed5d3eba11"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6a2f06f9f5990ecfdc9813ed5d3eba11">&#9670;&nbsp;</a></span>model_get_signal_offset()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_signal_offset </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the offset factor for a signal. </p>
-<p>Gets the model offset factor. The offset defaults to 0.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the scale factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Scale factor value. </dd></dl>
-
-</div>
-</div>
-<a id="a84634e1e0804a4e8d6d2b9fb8e1ccc1f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a84634e1e0804a4e8d6d2b9fb8e1ccc1f">&#9670;&nbsp;</a></span>model_get_sxrem_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer model::model_get_sxrem_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity profile af array. </p>
-<p>Returns the af array for the electron density profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="afee0b0995d6fb4b7021336d13745e512"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afee0b0995d6fb4b7021336d13745e512">&#9670;&nbsp;</a></span>model_get_sxrem_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_sxrem_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a cartesian position. </p>
-<p>Gets the soft x-ray emissivity at a cartesian position. Soft x-ray emissivity is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#ab51bbd264336563e4acece72fb009430">model_class::sxrem_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity model. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a175159e99d72bca63093895c83a30adf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a175159e99d72bca63093895c83a30adf">&#9670;&nbsp;</a></span>model_get_sxrem_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_sxrem_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a radial position. </p>
-<p>Gets the soft x-ray emissivity at a radial position. Soft x-ray emissivity is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#ab51bbd264336563e4acece72fb009430">model_class::sxrem_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity model. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at r. </dd></dl>
-
-</div>
-</div>
-<a id="ac0c13b272f321765061b7ea58d78497e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0c13b272f321765061b7ea58d78497e">&#9670;&nbsp;</a></span>model_get_sxrem_ratio()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_sxrem_ratio </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>te</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity ratio. </p>
-<p>Gets the soft x-ray emissivity at a radial position. Soft x-ray emissivity is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#ab51bbd264336563e4acece72fb009430">model_class::sxrem_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>Radial position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Distance to the camera. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity model. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at r. </dd></dl>
-
-</div>
-</div>
-<a id="af88bfde139873aee78ab9f9279998be4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af88bfde139873aee78ab9f9279998be4">&#9670;&nbsp;</a></span>model_get_sxrem_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function model::model_get_sxrem_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity type as a string. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity model. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the soft x-ray emissivity type. </dd></dl>
-
-</div>
-</div>
-<a id="ab42eb366f86f993be7af44899cd04ef9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab42eb366f86f993be7af44899cd04ef9">&#9670;&nbsp;</a></span>model_get_te_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer model::model_get_te_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature profile af array. </p>
-<p>Returns the af array for the electron temperature profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="abea4081e3dbf6e1f04898bf6a3e03f25"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abea4081e3dbf6e1f04898bf6a3e03f25">&#9670;&nbsp;</a></span>model_get_te_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_te_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a cartesian position. </p>
-<p>Gets the electron temperature at a cartesian position. Electron temperature is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a643ab844758277b242ebde4524cbf2a6">model_class::te_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a7a9bb4ec0f04d8323ba7cffd6905b4fe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7a9bb4ec0f04d8323ba7cffd6905b4fe">&#9670;&nbsp;</a></span>model_get_te_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_te_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a radial position. </p>
-<p>Gets the electron temperature at a radial position. Electron temperature is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a643ab844758277b242ebde4524cbf2a6">model_class::te_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at r. </dd></dl>
-
-</div>
-</div>
-<a id="a75ad061f96afc97aeb8b46b0c283036b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a75ad061f96afc97aeb8b46b0c283036b">&#9670;&nbsp;</a></span>model_get_te_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function model::model_get_te_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature type as a string. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the electron temperature type. </dd></dl>
-
-</div>
-</div>
-<a id="a0746473f984e45316fb160fd9053c457"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0746473f984e45316fb160fd9053c457">&#9670;&nbsp;</a></span>model_get_ti_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer model::model_get_ti_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature profile af array. </p>
-<p>Returns the af array for the ion temperature profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a186a54343511101548c76a481a178354"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a186a54343511101548c76a481a178354">&#9670;&nbsp;</a></span>model_get_ti_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_ti_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a cartesian position. </p>
-<p>Gets the ion temperature at a cartesian position. Ion temperature is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a1cf45a341529b781b9c73288e3c71960">model_class::ti_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a66850f85ec8926e37ed2d5919114dd03"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a66850f85ec8926e37ed2d5919114dd03">&#9670;&nbsp;</a></span>model_get_ti_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function model::model_get_ti_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a radial position. </p>
-<p>Gets the ion temperature at a radial position. Electron temperature is computed based on the type of <a class="el" href="structmodel_1_1model__class.html#a1cf45a341529b781b9c73288e3c71960">model_class::ti_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at r. </dd></dl>
-
-</div>
-</div>
-<a id="a73d692cfc1ac523d21357b613aaa42c0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a73d692cfc1ac523d21357b613aaa42c0">&#9670;&nbsp;</a></span>model_get_ti_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function model::model_get_ti_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature type as a string. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the ion temperature type. </dd></dl>
-
-</div>
-</div>
-<a id="ae92f9c0950727e71610455ca8498fca1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae92f9c0950727e71610455ca8498fca1">&#9670;&nbsp;</a></span>model_is_recon_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function model::model_is_recon_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Determines if a parameter id is a reconstruction parameter. </p>
-<p>Determines if a parameter id is a reconstruction parameter. If the parameter is not a model parameter, it is deferred to the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the id is a reconstruction parameter and false if not. </dd></dl>
-
-</div>
-</div>
-<a id="a039d5b9b4b15952e126981a5793751af"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a039d5b9b4b15952e126981a5793751af">&#9670;&nbsp;</a></span>model_reset_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_reset_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reset the internal state of the model. </p>
-<p>Clears out the model state flags then resets the equilibrium. This resets the profile grid if they were changed.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A equilibrium_class instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae5a83497a4f9218db4bb32a5ca7825e1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae5a83497a4f9218db4bb32a5ca7825e1">&#9670;&nbsp;</a></span>model_restart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_restart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Restart the model. </p>
-<p>Restarts the model from the result file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to read variables from. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a48e3cd47a1f1eb36bcf5e846a9fe7c7e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a48e3cd47a1f1eb36bcf5e846a9fe7c7e">&#9670;&nbsp;</a></span>model_save_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_save_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Save the internal state of the model. </p>
-<p>Clears out the model state flags then resets the equilibrium.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A equilibrium_class instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8740a84b3eca0851c05d4727043bdd3d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8740a84b3eca0851c05d4727043bdd3d">&#9670;&nbsp;</a></span>model_set_grid_params()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_set_grid_params </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>size</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets grid parameters. </p>
-<p>Sets the start and step size of the radial grids.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">size</td><td>Number of grid points. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae48bf1f364a222eee5f9636329693c9d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae48bf1f364a222eee5f9636329693c9d">&#9670;&nbsp;</a></span>model_set_grid_profiles()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_set_grid_profiles </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets grid profile values. </p>
-<p>Sets the grided profiles from the current equilibrium mode.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5b5f5493e6eaa17053a53bdfb6efcfdb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5b5f5493e6eaa17053a53bdfb6efcfdb">&#9670;&nbsp;</a></span>model_set_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_set_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the value of a reconstruction model parameter. </p>
-<p>Sets a model reconstruction parameter. If the id is not a model parameter, it is deferred to the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>Model parameter do not use the indicies. However an equilibrium might. </dd></dl>
-
-</div>
-</div>
-<a id="a53ef30c317240b59f4dd0fc23378ec55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53ef30c317240b59f4dd0fc23378ec55">&#9670;&nbsp;</a></span>model_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine model::model_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child model state to the parent. </p>
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-<p>Syncronize the model state to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-<p>Write out the model to an output file. </p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
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-          <td>(</td>
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-          <td class="paramname"><em>this</em>, </td>
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-<p>Write inital data to NetCDF result file. </p>
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-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-  </table>
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-</div>
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-          <td class="memname">subroutine model::model_write_step_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
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-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
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-<p>Write step data to NetCDF result file. </p>
-<p>This write the data that can change each reconstruction step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmodel_1_1model__class.html">model_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to write variables to. </td></tr>
-  </table>
-  </dd>
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-<div class="header">
-  <div class="summary">
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">model_state Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains parameters defining the bit positions for flags that mark changes in different parts of the model.  
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemodel__state.html#ac26f74486eb854b9e8d57b0ab737f1a2">model_state_all_off</a> = 0</td></tr>
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-
-<p>Implements motional stark effect diagnostic. Defines the base class of the type <a class="el" href="structmse_1_1mse__class.html">mse_class</a>.  
-<a href="namespacemse.html#details">More...</a></p>
-<table class="memberdecls">
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-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmse_1_1mse__class.html">mse_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a mse signal.  <a href="structmse_1_1mse__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="memitem:a8690837673e5dd864259bc5478993a1a"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structmse_1_1mse__class.html">mse_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#a8690837673e5dd864259bc5478993a1a">mse_construct_vec</a> (point, view_start, view_end, beam_start, beam_end, in_degrees, is_ratio)</td></tr>
-<tr class="memdesc:a8690837673e5dd864259bc5478993a1a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object representing a motional stark effect diagnostic.  <a href="namespacemse.html#a8690837673e5dd864259bc5478993a1a">More...</a><br /></td></tr>
-<tr class="separator:a8690837673e5dd864259bc5478993a1a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8e0f3fa5bec0a86a9fade02afa25cb5"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structmse_1_1mse__class.html">mse_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#ae8e0f3fa5bec0a86a9fade02afa25cb5">mse_construct_rad</a> (point, alpha, omega, delta, theta, in_degrees, is_ratio)</td></tr>
-<tr class="memdesc:ae8e0f3fa5bec0a86a9fade02afa25cb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object representing a motional stark effect diagnostic.  <a href="namespacemse.html#ae8e0f3fa5bec0a86a9fade02afa25cb5">More...</a><br /></td></tr>
-<tr class="separator:ae8e0f3fa5bec0a86a9fade02afa25cb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc15d7634705d68f50d7d5ce8f6f0f8b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#afc15d7634705d68f50d7d5ce8f6f0f8b">mse_destruct</a> (this)</td></tr>
-<tr class="memdesc:afc15d7634705d68f50d7d5ce8f6f0f8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object.  <a href="namespacemse.html#afc15d7634705d68f50d7d5ce8f6f0f8b">More...</a><br /></td></tr>
-<tr class="separator:afc15d7634705d68f50d7d5ce8f6f0f8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3a078696f20855ea14f591c8f5f66db7"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#a3a078696f20855ea14f591c8f5f66db7">mse_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a3a078696f20855ea14f591c8f5f66db7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespacemse.html#a3a078696f20855ea14f591c8f5f66db7">More...</a><br /></td></tr>
-<tr class="separator:a3a078696f20855ea14f591c8f5f66db7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:addf00f4ab7ba2ce834448e98694811c1"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#addf00f4ab7ba2ce834448e98694811c1">mse_get_type</a> (this)</td></tr>
-<tr class="memdesc:addf00f4ab7ba2ce834448e98694811c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the mse type.  <a href="namespacemse.html#addf00f4ab7ba2ce834448e98694811c1">More...</a><br /></td></tr>
-<tr class="separator:addf00f4ab7ba2ce834448e98694811c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a97e4b8b2c5065f5d60ad76d06a74027c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#a97e4b8b2c5065f5d60ad76d06a74027c">mse_get_header</a> (this, header)</td></tr>
-<tr class="memdesc:a97e4b8b2c5065f5d60ad76d06a74027c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespacemse.html#a97e4b8b2c5065f5d60ad76d06a74027c">More...</a><br /></td></tr>
-<tr class="separator:a97e4b8b2c5065f5d60ad76d06a74027c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Variables</h2></td></tr>
-<tr class="memitem:a19664eef147f44bab3dfcae3328f8849"><td class="memItemLeft" align="right" valign="top"><a id="a19664eef147f44bab3dfcae3328f8849"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#a19664eef147f44bab3dfcae3328f8849">mse_degrees_flag</a> = 1</td></tr>
-<tr class="memdesc:a19664eef147f44bab3dfcae3328f8849"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the use coil response flag. <br /></td></tr>
-<tr class="separator:a19664eef147f44bab3dfcae3328f8849"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a777bf95a909d70eeec7113dd8bfb1151"><td class="memItemLeft" align="right" valign="top"><a id="a777bf95a909d70eeec7113dd8bfb1151"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse.html#a777bf95a909d70eeec7113dd8bfb1151">mse_ratio_flag</a> = 2</td></tr>
-<tr class="memdesc:a777bf95a909d70eeec7113dd8bfb1151"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the force coil response flag. <br /></td></tr>
-<tr class="separator:a777bf95a909d70eeec7113dd8bfb1151"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Implements motional stark effect diagnostic. Defines the base class of the type <a class="el" href="structmse_1_1mse__class.html">mse_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ae8e0f3fa5bec0a86a9fade02afa25cb5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae8e0f3fa5bec0a86a9fade02afa25cb5">&#9670;&nbsp;</a></span>mse_construct_rad()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>) function, pointer mse::mse_construct_rad </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>point</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>alpha</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>omega</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>delta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ratio</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object representing a motional stark effect diagnostic. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. Uses angle representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">point</td><td>Measurement point of the mse diagnostic. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">omega</td><td>Angle between the neutral beam and the toroidal in the horizontal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">alpha</td><td>Angle between the view chord and the toroidal in the horizontal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">delta</td><td>Pitch angle to the horizontal and the neutral beam. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>Pitch angle to the horizontal and the view chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Channel measures degrees. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ratio</td><td>Channel measures ratio. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a8690837673e5dd864259bc5478993a1a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8690837673e5dd864259bc5478993a1a">&#9670;&nbsp;</a></span>mse_construct_vec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>) function, pointer mse::mse_construct_vec </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>point</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>view_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>view_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>beam_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>beam_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ratio</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object representing a motional stark effect diagnostic. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. Uses vector representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">point</td><td>Measurement point of the mse diagnostic. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">view_start</td><td>Starting point of the view vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">view_end</td><td>Ending point of the view vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">beam_start</td><td>Starting point of the beam vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">beam_end</td><td>Ending point of the beam vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Channel measures degrees. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ratio</td><td>Channel measures ratio. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="afc15d7634705d68f50d7d5ce8f6f0f8b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc15d7634705d68f50d7d5ce8f6f0f8b">&#9670;&nbsp;</a></span>mse_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine mse::mse_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmse_1_1mse__class.html">mse_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a97e4b8b2c5065f5d60ad76d06a74027c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a97e4b8b2c5065f5d60ad76d06a74027c">&#9670;&nbsp;</a></span>mse_get_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine mse::mse_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>Returns a description of the array indices for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmse_1_1mse__class.html">mse_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">header</td><td>Buffer arrays to write header strings to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the model and model sigma array indices. </dd></dl>
-
-</div>
-</div>
-<a id="a3a078696f20855ea14f591c8f5f66db7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3a078696f20855ea14f591c8f5f66db7">&#9670;&nbsp;</a></span>mse_get_modeled_signal()</h2>
-
-<div class="memitem">
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-          <td class="memname">real (rprec) function, dimension(4) mse::mse_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>Calculates the modeled signal by Equation 1 of Hawkes et. al. doi:10.1063/1.1149415. The polarization angle gamma_m is determined from.</p>
-<p>tan(gamma_m) = E_h/E_v (1)</p>
-<p>E_h = -[B_v*Cos(delta)*Cos(omega + alpha) + Sin(delta)*(B_r*Sin(omega) - B_t*Cos(omega)] (2)</p>
-<p>E_v = -B_v*Sin(theta)*Cos(delta)*Sin(omega + alpha)</p><ul>
-<li>Sin(theta)*Sin(delta)*(B_t*Sin(omega) + B_r*Cos(omega))</li>
-<li>Cos(theta)*Sin(delta)*(B_r*Cos(alpha) - B_t*Sin(alpha)) (3)</li>
-</ul>
-<p>The magnetic field components are defined as</p><ul>
-<li>B_r Radial component of the magnetic field</li>
-<li>B_t Toroidal component of the magnetic field</li>
-<li>B_v Vertical component of the magnetic field</li>
-</ul>
-<p>The angles are defined as</p><ul>
-<li>alpha: Projected angle between the neutral beam and B_t. Defined such that 0 is the negative toroidal direction. When 90, it is in the negative radial direction.</li>
-<li>omega: Projected angle between the view and and B_t. Defined such that 0 is the positive toroidal direction. When 90, it is in the negative radial direction.</li>
-<li>delta: Angle between the neutral beam and the horizontal. Defined such that 90 is in the negative z direction.</li>
-<li>theta: Angle between the view and the horizontal. Defined such that 90 is in the positive z direction.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structmse_1_1mse__class.html">mse_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="addf00f4ab7ba2ce834448e98694811c1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#addf00f4ab7ba2ce834448e98694811c1">&#9670;&nbsp;</a></span>mse_get_type()</h2>
-
-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function mse::mse_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmse_1_1mse__class.html">mse_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the mse type. </p>
-<p>Returns a description of the mse type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structmse_1_1mse__class.html">mse_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the mse type. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">mse_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a 'mse.' file. The file format for these files are documented in <a class="el" href="mse_dot_sec.html">Motional Stark Effect Diagnostic Dot File</a>.  
-<a href="namespacemse__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7850d8ee3f5183c45c8fdd8bdbcc9bbc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse__dot.html#a7850d8ee3f5183c45c8fdd8bdbcc9bbc">mse_dot_read</a> (mse_file, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:a7850d8ee3f5183c45c8fdd8bdbcc9bbc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an motional stark effect diagnostic dot file.  <a href="namespacemse__dot.html#a7850d8ee3f5183c45c8fdd8bdbcc9bbc">More...</a><br /></td></tr>
-<tr class="separator:a7850d8ee3f5183c45c8fdd8bdbcc9bbc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b120e22a13d0b73c4bab0b585e7c5db"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse__dot.html#a5b120e22a13d0b73c4bab0b585e7c5db">mse_dot_parse_vec</a> (mse_dot_file_ref, coordinate_type, signals, signals_created, observed, sigma, weight, first_index, in_degrees, is_ratio)</td></tr>
-<tr class="memdesc:a5b120e22a13d0b73c4bab0b585e7c5db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse motional stark effect diagnostic point defined as a vector.  <a href="namespacemse__dot.html#a5b120e22a13d0b73c4bab0b585e7c5db">More...</a><br /></td></tr>
-<tr class="separator:a5b120e22a13d0b73c4bab0b585e7c5db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a70509f00e3b50b80647c476b20f8ba2f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacemse__dot.html#a70509f00e3b50b80647c476b20f8ba2f">mse_dot_parse_ang</a> (mse_dot_file_ref, coordinate_type, signals, signals_created, observed, sigma, weight, first_index, in_degrees1, in_degrees2, is_ratio)</td></tr>
-<tr class="memdesc:a70509f00e3b50b80647c476b20f8ba2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse motional stark effect diagnostic point defined as angles.  <a href="namespacemse__dot.html#a70509f00e3b50b80647c476b20f8ba2f">More...</a><br /></td></tr>
-<tr class="separator:a70509f00e3b50b80647c476b20f8ba2f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a 'mse.' file. The file format for these files are documented in <a class="el" href="mse_dot_sec.html">Motional Stark Effect Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a70509f00e3b50b80647c476b20f8ba2f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a70509f00e3b50b80647c476b20f8ba2f">&#9670;&nbsp;</a></span>mse_dot_parse_ang()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine mse_dot::mse_dot_parse_ang </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>mse_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ratio</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse motional stark effect diagnostic point defined as angles. </p>
-<p>Parses a signle point. Points are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Point of measurement as three reals.</li>
-<li>Angles with respect to the toroidal as two reals.</li>
-<li>Angles with respect to the horizontal as two reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mse_dot_file_ref</td><td>Reference to the mse. file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an mse signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees1</td><td>Angles specified in degrees if true. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees2</td><td>Signal measures degrees if true. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ratio</td><td>Signal measures ratio if true. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5b120e22a13d0b73c4bab0b585e7c5db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5b120e22a13d0b73c4bab0b585e7c5db">&#9670;&nbsp;</a></span>mse_dot_parse_vec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine mse_dot::mse_dot_parse_vec </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>mse_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ratio</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse motional stark effect diagnostic point defined as a vector. </p>
-<p>Parses a signle point. Points are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Point of measurement as three reals.</li>
-<li>Starting point of view as three reals.</li>
-<li>Ending point of view as three reals.</li>
-<li>Starting point of beam as three reals.</li>
-<li>Ending point of beam as three reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mse_dot_file_ref</td><td>Reference to the mse. file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an mse signal. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a7850d8ee3f5183c45c8fdd8bdbcc9bbc">&#9670;&nbsp;</a></span>mse_dot_read()</h2>
-
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-          <td class="memname">subroutine mse_dot::mse_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>mse_file</em>, </td>
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-          <td class="paramtype">integer, intent(inout)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
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-          <td></td>
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-          <td>)</td>
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-<p>Read an motional stark effect diagnostic dot file. </p>
-<p>Parses the structure of a dignostic dot file and constructs a <a class="el" href="namespacemse.html">mse</a> object. Each point is parsed by mse_dot_parse_point.</p>
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-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
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-<p>Work around to fix some netcdf import problems with the Ezcdf. This module emulates the F77 interface using the F90 interface.  
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__double.html">nf_put_vara_double</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacenetcdf__inc_1_1nf__put__var__double.html">nf_put_var_double</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for writing double variables.  <a href="interfacenetcdf__inc_1_1nf__put__var__double.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a1cb8ad95b8a2a70a9ac67c5b28b502d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define a variable.  <a href="namespacenetcdf__inc.html#a1cb8ad95b8a2a70a9ac67c5b28b502d7">More...</a><br /></td></tr>
-<tr class="separator:a1cb8ad95b8a2a70a9ac67c5b28b502d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa11f5217afcfa60f5c401205b311c2cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a3359b8d6f8f6e7e9b30130d6e05a4bf3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inquire a dimension length.  <a href="namespacenetcdf__inc.html#a3359b8d6f8f6e7e9b30130d6e05a4bf3">More...</a><br /></td></tr>
-<tr class="separator:a3359b8d6f8f6e7e9b30130d6e05a4bf3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a76c40a6419496a8b43f997d8bb864052"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an string attribute.  <a href="namespacenetcdf__inc.html#a76c40a6419496a8b43f997d8bb864052">More...</a><br /></td></tr>
-<tr class="separator:a76c40a6419496a8b43f997d8bb864052"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aff3894cdedd18eb594a4be84fd7d9771"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an double attribute.  <a href="namespacenetcdf__inc.html#aff3894cdedd18eb594a4be84fd7d9771">More...</a><br /></td></tr>
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-<tr class="separator:acced04d6c828f5341f13d792092e71f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e28c0d9797d80eecc8555176b9be49d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a1e28c0d9797d80eecc8555176b9be49d">nf_put_att_real</a> (ncid, varid, name, xtype, length, rvals)</td></tr>
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-<tr class="separator:a1e28c0d9797d80eecc8555176b9be49d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae65afa5be83496eba94fe9784f4af0bb"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ae65afa5be83496eba94fe9784f4af0bb">nf_put_att_int</a> (ncid, varid, name, xtype, length, ivals)</td></tr>
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-<tr class="separator:a921168a2c55d6ad28d1121bd6d1d0f7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa327b7b2fb3a5d45ab66dc75631c5d8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:acb47a6297a198529519b9605125bb3da"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a90f1b521a37c57c43c287ccf9ce6176d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:af1131ff7946e1651c8dc06985a591760"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a integer value.  <a href="namespacenetcdf__inc.html#af1131ff7946e1651c8dc06985a591760">More...</a><br /></td></tr>
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-<tr class="memitem:a6f1396faaf917b0712cdf199b2c1d2a8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a6f1396faaf917b0712cdf199b2c1d2a8">nf_put_var_double</a> (ncid, varid, dvals)</td></tr>
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-<tr class="separator:a6f1396faaf917b0712cdf199b2c1d2a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16885d0ab73823642564a1cef98931d2"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a16885d0ab73823642564a1cef98931d2">nf_put_var_1d_double</a> (ncid, varid, dvals)</td></tr>
-<tr class="memdesc:a16885d0ab73823642564a1cef98931d2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double valued array.  <a href="namespacenetcdf__inc.html#a16885d0ab73823642564a1cef98931d2">More...</a><br /></td></tr>
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-<tr class="memitem:a0f811b4a3aae119897db4219d5652e2e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a0f811b4a3aae119897db4219d5652e2e">nf_put_var_2d_double</a> (ncid, varid, dvals)</td></tr>
-<tr class="memdesc:a0f811b4a3aae119897db4219d5652e2e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a double valued 2D array.  <a href="namespacenetcdf__inc.html#a0f811b4a3aae119897db4219d5652e2e">More...</a><br /></td></tr>
-<tr class="separator:a0f811b4a3aae119897db4219d5652e2e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a29a59d5117872e5f4bf3751bfdac3571"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a29a59d5117872e5f4bf3751bfdac3571">nf_put_var_3d_double</a> (ncid, varid, dvals)</td></tr>
-<tr class="memdesc:a29a59d5117872e5f4bf3751bfdac3571"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double valued 3D array.  <a href="namespacenetcdf__inc.html#a29a59d5117872e5f4bf3751bfdac3571">More...</a><br /></td></tr>
-<tr class="separator:a29a59d5117872e5f4bf3751bfdac3571"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae2984dcf09f9c056b21e47e82e49b374"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ae2984dcf09f9c056b21e47e82e49b374">nf_put_var_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:ae2984dcf09f9c056b21e47e82e49b374"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex value.  <a href="namespacenetcdf__inc.html#ae2984dcf09f9c056b21e47e82e49b374">More...</a><br /></td></tr>
-<tr class="separator:ae2984dcf09f9c056b21e47e82e49b374"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad56f9c003fcc788c8f22d1ad3da220d0">nf_put_var_1d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued array.  <a href="namespacenetcdf__inc.html#ad56f9c003fcc788c8f22d1ad3da220d0">More...</a><br /></td></tr>
-<tr class="separator:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a1a6fd75cd094cc4b5d07aa68586a5284">nf_put_var_2d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued 2D array.  <a href="namespacenetcdf__inc.html#a1a6fd75cd094cc4b5d07aa68586a5284">More...</a><br /></td></tr>
-<tr class="separator:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a362154743c93a55597e0f06dee16d507"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a362154743c93a55597e0f06dee16d507">nf_put_var_3d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a362154743c93a55597e0f06dee16d507"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued 3D array.  <a href="namespacenetcdf__inc.html#a362154743c93a55597e0f06dee16d507">More...</a><br /></td></tr>
-<tr class="separator:a362154743c93a55597e0f06dee16d507"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad134c34cd4738e31b73af6384a64feed"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad134c34cd4738e31b73af6384a64feed">nf_put_vara_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:ad134c34cd4738e31b73af6384a64feed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#ad134c34cd4738e31b73af6384a64feed">More...</a><br /></td></tr>
-<tr class="separator:ad134c34cd4738e31b73af6384a64feed"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a6dd951ec6b0e8fbe343d1b5fa67a028d">nf_put_vara_2d_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a6dd951ec6b0e8fbe343d1b5fa67a028d">More...</a><br /></td></tr>
-<tr class="separator:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a431fcf28932f65ad9c4c8f2f069fe9a5">nf_put_vara_3d_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a431fcf28932f65ad9c4c8f2f069fe9a5">More...</a><br /></td></tr>
-<tr class="separator:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad00350de3643ca25e0558f1e8fb88bdd"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad00350de3643ca25e0558f1e8fb88bdd">nf_put_vara_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:ad00350de3643ca25e0558f1e8fb88bdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex double value.  <a href="namespacenetcdf__inc.html#ad00350de3643ca25e0558f1e8fb88bdd">More...</a><br /></td></tr>
-<tr class="separator:ad00350de3643ca25e0558f1e8fb88bdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#aad0da7452ac67d014e1e0d3b44b8e99a">nf_put_vara_2d_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex double value.  <a href="namespacenetcdf__inc.html#aad0da7452ac67d014e1e0d3b44b8e99a">More...</a><br /></td></tr>
-<tr class="separator:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64eb0305bc346583635753ff4f70f2b0"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a64eb0305bc346583635753ff4f70f2b0">nf_put_vara_3d_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:a64eb0305bc346583635753ff4f70f2b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a64eb0305bc346583635753ff4f70f2b0">More...</a><br /></td></tr>
-<tr class="separator:a64eb0305bc346583635753ff4f70f2b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac73ad95526fd93d3716ed06a821f925"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#aac73ad95526fd93d3716ed06a821f925">nf_put_var_real</a> (ncid, varid, rvals)</td></tr>
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-<tr class="separator:aac73ad95526fd93d3716ed06a821f925"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0ae9d601f2077ab7ace3466a94b44be2"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a0ae9d601f2077ab7ace3466a94b44be2">nf_put_var_1d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:a0ae9d601f2077ab7ace3466a94b44be2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real valued array.  <a href="namespacenetcdf__inc.html#a0ae9d601f2077ab7ace3466a94b44be2">More...</a><br /></td></tr>
-<tr class="separator:a0ae9d601f2077ab7ace3466a94b44be2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5981df591f7c712a2a9d2ba9ad639be"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad5981df591f7c712a2a9d2ba9ad639be">nf_put_var_2d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:ad5981df591f7c712a2a9d2ba9ad639be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a real valued 2D array.  <a href="namespacenetcdf__inc.html#ad5981df591f7c712a2a9d2ba9ad639be">More...</a><br /></td></tr>
-<tr class="separator:ad5981df591f7c712a2a9d2ba9ad639be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a07eec7e7a01aff5cc3c0a9c7335734cd">nf_put_var_3d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real valued 3D array.  <a href="namespacenetcdf__inc.html#a07eec7e7a01aff5cc3c0a9c7335734cd">More...</a><br /></td></tr>
-<tr class="separator:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84968aae2c550659ed59042d657ea6f4"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a84968aae2c550659ed59042d657ea6f4">nf_put_var_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a84968aae2c550659ed59042d657ea6f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex value.  <a href="namespacenetcdf__inc.html#a84968aae2c550659ed59042d657ea6f4">More...</a><br /></td></tr>
-<tr class="separator:a84968aae2c550659ed59042d657ea6f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a51a993a010f843df1478697b88b541b8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a51a993a010f843df1478697b88b541b8">nf_put_var_1d_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a51a993a010f843df1478697b88b541b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued array.  <a href="namespacenetcdf__inc.html#a51a993a010f843df1478697b88b541b8">More...</a><br /></td></tr>
-<tr class="separator:a51a993a010f843df1478697b88b541b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4795f3324c22c204f904523ca5b9891e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a4795f3324c22c204f904523ca5b9891e">nf_put_var_2d_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a4795f3324c22c204f904523ca5b9891e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued 2D array.  <a href="namespacenetcdf__inc.html#a4795f3324c22c204f904523ca5b9891e">More...</a><br /></td></tr>
-<tr class="separator:a4795f3324c22c204f904523ca5b9891e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a51b78548eb0b4ca64d07eeccb56b4969"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a51b78548eb0b4ca64d07eeccb56b4969">nf_put_var_3d_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a51b78548eb0b4ca64d07eeccb56b4969"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued 3D array.  <a href="namespacenetcdf__inc.html#a51b78548eb0b4ca64d07eeccb56b4969">More...</a><br /></td></tr>
-<tr class="separator:a51b78548eb0b4ca64d07eeccb56b4969"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a88ddce27aaaaa8ea3431fa5202db3146"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a88ddce27aaaaa8ea3431fa5202db3146">nf_put_vara_real</a> (ncid, varid, start, count, rvals)</td></tr>
-<tr class="memdesc:a88ddce27aaaaa8ea3431fa5202db3146"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="namespacenetcdf__inc.html#a88ddce27aaaaa8ea3431fa5202db3146">More...</a><br /></td></tr>
-<tr class="separator:a88ddce27aaaaa8ea3431fa5202db3146"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6441b456082afd0319997220f57d5e70"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a6441b456082afd0319997220f57d5e70">nf_put_vara_2d_real</a> (ncid, varid, start, count, rvals)</td></tr>
-<tr class="memdesc:a6441b456082afd0319997220f57d5e70"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="namespacenetcdf__inc.html#a6441b456082afd0319997220f57d5e70">More...</a><br /></td></tr>
-<tr class="separator:a6441b456082afd0319997220f57d5e70"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7571d53f84a427711258253796b36dc5"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a7571d53f84a427711258253796b36dc5">nf_put_vara_3d_real</a> (ncid, varid, start, count, rvals)</td></tr>
-<tr class="memdesc:a7571d53f84a427711258253796b36dc5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="namespacenetcdf__inc.html#a7571d53f84a427711258253796b36dc5">More...</a><br /></td></tr>
-<tr class="separator:a7571d53f84a427711258253796b36dc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb9fc1897ec22842205c250d471dd6e3"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#aeb9fc1897ec22842205c250d471dd6e3">nf_put_vara_cpx_real</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:aeb9fc1897ec22842205c250d471dd6e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex real value.  <a href="namespacenetcdf__inc.html#aeb9fc1897ec22842205c250d471dd6e3">More...</a><br /></td></tr>
-<tr class="separator:aeb9fc1897ec22842205c250d471dd6e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a505116f5373b9d5ffc2490e285d326e6"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a505116f5373b9d5ffc2490e285d326e6">nf_put_vara_2d_cpx_real</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:a505116f5373b9d5ffc2490e285d326e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex real value.  <a href="namespacenetcdf__inc.html#a505116f5373b9d5ffc2490e285d326e6">More...</a><br /></td></tr>
-<tr class="separator:a505116f5373b9d5ffc2490e285d326e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a769544e38d816efdd9dce3ab482454da"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a769544e38d816efdd9dce3ab482454da">nf_put_vara_3d_cpx_real</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:a769544e38d816efdd9dce3ab482454da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex real value.  <a href="namespacenetcdf__inc.html#a769544e38d816efdd9dce3ab482454da">More...</a><br /></td></tr>
-<tr class="separator:a769544e38d816efdd9dce3ab482454da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abf993c33ca093ebb9588e73122e46a55"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#abf993c33ca093ebb9588e73122e46a55">nf_put_var_text</a> (ncid, varid, text)</td></tr>
-<tr class="memdesc:abf993c33ca093ebb9588e73122e46a55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a text value.  <a href="namespacenetcdf__inc.html#abf993c33ca093ebb9588e73122e46a55">More...</a><br /></td></tr>
-<tr class="separator:abf993c33ca093ebb9588e73122e46a55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64b9db4d4daee4c6d4d53990300579a4"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a64b9db4d4daee4c6d4d53990300579a4">nf_put_vara_text</a> (ncid, varid, start, count, text)</td></tr>
-<tr class="memdesc:a64b9db4d4daee4c6d4d53990300579a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a text valued array.  <a href="namespacenetcdf__inc.html#a64b9db4d4daee4c6d4d53990300579a4">More...</a><br /></td></tr>
-<tr class="separator:a64b9db4d4daee4c6d4d53990300579a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ad187f8d333f742d72bd3a428a7c4bba3"><td class="memItemLeft" align="right" valign="top"><a id="ad187f8d333f742d72bd3a428a7c4bba3"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad187f8d333f742d72bd3a428a7c4bba3">nf_real</a> = nf90_real</td></tr>
-<tr class="memdesc:ad187f8d333f742d72bd3a428a7c4bba3"><td class="mdescLeft">&#160;</td><td class="mdescRight">32bit Real type. <br /></td></tr>
-<tr class="separator:ad187f8d333f742d72bd3a428a7c4bba3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac80f04855a10aecefd2acdc629a242de"><td class="memItemLeft" align="right" valign="top"><a id="ac80f04855a10aecefd2acdc629a242de"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ac80f04855a10aecefd2acdc629a242de">nf_float</a> = nf90_float</td></tr>
-<tr class="memdesc:ac80f04855a10aecefd2acdc629a242de"><td class="mdescLeft">&#160;</td><td class="mdescRight">32bit Real type. <br /></td></tr>
-<tr class="separator:ac80f04855a10aecefd2acdc629a242de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a952173c55e61f4bd20b1a04537c4620a"><td class="memItemLeft" align="right" valign="top"><a id="a952173c55e61f4bd20b1a04537c4620a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a952173c55e61f4bd20b1a04537c4620a">nf_double</a> = nf90_double</td></tr>
-<tr class="memdesc:a952173c55e61f4bd20b1a04537c4620a"><td class="mdescLeft">&#160;</td><td class="mdescRight">64bit Real type. <br /></td></tr>
-<tr class="separator:a952173c55e61f4bd20b1a04537c4620a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a777000399d1084e2aa26dea39e0b76ef"><td class="memItemLeft" align="right" valign="top"><a id="a777000399d1084e2aa26dea39e0b76ef"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a777000399d1084e2aa26dea39e0b76ef">nf_byte</a> = nf90_byte</td></tr>
-<tr class="memdesc:a777000399d1084e2aa26dea39e0b76ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">8bit Integer type. <br /></td></tr>
-<tr class="separator:a777000399d1084e2aa26dea39e0b76ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad4dbbbc5ceacee0888c7177a2a13238b"><td class="memItemLeft" align="right" valign="top"><a id="ad4dbbbc5ceacee0888c7177a2a13238b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad4dbbbc5ceacee0888c7177a2a13238b">nf_char</a> = nf90_char</td></tr>
-<tr class="memdesc:ad4dbbbc5ceacee0888c7177a2a13238b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Character type. <br /></td></tr>
-<tr class="separator:ad4dbbbc5ceacee0888c7177a2a13238b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84354dd88c0ac01e2ffe1224f98768c4"><td class="memItemLeft" align="right" valign="top"><a id="a84354dd88c0ac01e2ffe1224f98768c4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a84354dd88c0ac01e2ffe1224f98768c4">nf_int</a> = nf90_int</td></tr>
-<tr class="memdesc:a84354dd88c0ac01e2ffe1224f98768c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">32bit Integer type. <br /></td></tr>
-<tr class="separator:a84354dd88c0ac01e2ffe1224f98768c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6ba07da795dd7519beca6efaeeb7ecc1"><td class="memItemLeft" align="right" valign="top"><a id="a6ba07da795dd7519beca6efaeeb7ecc1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a6ba07da795dd7519beca6efaeeb7ecc1">nf_max_name</a> = nf90_max_name</td></tr>
-<tr class="memdesc:a6ba07da795dd7519beca6efaeeb7ecc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum length of strings. <br /></td></tr>
-<tr class="separator:a6ba07da795dd7519beca6efaeeb7ecc1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abcd71cf55c8d72a7aea7cfa15efc6f1d"><td class="memItemLeft" align="right" valign="top"><a id="abcd71cf55c8d72a7aea7cfa15efc6f1d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#abcd71cf55c8d72a7aea7cfa15efc6f1d">nf_global</a> = nf90_global</td></tr>
-<tr class="memdesc:abcd71cf55c8d72a7aea7cfa15efc6f1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Netcdf global . <br /></td></tr>
-<tr class="separator:abcd71cf55c8d72a7aea7cfa15efc6f1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae0111c4ab50cd42df6b1d1f439bdbe9b"><td class="memItemLeft" align="right" valign="top"><a id="ae0111c4ab50cd42df6b1d1f439bdbe9b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ae0111c4ab50cd42df6b1d1f439bdbe9b">nf_noerr</a> = nf90_noerr</td></tr>
-<tr class="memdesc:ae0111c4ab50cd42df6b1d1f439bdbe9b"><td class="mdescLeft">&#160;</td><td class="mdescRight">No error responce. <br /></td></tr>
-<tr class="separator:ae0111c4ab50cd42df6b1d1f439bdbe9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8bb5a0a44f0fe79a881897621c6a5272"><td class="memItemLeft" align="right" valign="top"><a id="a8bb5a0a44f0fe79a881897621c6a5272"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a8bb5a0a44f0fe79a881897621c6a5272">nf_write</a> = nf90_write</td></tr>
-<tr class="memdesc:a8bb5a0a44f0fe79a881897621c6a5272"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write flag. <br /></td></tr>
-<tr class="separator:a8bb5a0a44f0fe79a881897621c6a5272"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adbf052d1c972a509d811bed2fcafbf02"><td class="memItemLeft" align="right" valign="top"><a id="adbf052d1c972a509d811bed2fcafbf02"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#adbf052d1c972a509d811bed2fcafbf02">nf_nowrite</a> = nf90_nowrite</td></tr>
-<tr class="memdesc:adbf052d1c972a509d811bed2fcafbf02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Readonly flag. <br /></td></tr>
-<tr class="separator:adbf052d1c972a509d811bed2fcafbf02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0118525c1258e203c3df6ebf2d9a8eec"><td class="memItemLeft" align="right" valign="top"><a id="a0118525c1258e203c3df6ebf2d9a8eec"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a0118525c1258e203c3df6ebf2d9a8eec">nf_clobber</a> = nf90_clobber</td></tr>
-<tr class="memdesc:a0118525c1258e203c3df6ebf2d9a8eec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clobber flag. <br /></td></tr>
-<tr class="separator:a0118525c1258e203c3df6ebf2d9a8eec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a517c2bfd3d513d1b8089a068946312b4"><td class="memItemLeft" align="right" valign="top"><a id="a517c2bfd3d513d1b8089a068946312b4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a517c2bfd3d513d1b8089a068946312b4">nf_64bit_offset</a> = nf90_64bit_offset</td></tr>
-<tr class="memdesc:a517c2bfd3d513d1b8089a068946312b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">64bit offset flag. <br /></td></tr>
-<tr class="separator:a517c2bfd3d513d1b8089a068946312b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Work around to fix some netcdf import problems with the Ezcdf. This module emulates the F77 interface using the F90 interface. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a1cb8ad95b8a2a70a9ac67c5b28b502d7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1cb8ad95b8a2a70a9ac67c5b28b502d7">&#9670;&nbsp;</a></span>nf_def_var()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_def_var </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>xtype</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ndims</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>dimids</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>varid</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Define a variable. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xtype</td><td>Variable type. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ndims</td><td>Number of dimensions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dimids</td><td>Dimension ids. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aff3894cdedd18eb594a4be84fd7d9771"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aff3894cdedd18eb594a4be84fd7d9771">&#9670;&nbsp;</a></span>nf_get_att_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_att_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an double attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the attribute. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double values of the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2c56762c04e32923a0b161a90fc4f70d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2c56762c04e32923a0b161a90fc4f70d">&#9670;&nbsp;</a></span>nf_get_att_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_att_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an integer attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the attribute. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ivals</td><td>Integer values of the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#ac114e61ac2acf859f8955da39b81235f">&#9670;&nbsp;</a></span>nf_get_att_real()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_att_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an real attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the attribute. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real values of the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a76c40a6419496a8b43f997d8bb864052"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a76c40a6419496a8b43f997d8bb864052">&#9670;&nbsp;</a></span>nf_get_att_text()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_att_text </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(out)&#160;</td>
-          <td class="paramname"><em>text</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an string attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the attribute. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">text</td><td>String values of the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a58f124f308896c9cd7c4eb9cbad2908b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a58f124f308896c9cd7c4eb9cbad2908b">&#9670;&nbsp;</a></span>nf_get_var_1d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_1d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 64bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1ca6a5e3768d1d4ab24389a41b50d73e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1ca6a5e3768d1d4ab24389a41b50d73e">&#9670;&nbsp;</a></span>nf_get_var_1d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_1d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 32bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5b372dc25a8cc2d3abde772b6571729a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5b372dc25a8cc2d3abde772b6571729a">&#9670;&nbsp;</a></span>nf_get_var_1d_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_1d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a double valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3d85f5401b73580fbd6d664e21303ffa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d85f5401b73580fbd6d664e21303ffa">&#9670;&nbsp;</a></span>nf_get_var_1d_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_1d_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an integer valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ivals</td><td>Integer array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac91d17011906d038e6ff70d76aaa2d25"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac91d17011906d038e6ff70d76aaa2d25">&#9670;&nbsp;</a></span>nf_get_var_1d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_1d_real </td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a real valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae5ed8c24c9b6fdb35d7f20c360c47e3a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae5ed8c24c9b6fdb35d7f20c360c47e3a">&#9670;&nbsp;</a></span>nf_get_var_2d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_2d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 64bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5b82be61a5d3d1d38c68a639f0ed2c22"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5b82be61a5d3d1d38c68a639f0ed2c22">&#9670;&nbsp;</a></span>nf_get_var_2d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_2d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 32bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9b1aeff6c90decbbf4224cf18281526a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9b1aeff6c90decbbf4224cf18281526a">&#9670;&nbsp;</a></span>nf_get_var_2d_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_2d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a double valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7daf4d77220998a09b8580f7c7401f6b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7daf4d77220998a09b8580f7c7401f6b">&#9670;&nbsp;</a></span>nf_get_var_2d_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_2d_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an integer valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ivals</td><td>Integer array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a89b1a8554855aa3d6f3c63b2eb69bfab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a89b1a8554855aa3d6f3c63b2eb69bfab">&#9670;&nbsp;</a></span>nf_get_var_2d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_2d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a real valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real 2D array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5559cc5a75b0a4d1f6bb33223804a90c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5559cc5a75b0a4d1f6bb33223804a90c">&#9670;&nbsp;</a></span>nf_get_var_3d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_3d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 64bit complex valued 3D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a47c9bf8b575c1c4299bbba553625b4a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a47c9bf8b575c1c4299bbba553625b4a6">&#9670;&nbsp;</a></span>nf_get_var_3d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_3d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 32bit complex valued 3D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6595882356fc42b832f364109b82a820"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6595882356fc42b832f364109b82a820">&#9670;&nbsp;</a></span>nf_get_var_3d_double()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_3d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a double valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8c051dbf952e84d99961749dbc4fdaef"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8c051dbf952e84d99961749dbc4fdaef">&#9670;&nbsp;</a></span>nf_get_var_3d_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_3d_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an integer valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ivals</td><td>Integer array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab7bb0df455dfd2ff234ee6581a2d8b06"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab7bb0df455dfd2ff234ee6581a2d8b06">&#9670;&nbsp;</a></span>nf_get_var_3d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_3d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a real valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real 3D array to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="abb93648eb922858d96a0f5d14aa739a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abb93648eb922858d96a0f5d14aa739a6">&#9670;&nbsp;</a></span>nf_get_var_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 64bit complex value. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="abaaa08a79d7e9236dd9050e81966c6cd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abaaa08a79d7e9236dd9050e81966c6cd">&#9670;&nbsp;</a></span>nf_get_var_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), intent(out)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a 32bit complex value. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0c7db96d1c3b99e4569a7005d265a4b9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0c7db96d1c3b99e4569a7005d265a4b9">&#9670;&nbsp;</a></span>nf_get_var_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__get__var__double.html">netcdf_inc::nf_get_var_double</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), intent(out)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dvals</td><td>Double to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af621a406987df5f3e5ea6025235793d7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af621a406987df5f3e5ea6025235793d7">&#9670;&nbsp;</a></span>nf_get_var_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__get__var__int.html">netcdf_inc::nf_get_var_int</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an integer value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ivals</td><td>Integer to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af87e0311aa7038fbeda0789692ecf97c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af87e0311aa7038fbeda0789692ecf97c">&#9670;&nbsp;</a></span>nf_get_var_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__get__var__real.html">netcdf_inc::nf_get_var_real</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), intent(out)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1e1f025dccc58c997110da587d4efa08"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e1f025dccc58c997110da587d4efa08">&#9670;&nbsp;</a></span>nf_get_var_text()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_var_text </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(out)&#160;</td>
-          <td class="paramname"><em>text</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a text value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">text</td><td>String to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a85cb7a6aed14173322953da8c9a6fe79"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85cb7a6aed14173322953da8c9a6fe79">&#9670;&nbsp;</a></span>nf_get_vara_text()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_get_vara_text </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(out)&#160;</td>
-          <td class="paramname"><em>text</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a text valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting index of the string array. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">text</td><td>String to store the value. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a040fe84758460330e1ce245117904b8c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a040fe84758460330e1ce245117904b8c">&#9670;&nbsp;</a></span>nf_inq_dim()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_inq_dim </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>dimid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(out), optional&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out), optional&#160;</td>
-          <td class="paramname"><em>length</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Inquire a dimension name or length. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dimid</td><td>Dimension id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">name</td><td>Name of the dimension. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">length</td><td>Length of the dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3359b8d6f8f6e7e9b30130d6e05a4bf3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3359b8d6f8f6e7e9b30130d6e05a4bf3">&#9670;&nbsp;</a></span>nf_inq_dimlen()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_inq_dimlen </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>dimid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out)&#160;</td>
-          <td class="paramname"><em>length</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Inquire a dimension length. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dimid</td><td>Dimension id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">length</td><td>Length of the dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa11f5217afcfa60f5c401205b311c2cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa11f5217afcfa60f5c401205b311c2cb">&#9670;&nbsp;</a></span>nf_inq_var()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_inq_var </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(out), optional&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out), optional&#160;</td>
-          <td class="paramname"><em>xtype</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out), optional&#160;</td>
-          <td class="paramname"><em>ndims</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(out), optional&#160;</td>
-          <td class="paramname"><em>dimids</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(out), optional&#160;</td>
-          <td class="paramname"><em>natts</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Inquire a variable. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">name</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xtype</td><td>Variable type. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">ndims</td><td>Number of dimensions. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">dimids</td><td>Dimension ids. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">natts</td><td>Number of attributes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acced04d6c828f5341f13d792092e71f8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acced04d6c828f5341f13d792092e71f8">&#9670;&nbsp;</a></span>nf_put_att_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_att_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>xtype</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Put an double attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the atribute. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xtype</td><td>Type of the value. This is not used. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the real array. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Real values to asign to the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae65afa5be83496eba94fe9784f4af0bb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae65afa5be83496eba94fe9784f4af0bb">&#9670;&nbsp;</a></span>nf_put_att_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_att_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>xtype</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Put an integer attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the atribute. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xtype</td><td>Type of the value. This is not used. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the integer array. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Integer values to asign to the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1e28c0d9797d80eecc8555176b9be49d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e28c0d9797d80eecc8555176b9be49d">&#9670;&nbsp;</a></span>nf_put_att_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_att_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>xtype</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Put an real attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the atribute. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">xtype</td><td>Type of the value. This is not used. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the real array. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real values to asign to the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad55b9f56ec5e2959bbe41a4405c63173"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad55b9f56ec5e2959bbe41a4405c63173">&#9670;&nbsp;</a></span>nf_put_att_text()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_att_text </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>length</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>text</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Put an text attribute. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the atribute. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">length</td><td>Length of the real array. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">text</td><td>String value to asign to the attribute. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad56f9c003fcc788c8f22d1ad3da220d0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad56f9c003fcc788c8f22d1ad3da220d0">&#9670;&nbsp;</a></span>nf_put_var_1d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_1d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a 64bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
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-  </dd>
-</dl>
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-          <td class="memname">integer function netcdf_inc::nf_put_var_1d_cpx_real </td>
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-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
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-        <tr>
-          <td></td>
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-          <td></td><td></td>
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-
-<p>Write a 32bit complex valued array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a16885d0ab73823642564a1cef98931d2">&#9670;&nbsp;</a></span>nf_put_var_1d_double()</h2>
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-          <td class="memname">integer function netcdf_inc::nf_put_var_1d_double </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
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-          <td></td><td></td>
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-      </table>
-</div><div class="memdoc">
-
-<p>Write a double valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
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-          <td class="memname">integer function netcdf_inc::nf_put_var_1d_int </td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-
-<p>Write an integer valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Integer value to write. </td></tr>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
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-        <tr>
-          <td></td>
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-          <td></td><td></td>
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-</div><div class="memdoc">
-
-<p>Write a real valued array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a1a6fd75cd094cc4b5d07aa68586a5284">&#9670;&nbsp;</a></span>nf_put_var_2d_cpx_double()</h2>
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-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
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-        <tr>
-          <td></td>
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-
-<p>Write a 64bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a4795f3324c22c204f904523ca5b9891e">&#9670;&nbsp;</a></span>nf_put_var_2d_cpx_real()</h2>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:), intent(in)&#160;</td>
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-
-<p>Write a 32bit complex valued 2D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
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-  </dd>
-</dl>
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-<h2 class="memtitle"><span class="permalink"><a href="#a0f811b4a3aae119897db4219d5652e2e">&#9670;&nbsp;</a></span>nf_put_var_2d_double()</h2>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (real64), dimension(:,:), intent(in)&#160;</td>
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-
-<p>Read a double valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
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-  </dd>
-</dl>
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-<a id="acb47a6297a198529519b9605125bb3da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb47a6297a198529519b9605125bb3da">&#9670;&nbsp;</a></span>nf_put_var_2d_int()</h2>
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-</div><div class="memdoc">
-
-<p>Write an integer valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Integer value to write. </td></tr>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
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-</div><div class="memdoc">
-
-<p>Read a real valued 2D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
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-          <td class="paramname"><em>varid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:,:), intent(in)&#160;</td>
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-        <tr>
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-
-<p>Write a 64bit complex valued 3D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a double array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
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-</dl>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:,:), intent(in)&#160;</td>
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-
-<p>Write a 32bit complex valued 3D array. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
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-  </dd>
-</dl>
-
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (real64), dimension(:,:,:), intent(in)&#160;</td>
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-</div><div class="memdoc">
-
-<p>Write a double valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a90f1b521a37c57c43c287ccf9ce6176d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a90f1b521a37c57c43c287ccf9ce6176d">&#9670;&nbsp;</a></span>nf_put_var_3d_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_3d_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write an integer valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Integer value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a07eec7e7a01aff5cc3c0a9c7335734cd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a07eec7e7a01aff5cc3c0a9c7335734cd">&#9670;&nbsp;</a></span>nf_put_var_3d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_3d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a real valued 3D array. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae2984dcf09f9c056b21e47e82e49b374"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae2984dcf09f9c056b21e47e82e49b374">&#9670;&nbsp;</a></span>nf_put_var_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a 64bit complex value. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a84968aae2c550659ed59042d657ea6f4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a84968aae2c550659ed59042d657ea6f4">&#9670;&nbsp;</a></span>nf_put_var_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a 32bit complex value. </p>
-<p>Netcdf does not support complex types directly. Instead these values are interweaved into a real array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cvals</td><td>Complex value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6f1396faaf917b0712cdf199b2c1d2a8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6f1396faaf917b0712cdf199b2c1d2a8">&#9670;&nbsp;</a></span>nf_put_var_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__put__var__double.html">netcdf_inc::nf_put_var_double</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a921168a2c55d6ad28d1121bd6d1d0f7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a921168a2c55d6ad28d1121bd6d1d0f7b">&#9670;&nbsp;</a></span>nf_put_var_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__put__var__int.html">netcdf_inc::nf_put_var_int</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write an integer value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Integer value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aac73ad95526fd93d3716ed06a821f925"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac73ad95526fd93d3716ed06a821f925">&#9670;&nbsp;</a></span>nf_put_var_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__put__var__real.html">netcdf_inc::nf_put_var_real</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="abf993c33ca093ebb9588e73122e46a55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abf993c33ca093ebb9588e73122e46a55">&#9670;&nbsp;</a></span>nf_put_var_text()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_var_text </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>text</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a text value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">text</td><td>String value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aad0da7452ac67d014e1e0d3b44b8e99a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aad0da7452ac67d014e1e0d3b44b8e99a">&#9670;&nbsp;</a></span>nf_put_vara_2d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_2d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a complex double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a505116f5373b9d5ffc2490e285d326e6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a505116f5373b9d5ffc2490e285d326e6">&#9670;&nbsp;</a></span>nf_put_vara_2d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_2d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6dd951ec6b0e8fbe343d1b5fa67a028d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6dd951ec6b0e8fbe343d1b5fa67a028d">&#9670;&nbsp;</a></span>nf_put_vara_2d_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_2d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6441b456082afd0319997220f57d5e70"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6441b456082afd0319997220f57d5e70">&#9670;&nbsp;</a></span>nf_put_vara_2d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_2d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a64eb0305bc346583635753ff4f70f2b0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a64eb0305bc346583635753ff4f70f2b0">&#9670;&nbsp;</a></span>nf_put_vara_3d_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_3d_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a769544e38d816efdd9dce3ab482454da"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a769544e38d816efdd9dce3ab482454da">&#9670;&nbsp;</a></span>nf_put_vara_3d_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_3d_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a431fcf28932f65ad9c4c8f2f069fe9a5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a431fcf28932f65ad9c4c8f2f069fe9a5">&#9670;&nbsp;</a></span>nf_put_vara_3d_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_3d_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a77c07898953169e237083413ae875ac0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a77c07898953169e237083413ae875ac0">&#9670;&nbsp;</a></span>nf_put_vara_3d_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_3d_int </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>ivals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a integer value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ivals</td><td>Double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7571d53f84a427711258253796b36dc5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7571d53f84a427711258253796b36dc5">&#9670;&nbsp;</a></span>nf_put_vara_3d_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_3d_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real32), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad00350de3643ca25e0558f1e8fb88bdd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad00350de3643ca25e0558f1e8fb88bdd">&#9670;&nbsp;</a></span>nf_put_vara_cpx_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_cpx_double </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real64), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a complex double value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Complex double value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aeb9fc1897ec22842205c250d471dd6e3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeb9fc1897ec22842205c250d471dd6e3">&#9670;&nbsp;</a></span>nf_put_vara_cpx_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function netcdf_inc::nf_put_vara_cpx_real </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">complex (real32), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>cvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write a complex real value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">varid</td><td>Variable id. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start</td><td>Starting indices. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">count</td><td>Number of elements to count. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cvals</td><td>Real value to write. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad134c34cd4738e31b73af6384a64feed"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad134c34cd4738e31b73af6384a64feed">&#9670;&nbsp;</a></span>nf_put_vara_double()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function <a class="el" href="interfacenetcdf__inc_1_1nf__put__vara__double.html">netcdf_inc::nf_put_vara_double</a> </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>varid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>count</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (real64), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>dvals</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-<p>Write a integer value. </p>
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-<p>Write a text valued array. </p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">ncid</td><td>Netcdf file id. </td></tr>
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">pchelms Module Reference</div>  </div>
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-
-<p>This file solves the helmholtz equation to set inital fields that match vmec and vacuum currents from the vector potential. Initial vector potential on the edge is supplied by the BMW code.  
-<a href="namespacepchelms.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memdesc:aec5cddc82bbffdf9a2c6e96d607ba90e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute real-space components of contravariant jac*B^i on half radial grid from curl(A).  <a href="namespacepchelms.html#aec5cddc82bbffdf9a2c6e96d607ba90e">More...</a><br /></td></tr>
-<tr class="separator:aec5cddc82bbffdf9a2c6e96d607ba90e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5c588539b11ef597d1f30c6397af78a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a5c588539b11ef597d1f30c6397af78a6">curlb_pchelms</a> (ksupsmnf, ksupumnf, ksupvmnf, asubsmnf,</td></tr>
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-<tr class="separator:a5c588539b11ef597d1f30c6397af78a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a11fde1f18d2db817c31be925702ca27a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab92c8f2b18acd0ab05820b19beb32b73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute linear forces. <br /></td></tr>
-<tr class="separator:ab92c8f2b18acd0ab05820b19beb32b73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a59257cee16eee714e41df5a755e5db8d"><td class="memItemLeft" align="right" valign="top"><a id="a59257cee16eee714e41df5a755e5db8d"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a59257cee16eee714e41df5a755e5db8d">backslv</a></td></tr>
-<tr class="memdesc:a59257cee16eee714e41df5a755e5db8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update solution. <br /></td></tr>
-<tr class="separator:a59257cee16eee714e41df5a755e5db8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b8943c1709ac343912f095a522c2f40"><td class="memItemLeft" align="right" valign="top"><a id="a6b8943c1709ac343912f095a522c2f40"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a6b8943c1709ac343912f095a522c2f40">init_pchelms</a></td></tr>
-<tr class="memdesc:a6b8943c1709ac343912f095a522c2f40"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize helmholtz solver. <br /></td></tr>
-<tr class="separator:a6b8943c1709ac343912f095a522c2f40"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afcfa1bab3a50f95f1f72a6f8b8cc988d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#afcfa1bab3a50f95f1f72a6f8b8cc988d">compute_forces</a> (lNLinear)</td></tr>
-<tr class="memdesc:afcfa1bab3a50f95f1f72a6f8b8cc988d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute Fourier components of Curl(Curl(A)) - mu0J operator on full radial grid.  <a href="namespacepchelms.html#afcfa1bab3a50f95f1f72a6f8b8cc988d">More...</a><br /></td></tr>
-<tr class="separator:afcfa1bab3a50f95f1f72a6f8b8cc988d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6cae02545c78f51ab7c3841373b05c55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a6cae02545c78f51ab7c3841373b05c55">boundaryconditions</a> (Fsupsmn, Fsupumn, Fsupvmn, iparity)</td></tr>
-<tr class="memdesc:a6cae02545c78f51ab7c3841373b05c55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Apply boundary conditions.  <a href="namespacepchelms.html#a6cae02545c78f51ab7c3841373b05c55">More...</a><br /></td></tr>
-<tr class="separator:a6cae02545c78f51ab7c3841373b05c55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a835b9933774c798db9d3af83abd8f811"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a835b9933774c798db9d3af83abd8f811">gmres_pchelms</a></td></tr>
-<tr class="memdesc:a835b9933774c798db9d3af83abd8f811"><td class="mdescLeft">&#160;</td><td class="mdescRight">Setup and run GMRES solver for the helmholtz problem.  <a href="namespacepchelms.html#a835b9933774c798db9d3af83abd8f811">More...</a><br /></td></tr>
-<tr class="separator:a835b9933774c798db9d3af83abd8f811"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab999d3174651fcdde4208231de35279c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#ab999d3174651fcdde4208231de35279c">matvec_pchelms</a> (p, Ap, ndim)</td></tr>
-<tr class="memdesc:ab999d3174651fcdde4208231de35279c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Serial callback function for MatVec GMRES routine.  <a href="namespacepchelms.html#ab999d3174651fcdde4208231de35279c">More...</a><br /></td></tr>
-<tr class="separator:ab999d3174651fcdde4208231de35279c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc36a9db8401258f3d4e3b6415e6dfda"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#afc36a9db8401258f3d4e3b6415e6dfda">matvec_par_pchelms</a> (ploc, Ap, nloc)</td></tr>
-<tr class="memdesc:afc36a9db8401258f3d4e3b6415e6dfda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parallel callback function for MatVec GMRES routine.  <a href="namespacepchelms.html#afc36a9db8401258f3d4e3b6415e6dfda">More...</a><br /></td></tr>
-<tr class="separator:afc36a9db8401258f3d4e3b6415e6dfda"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad89a7b4e5adb8613efe6fa04700598a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#aad89a7b4e5adb8613efe6fa04700598a">getnlforce_pchelms</a> (xcstate, fsq_nl, bnorm)</td></tr>
-<tr class="memdesc:aad89a7b4e5adb8613efe6fa04700598a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non linear force callback.  <a href="namespacepchelms.html#aad89a7b4e5adb8613efe6fa04700598a">More...</a><br /></td></tr>
-<tr class="separator:aad89a7b4e5adb8613efe6fa04700598a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file solves the helmholtz equation to set inital fields that match vmec and vacuum currents from the vector potential. Initial vector potential on the edge is supplied by the BMW code. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a6cae02545c78f51ab7c3841373b05c55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6cae02545c78f51ab7c3841373b05c55">&#9670;&nbsp;</a></span>boundaryconditions()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::boundaryconditions </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Fsupsmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Fsupumn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Fsupvmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>iparity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Apply boundary conditions. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">Fsupsmn</td><td>Contravariant current in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">Fsupumn</td><td>Contravariant current in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">Fsupvmn</td><td>Contravariant current in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Fourier parity of the residuals. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1bac7a0e1bf89a7618e5a0092eca9856"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1bac7a0e1bf89a7618e5a0092eca9856">&#9670;&nbsp;</a></span>compare_current()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::compare_current </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>Fsupsmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>Fsupumn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>Fsupvmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>jcurrumn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jc</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compare Curl(Curl(A)) with the expected VMEC and vacuum currents. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">Fsupsmn</td><td>Contravariant current in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Fsupumn</td><td>Contravariant current in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Fsupvmn</td><td>Contravariant current in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jcurrumn</td><td>Contravariant VMEC current in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jcurrvmn</td><td>Contravariant VMEC current in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Parity flag to indicate stellaratory symmetry. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="afcfa1bab3a50f95f1f72a6f8b8cc988d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afcfa1bab3a50f95f1f72a6f8b8cc988d">&#9670;&nbsp;</a></span>compute_forces()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::compute_forces </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>lNLinear</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute Fourier components of Curl(Curl(A)) - mu0J operator on full radial grid. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">lNLinear</td><td>Use Non linear equations. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aec5cddc82bbffdf9a2c6e96d607ba90e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aec5cddc82bbffdf9a2c6e96d607ba90e">&#9670;&nbsp;</a></span>curla_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::curla_pchelms </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Asubsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Asubumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>Asubvmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute real-space components of contravariant jac*B^i on half radial grid from curl(A). </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnf</td><td>Covariant vector potential in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubumnf</td><td>Covariant vector potential in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubvmnf</td><td>Covariant vector potential in the v direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsupsmnh</td><td>Contravariant B field and jacobian in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsupumnh</td><td>Contravariant B field and jacobian in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsupvmnh</td><td>Contravariant B field and jacobian in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag to indicate stellaratory symmetry. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5c588539b11ef597d1f30c6397af78a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5c588539b11ef597d1f30c6397af78a6">&#9670;&nbsp;</a></span>curlb_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::curlb_pchelms </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>ksupsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>ksupumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>ksupvmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>asubsmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute real-space components of contravariant jac*J^i on full radial grid from curl(B). </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupsmnf</td><td>Contravariant current and jacobian in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupumnf</td><td>Contravariant current and jacobian in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupvmnf</td><td>Contravariant current and jacobian in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">asubsmnf</td><td>Covariant vector potential in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupsmnh</td><td>Contravariant current and jacobian in the v direction on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Parity flag to indicate stellaratory symmetry. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3e988318d4f7538797336068e91fe5fa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3e988318d4f7538797336068e91fe5fa">&#9670;&nbsp;</a></span>cyl2vmec_a()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::cyl2vmec_a </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>A_r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>A_p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>A_z</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cA_s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cA_u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>cA_v</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert cylindical vector potential to contravariant components. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">A_r</td><td>Cylindical r component of the vector potential at the last surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">A_p</td><td>Cylindical p component of the vector potential at the last surface. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">A_z</td><td>Cylindical z component of the vector potential at the last surface. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cA_s</td><td>Contravariant vector potential in the s direction on the last surface grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cA_u</td><td>Contravariant vector potential in the u direction on the last surface grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">cA_v</td><td>Contravariant vector potential in the v direction on the last surface grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a11fde1f18d2db817c31be925702ca27a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a11fde1f18d2db817c31be925702ca27a">&#9670;&nbsp;</a></span>dump_b()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::dump_b </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>js</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iunit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out magnetic field to file. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">js</td><td>Radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iunit</td><td>File unit to write to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a055dc5013104e1119dcfd6c8b99b65c6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a055dc5013104e1119dcfd6c8b99b65c6">&#9670;&nbsp;</a></span>get_e_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::get_e_s </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>rij_h</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>zij_h</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>rs</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>zs</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the e_s basis vector. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">rij_h</td><td>Real space R on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zij_h</td><td>Real space Z on the half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">rs</td><td>R' on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">zs</td><td>Z' on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aad89a7b4e5adb8613efe6fa04700598a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aad89a7b4e5adb8613efe6fa04700598a">&#9670;&nbsp;</a></span>getnlforce_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::getnlforce_pchelms </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(neqs), intent(in)&#160;</td>
-          <td class="paramname"><em>xcstate</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(out)&#160;</td>
-          <td class="paramname"><em>fsq_nl</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), intent(in)&#160;</td>
-          <td class="paramname"><em>bnorm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Non linear force callback. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcstate</td><td>Displacement parameters. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">fsq_nl</td><td>|F^2| non-linear residual. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bnorm</td><td>Internal GMRES normalization </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a835b9933774c798db9d3af83abd8f811"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a835b9933774c798db9d3af83abd8f811">&#9670;&nbsp;</a></span>gmres_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::gmres_pchelms</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Setup and run GMRES solver for the helmholtz problem. </p>
-<p>GMRES solves r == b + Ax = 0 </p>
-
-</div>
-</div>
-<a id="a165514a8e63c16e7afd2f4404e4c03ad"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a165514a8e63c16e7afd2f4404e4c03ad">&#9670;&nbsp;</a></span>init_a()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::init_a </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>cA_s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>cA_u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>cA_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>A_s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>A_u</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>A_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize vector potential. </p>
-<p>This subroutine is only called once so no need to parallelize. Linearly extrapolat to the center or match surface.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">cA_s</td><td>Contravariant vector potential in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">cA_u</td><td>Contravariant vector potential in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">cA_v</td><td>Contravariant vector potential in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">A_s</td><td>Contravariant fourier vector potential in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">A_u</td><td>Contravariant fourier vector potential in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">A_v</td><td>Contravariant fourier vector potential in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag to indicate stellaratory symmetry. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aac5e7cf44bc7d222874c152b0dce61b5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac5e7cf44bc7d222874c152b0dce61b5">&#9670;&nbsp;</a></span>init_f()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::init_f </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>Fsupsmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>Fsupumn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(0:mpol,-ntor:ntor,ns), intent(out)&#160;</td>
-          <td class="paramname"><em>Fsupvmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jcurrumn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jcurrvmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>p</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize expected currents. </p>
-<p>Up to the vmec last closed flux surface, initialize with the VMEC currents. outside, initalize to zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[out]</td><td class="paramname">Fsupsmn</td><td>Contravariant current in the s direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">Fsupumn</td><td>Contravariant current in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">Fsupvmn</td><td>Contravariant current in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jcurrumn</td><td>Contravariant VMEC current in the u direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jcurrvmn</td><td>Contravariant VMEC current in the v direction on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity of the residuals. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="afc36a9db8401258f3d4e3b6415e6dfda"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc36a9db8401258f3d4e3b6415e6dfda">&#9670;&nbsp;</a></span>matvec_par_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::matvec_par_pchelms </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(nloc), intent(in)&#160;</td>
-          <td class="paramname"><em>ploc</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(nloc), intent(out)&#160;</td>
-          <td class="paramname"><em>Ap</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nloc</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parallel callback function for MatVec GMRES routine. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ploc</td><td>Local displacement parameters. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">Ap</td><td>Local Matrix element. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nloc</td><td>Local number of dimensiona. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab999d3174651fcdde4208231de35279c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab999d3174651fcdde4208231de35279c">&#9670;&nbsp;</a></span>matvec_pchelms()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pchelms::matvec_pchelms </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(ndim), intent(in)&#160;</td>
-          <td class="paramname"><em>p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(ndim), intent(out)&#160;</td>
-          <td class="paramname"><em>Ap</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ndim</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Serial callback function for MatVec GMRES routine. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Displacement parameters. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">Ap</td><td>Matrix element. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ndim</td><td>Number of dimensiona. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">perturbation Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Subroutines and functionsto apply the helical perturbation to open up islands.  
-<a href="namespaceperturbation.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1e430650bc380cf4d295b6f3d14ce0cb"><td class="memItemLeft" align="right" valign="top">integer function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceperturbation.html#a1e430650bc380cf4d295b6f3d14ce0cb">init_data</a> (namelist_file)</td></tr>
-<tr class="memdesc:a1e430650bc380cf4d295b6f3d14ce0cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Load the namelist.  <a href="namespaceperturbation.html#a1e430650bc380cf4d295b6f3d14ce0cb">More...</a><br /></td></tr>
-<tr class="separator:a1e430650bc380cf4d295b6f3d14ce0cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a5d7c73d1e1a50472c162ffb7e517440c"><td class="memItemLeft" align="right" valign="top"><a id="a5d7c73d1e1a50472c162ffb7e517440c"></a>
-integer, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceperturbation.html#a5d7c73d1e1a50472c162ffb7e517440c">niter_max</a></td></tr>
-<tr class="memdesc:a5d7c73d1e1a50472c162ffb7e517440c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of iterations. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Subroutines and functionsto apply the helical perturbation to open up islands. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a1e430650bc380cf4d295b6f3d14ce0cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e430650bc380cf4d295b6f3d14ce0cb">&#9670;&nbsp;</a></span>init_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function, public perturbation::init_data </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Load the namelist. </p>
-<p>READS siesta.jcf (JOB CONTROL FILE) for data (generalized to siesta_&lt;name&gt;.jcf, where &lt;name&gt; is the command line argument (ignored if not present!)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>Path to the siesta namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#nested-classes">Data Types</a> &#124;
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-
-<p>Defines the base class of the type <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>. This module contains all the code necessary to define parameterized profiles.  
-<a href="namespacepprofile__t.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a parameterized profile.  <a href="structpprofile__t_1_1pprofile__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpprofile__t_1_1pprofile__pointer.html">pprofile_pointer</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer to a pprofile object. Used for creating arrays of pprofile pointers. This is needed because fortran does not allow arrays of pointers directly.  <a href="structpprofile__t_1_1pprofile__pointer.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a45835368dd7de7eb34d2108fea0002c4"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a45835368dd7de7eb34d2108fea0002c4">pprofile_construct</a> (p_type, b, as, af)</td></tr>
-<tr class="memdesc:a45835368dd7de7eb34d2108fea0002c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>.  <a href="namespacepprofile__t.html#a45835368dd7de7eb34d2108fea0002c4">More...</a><br /></td></tr>
-<tr class="separator:a45835368dd7de7eb34d2108fea0002c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a10f804e2272a8795fe7a843dfd4b0d63"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a10f804e2272a8795fe7a843dfd4b0d63">pprofile_destruct</a> (this)</td></tr>
-<tr class="memdesc:a10f804e2272a8795fe7a843dfd4b0d63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> object.  <a href="namespacepprofile__t.html#a10f804e2272a8795fe7a843dfd4b0d63">More...</a><br /></td></tr>
-<tr class="separator:a10f804e2272a8795fe7a843dfd4b0d63"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeff18f2ba94083ded9d51ea20a7e8ee3"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#aeff18f2ba94083ded9d51ea20a7e8ee3">pprofile_get_value</a> (this, s_arg)</td></tr>
-<tr class="memdesc:aeff18f2ba94083ded9d51ea20a7e8ee3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the value of a profile at a radial position.  <a href="namespacepprofile__t.html#aeff18f2ba94083ded9d51ea20a7e8ee3">More...</a><br /></td></tr>
-<tr class="separator:aeff18f2ba94083ded9d51ea20a7e8ee3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a462ecc1cd34de4137adc99ce5f409df1"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacepprofile__t.html#ac1db9c02d7aa16478e96acc8c6ee028f">p_type_len</a>) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a462ecc1cd34de4137adc99ce5f409df1">pprofile_get_p_type_name</a> (this)</td></tr>
-<tr class="memdesc:a462ecc1cd34de4137adc99ce5f409df1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the name of the profile type.  <a href="namespacepprofile__t.html#a462ecc1cd34de4137adc99ce5f409df1">More...</a><br /></td></tr>
-<tr class="separator:a462ecc1cd34de4137adc99ce5f409df1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a8b9c655983bbaec1274a7a724f638e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a4a8b9c655983bbaec1274a7a724f638e">pprofile_get_gp_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a4a8b9c655983bbaec1274a7a724f638e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the guassian process kernel value for the two as indicies.  <a href="namespacepprofile__t.html#a4a8b9c655983bbaec1274a7a724f638e">More...</a><br /></td></tr>
-<tr class="separator:a4a8b9c655983bbaec1274a7a724f638e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21ef1957521ac33d669105dda3c0c1a0"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a21ef1957521ac33d669105dda3c0c1a0">pprofile_get_gp_pi</a> (this, p, i)</td></tr>
-<tr class="memdesc:a21ef1957521ac33d669105dda3c0c1a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the guassian process kernel value for the point and index.  <a href="namespacepprofile__t.html#a21ef1957521ac33d669105dda3c0c1a0">More...</a><br /></td></tr>
-<tr class="separator:a21ef1957521ac33d669105dda3c0c1a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af30a8e6d63ca54c1274afa9e0f157c08"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#af30a8e6d63ca54c1274afa9e0f157c08">pprofile_get_gp_pp</a> (this, p1, p2)</td></tr>
-<tr class="memdesc:af30a8e6d63ca54c1274afa9e0f157c08"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the guassian process kernel value for two points.  <a href="namespacepprofile__t.html#af30a8e6d63ca54c1274afa9e0f157c08">More...</a><br /></td></tr>
-<tr class="separator:af30a8e6d63ca54c1274afa9e0f157c08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75711e82e59ad6c5fc3d9fbf6330d474"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a75711e82e59ad6c5fc3d9fbf6330d474">pprofile_get_gp_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a75711e82e59ad6c5fc3d9fbf6330d474"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of hyper parameters for guassian process kernel.  <a href="namespacepprofile__t.html#a75711e82e59ad6c5fc3d9fbf6330d474">More...</a><br /></td></tr>
-<tr class="separator:a75711e82e59ad6c5fc3d9fbf6330d474"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4d32fc72b372b92d05c02cf49e498003"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a4d32fc72b372b92d05c02cf49e498003">pprofile_write</a> (this, id, iou)</td></tr>
-<tr class="memdesc:a4d32fc72b372b92d05c02cf49e498003"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the profile to an output file.  <a href="namespacepprofile__t.html#a4d32fc72b372b92d05c02cf49e498003">More...</a><br /></td></tr>
-<tr class="separator:a4d32fc72b372b92d05c02cf49e498003"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af1936f32c455004fea58c096ff34824a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#af1936f32c455004fea58c096ff34824a">pprofile_save_state</a> (this)</td></tr>
-<tr class="memdesc:af1936f32c455004fea58c096ff34824a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the profile.  <a href="namespacepprofile__t.html#af1936f32c455004fea58c096ff34824a">More...</a><br /></td></tr>
-<tr class="separator:af1936f32c455004fea58c096ff34824a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a57fba41e433baa71fc8a1cad5c7bb3cc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a57fba41e433baa71fc8a1cad5c7bb3cc">pprofile_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a57fba41e433baa71fc8a1cad5c7bb3cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the profile.  <a href="namespacepprofile__t.html#a57fba41e433baa71fc8a1cad5c7bb3cc">More...</a><br /></td></tr>
-<tr class="separator:a57fba41e433baa71fc8a1cad5c7bb3cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abc9605e5463c1559316fa5b38d708330"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#abc9605e5463c1559316fa5b38d708330">pprofile_gp_1d_sqexp_k</a> (this, p1, p2)</td></tr>
-<tr class="memdesc:abc9605e5463c1559316fa5b38d708330"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the one dimensional squared exponential kernel.  <a href="namespacepprofile__t.html#abc9605e5463c1559316fa5b38d708330">More...</a><br /></td></tr>
-<tr class="separator:abc9605e5463c1559316fa5b38d708330"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a067ecbe88c417aeec34a6c034695f0ff"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a067ecbe88c417aeec34a6c034695f0ff">pprofile_gp_1d_sqexp_ln_k</a> (this, p1, p2)</td></tr>
-<tr class="memdesc:a067ecbe88c417aeec34a6c034695f0ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the one dimensional squared exponential kernel.  <a href="namespacepprofile__t.html#a067ecbe88c417aeec34a6c034695f0ff">More...</a><br /></td></tr>
-<tr class="separator:a067ecbe88c417aeec34a6c034695f0ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ac1db9c02d7aa16478e96acc8c6ee028f"><td class="memItemLeft" align="right" valign="top"><a id="ac1db9c02d7aa16478e96acc8c6ee028f"></a>
-integer, parameter, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#ac1db9c02d7aa16478e96acc8c6ee028f">p_type_len</a> =20</td></tr>
-<tr class="memdesc:ac1db9c02d7aa16478e96acc8c6ee028f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum size for parameter profile name lengths. <br /></td></tr>
-<tr class="separator:ac1db9c02d7aa16478e96acc8c6ee028f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aef15a80e54ea1ac700a5bf61d19c85ab"><td class="memItemLeft" align="right" valign="top"><a id="aef15a80e54ea1ac700a5bf61d19c85ab"></a>
-integer, parameter, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#aef15a80e54ea1ac700a5bf61d19c85ab">ilb_b</a> = 0</td></tr>
-<tr class="memdesc:aef15a80e54ea1ac700a5bf61d19c85ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lower array bound for function profiles. <br /></td></tr>
-<tr class="separator:aef15a80e54ea1ac700a5bf61d19c85ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32b40cab6f68b215d00017392122ff61"><td class="memItemLeft" align="right" valign="top"><a id="a32b40cab6f68b215d00017392122ff61"></a>
-integer, parameter, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a32b40cab6f68b215d00017392122ff61">iub_b</a> = 21</td></tr>
-<tr class="memdesc:a32b40cab6f68b215d00017392122ff61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Upper array bound for function profiles. <br /></td></tr>
-<tr class="separator:a32b40cab6f68b215d00017392122ff61"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a051c0f0cb6180d07046287ca81845e07"><td class="memItemLeft" align="right" valign="top"><a id="a051c0f0cb6180d07046287ca81845e07"></a>
-integer, parameter, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a051c0f0cb6180d07046287ca81845e07">iub_asf</a> = 101</td></tr>
-<tr class="memdesc:a051c0f0cb6180d07046287ca81845e07"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array size for spline profiles. <br /></td></tr>
-<tr class="separator:a051c0f0cb6180d07046287ca81845e07"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>. This module contains all the code necessary to define parameterized profiles. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a45835368dd7de7eb34d2108fea0002c4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a45835368dd7de7eb34d2108fea0002c4">&#9670;&nbsp;</a></span>pprofile_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>) function, pointer pprofile_t::pprofile_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>p_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>b</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>as</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>af</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_type</td><td>Profile type discription. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of functional profile coefficients </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">as</td><td>Array of segmented radial positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">af</td><td>Array of segmented profile values. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a10f804e2272a8795fe7a843dfd4b0d63"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a10f804e2272a8795fe7a843dfd4b0d63">&#9670;&nbsp;</a></span>pprofile_destruct()</h2>
-
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-        <tr>
-          <td class="memname">subroutine pprofile_t::pprofile_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4a8b9c655983bbaec1274a7a724f638e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a8b9c655983bbaec1274a7a724f638e">&#9670;&nbsp;</a></span>pprofile_get_gp_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function pprofile_t::pprofile_get_gp_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the guassian process kernel value for the two as indicies. </p>
-<p>Indicies are the index of the as array. Only valid for guassian process profiles.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the profile type. </dd></dl>
-
-</div>
-</div>
-<a id="a75711e82e59ad6c5fc3d9fbf6330d474"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a75711e82e59ad6c5fc3d9fbf6330d474">&#9670;&nbsp;</a></span>pprofile_get_gp_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function pprofile_t::pprofile_get_gp_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of hyper parameters for guassian process kernel. </p>
-<p>Hyper parameters must be set to maximise the log of the evidence. If this profile is not a guassian process return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a21ef1957521ac33d669105dda3c0c1a0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a21ef1957521ac33d669105dda3c0c1a0">&#9670;&nbsp;</a></span>pprofile_get_gp_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function pprofile_t::pprofile_get_gp_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the guassian process kernel value for the point and index. </p>
-<p>Index are the index of the as array. Point is a measurement point on the profile. Only valid for guassian process profiles.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Point to evaluate the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for p and i. </dd></dl>
-
-</div>
-</div>
-<a id="af30a8e6d63ca54c1274afa9e0f157c08"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af30a8e6d63ca54c1274afa9e0f157c08">&#9670;&nbsp;</a></span>pprofile_get_gp_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function pprofile_t::pprofile_get_gp_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the guassian process kernel value for two points. </p>
-<p>Points are a measurement point on the profile. Only valid for guassian process profiles.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p1</td><td>First point to evaluate the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p2</td><td>SEOND point to evaluate the kernel at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for p and i. </dd></dl>
-
-</div>
-</div>
-<a id="a462ecc1cd34de4137adc99ce5f409df1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a462ecc1cd34de4137adc99ce5f409df1">&#9670;&nbsp;</a></span>pprofile_get_p_type_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=<a class="el" href="namespacepprofile__t.html#ac1db9c02d7aa16478e96acc8c6ee028f">p_type_len</a>) function pprofile_t::pprofile_get_p_type_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the name of the profile type. </p>
-<p>Convertes a profile type to a string discription.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the profile type. </dd></dl>
-
-</div>
-</div>
-<a id="aeff18f2ba94083ded9d51ea20a7e8ee3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeff18f2ba94083ded9d51ea20a7e8ee3">&#9670;&nbsp;</a></span>pprofile_get_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function pprofile_t::pprofile_get_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s_arg</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the value of a profile at a radial position. </p>
-<p>Evaluates the profile at the specifed radial position. If the radial position is out side the plasma, it returns the baseline value. If there is no profile type specified return the default value.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_arg</td><td>Radial position to evaluate the profile at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the profile. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000006">Todo:</a></b></dt><dd>This function makes vmec specific assumptions of 1 being the maximum radial value. </dd></dl>
-
-</div>
-</div>
-<a id="abc9605e5463c1559316fa5b38d708330"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abc9605e5463c1559316fa5b38d708330">&#9670;&nbsp;</a></span>pprofile_gp_1d_sqexp_k()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function pprofile_t::pprofile_gp_1d_sqexp_k </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the one dimensional squared exponential kernel. </p>
-<p>The squared exponential kernel is defined as</p>
-<p>b(0)^2*exp(-(x1 - x2)^2/2*b(1)^2) (1)</p>
-<p>where b(0) and b(1) are the hyper parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p1</td><td>First position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p2</td><td>Second position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Value of the kernel. </dd></dl>
-
-</div>
-</div>
-<a id="a067ecbe88c417aeec34a6c034695f0ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a067ecbe88c417aeec34a6c034695f0ff">&#9670;&nbsp;</a></span>pprofile_gp_1d_sqexp_ln_k()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function pprofile_t::pprofile_gp_1d_sqexp_ln_k </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p1</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>p2</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the one dimensional squared exponential kernel. </p>
-<p>This kernel is mathmatically the same as the squared exp kernel, but here we treat the amplitude [ b(0) ] differently. The value of b(0) used here is equal to the log of value of b(0) used in the 1d_sqexp. I'm testing this formulation to see if it helps convergence.</p>
-<p>exp(2*b(0) - (x1- x2)**2)/2*b(1)**2) (1)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p1</td><td>first position </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p2</td><td>second position </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of coefficients </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Value of the kernel </dd></dl>
-
-</div>
-</div>
-<a id="a57fba41e433baa71fc8a1cad5c7bb3cc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a57fba41e433baa71fc8a1cad5c7bb3cc">&#9670;&nbsp;</a></span>pprofile_reset_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pprofile_t::pprofile_reset_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reset the internal state of the profile. </p>
-<p>Resets the profile af array if using the guassian process.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af1936f32c455004fea58c096ff34824a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af1936f32c455004fea58c096ff34824a">&#9670;&nbsp;</a></span>pprofile_save_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pprofile_t::pprofile_save_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Save the internal state of the profile. </p>
-<p>Saves the profile af array if using the guassian process.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4d32fc72b372b92d05c02cf49e498003"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4d32fc72b372b92d05c02cf49e498003">&#9670;&nbsp;</a></span>pprofile_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine pprofile_t::pprofile_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the profile to an output file. </p>
-<p>This formats and writes out information about a parameterized profile.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>Identification of the profle. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">primed_grid Module Reference</div>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral.  
-<a href="namespaceprimed__grid.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a primed grid. This is grid the volume integral will be summed over.  <a href="structprimed__grid_1_1primed__grid__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a5418ac7b1982c948e232534948304c01"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a5418ac7b1982c948e232534948304c01">primed_grid_construct_no_vac</a> (num_v, flags, vmec, siesta_file_name, parallel, io_unit)</td></tr>
-<tr class="memdesc:a5418ac7b1982c948e232534948304c01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a5418ac7b1982c948e232534948304c01">More...</a><br /></td></tr>
-<tr class="separator:a5418ac7b1982c948e232534948304c01"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4eedac0cc0a8f9cbe1719f6998ecd3a8"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a4eedac0cc0a8f9cbe1719f6998ecd3a8">primed_grid_construct</a> (num_v, flags, vmec, vmec_vac_file, siesta_file_name, parallel, io_unit)</td></tr>
-<tr class="memdesc:a4eedac0cc0a8f9cbe1719f6998ecd3a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a4eedac0cc0a8f9cbe1719f6998ecd3a8">More...</a><br /></td></tr>
-<tr class="separator:a4eedac0cc0a8f9cbe1719f6998ecd3a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad709f0120cee7f9a6808c607f22f80eb"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#ad709f0120cee7f9a6808c607f22f80eb">primed_grid_construct_both</a> (num_v, vmec, parallel)</td></tr>
-<tr class="memdesc:ad709f0120cee7f9a6808c607f22f80eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#ad709f0120cee7f9a6808c607f22f80eb">More...</a><br /></td></tr>
-<tr class="separator:ad709f0120cee7f9a6808c607f22f80eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a11bcd75bf5333367a181bb27f7b0eb7e"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a11bcd75bf5333367a181bb27f7b0eb7e">primed_grid_construct_ju</a> (num_v, vmec, parallel)</td></tr>
-<tr class="memdesc:a11bcd75bf5333367a181bb27f7b0eb7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a11bcd75bf5333367a181bb27f7b0eb7e">More...</a><br /></td></tr>
-<tr class="separator:a11bcd75bf5333367a181bb27f7b0eb7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a6cfab84b2d1a7fa7e9814a8d5d836445">primed_grid_construct_jv</a> (num_v, vmec, parallel)</td></tr>
-<tr class="memdesc:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a6cfab84b2d1a7fa7e9814a8d5d836445">More...</a><br /></td></tr>
-<tr class="separator:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a02df21a51214feb456ac82a14473eb64"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a02df21a51214feb456ac82a14473eb64">primed_grid_construct_siesta</a> (num_v, vmec, siesta_file_name, parallel)</td></tr>
-<tr class="memdesc:a02df21a51214feb456ac82a14473eb64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a02df21a51214feb456ac82a14473eb64">More...</a><br /></td></tr>
-<tr class="separator:a02df21a51214feb456ac82a14473eb64"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d18e979c0c657b0e1e5527184387b98"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a1d18e979c0c657b0e1e5527184387b98">primed_grid_destruct</a> (this)</td></tr>
-<tr class="memdesc:a1d18e979c0c657b0e1e5527184387b98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a1d18e979c0c657b0e1e5527184387b98">More...</a><br /></td></tr>
-<tr class="separator:a1d18e979c0c657b0e1e5527184387b98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a4eedac0cc0a8f9cbe1719f6998ecd3a8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4eedac0cc0a8f9cbe1719f6998ecd3a8">&#9670;&nbsp;</a></span>primed_grid_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>vmec_vac_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object depending on the option flags.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_vac_file</td><td>Name of the zero beta vmec file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Name of the siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ad709f0120cee7f9a6808c607f22f80eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad709f0120cee7f9a6808c607f22f80eb">&#9670;&nbsp;</a></span>primed_grid_construct_both()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct_both </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. This computes the currents and positions on the primed grid. Plasma currents are obtained from Curl(B).</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a11bcd75bf5333367a181bb27f7b0eb7e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a11bcd75bf5333367a181bb27f7b0eb7e">&#9670;&nbsp;</a></span>primed_grid_construct_ju()</h2>
-
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-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct_ju </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object with an This computes the currents and positions on the primed grid. J^u plasma current is obtained from force balance.</p>
-<p>J^u = (p' + J^v*B^u)/B^v</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a6cfab84b2d1a7fa7e9814a8d5d836445"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6cfab84b2d1a7fa7e9814a8d5d836445">&#9670;&nbsp;</a></span>primed_grid_construct_jv()</h2>
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-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct_jv </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object with an This computes the currents and positions on the primed grid. J^v plasma current is obtained from force balance.</p>
-<p>J^v = (J^u*B^v - p')/B^u</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
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-<h2 class="memtitle"><span class="permalink"><a href="#a5418ac7b1982c948e232534948304c01">&#9670;&nbsp;</a></span>primed_grid_construct_no_vac()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct_no_vac </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
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-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object depending on the option flags.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Name of the siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a02df21a51214feb456ac82a14473eb64"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a02df21a51214feb456ac82a14473eb64">&#9670;&nbsp;</a></span>primed_grid_construct_siesta()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>) function, pointer primed_grid::primed_grid_construct_siesta </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_v</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object with an This computes the currents and positions on the primed grid. Plasma currents are obtained from Curl(B) of the siesta solution.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_v</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Name of the siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a1d18e979c0c657b0e1e5527184387b98">&#9670;&nbsp;</a></span>primed_grid_destruct()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine primed_grid::primed_grid_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<div class="title">prior_gaussian Module Reference</div>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>. This class implements priors of the type.  
-<a href="namespaceprior__gaussian.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a prior_guassian signal.  <a href="structprior__gaussian_1_1prior__gaussian__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a7d034a9e2a3cf1cd7be08e9aac69dd09">prior_gaussian_construct</a> (a_model, param_name, indices)</td></tr>
-<tr class="memdesc:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.  <a href="namespaceprior__gaussian.html#a7d034a9e2a3cf1cd7be08e9aac69dd09">More...</a><br /></td></tr>
-<tr class="separator:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a451bef4ea3caf5746de01d22547b12a0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a451bef4ea3caf5746de01d22547b12a0">prior_gaussian_destruct</a> (this)</td></tr>
-<tr class="memdesc:a451bef4ea3caf5746de01d22547b12a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.  <a href="namespaceprior__gaussian.html#a451bef4ea3caf5746de01d22547b12a0">More...</a><br /></td></tr>
-<tr class="separator:a451bef4ea3caf5746de01d22547b12a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#aa2303aa811e1f1d8b44f51d38d58f8a0">prior_gaussian_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespaceprior__gaussian.html#aa2303aa811e1f1d8b44f51d38d58f8a0">More...</a><br /></td></tr>
-<tr class="separator:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21dc4528c76f30db022326b0f689850f"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a21dc4528c76f30db022326b0f689850f">prior_gaussian_get_type</a> (this)</td></tr>
-<tr class="memdesc:a21dc4528c76f30db022326b0f689850f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the prior type.  <a href="namespaceprior__gaussian.html#a21dc4528c76f30db022326b0f689850f">More...</a><br /></td></tr>
-<tr class="separator:a21dc4528c76f30db022326b0f689850f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d">prior_gaussian_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a position.  <a href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d">More...</a><br /></td></tr>
-<tr class="separator:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e704a538a4729081b56bc144a05531d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d">prior_gaussian_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:a9e704a538a4729081b56bc144a05531d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a signal.  <a href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d">More...</a><br /></td></tr>
-<tr class="separator:a9e704a538a4729081b56bc144a05531d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40dde86d1f4794b3bc33005362d30c30"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30">prior_gaussian_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:a40dde86d1f4794b3bc33005362d30c30"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a cartesian position.  <a href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30">More...</a><br /></td></tr>
-<tr class="separator:a40dde86d1f4794b3bc33005362d30c30"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8">prior_gaussian_write_auxiliary</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out auxiliary signal information to an output file.  <a href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8">More...</a><br /></td></tr>
-<tr class="separator:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>. This class implements priors of the type. </p>
-<p>P(B) = Exp(-((B - mu)/sigma)^2)</p>
-<dl class="section user"><dt>Super Class:</dt><dd>prior </dd></dl>
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-<a id="a7d034a9e2a3cf1cd7be08e9aac69dd09"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d034a9e2a3cf1cd7be08e9aac69dd09">&#9670;&nbsp;</a></span>prior_gaussian_construct()</h2>
-
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-          <td class="memname">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>) function, pointer prior_gaussian::prior_gaussian_construct </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>indices</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>An instance of a <a class="el" href="namespacemodel.html">model</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>Indicies of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a451bef4ea3caf5746de01d22547b12a0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a451bef4ea3caf5746de01d22547b12a0">&#9670;&nbsp;</a></span>prior_gaussian_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine prior_gaussian::prior_gaussian_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a55d2bfaa0b9774334e42644c9b9ea88d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a55d2bfaa0b9774334e42644c9b9ea88d">&#9670;&nbsp;</a></span>prior_gaussian_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function prior_gaussian::prior_gaussian_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a prior signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te. Denisty kernels are provided by model::model_get_gp_ne. Soft X-ray Emission kernels are provided by model::model_get_gp_sxrem.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a9e704a538a4729081b56bc144a05531d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9e704a538a4729081b56bc144a05531d">&#9670;&nbsp;</a></span>prior_gaussian_get_gp_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function prior_gaussian::prior_gaussian_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a prior signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. Calls back to the <a class="el" href="namespacesignal.html">signal</a> module to call the other signal. This does not support pressure measurements.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A model_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance for the second signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a40dde86d1f4794b3bc33005362d30c30"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a40dde86d1f4794b3bc33005362d30c30">&#9670;&nbsp;</a></span>prior_gaussian_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function prior_gaussian::prior_gaussian_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a prior signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te. Denisty kernels are provided by model::model_get_gp_ne. Soft X-ray Emission kernels are provided by model::model_get_gp_sxrem. This is the second signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="aa2303aa811e1f1d8b44f51d38d58f8a0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa2303aa811e1f1d8b44f51d38d58f8a0">&#9670;&nbsp;</a></span>prior_gaussian_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) prior_gaussian::prior_gaussian_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>The modeled signal is just the value of the parameter.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a21dc4528c76f30db022326b0f689850f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a21dc4528c76f30db022326b0f689850f">&#9670;&nbsp;</a></span>prior_gaussian_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function prior_gaussian::prior_gaussian_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the prior type. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the prior type. </dd></dl>
-
-</div>
-</div>
-<a id="abac0352db48dbbc0a19808ad5ffa8ac8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abac0352db48dbbc0a19808ad5ffa8ac8">&#9670;&nbsp;</a></span>prior_gaussian_write_auxiliary()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine prior_gaussian::prior_gaussian_write_auxiliary </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out auxiliary signal information to an output file. </p>
-<p>Writes out the s_name and coefficient of the combined signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<p>Defines functions for measuring an tabulating performance of function and subroutine calls. These routines are only active when the PROFILE_ON macro is defined.  
-<a href="namespaceprofiler.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full table of profiled functions.  <a href="structprofiler_1_1profiler__bucket.html#details">More...</a><br /></td></tr>
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ab266b6acb4f5255931690b43d31780e5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#ab266b6acb4f5255931690b43d31780e5">profiler_construct</a> ()</td></tr>
-<tr class="memdesc:ab266b6acb4f5255931690b43d31780e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a profiler.  <a href="namespaceprofiler.html#ab266b6acb4f5255931690b43d31780e5">More...</a><br /></td></tr>
-<tr class="separator:ab266b6acb4f5255931690b43d31780e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a641db19a17afa3c6f3084c859aa86aa1"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a641db19a17afa3c6f3084c859aa86aa1">profiler_destruct</a> ()</td></tr>
-<tr class="memdesc:a641db19a17afa3c6f3084c859aa86aa1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a profiler.  <a href="namespaceprofiler.html#a641db19a17afa3c6f3084c859aa86aa1">More...</a><br /></td></tr>
-<tr class="separator:a641db19a17afa3c6f3084c859aa86aa1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af5df6115cae0fb6066c65922c4c34240"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#af5df6115cae0fb6066c65922c4c34240">profiler_set_stop_time</a> (symbol_name, start_time)</td></tr>
-<tr class="memdesc:af5df6115cae0fb6066c65922c4c34240"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the end time of profiled function.  <a href="namespaceprofiler.html#af5df6115cae0fb6066c65922c4c34240">More...</a><br /></td></tr>
-<tr class="separator:af5df6115cae0fb6066c65922c4c34240"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a36371403894ef9b960bac1e58aef5033"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a36371403894ef9b960bac1e58aef5033">profiler_get_start_time</a> ()</td></tr>
-<tr class="memdesc:a36371403894ef9b960bac1e58aef5033"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the start time of profiled function.  <a href="namespaceprofiler.html#a36371403894ef9b960bac1e58aef5033">More...</a><br /></td></tr>
-<tr class="separator:a36371403894ef9b960bac1e58aef5033"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac00fd28da21b60f054b396a00c6546ae"><td class="memItemLeft" align="right" valign="top">recursive subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#ac00fd28da21b60f054b396a00c6546ae">profiler_sort</a> (low_index, high_index)</td></tr>
-<tr class="memdesc:ac00fd28da21b60f054b396a00c6546ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sorts the profile table based on the average call time.  <a href="namespaceprofiler.html#ac00fd28da21b60f054b396a00c6546ae">More...</a><br /></td></tr>
-<tr class="separator:ac00fd28da21b60f054b396a00c6546ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a824701798f5229e743f741d4655526ab"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a824701798f5229e743f741d4655526ab">profiler_hash_function</a> (symbol_name)</td></tr>
-<tr class="memdesc:a824701798f5229e743f741d4655526ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the symbol name.  <a href="namespaceprofiler.html#a824701798f5229e743f741d4655526ab">More...</a><br /></td></tr>
-<tr class="separator:a824701798f5229e743f741d4655526ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0770360f61f6885a34f3983a4ad9625b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a0770360f61f6885a34f3983a4ad9625b">profiler_write</a> (iou)</td></tr>
-<tr class="memdesc:a0770360f61f6885a34f3983a4ad9625b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the profiled data to an output file.  <a href="namespaceprofiler.html#a0770360f61f6885a34f3983a4ad9625b">More...</a><br /></td></tr>
-<tr class="separator:a0770360f61f6885a34f3983a4ad9625b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-Variables</h2></td></tr>
-<tr class="memitem:a8198497a26b6fc30d31c623f7aee2dd3"><td class="memItemLeft" align="right" valign="top"><a id="a8198497a26b6fc30d31c623f7aee2dd3"></a>
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-<tr class="memdesc:a8198497a26b6fc30d31c623f7aee2dd3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max string length. <br /></td></tr>
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-<tr class="memitem:aa864b887a08e8026d904ade234c18b5a"><td class="memItemLeft" align="right" valign="top"><a id="aa864b887a08e8026d904ade234c18b5a"></a>
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-<tr class="memdesc:aa864b887a08e8026d904ade234c18b5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max number of buckets. <br /></td></tr>
-<tr class="separator:aa864b887a08e8026d904ade234c18b5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc9a352239240fe921860cfaba7fea42"><td class="memItemLeft" align="right" valign="top"><a id="afc9a352239240fe921860cfaba7fea42"></a>
-type(<a class="el" href="structprofiler_1_1profiler__bucket.html">profiler_bucket</a>), dimension(<a class="el" href="namespaceprofiler.html#aa864b887a08e8026d904ade234c18b5a">profiler_bucket_size</a>), save&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#afc9a352239240fe921860cfaba7fea42">buckets</a></td></tr>
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-<tr class="separator:afc9a352239240fe921860cfaba7fea42"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines functions for measuring an tabulating performance of function and subroutine calls. These routines are only active when the PROFILE_ON macro is defined. </p>
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-<a id="ab266b6acb4f5255931690b43d31780e5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab266b6acb4f5255931690b43d31780e5">&#9670;&nbsp;</a></span>profiler_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">subroutine profiler::profiler_construct</td>
-        </tr>
-      </table>
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-
-<p>Construct a profiler. </p>
-<p>This only sets up OpenMP locks if OpenMP support is compiled in. The profile table uses a fixed memory size in global memory. </p>
-
-</div>
-</div>
-<a id="a641db19a17afa3c6f3084c859aa86aa1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a641db19a17afa3c6f3084c859aa86aa1">&#9670;&nbsp;</a></span>profiler_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">subroutine profiler::profiler_destruct</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a profiler. </p>
-<p>This only destroys OpenMP locks if OpenMP support is compiled in. The profile table uses a fixed memory size in global memory. </p>
-
-</div>
-</div>
-<a id="a36371403894ef9b960bac1e58aef5033"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a36371403894ef9b960bac1e58aef5033">&#9670;&nbsp;</a></span>profiler_get_start_time()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function profiler::profiler_get_start_time</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the start time of profiled function. </p>
-<p>Gets a starting time of a function. When profiling is turned off, this returns 0 instead.</p>
-<dl class="section return"><dt>Returns</dt><dd>The start time of a function. </dd></dl>
-
-</div>
-</div>
-<a id="a824701798f5229e743f741d4655526ab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a824701798f5229e743f741d4655526ab">&#9670;&nbsp;</a></span>profiler_hash_function()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">integer function profiler::profiler_hash_function </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
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-
-<p>Computes a hash for the symbol name. </p>
-<p>The hash is computed using the djb2 algorithm. </p><pre class="fragment">hash_0 = 5381
-hash_i+1 = hash_i * 33 ^ c_i
-</pre><p> The magic numbers of 5381 and 33 help the hash function avoid collision and good distribution.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">symbol_name</td><td>Name of the symbol to hash. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The hash value of the symbol. </dd></dl>
-
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-<a id="af5df6115cae0fb6066c65922c4c34240"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af5df6115cae0fb6066c65922c4c34240">&#9670;&nbsp;</a></span>profiler_set_stop_time()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine profiler::profiler_set_stop_time </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>symbol_name</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>start_time</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the end time of profiled function. </p>
-<p>Sets the end time of profiled function and adds the result to the table. The symbol name is hashed to determine the index of the array it lives in. If the index is full, the next instance is used. When profiling is turned off, this does nothing. To avoid race conditons in multi threaded code, this must only be run by one thread or process at a time.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">symbol_name</td><td>Name of the symbol to profile. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">start_time</td><td>Starting time of the symbol call. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac00fd28da21b60f054b396a00c6546ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac00fd28da21b60f054b396a00c6546ae">&#9670;&nbsp;</a></span>profiler_sort()</h2>
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-          <td class="memname">recursive subroutine profiler::profiler_sort </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>low_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>high_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sorts the profile table based on the average call time. </p>
-<p>A recursive merge sort algorithm.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">low_index</td><td>Lower index to sort. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">high_index</td><td>Higher index to sort. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0770360f61f6885a34f3983a4ad9625b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0770360f61f6885a34f3983a4ad9625b">&#9670;&nbsp;</a></span>profiler_write()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine profiler::profiler_write </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em></td><td>)</td>
-          <td></td>
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-      </table>
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-
-<p>Write out the profiled data to an output file. </p>
-<p>This loops through the buckets and prints out the profiled data. Any empty buckets get skiped.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
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-
-<p>Defines the base class of the type <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>. This class contains the minimization algorithm.  
-<a href="namespacereconstruction.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacereconstruction_1_1reconstruction__write__step.html">reconstruction_write_step</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for writing out step data.  <a href="interfacereconstruction_1_1reconstruction__write__step.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a83008030c2512b04eb98f02af3ee7f73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.  <a href="namespacereconstruction.html#a83008030c2512b04eb98f02af3ee7f73">More...</a><br /></td></tr>
-<tr class="separator:a83008030c2512b04eb98f02af3ee7f73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa851e7448de9605070f9c6f86bc917e8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aa851e7448de9605070f9c6f86bc917e8">reconstruction_destruct</a> (this)</td></tr>
-<tr class="memdesc:aa851e7448de9605070f9c6f86bc917e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.  <a href="namespacereconstruction.html#aa851e7448de9605070f9c6f86bc917e8">More...</a><br /></td></tr>
-<tr class="separator:aa851e7448de9605070f9c6f86bc917e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a97b9796ac7fc5280bb61f2b9142ebbee"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a97b9796ac7fc5280bb61f2b9142ebbee">reconstruction_get_k_use</a> (this, num_sv)</td></tr>
-<tr class="memdesc:a97b9796ac7fc5280bb61f2b9142ebbee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of singular values to use.  <a href="namespacereconstruction.html#a97b9796ac7fc5280bb61f2b9142ebbee">More...</a><br /></td></tr>
-<tr class="separator:a97b9796ac7fc5280bb61f2b9142ebbee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8f4c0528a4bc5caadd59f08eeaf2f05f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a8f4c0528a4bc5caadd59f08eeaf2f05f">reconstruction_get_exp_dg2</a> (this, delta_a)</td></tr>
-<tr class="memdesc:a8f4c0528a4bc5caadd59f08eeaf2f05f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the expected dg^2 size.  <a href="namespacereconstruction.html#a8f4c0528a4bc5caadd59f08eeaf2f05f">More...</a><br /></td></tr>
-<tr class="separator:a8f4c0528a4bc5caadd59f08eeaf2f05f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab2fdf4a2adcf3f1b03537f3928e32f03"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ab2fdf4a2adcf3f1b03537f3928e32f03">reconstruction_get_exp_g2</a> (this, delta_a)</td></tr>
-<tr class="memdesc:ab2fdf4a2adcf3f1b03537f3928e32f03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the expected g^2 size.  <a href="namespacereconstruction.html#ab2fdf4a2adcf3f1b03537f3928e32f03">More...</a><br /></td></tr>
-<tr class="separator:ab2fdf4a2adcf3f1b03537f3928e32f03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad364ff7c16ea1de63c90635257fd2dc"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aad364ff7c16ea1de63c90635257fd2dc">reconstruction_get_g2</a> (this)</td></tr>
-<tr class="memdesc:aad364ff7c16ea1de63c90635257fd2dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the current g^2.  <a href="namespacereconstruction.html#aad364ff7c16ea1de63c90635257fd2dc">More...</a><br /></td></tr>
-<tr class="separator:aad364ff7c16ea1de63c90635257fd2dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aab7abf0d1ec5b8cf95f436c8fd949836"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aab7abf0d1ec5b8cf95f436c8fd949836">reconstruction_get_lastg2</a> (this)</td></tr>
-<tr class="memdesc:aab7abf0d1ec5b8cf95f436c8fd949836"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the last g^2.  <a href="namespacereconstruction.html#aab7abf0d1ec5b8cf95f436c8fd949836">More...</a><br /></td></tr>
-<tr class="separator:aab7abf0d1ec5b8cf95f436c8fd949836"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ad06056417e4dffb8c2bb40ccb0e3284b">reconstruction_get_dg2</a> (this)</td></tr>
-<tr class="memdesc:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the change in g^2.  <a href="namespacereconstruction.html#ad06056417e4dffb8c2bb40ccb0e3284b">More...</a><br /></td></tr>
-<tr class="separator:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebe0eed2575d30465603e1a65babbeaa"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aebe0eed2575d30465603e1a65babbeaa">reconstruction_eval_e</a> (this, signals, a_model, gaussp, eq_steps, iou, eq_comm)</td></tr>
-<tr class="memdesc:aebe0eed2575d30465603e1a65babbeaa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the e vector for a reconstruction step.  <a href="namespacereconstruction.html#aebe0eed2575d30465603e1a65babbeaa">More...</a><br /></td></tr>
-<tr class="separator:aebe0eed2575d30465603e1a65babbeaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05b135cafa07fb268af718143b1045ca"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a05b135cafa07fb268af718143b1045ca">reconstruction_eval_f</a> (this, derived_params, a_model)</td></tr>
-<tr class="memdesc:a05b135cafa07fb268af718143b1045ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the f vector for a reconstruction step.  <a href="namespacereconstruction.html#a05b135cafa07fb268af718143b1045ca">More...</a><br /></td></tr>
-<tr class="separator:a05b135cafa07fb268af718143b1045ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03f66db6b79a6227bd62cb903a4b33f9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a03f66db6b79a6227bd62cb903a4b33f9">reconstruction_eval_jacobians</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a03f66db6b79a6227bd62cb903a4b33f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the jacobian.  <a href="namespacereconstruction.html#a03f66db6b79a6227bd62cb903a4b33f9">More...</a><br /></td></tr>
-<tr class="separator:a03f66db6b79a6227bd62cb903a4b33f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3e5878cd436ed7442689bb2e314d9109"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a3e5878cd436ed7442689bb2e314d9109">reconstruction_eval_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a3e5878cd436ed7442689bb2e314d9109"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the proper quasi-Newton step.  <a href="namespacereconstruction.html#a3e5878cd436ed7442689bb2e314d9109">More...</a><br /></td></tr>
-<tr class="separator:a3e5878cd436ed7442689bb2e314d9109"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7cd22ee027910c53365e4320645a1798"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a7cd22ee027910c53365e4320645a1798">reconstruction_sl_step</a> (this, k_use, step_size, delta_a)</td></tr>
-<tr class="memdesc:a7cd22ee027910c53365e4320645a1798"><td class="mdescLeft">&#160;</td><td class="mdescRight">Take a straight line step.  <a href="namespacereconstruction.html#a7cd22ee027910c53365e4320645a1798">More...</a><br /></td></tr>
-<tr class="separator:a7cd22ee027910c53365e4320645a1798"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60bf72f758cf6286abaf39ef18cb533b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a60bf72f758cf6286abaf39ef18cb533b">reconstruction_seg_step</a> (this, k_use, step_size, delta_a)</td></tr>
-<tr class="memdesc:a60bf72f758cf6286abaf39ef18cb533b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Take a segmented path step.  <a href="namespacereconstruction.html#a60bf72f758cf6286abaf39ef18cb533b">More...</a><br /></td></tr>
-<tr class="separator:a60bf72f758cf6286abaf39ef18cb533b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a9fb4f742bf8db5975f91c4bc9285bf8a">reconstruction_lm_step</a> (this, k_use, step_size, delta_a)</td></tr>
-<tr class="memdesc:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Take a Levenberg-Marquardt step.  <a href="namespacereconstruction.html#a9fb4f742bf8db5975f91c4bc9285bf8a">More...</a><br /></td></tr>
-<tr class="separator:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">reconstruction_lm_rootfind</a> (this, k_use, lambda_default, step_size, utdote)</td></tr>
-<tr class="memdesc:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Root find for Levenberg-Marquardt step.  <a href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">More...</a><br /></td></tr>
-<tr class="separator:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9df684288ec8bcdbe3b28e6f0422537c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">reconstruction_lm_function</a> (this, f_sqrd, step_size_sqrd, lambda)</td></tr>
-<tr class="memdesc:a9df684288ec8bcdbe3b28e6f0422537c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Levenberg-Marquardt function.  <a href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">More...</a><br /></td></tr>
-<tr class="separator:a9df684288ec8bcdbe3b28e6f0422537c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a5e20cf78de4c712e93ffa8a955f38e0b">reconstruction_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Step the reconstruction.  <a href="namespacereconstruction.html#a5e20cf78de4c712e93ffa8a955f38e0b">More...</a><br /></td></tr>
-<tr class="separator:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28543db9f9e3a81655f836fd230086c9"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a28543db9f9e3a81655f836fd230086c9">reconstruction_try_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, max_step, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a28543db9f9e3a81655f836fd230086c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Try step size.  <a href="namespacereconstruction.html#a28543db9f9e3a81655f836fd230086c9">More...</a><br /></td></tr>
-<tr class="separator:a28543db9f9e3a81655f836fd230086c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a854eb885feba6eb040e61962347f5a1d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a854eb885feba6eb040e61962347f5a1d">reconstruction_eval_sem</a> (this, params, signals, derived_params)</td></tr>
-<tr class="memdesc:a854eb885feba6eb040e61962347f5a1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the parameter covariance and signal effectiveness.  <a href="namespacereconstruction.html#a854eb885feba6eb040e61962347f5a1d">More...</a><br /></td></tr>
-<tr class="separator:a854eb885feba6eb040e61962347f5a1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a93ef33f5f3c73c26a245afe2e0c42067"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a93ef33f5f3c73c26a245afe2e0c42067">reconstruction_invert_matrix</a> (this, matrix, sub, name)</td></tr>
-<tr class="memdesc:a93ef33f5f3c73c26a245afe2e0c42067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Invert an M x N matrix.  <a href="namespacereconstruction.html#a93ef33f5f3c73c26a245afe2e0c42067">More...</a><br /></td></tr>
-<tr class="separator:a93ef33f5f3c73c26a245afe2e0c42067"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8592936bc0d810a89a8119dd0fcb4304"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a8592936bc0d810a89a8119dd0fcb4304">reconstruction_normalize_correlations</a> (params)</td></tr>
-<tr class="memdesc:a8592936bc0d810a89a8119dd0fcb4304"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normalize a correlation matrix.  <a href="namespacereconstruction.html#a8592936bc0d810a89a8119dd0fcb4304">More...</a><br /></td></tr>
-<tr class="separator:a8592936bc0d810a89a8119dd0fcb4304"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a304df94be496fd98208fd6572ea3c513"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a304df94be496fd98208fd6572ea3c513">reconstruction_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a304df94be496fd98208fd6572ea3c513"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a reconstruction.  <a href="namespacereconstruction.html#a304df94be496fd98208fd6572ea3c513">More...</a><br /></td></tr>
-<tr class="separator:a304df94be496fd98208fd6572ea3c513"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85ec5fed3e79ce85950af391a015303d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a85ec5fed3e79ce85950af391a015303d">reconstruction_write_step1</a> (this, step_type, iou)</td></tr>
-<tr class="memdesc:a85ec5fed3e79ce85950af391a015303d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a reconstruction step attempt.  <a href="namespacereconstruction.html#a85ec5fed3e79ce85950af391a015303d">More...</a><br /></td></tr>
-<tr class="separator:a85ec5fed3e79ce85950af391a015303d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a298d4515dba754c1cfa422a67c4a6e50"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a298d4515dba754c1cfa422a67c4a6e50">reconstruction_write_step2</a> (this, iou)</td></tr>
-<tr class="memdesc:a298d4515dba754c1cfa422a67c4a6e50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a final reconstruction step.  <a href="namespacereconstruction.html#a298d4515dba754c1cfa422a67c4a6e50">More...</a><br /></td></tr>
-<tr class="separator:a298d4515dba754c1cfa422a67c4a6e50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a373ad3d2bfa182a7e382c78037eb6e25"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a373ad3d2bfa182a7e382c78037eb6e25">reconstruction_restart</a> (this, result_ncid, current_step, signals, derived_params, a_model)</td></tr>
-<tr class="memdesc:a373ad3d2bfa182a7e382c78037eb6e25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart from result file.  <a href="namespacereconstruction.html#a373ad3d2bfa182a7e382c78037eb6e25">More...</a><br /></td></tr>
-<tr class="separator:a373ad3d2bfa182a7e382c78037eb6e25"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ae69288ef17dae11c7af8f4eb7c6cca8d">reconstruction_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize state to children.  <a href="namespacereconstruction.html#ae69288ef17dae11c7af8f4eb7c6cca8d">More...</a><br /></td></tr>
-<tr class="separator:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a37ca9ee0f2fd85d905ea78872669b432"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a37ca9ee0f2fd85d905ea78872669b432">reconstruction_sync_svd</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a37ca9ee0f2fd85d905ea78872669b432"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize svd.  <a href="namespacereconstruction.html#a37ca9ee0f2fd85d905ea78872669b432">More...</a><br /></td></tr>
-<tr class="separator:a37ca9ee0f2fd85d905ea78872669b432"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad911e0912a500e5566f4d751bef25b50"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ad911e0912a500e5566f4d751bef25b50">reconstruction_sync_parent</a> (this, params, num_signal, num_derived_params, stride, offset, recon_comm)</td></tr>
-<tr class="memdesc:ad911e0912a500e5566f4d751bef25b50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize child state back to parent.  <a href="namespacereconstruction.html#ad911e0912a500e5566f4d751bef25b50">More...</a><br /></td></tr>
-<tr class="separator:ad911e0912a500e5566f4d751bef25b50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:aed2cb2c702c10d9dce1b0591bc06807e"><td class="memItemLeft" align="right" valign="top"><a id="aed2cb2c702c10d9dce1b0591bc06807e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aed2cb2c702c10d9dce1b0591bc06807e">reconstruction_no_step_type</a> = -1</td></tr>
-<tr class="memdesc:aed2cb2c702c10d9dce1b0591bc06807e"><td class="mdescLeft">&#160;</td><td class="mdescRight">No reconstruction step type. <br /></td></tr>
-<tr class="separator:aed2cb2c702c10d9dce1b0591bc06807e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afba83f8244382977e7b285a145896598"><td class="memItemLeft" align="right" valign="top"><a id="afba83f8244382977e7b285a145896598"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#afba83f8244382977e7b285a145896598">reconstruction_sl_step_type</a> = 0</td></tr>
-<tr class="memdesc:afba83f8244382977e7b285a145896598"><td class="mdescLeft">&#160;</td><td class="mdescRight">Straight line reconstruction step type. <br /></td></tr>
-<tr class="separator:afba83f8244382977e7b285a145896598"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7657feeddb327f040f5113551cf9c7a4"><td class="memItemLeft" align="right" valign="top"><a id="a7657feeddb327f040f5113551cf9c7a4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a7657feeddb327f040f5113551cf9c7a4">reconstruction_lm_step_type</a> = 1</td></tr>
-<tr class="memdesc:a7657feeddb327f040f5113551cf9c7a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Levenberg-Marquardt reconstruction step type. <br /></td></tr>
-<tr class="separator:a7657feeddb327f040f5113551cf9c7a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec1d97990ec03ad2134005a2b7ede596"><td class="memItemLeft" align="right" valign="top"><a id="aec1d97990ec03ad2134005a2b7ede596"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aec1d97990ec03ad2134005a2b7ede596">reconstruction_seg_step_type</a> = 2</td></tr>
-<tr class="memdesc:aec1d97990ec03ad2134005a2b7ede596"><td class="mdescLeft">&#160;</td><td class="mdescRight">Segmented path reconstruction step type. <br /></td></tr>
-<tr class="separator:aec1d97990ec03ad2134005a2b7ede596"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ade1b7d51a807205755790a61f672a92b"><td class="memItemLeft" align="right" valign="top"><a id="ade1b7d51a807205755790a61f672a92b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ade1b7d51a807205755790a61f672a92b">reconstruction_max_step_try</a> = 5</td></tr>
-<tr class="memdesc:ade1b7d51a807205755790a61f672a92b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of reconstruction step attemps. <br /></td></tr>
-<tr class="separator:ade1b7d51a807205755790a61f672a92b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>. This class contains the minimization algorithm. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a83008030c2512b04eb98f02af3ee7f73"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a83008030c2512b04eb98f02af3ee7f73">&#9670;&nbsp;</a></span>reconstruction_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>) function, pointer reconstruction::reconstruction_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_derived_parameters</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_parameters</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>step_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_max</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_svd</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_eff</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_marg_eff</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_delta_a</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_dg2</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>last_para_signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>cut_inv_svd</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_steps</td><td>Number of reconstruction steps. <a class="el" href="namespacev3fit__input.html#adc0364b9f818950f73a6812862c2eb9c">v3fit_input::nrstep</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_signals</td><td>Number of signals. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_derived_parameters</td><td>Number of derived parameters. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_parameters</td><td>Number of reconstruction parameters. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_type</td><td>Reconstruction step type. <a class="el" href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">v3fit_input::step_type</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_max</td><td>Reconstruction step size. <a class="el" href="namespacev3fit__input.html#acb9417098adb81002267eb6a99f64562">v3fit_input::astep_max</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_svd</td><td>Cutoff value for relative singular values. <a class="el" href="namespacev3fit__input.html#ad98c066d04c0f25696a91fed7d54e8ef">v3fit_input::cut_svd</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_eff</td><td>Cutoff value for expected step efficiency. <a class="el" href="namespacev3fit__input.html#a46af949ef5d76853b993d99767e542f1">v3fit_input::cut_eff</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_marg_eff</td><td>Cutoff value for expected marginal step efficiency. <a class="el" href="namespacev3fit__input.html#a403d25aae2bd98397290ca374a793c95">v3fit_input::cut_marg_eff</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_delta_a</td><td>Cutoff value for expected step size. <a class="el" href="namespacev3fit__input.html#a8aa4f835a2cf486c7567dacbc42da314">v3fit_input::cut_delta_a</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_dg2</td><td>Cutoff value for expected change in g^2. <a class="el" href="namespacev3fit__input.html#ab1dc0a024974864d287c68ebd3fa4dcb">v3fit_input::cut_dg2</a> </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_para_signal</td><td>Index of the last signal that can be parallelized. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cut_inv_svd</td><td>Cutoff value for the pseudo inverse singular values. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="aa851e7448de9605070f9c6f86bc917e8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa851e7448de9605070f9c6f86bc917e8">&#9670;&nbsp;</a></span>reconstruction_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aebe0eed2575d30465603e1a65babbeaa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aebe0eed2575d30465603e1a65babbeaa">&#9670;&nbsp;</a></span>reconstruction_eval_e()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function reconstruction::reconstruction_eval_e </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>gaussp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the e vector for a reconstruction step. </p>
-<p>Evaluates the e vector after soving the equilibrium. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacesignal.html#aa0480190087d9d45e35ec9e9b345ef6d" title="Calculates the e contribution of a signal.">signal::signal_get_e</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gaussp</td><td>Array of <a class="el" href="structguassian__process_1_1gaussp__class.html">guassian_process::gaussp_class</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">eq_steps</td><td>Number of steps for the equilibrium to take. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the equilibrium converged and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a05b135cafa07fb268af718143b1045ca"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05b135cafa07fb268af718143b1045ca">&#9670;&nbsp;</a></span>reconstruction_eval_f()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_eval_f </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the f vector for a reconstruction step. </p>
-<p>Evaluates the f vector after soving the equilibrium. </p><dl class="section see"><dt>See also</dt><dd>param::param_get_value</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">derived_params</td><td>Array of param objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a03f66db6b79a6227bd62cb903a4b33f9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a03f66db6b79a6227bd62cb903a4b33f9">&#9670;&nbsp;</a></span>reconstruction_eval_jacobians()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_eval_jacobians </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>locks</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>gaussp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the jacobian. </p>
-<p>Evaluates the jacobian. When using MPI, reach row of the jacobian is evaluated in parallel.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">derived_params</td><td>Array of derived param objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of parameter objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">eq_steps</td><td>Number of steps for the equilibrium to take. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the child jacobian processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a854eb885feba6eb040e61962347f5a1d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a854eb885feba6eb040e61962347f5a1d">&#9670;&nbsp;</a></span>reconstruction_eval_sem()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine reconstruction::reconstruction_eval_sem </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>derived_params</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the parameter covariance and signal effectiveness. </p>
-<p>Calculates the signal effectiveness matrix. This value is stored in parameter::param_class::sem. To find the signal effectiveness, an intermediate step computes the parameter covariance. Computes the derived parameter covariance matrix also.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of parameter objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">derived_params</td><td>Array of parameter objects. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3e5878cd436ed7442689bb2e314d9109"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3e5878cd436ed7442689bb2e314d9109">&#9670;&nbsp;</a></span>reconstruction_eval_step()</h2>
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-<div class="memitem">
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-          <td class="memname">integer function reconstruction::reconstruction_eval_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>locks</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>gaussp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Evaluate the proper quasi-Newton step. </p>
-<p>Evaluates the jacobian, performs the SVD and computes the quasi-Newton step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">derived_params</td><td>Array of derived param objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of parameter objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">eq_steps</td><td>Number of steps for the equilibrium to take. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the child jacobian processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The number of singular values to use. </dd></dl>
-
-</div>
-</div>
-<a id="ad06056417e4dffb8c2bb40ccb0e3284b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad06056417e4dffb8c2bb40ccb0e3284b">&#9670;&nbsp;</a></span>reconstruction_get_dg2()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_get_dg2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the change in g^2. </p>
-<p>Gets the change in g^2 from the last reconstruction step to the current step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The last g^2. </dd></dl>
-
-</div>
-</div>
-<a id="a8f4c0528a4bc5caadd59f08eeaf2f05f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8f4c0528a4bc5caadd59f08eeaf2f05f">&#9670;&nbsp;</a></span>reconstruction_get_exp_dg2()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_get_exp_dg2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>delta_a</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the expected dg^2 size. </p>
-<p>Estimates the change in g^2. Equation 22 in Hanson et. al. doi:10.1088/0029-5515/49/7/075031 Note: there is a typo in equation 22. The - sign in the last term should be a plus sign.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">delta_a</td><td>The normalized parameter step. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Change expected change in g^2. </dd></dl>
-
-</div>
-</div>
-<a id="ab2fdf4a2adcf3f1b03537f3928e32f03"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab2fdf4a2adcf3f1b03537f3928e32f03">&#9670;&nbsp;</a></span>reconstruction_get_exp_g2()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_get_exp_g2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>delta_a</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the expected g^2 size. </p>
-<p>Estimates the g^2. Equation 22 in Hanson et. al. doi:10.1088/0029-5515/49/7/075031</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">delta_a</td><td>The normalized parameter step. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Expected g^2. </dd></dl>
-
-</div>
-</div>
-<a id="aad364ff7c16ea1de63c90635257fd2dc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aad364ff7c16ea1de63c90635257fd2dc">&#9670;&nbsp;</a></span>reconstruction_get_g2()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function reconstruction::reconstruction_get_g2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the current g^2. </p>
-<p>Gets the g^2 value for the current reconstruction step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Current g^2. </dd></dl>
-
-</div>
-</div>
-<a id="a97b9796ac7fc5280bb61f2b9142ebbee"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a97b9796ac7fc5280bb61f2b9142ebbee">&#9670;&nbsp;</a></span>reconstruction_get_k_use()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function reconstruction::reconstruction_get_k_use </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_sv</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Get the number of singular values to use. </p>
-<p>Number of sigular values to uses is determined by the various cutoffs.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_sv</td><td>Total number of sigular values. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The number of sigular values to use. </dd></dl>
-
-</div>
-</div>
-<a id="aab7abf0d1ec5b8cf95f436c8fd949836"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aab7abf0d1ec5b8cf95f436c8fd949836">&#9670;&nbsp;</a></span>reconstruction_get_lastg2()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_get_lastg2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the last g^2. </p>
-<p>Gets the g^2 value for the last reconstruction step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The last g^2. </dd></dl>
-
-</div>
-</div>
-<a id="a93ef33f5f3c73c26a245afe2e0c42067"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a93ef33f5f3c73c26a245afe2e0c42067">&#9670;&nbsp;</a></span>reconstruction_invert_matrix()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_invert_matrix </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:), pointer&#160;</td>
-          <td class="paramname"><em>matrix</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>sub</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Invert an M x N matrix. </p>
-<p>Perform a pseudo-inversion using a singular value decomposition. This subroutine destroys the original matrix.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">matrix</td><td>The matrix to invert. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sub</td><td>The subroutine of the matrix this was called from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>The name of the matrix to be inverted. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9df684288ec8bcdbe3b28e6f0422537c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9df684288ec8bcdbe3b28e6f0422537c">&#9670;&nbsp;</a></span>reconstruction_lm_function()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_lm_function </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>f_sqrd</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_size_sqrd</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>lambda</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Levenberg-Marquardt function. </p>
-<p>Function used by <a class="el" href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">reconstruction_lm_rootfind</a> for a Levenberg-Marquardt step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">f_sqrd</td><td>f^2 </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_size_sqrd</td><td>Square of the current step size. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lambda</td><td>Lambda value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>F(lambda) </dd></dl>
-
-</div>
-</div>
-<a id="a2d7ee6781b0183caa35e8a38c7a29d50"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2d7ee6781b0183caa35e8a38c7a29d50">&#9670;&nbsp;</a></span>reconstruction_lm_rootfind()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function reconstruction::reconstruction_lm_rootfind </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>k_use</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>lambda_default</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_size</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>utdote</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Root find for Levenberg-Marquardt step. </p>
-<p>Find the root of the <a class="el" href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">reconstruction_lm_function</a> for a Levenberg-Marquardt step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">k_use</td><td>Number of singular values to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lambda_default</td><td>The default lambda. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_size</td><td>Current step size limit. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">utdote</td><td>Vector of U^T * e </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The root lambda. </dd></dl>
-
-</div>
-</div>
-<a id="a9fb4f742bf8db5975f91c4bc9285bf8a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9fb4f742bf8db5975f91c4bc9285bf8a">&#9670;&nbsp;</a></span>reconstruction_lm_step()</h2>
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-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function reconstruction::reconstruction_lm_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>k_use</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_size</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>delta_a</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Take a Levenberg-Marquardt step. </p>
-<p>Determines the normalized change in parameters for a Levenberg-Marquardt step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">k_use</td><td>Number of singular values to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_size</td><td>Current step size limit. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">delta_a</td><td>Normalized change in parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The step size used. </dd></dl>
-
-</div>
-</div>
-<a id="a8592936bc0d810a89a8119dd0fcb4304"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8592936bc0d810a89a8119dd0fcb4304">&#9670;&nbsp;</a></span>reconstruction_normalize_correlations()</h2>
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-<div class="memitem">
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-      <table class="memname">
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-          <td class="memname">subroutine reconstruction::reconstruction_normalize_correlations </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Normalize a correlation matrix. </p>
-<p>Normalizes a correlation matrix by dividing by the sigmas for that element. This method is static so it doesn't require a this parameter.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of parameter to normalize the correlations of. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a373ad3d2bfa182a7e382c78037eb6e25"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a373ad3d2bfa182a7e382c78037eb6e25">&#9670;&nbsp;</a></span>reconstruction_restart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_restart </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Restart from result file. </p>
-<p>Restarts the reconstruction from the result file. Note, that there is an external step counter and an internal step counter. Internally we will restart current step at zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to read variables from. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a60bf72f758cf6286abaf39ef18cb533b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a60bf72f758cf6286abaf39ef18cb533b">&#9670;&nbsp;</a></span>reconstruction_seg_step()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function reconstruction::reconstruction_seg_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>k_use</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_size</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>delta_a</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Take a segmented path step. </p>
-<p>Determines the normalized change in parameters for a segmented path step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">k_use</td><td>Number of singular values to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_size</td><td>Current step size limit. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">delta_a</td><td>Normalized change in parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The step size used. </dd></dl>
-
-</div>
-</div>
-<a id="a7cd22ee027910c53365e4320645a1798"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7cd22ee027910c53365e4320645a1798">&#9670;&nbsp;</a></span>reconstruction_sl_step()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function reconstruction::reconstruction_sl_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>k_use</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>step_size</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>delta_a</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Take a straight line step. </p>
-<p>Determines the normalized change in parameters for a straight line step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">k_use</td><td>Number of singular values to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_size</td><td>Current step size limit. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">delta_a</td><td>Normalized change in parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The step size used. </dd></dl>
-
-</div>
-</div>
-<a id="a5e20cf78de4c712e93ffa8a955f38e0b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5e20cf78de4c712e93ffa8a955f38e0b">&#9670;&nbsp;</a></span>reconstruction_step()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function reconstruction::reconstruction_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>locks</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>gaussp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Step the reconstruction. </p>
-<p>Advance the reconstruction by a single step. This is the main V3FIT algorithm.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">locks</td><td>Array of lock objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gaussp</td><td>Array of <a class="el" href="structguassian__process_1_1gaussp__class.html">guassian_process::gaussp_class</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of <a class="el" href="structv3fit__params_1_1param__class.html">v3fit_params::param_class</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">eq_steps</td><td>Number of steps the equilibrium took. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the child jacobian processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the step was successfull and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="ad911e0912a500e5566f4d751bef25b50"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad911e0912a500e5566f4d751bef25b50">&#9670;&nbsp;</a></span>reconstruction_sync_parent()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_sync_parent </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_signal</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramkey"></td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>recon_comm</em>&#160;</td>
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-        <tr>
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-
-<p>Syncronize child state back to parent. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_params</td><td>Number of reconstruction parameters. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_signal</td><td>Number of signals. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_derived_params</td><td>Number of derived parameters. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">stride</td><td>Length work size for each process. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">offset</td><td>Start offset for each process. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI recon_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
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-<a id="ae69288ef17dae11c7af8f4eb7c6cca8d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae69288ef17dae11c7af8f4eb7c6cca8d">&#9670;&nbsp;</a></span>reconstruction_sync_state()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine reconstruction::reconstruction_sync_state </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize state to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI recon_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a37ca9ee0f2fd85d905ea78872669b432"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a37ca9ee0f2fd85d905ea78872669b432">&#9670;&nbsp;</a></span>reconstruction_sync_svd()</h2>
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-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_sync_svd </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize svd. </p>
-<p>Syncs the svd information to the child processes so these processes can sample parameter space for the step sizes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI recon_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a28543db9f9e3a81655f836fd230086c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a28543db9f9e3a81655f836fd230086c9">&#9670;&nbsp;</a></span>reconstruction_try_step()</h2>
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-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">logical function reconstruction::reconstruction_try_step </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>derived_params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>locks</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structguassian__process_1_1gaussp__class__pointer.html">gaussp_class_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>gaussp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(inout)&#160;</td>
-          <td class="paramname"><em>max_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Try step size. </p>
-<p>Sample reconstruction by trying to take a specified step size.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of <a class="el" href="namespacesignal.html">signal</a> objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">locks</td><td>Array of lock objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">params</td><td>Array of parameter objects. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">eq_steps</td><td>Number of steps for the equilibrium to take. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">max_step</td><td>Upper limit of the step size to attemp. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the child jacobian processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">param_value</td><td>Parameter corresponding to the smallest g^2 value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The lowest q^2 value. </dd></dl>
-
-</div>
-</div>
-<a id="a304df94be496fd98208fd6572ea3c513"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a304df94be496fd98208fd6572ea3c513">&#9670;&nbsp;</a></span>reconstruction_write()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_write </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out a reconstruction. </p>
-<p>Write out the final information about a reconstruction. This writes out a table of the g^2, expected g^2, number of sigular values used and the normalized step size used.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write final result to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a85ec5fed3e79ce85950af391a015303d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85ec5fed3e79ce85950af391a015303d">&#9670;&nbsp;</a></span>reconstruction_write_step1()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_write_step1 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>step_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out a reconstruction step attempt. </p>
-<p>Write out information about a reconstruction step. This writes the number of singular values use, the step type, the normalized step size and the expected g^2.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">step_type</td><td>The step type used. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write final result to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a298d4515dba754c1cfa422a67c4a6e50"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a298d4515dba754c1cfa422a67c4a6e50">&#9670;&nbsp;</a></span>reconstruction_write_step2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine reconstruction::reconstruction_write_step2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out a final reconstruction step. </p>
-<p>Write out information about a reconstruction step. This writes the number of singular values use, the step type, the normalized step size and the expected g^2.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output file to write final result to. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<div class="title">restart_mod Module Reference</div>  </div>
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-
-<p>Contains routines for writting the restart file.  
-<a href="namespacerestart__mod.html#details">More...</a></p>
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-<tr class="memitem:a34f956ea16409ac910dfe87512777129"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a34f956ea16409ac910dfe87512777129">restart_read</a> (restart_ext, wout_file, mpolin, ntorin, nfpi</td></tr>
-<tr class="memdesc:a34f956ea16409ac910dfe87512777129"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reads the restart file.  <a href="namespacerestart__mod.html#a34f956ea16409ac910dfe87512777129">More...</a><br /></td></tr>
-<tr class="separator:a34f956ea16409ac910dfe87512777129"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec29a5ee88a04205090d268fc7cca0d6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aec29a5ee88a04205090d268fc7cca0d6">restart_write</a> (restart_ext, wout_file)</td></tr>
-<tr class="memdesc:aec29a5ee88a04205090d268fc7cca0d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the restart file.  <a href="namespacerestart__mod.html#aec29a5ee88a04205090d268fc7cca0d6">More...</a><br /></td></tr>
-<tr class="separator:aec29a5ee88a04205090d268fc7cca0d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a4fc9f56a2d4a8f7a7ef862251ccd1554">interpit</a> (aold, anew, ns_old, ns_new, mpol_old, mpol_new, ntor_old, ntor_new, nfp_old, nfp_new, tor_modes_old, tor_modes_new, lhalf)</td></tr>
-<tr class="memdesc:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate fourier quantites from the restart file.  <a href="namespacerestart__mod.html#a4fc9f56a2d4a8f7a7ef862251ccd1554">More...</a><br /></td></tr>
-<tr class="separator:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab6c0b33cf218694723a8c8a97458b37c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab6c0b33cf218694723a8c8a97458b37c">interpit_1d</a> (aold, anew, ns_old, ns_new, lhalf, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:ab6c0b33cf218694723a8c8a97458b37c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate radial quantites from the restart file.  <a href="namespacerestart__mod.html#ab6c0b33cf218694723a8c8a97458b37c">More...</a><br /></td></tr>
-<tr class="separator:ab6c0b33cf218694723a8c8a97458b37c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0651fbc27038ba424694c72a11c12210"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a0651fbc27038ba424694c72a11c12210">restart_normalize</a> (xmn, factor)</td></tr>
-<tr class="memdesc:a0651fbc27038ba424694c72a11c12210"><td class="mdescLeft">&#160;</td><td class="mdescRight">Denormalize a quantity so the value written to the restart file can be summed directly.  <a href="namespacerestart__mod.html#a0651fbc27038ba424694c72a11c12210">More...</a><br /></td></tr>
-<tr class="separator:a0651fbc27038ba424694c72a11c12210"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acecd3079289cc38e4b4ab34c59f6eddf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#acecd3079289cc38e4b4ab34c59f6eddf">restart_denormalize</a> (xmn, factor)</td></tr>
-<tr class="memdesc:acecd3079289cc38e4b4ab34c59f6eddf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Denormalize a quantity so the value written to the restart file can be summed directly.  <a href="namespacerestart__mod.html#acecd3079289cc38e4b4ab34c59f6eddf">More...</a><br /></td></tr>
-<tr class="separator:acecd3079289cc38e4b4ab34c59f6eddf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a08081680dba11808460eace49ccf7b6a"><td class="memItemLeft" align="right" valign="top"><a id="a08081680dba11808460eace49ccf7b6a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a08081680dba11808460eace49ccf7b6a">restart_version</a> = 0</td></tr>
-<tr class="memdesc:a08081680dba11808460eace49ccf7b6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version number. <br /></td></tr>
-<tr class="separator:a08081680dba11808460eace49ccf7b6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa95c0985ae71d66bc4ae3e1933949bc"><td class="memItemLeft" align="right" valign="top"><a id="afa95c0985ae71d66bc4ae3e1933949bc"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#afa95c0985ae71d66bc4ae3e1933949bc">restart_lasym</a> = 31</td></tr>
-<tr class="memdesc:afa95c0985ae71d66bc4ae3e1933949bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the lasym flag. <br /></td></tr>
-<tr class="separator:afa95c0985ae71d66bc4ae3e1933949bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e458e8ae5a115086ee07111bab513a3"><td class="memItemLeft" align="right" valign="top"><a id="a7e458e8ae5a115086ee07111bab513a3"></a>
-character(len= *), dimension(1), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a7e458e8ae5a115086ee07111bab513a3">radial_dim</a> = (/ 'radius' /)</td></tr>
-<tr class="memdesc:a7e458e8ae5a115086ee07111bab513a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial Dimension names. <br /></td></tr>
-<tr class="separator:a7e458e8ae5a115086ee07111bab513a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28b2ca053fd487156841d1e4292cc9c5"><td class="memItemLeft" align="right" valign="top"><a id="a28b2ca053fd487156841d1e4292cc9c5"></a>
-character(len= *), dimension(3), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a28b2ca053fd487156841d1e4292cc9c5">restart_dims</a> = (/ 'm-mode', 'n-mode', <a class="el" href="namespacerestart__mod.html#a7e458e8ae5a115086ee07111bab513a3">radial_dim</a>(1) /)</td></tr>
-<tr class="memdesc:a28b2ca053fd487156841d1e4292cc9c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier Dimension names. <br /></td></tr>
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-<tr class="memitem:af1522f71f25dd55499b88dfe7658c974"><td class="memItemLeft" align="right" valign="top"><a id="af1522f71f25dd55499b88dfe7658c974"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#af1522f71f25dd55499b88dfe7658c974">vn_nsin</a> = 'nrad'</td></tr>
-<tr class="memdesc:af1522f71f25dd55499b88dfe7658c974"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of radial points. <br /></td></tr>
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-<tr class="memitem:a1fae051325f7b6aadce1fe56c031f860"><td class="memItemLeft" align="right" valign="top"><a id="a1fae051325f7b6aadce1fe56c031f860"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a1fae051325f7b6aadce1fe56c031f860">vn_mpolin</a> = 'mpol'</td></tr>
-<tr class="memdesc:a1fae051325f7b6aadce1fe56c031f860"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of poloidal modes. <br /></td></tr>
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-<tr class="memitem:aed51bc3c7dc09d1c572d17fdcd8821e4"><td class="memItemLeft" align="right" valign="top"><a id="aed51bc3c7dc09d1c572d17fdcd8821e4"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aed51bc3c7dc09d1c572d17fdcd8821e4">vn_ntorin</a> = 'ntor'</td></tr>
-<tr class="memdesc:aed51bc3c7dc09d1c572d17fdcd8821e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of toroidal modes. <br /></td></tr>
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-<tr class="memitem:ae8e866611996006e9489bad12af8ad1c"><td class="memItemLeft" align="right" valign="top"><a id="ae8e866611996006e9489bad12af8ad1c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ae8e866611996006e9489bad12af8ad1c">vn_nfpin</a> = 'nfp'</td></tr>
-<tr class="memdesc:ae8e866611996006e9489bad12af8ad1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of field periods. <br /></td></tr>
-<tr class="separator:ae8e866611996006e9489bad12af8ad1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af98cc2e59f0dfde95f34cbd6fcee7f13"><td class="memItemLeft" align="right" valign="top"><a id="af98cc2e59f0dfde95f34cbd6fcee7f13"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#af98cc2e59f0dfde95f34cbd6fcee7f13">vn_wout</a> = 'wout_file'</td></tr>
-<tr class="memdesc:af98cc2e59f0dfde95f34cbd6fcee7f13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of wout file modes. <br /></td></tr>
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-<tr class="memitem:aaf00308f8ce571403fd618a50532588d"><td class="memItemLeft" align="right" valign="top"><a id="aaf00308f8ce571403fd618a50532588d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aaf00308f8ce571403fd618a50532588d">vn_flags</a> = 'state_flags'</td></tr>
-<tr class="memdesc:aaf00308f8ce571403fd618a50532588d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of state flags modes. <br /></td></tr>
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-<tr class="memitem:ac704019af262476e08dea0d90739d2b5"><td class="memItemLeft" align="right" valign="top"><a id="ac704019af262476e08dea0d90739d2b5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ac704019af262476e08dea0d90739d2b5">vn_tor_modes</a> = 'tor_modes'</td></tr>
-<tr class="memdesc:ac704019af262476e08dea0d90739d2b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file toroidal modes array. <br /></td></tr>
-<tr class="separator:ac704019af262476e08dea0d90739d2b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8dabe58f043ba85ceb69a36b0807182d"><td class="memItemLeft" align="right" valign="top"><a id="a8dabe58f043ba85ceb69a36b0807182d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a8dabe58f043ba85ceb69a36b0807182d">vn_jbsupss</a> = 'JBsupssh_m_n_r_'</td></tr>
-<tr class="memdesc:a8dabe58f043ba85ceb69a36b0807182d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupss. <br /></td></tr>
-<tr class="separator:a8dabe58f043ba85ceb69a36b0807182d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1b5936c09a0b6b0e676667bee9066594"><td class="memItemLeft" align="right" valign="top"><a id="a1b5936c09a0b6b0e676667bee9066594"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a1b5936c09a0b6b0e676667bee9066594">vn_jbsupuc</a> = 'JBsupuch_m_n_r_'</td></tr>
-<tr class="memdesc:a1b5936c09a0b6b0e676667bee9066594"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupuc. <br /></td></tr>
-<tr class="separator:a1b5936c09a0b6b0e676667bee9066594"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b75f6044a7205024884ae8512a9f507"><td class="memItemLeft" align="right" valign="top"><a id="a3b75f6044a7205024884ae8512a9f507"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a3b75f6044a7205024884ae8512a9f507">vn_jbsupvc</a> = 'JBsupvch_m_n_r_'</td></tr>
-<tr class="memdesc:a3b75f6044a7205024884ae8512a9f507"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupvc. <br /></td></tr>
-<tr class="separator:a3b75f6044a7205024884ae8512a9f507"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="memItemLeft" align="right" valign="top"><a id="a6e74e96bdb92be900d8d3d7528af0dc6"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a6e74e96bdb92be900d8d3d7528af0dc6">vn_jbsupsc</a> = 'JBsupsch_m_n_r_'</td></tr>
-<tr class="memdesc:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupsc. <br /></td></tr>
-<tr class="separator:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="memItemLeft" align="right" valign="top"><a id="a2ae1cf9e4dcce7158729039c1a77cb8b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a2ae1cf9e4dcce7158729039c1a77cb8b">vn_jbsupus</a> = 'JBsupush_m_n_r_'</td></tr>
-<tr class="memdesc:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupus. <br /></td></tr>
-<tr class="separator:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="memItemLeft" align="right" valign="top"><a id="ab89517f93a0ae13e5fa9d8e21afbe076"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab89517f93a0ae13e5fa9d8e21afbe076">vn_jbsupvs</a> = 'JBsupvsh_m_n_r_'</td></tr>
-<tr class="memdesc:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupus. <br /></td></tr>
-<tr class="separator:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a001d7e0137df07e4a922aa6a766ffe7c"><td class="memItemLeft" align="right" valign="top"><a id="a001d7e0137df07e4a922aa6a766ffe7c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a001d7e0137df07e4a922aa6a766ffe7c">vn_jpresc</a> = 'jpresch_m_n_r_'</td></tr>
-<tr class="memdesc:a001d7e0137df07e4a922aa6a766ffe7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jpresc. <br /></td></tr>
-<tr class="separator:a001d7e0137df07e4a922aa6a766ffe7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64102fe7bf802f4509f1f751f9e04df4"><td class="memItemLeft" align="right" valign="top"><a id="a64102fe7bf802f4509f1f751f9e04df4"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a64102fe7bf802f4509f1f751f9e04df4">vn_jpress</a> = 'jpressh_m_n_r_'</td></tr>
-<tr class="memdesc:a64102fe7bf802f4509f1f751f9e04df4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jpress. <br /></td></tr>
-<tr class="separator:a64102fe7bf802f4509f1f751f9e04df4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8ede25cf3a8e129d2a253aefe25059c5"><td class="memItemLeft" align="right" valign="top"><a id="a8ede25cf3a8e129d2a253aefe25059c5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a8ede25cf3a8e129d2a253aefe25059c5">vn_rmnc</a> = 'rmnc_m_n_r_'</td></tr>
-<tr class="memdesc:a8ede25cf3a8e129d2a253aefe25059c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file rmnc. <br /></td></tr>
-<tr class="separator:a8ede25cf3a8e129d2a253aefe25059c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab100a17b4dca273d5e88840b9279608f"><td class="memItemLeft" align="right" valign="top"><a id="ab100a17b4dca273d5e88840b9279608f"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab100a17b4dca273d5e88840b9279608f">vn_rmns</a> = 'rmns_m_n_r_'</td></tr>
-<tr class="memdesc:ab100a17b4dca273d5e88840b9279608f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file rmns. <br /></td></tr>
-<tr class="separator:ab100a17b4dca273d5e88840b9279608f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abf2e51d7dee49cef6fcca1c779449add"><td class="memItemLeft" align="right" valign="top"><a id="abf2e51d7dee49cef6fcca1c779449add"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#abf2e51d7dee49cef6fcca1c779449add">vn_zmnc</a> = 'zmnc_m_n_r_'</td></tr>
-<tr class="memdesc:abf2e51d7dee49cef6fcca1c779449add"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file zmnc. <br /></td></tr>
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-<tr class="memitem:a6e4b6e126838dde0fb014793d1a04a08"><td class="memItemLeft" align="right" valign="top"><a id="a6e4b6e126838dde0fb014793d1a04a08"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a6e4b6e126838dde0fb014793d1a04a08">vn_zmns</a> = 'zmns_m_n_r_'</td></tr>
-<tr class="memdesc:a6e4b6e126838dde0fb014793d1a04a08"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file zmns. <br /></td></tr>
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-<tr class="memitem:afe3a35dec4b1de7fab9edc4ed41519dd"><td class="memItemLeft" align="right" valign="top"><a id="afe3a35dec4b1de7fab9edc4ed41519dd"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#afe3a35dec4b1de7fab9edc4ed41519dd">vn_chipf</a> = 'chipf(r)'</td></tr>
-<tr class="memdesc:afe3a35dec4b1de7fab9edc4ed41519dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file chipf. <br /></td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ad58c4f56728918de496667e053f98bf0">vn_fsubvmns</a> = 'fsubvmnsf_m_n_r_'</td></tr>
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-<tr class="memitem:ab78e43fc2ed1358f69e048ac899cea50"><td class="memItemLeft" align="right" valign="top"><a id="ab78e43fc2ed1358f69e048ac899cea50"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab78e43fc2ed1358f69e048ac899cea50">vn_fsubvmnc</a> = 'fsubvmncf_m_n_r_'</td></tr>
-<tr class="memdesc:ab78e43fc2ed1358f69e048ac899cea50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file fsubvmnc. <br /></td></tr>
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-<tr class="memitem:a6fcb0133cd9e3f82a90b3f070cf430b9"><td class="memItemLeft" align="right" valign="top"><a id="a6fcb0133cd9e3f82a90b3f070cf430b9"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a6fcb0133cd9e3f82a90b3f070cf430b9">vn_lmns</a> = 'lmns_m_n_r_'</td></tr>
-<tr class="memdesc:a6fcb0133cd9e3f82a90b3f070cf430b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file lmns. <br /></td></tr>
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-<tr class="memitem:a287a24746f5eb4bb30894c02eb567e75"><td class="memItemLeft" align="right" valign="top"><a id="a287a24746f5eb4bb30894c02eb567e75"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a287a24746f5eb4bb30894c02eb567e75">vn_lmnc</a> = 'lmnc_m_n_r_'</td></tr>
-<tr class="memdesc:a287a24746f5eb4bb30894c02eb567e75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file lmnc. <br /></td></tr>
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-<tr class="memitem:a5323c0509e0f4aaf847c89e7076897b2"><td class="memItemLeft" align="right" valign="top"><a id="a5323c0509e0f4aaf847c89e7076897b2"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a5323c0509e0f4aaf847c89e7076897b2">vn_p_factor</a> = 'p_factor'</td></tr>
-<tr class="memdesc:a5323c0509e0f4aaf847c89e7076897b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file p_factor. <br /></td></tr>
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-<tr class="memitem:a0eaefbfb80ac7b45781e6607d0925edc"><td class="memItemLeft" align="right" valign="top"><a id="a0eaefbfb80ac7b45781e6607d0925edc"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a0eaefbfb80ac7b45781e6607d0925edc">vn_b_factor</a> = 'b_factor'</td></tr>
-<tr class="memdesc:a0eaefbfb80ac7b45781e6607d0925edc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file b_factor. <br /></td></tr>
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-<tr class="memitem:afd2ed069cf8731eb379df78b1b085548"><td class="memItemLeft" align="right" valign="top"><a id="afd2ed069cf8731eb379df78b1b085548"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#afd2ed069cf8731eb379df78b1b085548">vn_wb</a> = 'wb'</td></tr>
-<tr class="memdesc:afd2ed069cf8731eb379df78b1b085548"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file wb. <br /></td></tr>
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-<tr class="memitem:a1ba6dace1c8d1a2cd318917bcdea24d5"><td class="memItemLeft" align="right" valign="top"><a id="a1ba6dace1c8d1a2cd318917bcdea24d5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a1ba6dace1c8d1a2cd318917bcdea24d5">vn_wp</a> = 'wp'</td></tr>
-<tr class="memdesc:a1ba6dace1c8d1a2cd318917bcdea24d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file wb. <br /></td></tr>
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-<tr class="memitem:a9b75642da9bf5f8acb084d7cb10016f3"><td class="memItemLeft" align="right" valign="top"><a id="a9b75642da9bf5f8acb084d7cb10016f3"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a9b75642da9bf5f8acb084d7cb10016f3">vn_rmajor</a> = 'rmajor'</td></tr>
-<tr class="memdesc:a9b75642da9bf5f8acb084d7cb10016f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file rmajor. <br /></td></tr>
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-<tr class="memitem:adde30c44ba3ec29835de168ea5c728e3"><td class="memItemLeft" align="right" valign="top"><a id="adde30c44ba3ec29835de168ea5c728e3"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#adde30c44ba3ec29835de168ea5c728e3">vn_curtor</a> = 'curtor'</td></tr>
-<tr class="memdesc:adde30c44ba3ec29835de168ea5c728e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file total toroidal current. <br /></td></tr>
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-<tr class="memitem:a64ebf5584c173c634ee5c7e969408fa2"><td class="memItemLeft" align="right" valign="top"><a id="a64ebf5584c173c634ee5c7e969408fa2"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a64ebf5584c173c634ee5c7e969408fa2">vn_p_max</a> = 'p_max'</td></tr>
-<tr class="memdesc:a64ebf5584c173c634ee5c7e969408fa2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file p_max. <br /></td></tr>
-<tr class="separator:a64ebf5584c173c634ee5c7e969408fa2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a281d05b47f880910d8e75cf24b9f05d5"><td class="memItemLeft" align="right" valign="top"><a id="a281d05b47f880910d8e75cf24b9f05d5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a281d05b47f880910d8e75cf24b9f05d5">vn_p_min</a> = 'p_min'</td></tr>
-<tr class="memdesc:a281d05b47f880910d8e75cf24b9f05d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file p_min. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains routines for writting the restart file. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a4fc9f56a2d4a8f7a7ef862251ccd1554"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4fc9f56a2d4a8f7a7ef862251ccd1554">&#9670;&nbsp;</a></span>interpit()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine restart_mod::interpit </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>aold</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(out)&#160;</td>
-          <td class="paramname"><em>anew</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ns_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ns_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mpol_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mpol_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntor_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntor_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nfp_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nfp_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>tor_modes_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>tor_modes_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>lhalf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate fourier quantites from the restart file. </p>
-<p>Restart files can change the number of surfaces and modes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">aold</td><td>Value from the restart file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">anew</td><td>New interpolated value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ns_old</td><td>Radial grid size in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ns_new</td><td>New radial grid size. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol_old</td><td>Number of poloidal modes in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol_new</td><td>New number of poloidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntor_old</td><td>Number of totoidal modes in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntor_new</td><td>New number of totoidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfp_old</td><td>Number of field periods in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfp_new</td><td>New number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modes_old</td><td>Toroidal modes in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modes_new</td><td>New toroidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lhalf</td><td>Grid type. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab6c0b33cf218694723a8c8a97458b37c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab6c0b33cf218694723a8c8a97458b37c">&#9670;&nbsp;</a></span>interpit_1d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine restart_mod::interpit_1d </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>aold</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>anew</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ns_old</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ns_new</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>lhalf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Interpolate radial quantites from the restart file. </p>
-<p>Restart files can change the number of surfaces.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">aold</td><td>Value from the restart file. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">anew</td><td>New interpolated value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ns_old</td><td>Radial grid size in the restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ns_new</td><td>New radial grid size. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acecd3079289cc38e4b4ab34c59f6eddf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acecd3079289cc38e4b4ab34c59f6eddf">&#9670;&nbsp;</a></span>restart_denormalize()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine restart_mod::restart_denormalize </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp)&#160;</td>
-          <td class="paramname"><em>factor</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Denormalize a quantity so the value written to the restart file can be summed directly. </p>
-<p>This removes the orthonorm and energy scale factors for a fourier quantity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xmn</td><td>Fourier quantity to denormalize. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">factor</td><td>Energy scale factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0651fbc27038ba424694c72a11c12210"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0651fbc27038ba424694c72a11c12210">&#9670;&nbsp;</a></span>restart_normalize()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine restart_mod::restart_normalize </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:)&#160;</td>
-          <td class="paramname"><em>xmn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp)&#160;</td>
-          <td class="paramname"><em>factor</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Denormalize a quantity so the value written to the restart file can be summed directly. </p>
-<p>This removes the orthonorm and energy scale factors for a fourier quantity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xmn</td><td>Fourier quantity to denormalize. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">factor</td><td>Energy scale factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a34f956ea16409ac910dfe87512777129"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a34f956ea16409ac910dfe87512777129">&#9670;&nbsp;</a></span>restart_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function restart_mod::restart_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>restart_ext</em>, </td>
-        </tr>
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-<p>Reads the restart file. </p>
-<p>Reads the restart information and initalizes SIESTA quantities.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_ext</td><td>Restart extention. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">wout_file</td><td>Name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpolin</td><td>Namelist number of polodal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntorin</td><td>Namelist number of toroidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfpin</td><td>Namelist number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsin</td><td>Namelist number of radial grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modesin</td><td>Namelist torodial modes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Preconditioner control flag. </dd></dl>
-
-</div>
-</div>
-<a id="aec29a5ee88a04205090d268fc7cca0d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aec29a5ee88a04205090d268fc7cca0d6">&#9670;&nbsp;</a></span>restart_write()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine restart_mod::restart_write </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>restart_ext</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the restart file. </p>
-<p>Writes the restart information.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_ext</td><td>Restart file extension. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>Name of the wout file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<title>Stellarator-Tools: Namespace List</title>
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-<script type="text/javascript" src="jquery.js"></script>
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-   <div id="projectname">Stellarator-Tools
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-  <div class="headertitle">
-<div class="title">Namespace List</div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="textblock">Here is a list of all documented namespaces with brief descriptions:</div><div class="directory">
-<div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span>]</div><table class="directory">
-<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>ajax_mod</b></td><td class="desc"></td></tr>
-<tr id="row_1_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>angle_constraints</b></td><td class="desc"></td></tr>
-<tr id="row_2_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_2_" class="arrow" onclick="toggleFolder('2_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>assert_mod</b></td><td class="desc"></td></tr>
-<tr id="row_2_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceassert__mod_1_1assert.html" target="_self">assert</a></td><td class="desc"></td></tr>
-<tr id="row_3_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>bcoils_mod</b></td><td class="desc"></td></tr>
-<tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>biotsavart</b></td><td class="desc"></td></tr>
-<tr id="row_5_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_5_" class="arrow" onclick="toggleFolder('5_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebivariate.html" target="_self">bivariate</a></td><td class="desc">This modules contains routines for interpolating points inside a grid. This was originally written by S. P. Hirshman. It has been modified for thread safety converting it to be object oriented by M. Cianciosa </td></tr>
-<tr id="row_5_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbivariate_1_1bivariate__class.html" target="_self">bivariate_class</a></td><td class="desc">An object containing persistent data for the bivariate interpolation </td></tr>
-<tr id="row_6_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_6_" class="arrow" onclick="toggleFolder('6_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceblocktridiagonalsolver.html" target="_self">blocktridiagonalsolver</a></td><td class="desc">Solver for block tri-diagonal matrices. [Kalyan S. Perumalla, ORNL, 2009-2011] </td></tr>
-<tr id="row_6_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1levelelement.html" target="_self">levelelement</a></td><td class="desc">Data associated with each row at each level </td></tr>
-<tr id="row_6_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1solutionelement.html" target="_self">solutionelement</a></td><td class="desc">Solution of selected rows of interest to this rank </td></tr>
-<tr id="row_6_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1blacsprocessgrid.html" target="_self">blacsprocessgrid</a></td><td class="desc">BLACS/PBLAS process grid information </td></tr>
-<tr id="row_6_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1blacsparameters.html" target="_self">blacsparameters</a></td><td class="desc">BLACS/PBLAS information </td></tr>
-<tr id="row_6_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1mastertoslavemapping.html" target="_self">mastertoslavemapping</a></td><td class="desc">Master-to-slave mapping </td></tr>
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-<tr id="row_6_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1pblasstats.html" target="_self">pblasstats</a></td><td class="desc"></td></tr>
-<tr id="row_6_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver_1_1pblastemparray.html" target="_self">pblastemparray</a></td><td class="desc"></td></tr>
-<tr id="row_7_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_7_" class="arrow" onclick="toggleFolder('7_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>blocktridiagonalsolver_bst</b></td><td class="desc"></td></tr>
-<tr id="row_7_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1levelelement.html" target="_self">levelelement</a></td><td class="desc">Data associated with each row at each level </td></tr>
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-<tr id="row_7_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1blacsprocessgrid.html" target="_self">blacsprocessgrid</a></td><td class="desc">BLACS/PBLAS process grid information </td></tr>
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-<tr id="row_7_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1mastertoslavemapping.html" target="_self">mastertoslavemapping</a></td><td class="desc">Master-to-slave mapping </td></tr>
-<tr id="row_7_5_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1pblaslevelparameters.html" target="_self">pblaslevelparameters</a></td><td class="desc">Level-specific PBLAS information </td></tr>
-<tr id="row_7_6_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1timecount.html" target="_self">timecount</a></td><td class="desc">Statistics (timing, etc.) </td></tr>
-<tr id="row_7_7_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1pblasstats.html" target="_self">pblasstats</a></td><td class="desc"></td></tr>
-<tr id="row_7_8_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structblocktridiagonalsolver__bst_1_1pblastemparray.html" target="_self">pblastemparray</a></td><td class="desc"></td></tr>
-<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceblocktridiagonalsolver__s.html" target="_self">blocktridiagonalsolver_s</a></td><td class="desc">Module contains subroutines for solver for block tri-diagonal matrices </td></tr>
-<tr id="row_9_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_9_" class="arrow" onclick="toggleFolder('9_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__commandline__parser.html" target="_self">bmw_commandline_parser</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a> </td></tr>
-<tr id="row_9_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html" target="_self">bmw_commandline_parser_class</a></td><td class="desc">Base class containing a parsed bmw_commandline </td></tr>
-<tr id="row_10_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_10_" class="arrow" onclick="toggleFolder('10_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__context.html" target="_self">bmw_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>. This contains the state variables needed by BMW </td></tr>
-<tr id="row_10_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__context_1_1bmw__context__class.html" target="_self">bmw_context_class</a></td><td class="desc">Base class representing a bmw context. This contains all memory needed to operate bmw </td></tr>
-<tr id="row_11_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_11_" class="arrow" onclick="toggleFolder('11_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__parallel__context.html" target="_self">bmw_parallel_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>. This contains the state variables needed by BMW for parallel computation </td></tr>
-<tr id="row_11_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html" target="_self">bmw_parallel_context_class</a></td><td class="desc">Base class representing a bmw parallel context. This contains all memory needed parameters needed to parallel processing </td></tr>
-<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__run.html" target="_self">bmw_run</a></td><td class="desc">BMW is a code for extending fields belond the VMEC domain in a manner that ensures divergence free fields. BMW does a Biot-Savart volume integration of of the equilibrium current density to obtain a continous vector potential every where on the mgrid grid </td></tr>
-<tr id="row_13_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacebmw__state__flags.html" target="_self">bmw_state_flags</a></td><td class="desc">Contains parameters defining the bit positions for flags that mark different options </td></tr>
-<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>bnorm_mod</b></td><td class="desc"></td></tr>
-<tr id="row_15_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>bootsj_input</b></td><td class="desc"></td></tr>
-<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>booz_params</b></td><td class="desc"></td></tr>
-<tr id="row_17_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>booz_persistent</b></td><td class="desc"></td></tr>
-<tr id="row_18_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_18_" class="arrow" onclick="toggleFolder('18_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>boundary_t</b></td><td class="desc"></td></tr>
-<tr id="row_18_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structboundary__t_1_1boundary__desc.html" target="_self">boundary_desc</a></td><td class="desc"></td></tr>
-<tr id="row_19_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>bsc_cdf</b></td><td class="desc"></td></tr>
-<tr id="row_20_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_20_" class="arrow" onclick="toggleFolder('20_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>bsc_t</b></td><td class="desc"></td></tr>
-<tr id="row_20_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__coil.html" target="_self">bsc_coil</a></td><td class="desc"></td></tr>
-<tr id="row_20_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__coilcoll.html" target="_self">bsc_coilcoll</a></td><td class="desc"></td></tr>
-<tr id="row_20_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbsc__t_1_1bsc__rs.html" target="_self">bsc_rs</a></td><td class="desc"></td></tr>
-<tr id="row_20_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_20_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__construct.html" target="_self">bsc_construct</a></td><td class="desc"></td></tr>
-<tr id="row_20_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__destroy.html" target="_self">bsc_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_20_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__rot__shift.html" target="_self">bsc_rot_shift</a></td><td class="desc"></td></tr>
-<tr id="row_20_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__a.html" target="_self">bsc_a</a></td><td class="desc"></td></tr>
-<tr id="row_20_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__b.html" target="_self">bsc_b</a></td><td class="desc"></td></tr>
-<tr id="row_20_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacebsc__t_1_1bsc__fluxba.html" target="_self">bsc_fluxba</a></td><td class="desc"></td></tr>
-<tr id="row_21_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_correlation_matrix</b></td><td class="desc"></td></tr>
-<tr id="row_22_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_file</b></td><td class="desc"></td></tr>
-<tr id="row_23_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_jac_value</b></td><td class="desc"></td></tr>
-<tr id="row_24_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_jacobian_iter</b></td><td class="desc"></td></tr>
-<tr id="row_25_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_param_constraint_types</b></td><td class="desc"></td></tr>
-<tr id="row_26_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_param_value</b></td><td class="desc"></td></tr>
-<tr id="row_27_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_sem_total</b></td><td class="desc"></td></tr>
-<tr id="row_28_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_signal_value</b></td><td class="desc"></td></tr>
-<tr id="row_29_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>check_signal_value2</b></td><td class="desc"></td></tr>
-<tr id="row_30_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>coilsnamin</b></td><td class="desc"></td></tr>
-<tr id="row_31_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_31_" class="arrow" onclick="toggleFolder('31_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecombination.html" target="_self">combination</a></td><td class="desc">Defines the base class of the type <a class="el" href="structcombination_1_1combination__class.html">combination_class</a> </td></tr>
-<tr id="row_31_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcombination_1_1combination__class.html" target="_self">combination_class</a></td><td class="desc">Base class representing a combination signal </td></tr>
-<tr id="row_32_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecommandline__parser.html" target="_self">commandline_parser</a></td><td class="desc">Defines the base class of the type <a class="el" href="structcommandline__parser_1_1commandline__parser__class.html">commandline_parser_class</a> </td></tr>
-<tr id="row_33_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_33_" class="arrow" onclick="toggleFolder('33_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecompression.html" target="_self">compression</a></td><td class="desc">Defines the base class of the type <a class="el" href="structcompression_1_1compression__class.html">compression_class</a>. This class contains the code and buffers to hold compressed and uncompressed data. 2D matrix data is compressed using a singular value decomposition. See del-Castillo-Negrete et. al. doi:10.1016/j.jcp.2006.07.022 </td></tr>
-<tr id="row_33_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcompression_1_1compression__class.html" target="_self">compression_class</a></td><td class="desc">Base class containing buffers for compressed and uncompressed data </td></tr>
-<tr id="row_33_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcompression_1_1compression__pointer.html" target="_self">compression_pointer</a></td><td class="desc">Pointer to a compression object. Used for creating arrays of compression pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_33_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacecompression_1_1compression__construct.html" target="_self">compression_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structcompression_1_1compression__class.html">compression_class</a> types using <a class="el" href="interfacecompression_1_1compression__construct.html#a761cfee279aa8c0a332f3e37788c89dd">compression_construct_new</a> or <a class="el" href="interfacecompression_1_1compression__construct.html#a58461e3b568b600b5caa425b944acf2a">compression_construct_netcdf</a> </td></tr>
-<tr id="row_34_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>control_mod</b></td><td class="desc"></td></tr>
-<tr id="row_35_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacecoordinate__utilities.html" target="_self">coordinate_utilities</a></td><td class="desc">Module is part of the LIBSTELL. This modules containes code to convert from different coordinate systems </td></tr>
-<tr id="row_36_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>csplinx</b></td><td class="desc"></td></tr>
-<tr id="row_37_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_37_" class="arrow" onclick="toggleFolder('37_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>cyl_flux</b></td><td class="desc"></td></tr>
-<tr id="row_37_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structcyl__flux_1_1cyl__flux__context.html" target="_self">cyl_flux_context</a></td><td class="desc">Structure to house needed internal state for cyl2flux </td></tr>
-<tr id="row_38_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacedata__parameters.html" target="_self">data_parameters</a></td><td class="desc">This modules contains parameters used by equilibrium models </td></tr>
-<tr id="row_39_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>date_and_computer</b></td><td class="desc"></td></tr>
-<tr id="row_40_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>de_mod</b></td><td class="desc"></td></tr>
-<tr id="row_41_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>descriptor_mod</b></td><td class="desc"></td></tr>
-<tr id="row_42_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_42_" class="arrow" onclick="toggleFolder('42_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>diagnostic_cdf</b></td><td class="desc"></td></tr>
-<tr id="row_42_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__define.html" target="_self">diagnostic_cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_42_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__write.html" target="_self">diagnostic_cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_42_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__cdf_1_1diagnostic__cdf__read.html" target="_self">diagnostic_cdf_read</a></td><td class="desc"></td></tr>
-<tr id="row_43_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_43_" class="arrow" onclick="toggleFolder('43_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacediagnostic__dot.html" target="_self">diagnostic_dot</a></td><td class="desc">Module for opening and reading a diagnostic dot file. The file format for these files are documented in <a class="el" href="diagnostic_dot_sec.html">Magnetic Diagnostic Dot File</a> </td></tr>
-<tr id="row_43_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html" target="_self">diagnostic_dot_coil</a></td><td class="desc">A single coil. A coil set is structured as a singly linked list </td></tr>
-<tr id="row_44_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_44_" class="arrow" onclick="toggleFolder('44_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>diagnostic_t</b></td><td class="desc"></td></tr>
-<tr id="row_44_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structdiagnostic__t_1_1diagnostic__desc.html" target="_self">diagnostic_desc</a></td><td class="desc"></td></tr>
-<tr id="row_44_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_44_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__construct.html" target="_self">diagnostic_construct</a></td><td class="desc"></td></tr>
-<tr id="row_44_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__destroy.html" target="_self">diagnostic_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_44_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacediagnostic__t_1_1diagnostic__write.html" target="_self">diagnostic_write</a></td><td class="desc"></td></tr>
-<tr id="row_45_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>dump_output</b></td><td class="desc"></td></tr>
-<tr id="row_46_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_46_" class="arrow" onclick="toggleFolder('46_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceece.html" target="_self">ece</a></td><td class="desc">Defines the base class of the type <a class="el" href="structece_1_1ece__class.html">ece_class</a> </td></tr>
-<tr id="row_46_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structece_1_1ece__class.html" target="_self">ece_class</a></td><td class="desc">Base class representing an ECE signal </td></tr>
-<tr id="row_46_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structece_1_1ece__context.html" target="_self">ece_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_47_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceece__dot.html" target="_self">ece_dot</a></td><td class="desc">Module for opening and reading a 'ece.' file. The file format for these files are documented in <a class="el" href="ece_dot_sec.html">ECE Diagnostic Dot File</a> </td></tr>
-<tr id="row_48_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_48_" class="arrow" onclick="toggleFolder('48_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceemission.html" target="_self">emission</a></td><td class="desc">Defines the base class of the type <a class="el" href="structemission_1_1emission__class.html">emission_class</a>. This contains the X-Ray emission as function of temperature and energy. This needs to still be multiplied by ne^2 </td></tr>
-<tr id="row_48_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structemission_1_1emission__class.html" target="_self">emission_class</a></td><td class="desc">Base class representing the soft x-ray emission function </td></tr>
-<tr id="row_48_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceemission_1_1emission__construct.html" target="_self">emission_construct</a></td><td class="desc"></td></tr>
-<tr id="row_49_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_49_" class="arrow" onclick="toggleFolder('49_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceequilibrium.html" target="_self">equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a>. Equilibrium is an abstract interface to the equilibrium solver. Every method is meant to be overwritten by a subclass method with a few exceptions. For instance a vacuum equilibrium could use the default return values for equilibrium_get_ne, equilibrium_get_te and equilibrium_get_sxrem methods </td></tr>
-<tr id="row_49_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structequilibrium_1_1equilibrium__class.html" target="_self">equilibrium_class</a></td><td class="desc">Base class representing a equilibrium </td></tr>
-<tr id="row_49_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceequilibrium_1_1equilibrium__construct.html" target="_self">equilibrium_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a> types using equilibrium_construct_vmec, equilibrium_construct_vacuum or equilibrium_construct_siesta </td></tr>
-<tr id="row_50_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_50_" class="arrow" onclick="toggleFolder('50_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceextcurz.html" target="_self">extcurz</a></td><td class="desc">Represents a signal obtained by integrating around the magnetic field to get the current enclosed in the Z direction using Ampere's Law. Defines the base class of the type <a class="el" href="structextcurz_1_1extcurz__class.html">extcurz_class</a> </td></tr>
-<tr id="row_50_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structextcurz_1_1extcurz__class.html" target="_self">extcurz_class</a></td><td class="desc">Base class representing a external Z currents enclosed by an inegration loop </td></tr>
-<tr id="row_51_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_51_" class="arrow" onclick="toggleFolder('51_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>extcurz_t</b></td><td class="desc"></td></tr>
-<tr id="row_51_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structextcurz__t_1_1extcurz__desc.html" target="_self">extcurz_desc</a></td><td class="desc"></td></tr>
-<tr id="row_52_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_52_" class="arrow" onclick="toggleFolder('52_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_attrib</b></td><td class="desc"></td></tr>
-<tr id="row_52_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__attrib_1_1cdf__setatt.html" target="_self">cdf_setatt</a></td><td class="desc"></td></tr>
-<tr id="row_52_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__attrib_1_1cdf__getatt.html" target="_self">cdf_getatt</a></td><td class="desc"></td></tr>
-<tr id="row_53_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_genget</b></td><td class="desc"></td></tr>
-<tr id="row_54_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_54_" class="arrow" onclick="toggleFolder('54_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_genput</b></td><td class="desc"></td></tr>
-<tr id="row_54_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdf__write.html" target="_self">cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_54_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdfputvar.html" target="_self">cdfputvar</a></td><td class="desc"></td></tr>
-<tr id="row_54_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__genput_1_1cdf__define.html" target="_self">cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_55_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_55_" class="arrow" onclick="toggleFolder('55_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_inqvar</b></td><td class="desc"></td></tr>
-<tr id="row_55_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezcdf__inqvar_1_1cdfinqvardim.html" target="_self">cdfinqvardim</a></td><td class="desc"></td></tr>
-<tr id="row_56_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_56_" class="arrow" onclick="toggleFolder('56_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezcdf_opncls</b></td><td class="desc"></td></tr>
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-<tr id="row_57_12_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__modulo.html" target="_self">ezspline_modulo</a></td><td class="desc"></td></tr>
-<tr id="row_57_13_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline_1_1ezspline__2netcdf.html" target="_self">ezspline_2netcdf</a></td><td class="desc"></td></tr>
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-<tr id="row_58_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline__obj_1_1ezspline__preinit.html" target="_self">ezspline_preinit</a></td><td class="desc"></td></tr>
-<tr id="row_58_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceezspline__obj_1_1ezspline__allocated.html" target="_self">ezspline_allocated</a></td><td class="desc"></td></tr>
-<tr id="row_59_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_59_" class="arrow" onclick="toggleFolder('59_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ezspline_type</b></td><td class="desc"></td></tr>
-<tr id="row_59_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structezspline__type_1_1ezspline3__r8.html" target="_self">ezspline3_r8</a></td><td class="desc"></td></tr>
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-<tr id="row_60_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacef1dim__mod.html" target="_self">f1dim_mod</a></td><td class="desc">Module containing Fletcher-Reeves (non-linear Conjugate Gradient) routines including linear search algorithm </td></tr>
-<tr id="row_61_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>fbal</b></td><td class="desc"></td></tr>
-<tr id="row_62_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>fdjac_mod</b></td><td class="desc"></td></tr>
-<tr id="row_63_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_63_" class="arrow" onclick="toggleFolder('63_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>fftpack</b></td><td class="desc"></td></tr>
-<tr id="row_63_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1cftfax.html" target="_self">cftfax</a></td><td class="desc"></td></tr>
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-<tr id="row_63_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1fftfax.html" target="_self">fftfax</a></td><td class="desc"></td></tr>
-<tr id="row_63_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefftpack_1_1fftrig.html" target="_self">fftrig</a></td><td class="desc"></td></tr>
-<tr id="row_64_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacefile__opts.html" target="_self">file_opts</a></td><td class="desc">Contains cross platform routines for manipulating files on the file system. Defines a functions to move, copy and delete a file that is cross platform. While, system contains a crossplatform way to call a command line commands, the command used will vary by platform </td></tr>
-<tr id="row_65_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_65_" class="arrow" onclick="toggleFolder('65_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacefourier.html" target="_self">fourier</a></td><td class="desc">Module contains subroutines for computing FFT on parallel radial intervals. Converts quantities between real and fourier space. Note fixarray must be called once before call any of the Fourier subroutines to calculate all necessary sine and cosine factors on a fixed mesh of collocation angles </td></tr>
-<tr id="row_65_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structfourier_1_1fourier__class.html" target="_self">fourier_class</a></td><td class="desc">Base class containing fourier memory </td></tr>
-<tr id="row_65_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacefourier_1_1check.html" target="_self">check</a></td><td class="desc">Interface for checking results of the unit tests </td></tr>
-<tr id="row_66_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacefunctions.html" target="_self">functions</a></td><td class="desc">This module containes functions used by the profiles </td></tr>
-<tr id="row_67_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>ga_mod</b></td><td class="desc"></td></tr>
-<tr id="row_68_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>gade_mod</b></td><td class="desc"></td></tr>
-<tr id="row_69_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>gmres</b></td><td class="desc"></td></tr>
-<tr id="row_70_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>gmres_dim</b></td><td class="desc"></td></tr>
-<tr id="row_71_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_71_" class="arrow" onclick="toggleFolder('71_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>gmres_lib</b></td><td class="desc"></td></tr>
-<tr id="row_71_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgmres__lib_1_1gmres__info.html" target="_self">gmres_info</a></td><td class="desc"></td></tr>
-<tr id="row_72_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>gmres_mod</b></td><td class="desc"></td></tr>
-<tr id="row_73_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_73_" class="arrow" onclick="toggleFolder('73_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceguassian__process.html" target="_self">guassian_process</a></td><td class="desc">Defines the base class of the type guassian_process_class. The <a class="el" href="namespaceguassian__process.html" title="Defines the base class of the type guassian_process_class. The guassian_process contains code to comp...">guassian_process</a> contains code to compuet guassian process profiles </td></tr>
-<tr id="row_73_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structguassian__process_1_1gaussp__class.html" target="_self">gaussp_class</a></td><td class="desc">Base class representing a gaussian process </td></tr>
-<tr id="row_73_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structguassian__process_1_1gaussp__class__pointer.html" target="_self">gaussp_class_pointer</a></td><td class="desc">Pointer to a gaussian process object. Used for creating arrays of gaussian process pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_74_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_74_" class="arrow" onclick="toggleFolder('74_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>hessian</b></td><td class="desc"></td></tr>
-<tr id="row_74_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacehessian_1_1gather__array.html" target="_self">gather_array</a></td><td class="desc"></td></tr>
-<tr id="row_75_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>init_geometry</b></td><td class="desc"></td></tr>
-<tr id="row_76_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_76_" class="arrow" onclick="toggleFolder('76_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintegration__path.html" target="_self">integration_path</a></td><td class="desc">Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path </td></tr>
-<tr id="row_76_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__class.html" target="_self">integration_path_class</a></td><td class="desc">Base class containing the parameters of the integration method to use </td></tr>
-<tr id="row_76_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__gleg__class.html" target="_self">integration_path_gleg_class</a></td><td class="desc">Subclass to use Gauss Legendre Quadrature </td></tr>
-<tr id="row_76_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1integration__path__hp__glep__class.html" target="_self">integration_path_hp_glep_class</a></td><td class="desc">Subclass to use hp approch </td></tr>
-<tr id="row_76_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1vertex.html" target="_self">vertex</a></td><td class="desc">A single point in space defined by an z, y, z coordinate. A vertex is structured as a singly linked list </td></tr>
-<tr id="row_76_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1test__context.html" target="_self">test_context</a></td><td class="desc">A type for the test cases </td></tr>
-<tr id="row_76_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path_1_1test__search__context.html" target="_self">test_search_context</a></td><td class="desc">A type for the test cases </td></tr>
-<tr id="row_76_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1path__construct.html" target="_self">path_construct</a></td><td class="desc">Construction interface using <a class="el" href="interfaceintegration__path_1_1path__construct.html#a673e3bfd4635bd56c99612487fb3f9ce">path_construct_vertex</a> </td></tr>
-<tr id="row_76_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1path__destruct.html" target="_self">path_destruct</a></td><td class="desc">Destruct interface using <a class="el" href="interfaceintegration__path_1_1path__destruct.html#aa12dbaef70b4a4c1224499bf5904753a">path_destruct_vertex</a> </td></tr>
-<tr id="row_76_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path_1_1check.html" target="_self">check</a></td><td class="desc">Interface for checking the results of the unit tests </td></tr>
-<tr id="row_77_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_77_" class="arrow" onclick="toggleFolder('77_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintegration__path__context.html" target="_self">integration_path_context</a></td><td class="desc">Module is part of the LIBSTELL. This modules contains code to define and integrate along an arbitray path </td></tr>
-<tr id="row_77_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path__context_1_1integration__path__context__class.html" target="_self">integration_path_context_class</a></td><td class="desc">Integration context object interface </td></tr>
-<tr id="row_77_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegration__path__context_1_1search__path__context__class.html" target="_self">search_path_context_class</a></td><td class="desc">Search context object interface </td></tr>
-<tr id="row_77_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path__context_1_1integration__function.html" target="_self">integration_function</a></td><td class="desc">Interface for the integration function </td></tr>
-<tr id="row_77_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegration__path__context_1_1search__function.html" target="_self">search_function</a></td><td class="desc">Interface for the search function </td></tr>
-<tr id="row_78_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_78_" class="arrow" onclick="toggleFolder('78_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceintpol.html" target="_self">intpol</a></td><td class="desc">Implements interferometry/polarimetry diagnostic. Defines the base class of the type <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> </td></tr>
-<tr id="row_78_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__class.html" target="_self">intpol_class</a></td><td class="desc">Base class representing a interferometer signal </td></tr>
-<tr id="row_78_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__pol__class.html" target="_self">intpol_pol_class</a></td><td class="desc">Base class representing a polarimetry signal </td></tr>
-<tr id="row_78_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__int__context.html" target="_self">intpol_int_context</a></td><td class="desc">Struture to hole all memort needed to be sent to the integration callback function </td></tr>
-<tr id="row_78_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__pol__context.html" target="_self">intpol_pol_context</a></td><td class="desc">Struture to hole all memort needed to be sent to the integration callback function </td></tr>
-<tr id="row_78_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__i.html" target="_self">intpol_gp_int_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function of a point </td></tr>
-<tr id="row_78_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__i.html" target="_self">intpol_gp_pol_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function of a point </td></tr>
-<tr id="row_78_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__s.html" target="_self">intpol_gp_int_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_78_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__s.html" target="_self">intpol_gp_pol_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_78_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__int__context__x.html" target="_self">intpol_gp_int_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for position </td></tr>
-<tr id="row_78_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintpol_1_1intpol__gp__pol__context__x.html" target="_self">intpol_gp_pol_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for position </td></tr>
-<tr id="row_79_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceipch__dot.html" target="_self">ipch_dot</a></td><td class="desc">Module for opening and reading a 'ipch.' file. The file format for these files are documented in <a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a> </td></tr>
-<tr id="row_80_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_80_" class="arrow" onclick="toggleFolder('80_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>ipch_t</b></td><td class="desc"></td></tr>
-<tr id="row_80_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structipch__t_1_1ipch__desc.html" target="_self">ipch_desc</a></td><td class="desc"></td></tr>
-<tr id="row_81_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceisland__params.html" target="_self">island_params</a></td><td class="desc">This file contains fix parameters related to the computational grids </td></tr>
-<tr id="row_82_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_82_" class="arrow" onclick="toggleFolder('82_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter.html" target="_self">limiter</a></td><td class="desc">Defines the base class of the type <a class="el" href="structlimiter_1_1limiter__class.html">limiter_class</a> </td></tr>
-<tr id="row_82_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter_1_1limiter__class.html" target="_self">limiter_class</a></td><td class="desc">Base class representing a limiter signal </td></tr>
-<tr id="row_83_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_83_" class="arrow" onclick="toggleFolder('83_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter__grid.html" target="_self">limiter_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid_class</a> </td></tr>
-<tr id="row_83_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html" target="_self">limiter_grid_class</a></td><td class="desc">Base class representing a limiter signal </td></tr>
-<tr id="row_84_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_84_" class="arrow" onclick="toggleFolder('84_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacelimiter__iso__t.html" target="_self">limiter_iso_t</a></td><td class="desc">Defines the base class of the type limiter_iso </td></tr>
-<tr id="row_84_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structlimiter__iso__t_1_1limiter__iso__class.html" target="_self">limiter_iso_class</a></td><td class="desc">Base class representing a limiter_iso function </td></tr>
-<tr id="row_85_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceline__segment.html" target="_self">line_segment</a></td><td class="desc">Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sigments. These line segments are assumed to be specified such that xx(i) &lt; xx(i + 1) </td></tr>
-<tr id="row_86_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>linear1_mod</b></td><td class="desc"></td></tr>
-<tr id="row_87_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_87_" class="arrow" onclick="toggleFolder('87_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>liprec</b></td><td class="desc"></td></tr>
-<tr id="row_87_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gbfa.html" target="_self">li_gbfa</a></td><td class="desc"></td></tr>
-<tr id="row_87_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gbsl.html" target="_self">li_gbsl</a></td><td class="desc"></td></tr>
-<tr id="row_87_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gefa.html" target="_self">li_gefa</a></td><td class="desc"></td></tr>
-<tr id="row_87_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceliprec_1_1li__gesl.html" target="_self">li_gesl</a></td><td class="desc"></td></tr>
-<tr id="row_88_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>lmpar_mod</b></td><td class="desc"></td></tr>
-<tr id="row_89_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_89_" class="arrow" onclick="toggleFolder('89_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacem__grid.html" target="_self">m_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>. This contains the state variables to define the vacuum vector potential </td></tr>
-<tr id="row_89_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structm__grid_1_1m__grid__class.html" target="_self">m_grid_class</a></td><td class="desc">Base class representing a m grid. This is grid contains information about the vacuum fields </td></tr>
-<tr id="row_90_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_90_" class="arrow" onclick="toggleFolder('90_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemagnetic.html" target="_self">magnetic</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> </td></tr>
-<tr id="row_90_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmagnetic_1_1magnetic__class.html" target="_self">magnetic_class</a></td><td class="desc">Base class representing a magnetic signal </td></tr>
-<tr id="row_91_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_91_" class="arrow" onclick="toggleFolder('91_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemagnetic__response.html" target="_self">magnetic_response</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> </td></tr>
-<tr id="row_91_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmagnetic__response_1_1magnetic__response__class.html" target="_self">magnetic_response_class</a></td><td class="desc">Base class representing a magnetic signal response function </td></tr>
-<tr id="row_91_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html" target="_self">magnetic_response_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a> types using <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acf69545ff550e45977cf604d3e12984d">magnetic_response_construct_new</a>, &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#acbfe705d07dc8eadd2eeb86d884069cc">magnetic_response_construct_point</a> or &amp; <a class="el" href="interfacemagnetic__response_1_1magnetic__response__construct.html#a6c35981b55bef81a77099b7678fec1eb">magnetic_response_construct_netcdf</a> </td></tr>
-<tr id="row_92_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>makegrid_global</b></td><td class="desc"></td></tr>
-<tr id="row_93_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>math_utilities</b></td><td class="desc"></td></tr>
-<tr id="row_94_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_94_" class="arrow" onclick="toggleFolder('94_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>mddc_cdf</b></td><td class="desc"></td></tr>
-<tr id="row_94_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__define.html" target="_self">mddc_cdf_define</a></td><td class="desc"></td></tr>
-<tr id="row_94_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__write.html" target="_self">mddc_cdf_write</a></td><td class="desc"></td></tr>
-<tr id="row_94_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__cdf_1_1mddc__cdf__read.html" target="_self">mddc_cdf_read</a></td><td class="desc"></td></tr>
-<tr id="row_95_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_95_" class="arrow" onclick="toggleFolder('95_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>mddc_t</b></td><td class="desc"></td></tr>
-<tr id="row_95_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmddc__t_1_1mddc__mrf.html" target="_self">mddc_mrf</a></td><td class="desc"></td></tr>
-<tr id="row_95_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmddc__t_1_1mddc__desc.html" target="_self">mddc_desc</a></td><td class="desc"></td></tr>
-<tr id="row_95_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1assignment_07_0a_08.html" target="_self">assignment(=)</a></td><td class="desc"></td></tr>
-<tr id="row_95_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__construct.html" target="_self">mddc_construct</a></td><td class="desc"></td></tr>
-<tr id="row_95_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__destroy.html" target="_self">mddc_destroy</a></td><td class="desc"></td></tr>
-<tr id="row_95_5_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacemddc__t_1_1mddc__write.html" target="_self">mddc_write</a></td><td class="desc"></td></tr>
-<tr id="row_96_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemetrics.html" target="_self">metrics</a></td><td class="desc">Module for reading in VMEC input and computing metric elements on the SIESTA (sqrt-flux) radial grid. Computes and stores the real-space metric elements, Jacobian based on square root of fluc splined vmec coordinate system </td></tr>
-<tr id="row_97_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>mgrid_mod</b></td><td class="desc"></td></tr>
-<tr id="row_98_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_98_" class="arrow" onclick="toggleFolder('98_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemodel.html" target="_self">model</a></td><td class="desc">Defines the base class of the type <a class="el" href="structmodel_1_1model__class.html">model_class</a>. The model contains information not specific to the equilibrium </td></tr>
-<tr id="row_98_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmodel_1_1model__class.html" target="_self">model_class</a></td><td class="desc">Base class representing a model </td></tr>
-<tr id="row_99_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemodel__state.html" target="_self">model_state</a></td><td class="desc">Contains parameters defining the bit positions for flags that mark changes in different parts of the model </td></tr>
-<tr id="row_100_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>modular_coils</b></td><td class="desc"></td></tr>
-<tr id="row_101_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacempi__inc.html" target="_self">mpi_inc</a></td><td class="desc">Umbrella module avoid multiple inlcudes of the mpif.h header </td></tr>
-<tr id="row_102_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>mpi_params</b></td><td class="desc"></td></tr>
-<tr id="row_103_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_103_" class="arrow" onclick="toggleFolder('103_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemse.html" target="_self">mse</a></td><td class="desc">Implements motional stark effect diagnostic. Defines the base class of the type <a class="el" href="structmse_1_1mse__class.html">mse_class</a> </td></tr>
-<tr id="row_103_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structmse_1_1mse__class.html" target="_self">mse_class</a></td><td class="desc">Base class representing a mse signal </td></tr>
-<tr id="row_104_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacemse__dot.html" target="_self">mse_dot</a></td><td class="desc">Module for opening and reading a 'mse.' file. The file format for these files are documented in <a class="el" href="mse_dot_sec.html">Motional Stark Effect Diagnostic Dot File</a> </td></tr>
-<tr id="row_105_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_105_" class="arrow" onclick="toggleFolder('105_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacenetcdf__inc.html" target="_self">netcdf_inc</a></td><td class="desc">Work around to fix some netcdf import problems with the Ezcdf. This module emulates the F77 interface using the F90 interface </td></tr>
-<tr id="row_105_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__open.html" target="_self">nf_open</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_105_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__create.html" target="_self">nf_create</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_105_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__close.html" target="_self">nf_close</a></td><td class="desc">Interface to open a file </td></tr>
-<tr id="row_105_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacenetcdf__inc_1_1nf__enddef.html" target="_self">nf_enddef</a></td><td class="desc">Interface to inquire a dimension id </td></tr>
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-<tr id="row_109_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>parallel_include_module</b></td><td class="desc"></td></tr>
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-<tr id="row_119_243_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecbicub.html" target="_self">vecbicub</a></td><td class="desc"></td></tr>
-<tr id="row_119_244_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecherm1.html" target="_self">vecherm1</a></td><td class="desc"></td></tr>
-<tr id="row_119_245_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecherm2.html" target="_self">vecherm2</a></td><td class="desc"></td></tr>
-<tr id="row_119_246_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecherm3.html" target="_self">vecherm3</a></td><td class="desc"></td></tr>
-<tr id="row_119_247_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecin2d__argchk.html" target="_self">vecin2d_argchk</a></td><td class="desc"></td></tr>
-<tr id="row_119_248_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecin3d__argchk.html" target="_self">vecin3d_argchk</a></td><td class="desc"></td></tr>
-<tr id="row_119_249_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecintrp2d.html" target="_self">vecintrp2d</a></td><td class="desc"></td></tr>
-<tr id="row_119_250_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecintrp3d.html" target="_self">vecintrp3d</a></td><td class="desc"></td></tr>
-<tr id="row_119_251_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecpc1.html" target="_self">vecpc1</a></td><td class="desc"></td></tr>
-<tr id="row_119_252_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecpc2.html" target="_self">vecpc2</a></td><td class="desc"></td></tr>
-<tr id="row_119_253_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecpc3.html" target="_self">vecpc3</a></td><td class="desc"></td></tr>
-<tr id="row_119_254_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vecspline.html" target="_self">vecspline</a></td><td class="desc"></td></tr>
-<tr id="row_119_255_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1vectricub.html" target="_self">vectricub</a></td><td class="desc"></td></tr>
-<tr id="row_119_256_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1v__spline.html" target="_self">v_spline</a></td><td class="desc"></td></tr>
-<tr id="row_119_257_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1xlookup.html" target="_self">xlookup</a></td><td class="desc"></td></tr>
-<tr id="row_119_258_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacepspline__calls_1_1zonfind.html" target="_self">zonfind</a></td><td class="desc"></td></tr>
-<tr id="row_120_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>ptrd_mod</b></td><td class="desc"></td></tr>
-<tr id="row_121_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>read_boozer_mod</b></td><td class="desc"></td></tr>
-<tr id="row_122_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_122_" class="arrow" onclick="toggleFolder('122_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>read_response</b></td><td class="desc"></td></tr>
-<tr id="row_122_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structread__response_1_1clresfun.html" target="_self">clresfun</a></td><td class="desc"></td></tr>
-<tr id="row_122_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structread__response_1_1prfun.html" target="_self">prfun</a></td><td class="desc"></td></tr>
-<tr id="row_123_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_123_" class="arrow" onclick="toggleFolder('123_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>read_response_nompi</b></td><td class="desc"></td></tr>
-<tr id="row_123_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structread__response__nompi_1_1clresfun.html" target="_self">clresfun</a></td><td class="desc"></td></tr>
-<tr id="row_123_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structread__response__nompi_1_1prfun.html" target="_self">prfun</a></td><td class="desc"></td></tr>
-<tr id="row_124_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>read_v3post_mod</b></td><td class="desc"></td></tr>
-<tr id="row_125_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>read_wout_mod</b></td><td class="desc"></td></tr>
-<tr id="row_126_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>realspace</b></td><td class="desc"></td></tr>
-<tr id="row_127_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_127_" class="arrow" onclick="toggleFolder('127_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacereconstruction.html" target="_self">reconstruction</a></td><td class="desc">Defines the base class of the type <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a>. This class contains the minimization algorithm </td></tr>
-<tr id="row_127_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structreconstruction_1_1reconstruction__class.html" target="_self">reconstruction_class</a></td><td class="desc">Base class containing all the data needed to reconstruct a model </td></tr>
-<tr id="row_127_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacereconstruction_1_1reconstruction__write__step.html" target="_self">reconstruction_write_step</a></td><td class="desc">Interface for writing out step data </td></tr>
-<tr id="row_128_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacerestart__mod.html" target="_self">restart_mod</a></td><td class="desc">Contains routines for writting the restart file </td></tr>
-<tr id="row_129_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>saddle_coils</b></td><td class="desc"></td></tr>
-<tr id="row_130_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>saddle_surface</b></td><td class="desc"></td></tr>
-<tr id="row_131_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceshared__data.html" target="_self">shared_data</a></td><td class="desc">This file contains variables and parameters used by many modules in SIESTA </td></tr>
-<tr id="row_132_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceshared__functions.html" target="_self">shared_functions</a></td><td class="desc">Subroutines and functions updating MHD forces and Wmhd </td></tr>
-<tr id="row_133_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__bfield.html" target="_self">siesta_bfield</a></td><td class="desc">This file contains subroutines for updating half-grid magnetic fields </td></tr>
-<tr id="row_134_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_134_" class="arrow" onclick="toggleFolder('134_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__context.html" target="_self">siesta_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>. This contains the state variables needed by SIESTA </td></tr>
-<tr id="row_134_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__context_1_1siesta__context__class.html" target="_self">siesta_context_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesiesta__context.html" title="Defines the base class of the type siesta_context_class. This contains the state variables needed by ...">siesta_context</a>. This contains a copy of every variable that is needed to define the SIESTA state </td></tr>
-<tr id="row_135_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__currents.html" target="_self">siesta_currents</a></td><td class="desc">Takes the Curl(B) to return the contravariant current density. Contravariant components of the magnetic field must be converted to covariant components first </td></tr>
-<tr id="row_136_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_136_" class="arrow" onclick="toggleFolder('136_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__equilibrium.html" target="_self">siesta_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>. This module contains all the code necessary to interface V3FIT with SIESTA </td></tr>
-<tr id="row_136_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html" target="_self">siesta_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesiesta__equilibrium.html" title="Defines the base class of the type siesta_class. This module contains all the code necessary to inter...">siesta_equilibrium</a> </td></tr>
-<tr id="row_137_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__error.html" target="_self">siesta_error</a></td><td class="desc">This module contains all the code needed to define an error </td></tr>
-<tr id="row_138_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_138_" class="arrow" onclick="toggleFolder('138_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__file.html" target="_self">siesta_file</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>. This contains the output of a siesta equilibrium </td></tr>
-<tr id="row_138_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__file_1_1siesta__file__class.html" target="_self">siesta_file_class</a></td><td class="desc">Base class representing a siesta output </td></tr>
-<tr id="row_139_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__force.html" target="_self">siesta_force</a></td><td class="desc">Compute the JxB - Grad(p) covariant force components. The plasma is in equilibrium when the force of the magnetic pressure balances the plasma pressure </td></tr>
-<tr id="row_140_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__namelist.html" target="_self">siesta_namelist</a></td><td class="desc">This file contains all the variables and maximum sizes of the inputs for a SIESTA namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs </td></tr>
-<tr id="row_141_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__pressure.html" target="_self">siesta_pressure</a></td><td class="desc">Updates pressure </td></tr>
-<tr id="row_142_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_142_" class="arrow" onclick="toggleFolder('142_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__run.html" target="_self">siesta_run</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>. This module contains all the code necessary to interface setup and run SIESTA </td></tr>
-<tr id="row_142_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsiesta__run_1_1siesta__run__class.html" target="_self">siesta_run_class</a></td><td class="desc">Interface for the <a class="el" href="namespacesiesta__run.html" title="Defines the base class of the type siesta_run_class. This module contains all the code necessary to i...">siesta_run</a> constructor </td></tr>
-<tr id="row_143_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesiesta__state.html" target="_self">siesta_state</a></td><td class="desc">This file contains subroutines for aupdating from t to t + delta_t the magnetic field and pressure as part of the SIESTA project. Stores updated values of JPMN*H, JBSUBXMN*H in Quantities Module </td></tr>
-<tr id="row_144_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_144_" class="arrow" onclick="toggleFolder('144_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesignal.html" target="_self">signal</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> </td></tr>
-<tr id="row_144_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal_1_1signal__class.html" target="_self">signal_class</a></td><td class="desc">Base class representing a signal </td></tr>
-<tr id="row_144_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal_1_1signal__pointer.html" target="_self">signal_pointer</a></td><td class="desc">Pointer to a signal object. Used for creating arrays of signal pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_144_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesignal_1_1signal__construct.html" target="_self">signal_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> types using <a class="el" href="interfacesignal_1_1signal__construct.html#a273530affe49200dfa2ea120360189ee">signal_construct_new</a> or <a class="el" href="interfacesignal_1_1signal__construct.html#a5b551ab7337b59cf88803d93ca26f2dc">signal_construct_diagnostic_netcdf</a> </td></tr>
-<tr id="row_145_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_145_" class="arrow" onclick="toggleFolder('145_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesignal__dot.html" target="_self">signal_dot</a></td><td class="desc">Defines the base class of type <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>. This module contains common code used in parsing diagnostic dot files. The actual parsing of the diagnostic dot file is handled by <a class="el" href="namespaceipch__dot.html">ipch_dot</a>, <a class="el" href="namespacethscte__dot.html">thscte_dot</a> and <a class="el" href="namespacesxrch__dot.html">sxrch_dot</a> </td></tr>
-<tr id="row_145_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsignal__dot_1_1signal__dot__file.html" target="_self">signal_dot_file</a></td><td class="desc">Base class representing a diagnostic dot file. This is an opaqe class </td></tr>
-<tr id="row_146_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>spec_kind_mod</b></td><td class="desc"></td></tr>
-<tr id="row_147_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>spline1_mod</b></td><td class="desc"></td></tr>
-<tr id="row_148_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>stel_constants</b></td><td class="desc"></td></tr>
-<tr id="row_149_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>stel_kinds</b></td><td class="desc"></td></tr>
-<tr id="row_150_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_150_" class="arrow" onclick="toggleFolder('150_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesurface__commandline__parser.html" target="_self">surface_commandline_parser</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> </td></tr>
-<tr id="row_150_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html" target="_self">surface_commandline_parser_class</a></td><td class="desc">Base class containing a parsed surface_commandline </td></tr>
-<tr id="row_151_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_151_" class="arrow" onclick="toggleFolder('151_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesurface__context.html" target="_self">surface_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>. This module contains all the code necessary define a surface for cariddi to read a virtual surface from </td></tr>
-<tr id="row_151_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsurface__context_1_1surface__context__class.html" target="_self">surface_context_class</a></td><td class="desc">Base class representing a surface context. This contains all memory needed to operate surface </td></tr>
-<tr id="row_152_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrch__dot.html" target="_self">sxrch_dot</a></td><td class="desc">Module for opening and reading a 'sxrch.' file. The file format for these files are documented in <a class="el" href="sxrem_dot_sec.html">Soft X-Ray Diagnostic Dot File</a> </td></tr>
-<tr id="row_153_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_153_" class="arrow" onclick="toggleFolder('153_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>sxrch_t</b></td><td class="desc"></td></tr>
-<tr id="row_153_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrch__t_1_1sxrch__desc.html" target="_self">sxrch_desc</a></td><td class="desc"></td></tr>
-<tr id="row_154_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_154_" class="arrow" onclick="toggleFolder('154_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrem.html" target="_self">sxrem</a></td><td class="desc">Defines the base class of the type <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> </td></tr>
-<tr id="row_154_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__class.html" target="_self">sxrem_class</a></td><td class="desc">Base class representing a soft x-ray signal </td></tr>
-<tr id="row_154_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__emiss__class.html" target="_self">sxrem_emiss_class</a></td><td class="desc">Base class representing a soft x-ray emissivity signal </td></tr>
-<tr id="row_154_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__ti__class.html" target="_self">sxrem_ti_class</a></td><td class="desc">Base class representing a soft x-ray ti signal </td></tr>
-<tr id="row_154_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__context.html" target="_self">sxrem_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_154_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__ti__context.html" target="_self">sxrem_ti_context</a></td><td class="desc">Structure to hold all memory needed to be sent to the callback function </td></tr>
-<tr id="row_154_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__i.html" target="_self">sxrem_gp_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for point </td></tr>
-<tr id="row_154_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__i.html" target="_self">sxrem_gp_ti_context_i</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for point </td></tr>
-<tr id="row_154_7_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__s.html" target="_self">sxrem_gp_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_154_8_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__s.html" target="_self">sxrem_gp_ti_context_s</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_154_9_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__context__x.html" target="_self">sxrem_gp_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_154_10_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem_1_1sxrem__gp__ti__context__x.html" target="_self">sxrem_gp_ti_context_x</a></td><td class="desc">Structure to hold all memory needed to be sent to the guassian process callback function for signal </td></tr>
-<tr id="row_155_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_155_" class="arrow" onclick="toggleFolder('155_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrem__ratio.html" target="_self">sxrem_ratio</a></td><td class="desc">Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity profile. This signal feeds back the temperature profile at a specified positon </td></tr>
-<tr id="row_155_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html" target="_self">sxrem_ratio_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a> signal </td></tr>
-<tr id="row_156_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacesxrem__ratio__dot.html" target="_self">sxrem_ratio_dot</a></td><td class="desc">Module for opening and reading a '<a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>.' file. The file format for these files are documented in <a class="el" href="sxrem_ratio_dot_sec.html">Soft X-ray Emissivity Ratio Dot File</a> </td></tr>
-<tr id="row_157_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>sym_check</b></td><td class="desc"></td></tr>
-<tr id="row_158_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_158_" class="arrow" onclick="toggleFolder('158_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>system_mod</b></td><td class="desc"></td></tr>
-<tr id="row_158_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1system.html" target="_self">system</a></td><td class="desc"></td></tr>
-<tr id="row_158_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1chdir.html" target="_self">chdir</a></td><td class="desc"></td></tr>
-<tr id="row_158_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1getenv.html" target="_self">getenv</a></td><td class="desc"></td></tr>
-<tr id="row_158_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1putenv.html" target="_self">putenv</a></td><td class="desc"></td></tr>
-<tr id="row_158_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1pxffork.html" target="_self">pxffork</a></td><td class="desc"></td></tr>
-<tr id="row_158_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1getpid.html" target="_self">getpid</a></td><td class="desc"></td></tr>
-<tr id="row_158_6_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacesystem__mod_1_1pxfwait.html" target="_self">pxfwait</a></td><td class="desc"></td></tr>
-<tr id="row_159_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>tf_coils</b></td><td class="desc"></td></tr>
-<tr id="row_160_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_160_" class="arrow" onclick="toggleFolder('160_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacethomson.html" target="_self">thomson</a></td><td class="desc">Implements thomson scattering diagnostic. Defines the base class of the type <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> </td></tr>
-<tr id="row_160_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__class.html" target="_self">thomson_class</a></td><td class="desc">Base class representing a thomson scattering signal </td></tr>
-<tr id="row_160_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__te__class.html" target="_self">thomson_te_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_160_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__ne__class.html" target="_self">thomson_ne_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_160_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthomson_1_1thomson__p__class.html" target="_self">thomson_p_class</a></td><td class="desc">Base class representing a thomson scattering te signal </td></tr>
-<tr id="row_161_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacethscte__dot.html" target="_self">thscte_dot</a></td><td class="desc">Module for opening and reading a 'thscte.' file. The file format for these files are documented in <a class="el" href="thomson_dot_sec.html">Thomson Scattering Diagnostic Dot File</a> </td></tr>
-<tr id="row_162_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_162_" class="arrow" onclick="toggleFolder('162_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>thscte_t</b></td><td class="desc"></td></tr>
-<tr id="row_162_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structthscte__t_1_1thscte__desc.html" target="_self">thscte_desc</a></td><td class="desc"></td></tr>
-<tr id="row_163_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>timer_mod</b></td><td class="desc"></td></tr>
-<tr id="row_164_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>timer_sub</b></td><td class="desc"></td></tr>
-<tr id="row_165_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>tomnsp_mod</b></td><td class="desc"></td></tr>
-<tr id="row_166_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>totzsp_mod</b></td><td class="desc"></td></tr>
-<tr id="row_167_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>track_mod</b></td><td class="desc"></td></tr>
-<tr id="row_168_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_168_" class="arrow" onclick="toggleFolder('168_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceunprimed__grid.html" target="_self">unprimed_grid</a></td><td class="desc">Defines the base class of the type <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral </td></tr>
-<tr id="row_168_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html" target="_self">unprimed_grid_class</a></td><td class="desc">Base class representing a unprimed grid. This is grid the volume integral will be summed over </td></tr>
-<tr id="row_169_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_169_" class="arrow" onclick="toggleFolder('169_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespaceutilities.html" target="_self">utilities</a></td><td class="desc">This file contains utilities for converting the siesta grids </td></tr>
-<tr id="row_169_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1to__full__mesh.html" target="_self">to_full_mesh</a></td><td class="desc">Interface to convert between half and full mesh using either <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> or <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">to_full_mesh3</a> </td></tr>
-<tr id="row_169_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1to__half__mesh.html" target="_self">to_half_mesh</a></td><td class="desc">Interface to convert between full and half mesh using either <a class="el" href="interfaceutilities_1_1to__half__mesh.html">to_half_mesh</a> or <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a17173a22873cc4031419a3f79fcb5abe">to_half_mesh_p</a> </td></tr>
-<tr id="row_169_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1gradienthalf.html" target="_self">gradienthalf</a></td><td class="desc">Interface to take the gradianet from full to half mesh using either GradientHalf or GradientHalf_p </td></tr>
-<tr id="row_169_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1curl__htof.html" target="_self">curl_htof</a></td><td class="desc">Interface to take the curl on a half mesh quantity and return a full mesh using either <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a> or <a class="el" href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">curl_htof_targ</a> </td></tr>
-<tr id="row_169_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html" target="_self">set_bndy_fouier_m0</a></td><td class="desc">Interface to set the fouier conditions on a quantity for either scalar <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> or vector <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> quantities </td></tr>
-<tr id="row_170_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_170_" class="arrow" onclick="toggleFolder('170_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>v3_utilities</b></td><td class="desc"></td></tr>
-<tr id="row_170_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacev3__utilities_1_1assert.html" target="_self">assert</a></td><td class="desc"></td></tr>
-<tr id="row_170_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacev3__utilities_1_1assert__eq.html" target="_self">assert_eq</a></td><td class="desc"></td></tr>
-<tr id="row_171_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>v3f_vmec_comm</b></td><td class="desc"></td></tr>
-<tr id="row_172_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_172_" class="arrow" onclick="toggleFolder('172_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacev3fit__context.html" target="_self">v3fit_context</a></td><td class="desc">Defines a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object to contain all the memory for running v3fit. Contains methods to write memory to disk </td></tr>
-<tr id="row_172_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__context_1_1v3fit__context__class.html" target="_self">v3fit_context_class</a></td><td class="desc">Base class representing a v3fit context. This contains all memory needed to operate v3fit </td></tr>
-<tr id="row_173_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacev3fit__input.html" target="_self">v3fit_input</a></td><td class="desc">This file contains all the variables and maximum sizes of the inputs for a v3fit namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3FIT task should be copied to a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. All non-parameters are inputs to the namelist input file </td></tr>
-<tr id="row_174_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_174_" class="arrow" onclick="toggleFolder('174_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacev3fit__params.html" target="_self">v3fit_params</a></td><td class="desc">Defines the base class of the type <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> </td></tr>
-<tr id="row_174_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__params_1_1param__recon__class.html" target="_self">param_recon_class</a></td><td class="desc">Class to hold variables needed when a parameter is a reconstruction parameter </td></tr>
-<tr id="row_174_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__params_1_1param__locking__class.html" target="_self">param_locking_class</a></td><td class="desc">Class to hold variables needed when a parameter is a locking parameter. The locking parameter coefficents are stored in the correlation array of the parent type </td></tr>
-<tr id="row_174_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__params_1_1param__class.html" target="_self">param_class</a></td><td class="desc">Base class representing a reconstructed parameter. An upper and lower bound may be set for the parameter value </td></tr>
-<tr id="row_174_3_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3fit__params_1_1param__pointer.html" target="_self">param_pointer</a></td><td class="desc">Pointer to a parameter object. Used for creating arrays of signal pointers. This is needed because fortran does not allow arrays of pointers directly </td></tr>
-<tr id="row_174_4_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacev3fit__params_1_1param__construct.html" target="_self">param_construct</a></td><td class="desc">Interface for the construction of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> types using <a class="el" href="interfacev3fit__params_1_1param__construct.html#a4cf2357c5f3fcfc18f57dc8f67c5d21a">param_construct_basic</a> or <a class="el" href="interfacev3fit__params_1_1param__construct.html#a5ecc5857245f36ea4582da8024617c94">param_construct_recon</a> </td></tr>
-<tr id="row_174_5_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacev3fit__params_1_1param__write__step__data.html" target="_self">param_write_step_data</a></td><td class="desc">Interface for the writting of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> data to the result file using <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">param_write_step_data_1</a> or <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">param_write_step_data_2</a> </td></tr>
-<tr id="row_175_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_175_" class="arrow" onclick="toggleFolder('175_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>v3post_rfun</b></td><td class="desc"></td></tr>
-<tr id="row_175_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3post__rfun_1_1signals.html" target="_self">signals</a></td><td class="desc"></td></tr>
-<tr id="row_176_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_176_" class="arrow" onclick="toggleFolder('176_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacev3rfun__context.html" target="_self">v3rfun_context</a></td><td class="desc">Defines a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object to contain all the memory for running v3rfun </td></tr>
-<tr id="row_176_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html" target="_self">v3rfun_context_class</a></td><td class="desc">Base class representing a v3rfun context. This contains all memory needed to operate v3rfun </td></tr>
-<tr id="row_177_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacev3rfun__input.html" target="_self">v3rfun_input</a></td><td class="desc">This file contains all the variables and maximum sizes of the inputs for a V3RFUN namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3RFUN task should be copied to a <a class="el" href="namespacev3rfun__context.html">v3rfun_context</a> object. All non-parameters are inputs to the namelist input file </td></tr>
-<tr id="row_178_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vac_persistent</b></td><td class="desc"></td></tr>
-<tr id="row_179_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_179_" class="arrow" onclick="toggleFolder('179_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>vacfield_mod</b></td><td class="desc"></td></tr>
-<tr id="row_179_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvacfield__mod_1_1angles__shifts.html" target="_self">angles_shifts</a></td><td class="desc"></td></tr>
-<tr id="row_179_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevacfield__mod_1_1write__invac.html" target="_self">write_invac</a></td><td class="desc"></td></tr>
-<tr id="row_180_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vacmod</b></td><td class="desc"></td></tr>
-<tr id="row_181_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vacmod0</b></td><td class="desc"></td></tr>
-<tr id="row_182_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_182_" class="arrow" onclick="toggleFolder('182_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevacuum__equilibrium.html" target="_self">vacuum_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>. This module contains all the code necessary to interface V3FIT with a vacuum equilibrium </td></tr>
-<tr id="row_182_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html" target="_self">vacuum_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacevacuum__equilibrium.html" title="Defines the base class of the type vacuum_class. This module contains all the code necessary to inter...">vacuum_equilibrium</a> </td></tr>
-<tr id="row_183_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevacuum__input.html" target="_self">vacuum_input</a></td><td class="desc">This file contains all the variables and maximum sizes of the inputs for a vacuum namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a vacuum equilibrium should be copied to a <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a> object. All non-parameters are inputs to the namelist input file </td></tr>
-<tr id="row_184_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vcoilpts</b></td><td class="desc"></td></tr>
-<tr id="row_185_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_185_" class="arrow" onclick="toggleFolder('185_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>vertex_list</b></td><td class="desc"></td></tr>
-<tr id="row_185_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1point.html" target="_self">point</a></td><td class="desc"></td></tr>
-<tr id="row_185_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1magfield.html" target="_self">magfield</a></td><td class="desc"></td></tr>
-<tr id="row_185_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1pbfield.html" target="_self">pbfield</a></td><td class="desc"></td></tr>
-<tr id="row_185_3_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1vertex.html" target="_self">vertex</a></td><td class="desc"></td></tr>
-<tr id="row_185_4_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvertex__list_1_1pvertex.html" target="_self">pvertex</a></td><td class="desc"></td></tr>
-<tr id="row_186_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vf_coils</b></td><td class="desc"></td></tr>
-<tr id="row_187_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vforces</b></td><td class="desc"></td></tr>
-<tr id="row_188_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_188_" class="arrow" onclick="toggleFolder('188_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__context.html" target="_self">vmec_context</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>. This contains the state variables needed by VMEC </td></tr>
-<tr id="row_188_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__context_1_1vmec__context__class.html" target="_self">vmec_context_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a>. This contains a copy of every variable that is needed to define the VMEC state </td></tr>
-<tr id="row_189_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_dim</b></td><td class="desc"></td></tr>
-<tr id="row_190_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_190_" class="arrow" onclick="toggleFolder('190_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__equilibrium.html" target="_self">vmec_equilibrium</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>. This module contains all the code necessary to interface V3FIT with VMEC </td></tr>
-<tr id="row_190_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html" target="_self">vmec_magnetic_cache</a></td><td class="desc">Object to cache data needed to compute magnetic signals </td></tr>
-<tr id="row_190_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__equilibrium_1_1vmec__class.html" target="_self">vmec_class</a></td><td class="desc">Base class representing a <a class="el" href="namespacevmec__equilibrium.html" title="Defines the base class of the type vmec_class. This module contains all the code necessary to interfa...">vmec_equilibrium</a> </td></tr>
-<tr id="row_190_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__equilibrium_1_1runvmec.html" target="_self">runvmec</a></td><td class="desc">Forward declare the interface for <a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a> </td></tr>
-<tr id="row_191_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_191_" class="arrow" onclick="toggleFolder('191_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__file.html" target="_self">vmec_file</a></td><td class="desc">Defines the base class of the type <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>. This contains the output of a vmec equilibrium </td></tr>
-<tr id="row_191_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structvmec__file_1_1vmec__file__class.html" target="_self">vmec_file_class</a></td><td class="desc">Base class representing a vmec output </td></tr>
-<tr id="row_192_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_history</b></td><td class="desc"></td></tr>
-<tr id="row_193_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacevmec__input.html" target="_self">vmec_input</a></td><td class="desc">This file contains all the variables for a VMEC namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs </td></tr>
-<tr id="row_194_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_io</b></td><td class="desc"></td></tr>
-<tr id="row_195_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_main</b></td><td class="desc"></td></tr>
-<tr id="row_196_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_params</b></td><td class="desc"></td></tr>
-<tr id="row_197_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_persistent</b></td><td class="desc"></td></tr>
-<tr id="row_198_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmec_seq</b></td><td class="desc"></td></tr>
-<tr id="row_199_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_199_" class="arrow" onclick="toggleFolder('199_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>vmec_test</b></td><td class="desc"></td></tr>
-<tr id="row_199_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classvmec__test_1_1commandline__parser.html" target="_self">commandline_parser</a></td><td class="desc">A radial quantity </td></tr>
-<tr id="row_200_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_200_" class="arrow" onclick="toggleFolder('200_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>vmec_utils</b></td><td class="desc"></td></tr>
-<tr id="row_200_0_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1getbcyl.html" target="_self">getbcyl</a></td><td class="desc"></td></tr>
-<tr id="row_200_1_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1getjcyl.html" target="_self">getjcyl</a></td><td class="desc"></td></tr>
-<tr id="row_200_2_" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacevmec__utils_1_1mse__pitch.html" target="_self">mse_pitch</a></td><td class="desc"></td></tr>
-<tr id="row_201_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vmercier</b></td><td class="desc"></td></tr>
-<tr id="row_202_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vname0</b></td><td class="desc"></td></tr>
-<tr id="row_203_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vname1</b></td><td class="desc"></td></tr>
-<tr id="row_204_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vparams</b></td><td class="desc"></td></tr>
-<tr id="row_205_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vspline</b></td><td class="desc"></td></tr>
-<tr id="row_206_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>vsvd0</b></td><td class="desc"></td></tr>
-<tr id="row_207_"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_207_" class="arrow" onclick="toggleFolder('207_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><b>write_array_generic</b></td><td class="desc"></td></tr>
-<tr id="row_207_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacewrite__array__generic_1_1write__array.html" target="_self">write_array</a></td><td class="desc"></td></tr>
-<tr id="row_208_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>write_mgrid</b></td><td class="desc"></td></tr>
-<tr id="row_209_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>write_mod</b></td><td class="desc"></td></tr>
-<tr id="row_210_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">N</span></span><b>xstuff</b></td><td class="desc"></td></tr>
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-Variables</h2></td></tr>
-<tr class="memitem:ab3d76988c22dbd927b12b5c3b6fb2e24"><td class="memItemLeft" align="right" valign="top"><a id="ab3d76988c22dbd927b12b5c3b6fb2e24"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ab3d76988c22dbd927b12b5c3b6fb2e24">ngmres_steps</a> = 100</td></tr>
-<tr class="memdesc:ab3d76988c22dbd927b12b5c3b6fb2e24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max number of gmres steps (10-100) should scale with ns. <br /></td></tr>
-<tr class="separator:ab3d76988c22dbd927b12b5c3b6fb2e24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2136a817024198f510d5cccf04244312"><td class="memItemLeft" align="right" valign="top"><a id="a2136a817024198f510d5cccf04244312"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a2136a817024198f510d5cccf04244312">prediag</a> = 1</td></tr>
-<tr class="memdesc:a2136a817024198f510d5cccf04244312"><td class="mdescLeft">&#160;</td><td class="mdescRight">Diagonal preconditioning flag. <br /></td></tr>
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-<tr class="memitem:a462ae7b254709bc1082d49d8b1baf0dc"><td class="memItemLeft" align="right" valign="top"><a id="a462ae7b254709bc1082d49d8b1baf0dc"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a462ae7b254709bc1082d49d8b1baf0dc">preblock</a> = 2</td></tr>
-<tr class="memdesc:a462ae7b254709bc1082d49d8b1baf0dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Block preconditioning flag. <br /></td></tr>
-<tr class="separator:a462ae7b254709bc1082d49d8b1baf0dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac1c7b01b86fc7c161baaab14613aebfa"><td class="memItemLeft" align="right" valign="top"><a id="ac1c7b01b86fc7c161baaab14613aebfa"></a>
-real(dp), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac1c7b01b86fc7c161baaab14613aebfa">fsq_res</a> = 1.E-16_dp</td></tr>
-<tr class="memdesc:ac1c7b01b86fc7c161baaab14613aebfa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Threshold force for turning off resistive perturbations. <br /></td></tr>
-<tr class="separator:ac1c7b01b86fc7c161baaab14613aebfa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a870af815c7e419aa7fd15c6998fb3be5"><td class="memItemLeft" align="right" valign="top"><a id="a870af815c7e419aa7fd15c6998fb3be5"></a>
-real(dp), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a870af815c7e419aa7fd15c6998fb3be5">levm_ped</a> = 1.E-10_dp</td></tr>
-<tr class="memdesc:a870af815c7e419aa7fd15c6998fb3be5"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a870af815c7e419aa7fd15c6998fb3be5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a796a98cb7574152efe8be94de5e280a3"><td class="memItemLeft" align="right" valign="top"><a id="a796a98cb7574152efe8be94de5e280a3"></a>
-real(dp), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a796a98cb7574152efe8be94de5e280a3">mu_ped</a> = 1.E-8_dp</td></tr>
-<tr class="memdesc:a796a98cb7574152efe8be94de5e280a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pedestal value of levenberg/mu. Should be between 10^-5 and 10^-10. <br /></td></tr>
-<tr class="separator:a796a98cb7574152efe8be94de5e280a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e8ce514047a8a82235d0dc60683d995"><td class="memItemLeft" align="right" valign="top"><a id="a5e8ce514047a8a82235d0dc60683d995"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a5e8ce514047a8a82235d0dc60683d995">gmres_peak</a> = 2</td></tr>
-<tr class="memdesc:a5e8ce514047a8a82235d0dc60683d995"><td class="mdescLeft">&#160;</td><td class="mdescRight">GMRES peak improvement. <br /></td></tr>
-<tr class="separator:a5e8ce514047a8a82235d0dc60683d995"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af108db016f74863d012e129c5edcc785"><td class="memItemLeft" align="right" valign="top"><a id="af108db016f74863d012e129c5edcc785"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#af108db016f74863d012e129c5edcc785">gmres_no_peak</a> = 1</td></tr>
-<tr class="memdesc:af108db016f74863d012e129c5edcc785"><td class="mdescLeft">&#160;</td><td class="mdescRight">GMRES no_peak improvement. <br /></td></tr>
-<tr class="separator:af108db016f74863d012e129c5edcc785"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4ea632850995d16e455ac7d74bb2f808"><td class="memItemLeft" align="right" valign="top"><a id="a4ea632850995d16e455ac7d74bb2f808"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4ea632850995d16e455ac7d74bb2f808">unit_out</a> = 336</td></tr>
-<tr class="memdesc:a4ea632850995d16e455ac7d74bb2f808"><td class="mdescLeft">&#160;</td><td class="mdescRight">File output io unit. <br /></td></tr>
-<tr class="separator:a4ea632850995d16e455ac7d74bb2f808"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a13ce3eff055bfda1ae490bea9f288f1f"><td class="memItemLeft" align="right" valign="top"><a id="a13ce3eff055bfda1ae490bea9f288f1f"></a>
-logical, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a13ce3eff055bfda1ae490bea9f288f1f">l_pedge</a> = .true.</td></tr>
-<tr class="memdesc:a13ce3eff055bfda1ae490bea9f288f1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Preserve s=1 as iso-pressure surface. <br /></td></tr>
-<tr class="separator:a13ce3eff055bfda1ae490bea9f288f1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aab682fd7d88c625f78ccf2c0b6faa0c7"><td class="memItemLeft" align="right" valign="top">logical, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aab682fd7d88c625f78ccf2c0b6faa0c7">l_natural</a> = .TRUE.</td></tr>
-<tr class="memdesc:aab682fd7d88c625f78ccf2c0b6faa0c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Natural boundry condition flag.  <a href="namespaceshared__data.html#aab682fd7d88c625f78ccf2c0b6faa0c7">More...</a><br /></td></tr>
-<tr class="separator:aab682fd7d88c625f78ccf2c0b6faa0c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a67e206bccb6d01b748b128771203436d"><td class="memItemLeft" align="right" valign="top"><a id="a67e206bccb6d01b748b128771203436d"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a67e206bccb6d01b748b128771203436d">neqs</a></td></tr>
-<tr class="memdesc:a67e206bccb6d01b748b128771203436d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of elements in the xc array. <br /></td></tr>
-<tr class="separator:a67e206bccb6d01b748b128771203436d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6fcb4c590ed8723e15d7e6fcf07c820a"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a6fcb4c590ed8723e15d7e6fcf07c820a">ndims</a></td></tr>
-<tr class="memdesc:a6fcb4c590ed8723e15d7e6fcf07c820a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of independent variables.  <a href="namespaceshared__data.html#a6fcb4c590ed8723e15d7e6fcf07c820a">More...</a><br /></td></tr>
-<tr class="separator:a6fcb4c590ed8723e15d7e6fcf07c820a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abd4ab35878e225ec82cb9575ac0ecbfb"><td class="memItemLeft" align="right" valign="top"><a id="abd4ab35878e225ec82cb9575ac0ecbfb"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#abd4ab35878e225ec82cb9575ac0ecbfb">niter</a></td></tr>
-<tr class="memdesc:abd4ab35878e225ec82cb9575ac0ecbfb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of iteration to run. <br /></td></tr>
-<tr class="separator:abd4ab35878e225ec82cb9575ac0ecbfb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac73a9a3c79fa0074728bbabc744ec040"><td class="memItemLeft" align="right" valign="top"><a id="ac73a9a3c79fa0074728bbabc744ec040"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac73a9a3c79fa0074728bbabc744ec040">mblk_size</a></td></tr>
-<tr class="memdesc:ac73a9a3c79fa0074728bbabc744ec040"><td class="mdescLeft">&#160;</td><td class="mdescRight">Block size. (mpol + 1)*(2*ntor + 1)*ndims. <br /></td></tr>
-<tr class="separator:ac73a9a3c79fa0074728bbabc744ec040"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4ae8c6b693a5004b362a9ce4ca1aaaf6"><td class="memItemLeft" align="right" valign="top"><a id="a4ae8c6b693a5004b362a9ce4ca1aaaf6"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4ae8c6b693a5004b362a9ce4ca1aaaf6">nsp</a></td></tr>
-<tr class="memdesc:a4ae8c6b693a5004b362a9ce4ca1aaaf6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total radial grid size in the VMEC region. <br /></td></tr>
-<tr class="separator:a4ae8c6b693a5004b362a9ce4ca1aaaf6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="memItemLeft" align="right" valign="top"><a id="a33e8c2a3a278ef7f959c79164ecf09a4"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a33e8c2a3a278ef7f959c79164ecf09a4">nprecon</a></td></tr>
-<tr class="memdesc:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Preconditioner flag. <br /></td></tr>
-<tr class="separator:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7497643de2848aaf6a144842b10a3315"><td class="memItemLeft" align="right" valign="top"><a id="a7497643de2848aaf6a144842b10a3315"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a7497643de2848aaf6a144842b10a3315">nprecon_type</a></td></tr>
-<tr class="memdesc:a7497643de2848aaf6a144842b10a3315"><td class="mdescLeft">&#160;</td><td class="mdescRight">Preconditioner type. <br /></td></tr>
-<tr class="separator:a7497643de2848aaf6a144842b10a3315"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a17742427a611e4fbdf91af6885a78902"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a17742427a611e4fbdf91af6885a78902">ngmres_type</a> = gmres</td></tr>
-<tr class="memdesc:a17742427a611e4fbdf91af6885a78902"><td class="mdescLeft">&#160;</td><td class="mdescRight">GMRES control flag.  <a href="namespaceshared__data.html#a17742427a611e4fbdf91af6885a78902">More...</a><br /></td></tr>
-<tr class="separator:a17742427a611e4fbdf91af6885a78902"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83">iortho</a> = 3</td></tr>
-<tr class="memdesc:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Orthogonalization in GMRES.  <a href="namespaceshared__data.html#a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83">More...</a><br /></td></tr>
-<tr class="separator:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abc2e97d9043baaf076efe1e5034b7f84"><td class="memItemLeft" align="right" valign="top"><a id="abc2e97d9043baaf076efe1e5034b7f84"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#abc2e97d9043baaf076efe1e5034b7f84">hesspass_test</a> = -1</td></tr>
-<tr class="memdesc:abc2e97d9043baaf076efe1e5034b7f84"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dump block and data files for testing. <br /></td></tr>
-<tr class="separator:abc2e97d9043baaf076efe1e5034b7f84"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a361402311d7f8d1d5a71e3788015f4de"><td class="memItemLeft" align="right" valign="top"><a id="a361402311d7f8d1d5a71e3788015f4de"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a361402311d7f8d1d5a71e3788015f4de">in_hess_nfunct</a></td></tr>
-<tr class="memdesc:a361402311d7f8d1d5a71e3788015f4de"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a361402311d7f8d1d5a71e3788015f4de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="memItemLeft" align="right" valign="top"><a id="a4a4aba0c35915ced4f6a3cbcb2d7c13f"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4a4aba0c35915ced4f6a3cbcb2d7c13f">out_hess_nfunct</a></td></tr>
-<tr class="memdesc:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="memItemLeft" align="right" valign="top"><a id="a0661d0f76647ea92b0d6ea69d1bc32cc"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0661d0f76647ea92b0d6ea69d1bc32cc">mupar_test</a></td></tr>
-<tr class="memdesc:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="memItemLeft" align="right" valign="top"><a id="ae87ec7ee4ec725ed2d9c707a1396a2de"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ae87ec7ee4ec725ed2d9c707a1396a2de">fsq_total</a></td></tr>
-<tr class="memdesc:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 WITH column scaling. <br /></td></tr>
-<tr class="separator:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64a148b306f5aa1ed22767f78da22e37"><td class="memItemLeft" align="right" valign="top"><a id="a64a148b306f5aa1ed22767f78da22e37"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a64a148b306f5aa1ed22767f78da22e37">fsq_total1</a></td></tr>
-<tr class="memdesc:a64a148b306f5aa1ed22767f78da22e37"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 WITHOUT column scaling. <br /></td></tr>
-<tr class="separator:a64a148b306f5aa1ed22767f78da22e37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="memItemLeft" align="right" valign="top"><a id="ab4e75e1fc1ed72aef88d3d5fe0d80b2d"></a>
-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ab4e75e1fc1ed72aef88d3d5fe0d80b2d">xc</a></td></tr>
-<tr class="memdesc:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D array of Fourier mode displacement components. <br /></td></tr>
-<tr class="separator:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="memItemLeft" align="right" valign="top"><a id="abfb92ff7d52f4380ae1e5a0d633dee7e"></a>
-real(dp), dimension(:), allocatable, target&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#abfb92ff7d52f4380ae1e5a0d633dee7e">gc</a></td></tr>
-<tr class="memdesc:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of Fourier mode MHD force components <br /></td></tr>
-<tr class="separator:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3745e9a9c2c7c59a2245597b24189c7f"><td class="memItemLeft" align="right" valign="top"><a id="a3745e9a9c2c7c59a2245597b24189c7f"></a>
-real(dp), dimension(:), allocatable, target&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a3745e9a9c2c7c59a2245597b24189c7f">gc_sup</a></td></tr>
-<tr class="memdesc:a3745e9a9c2c7c59a2245597b24189c7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of Fourier mode MHD force components, FIXME Check if this is really needed. <br /></td></tr>
-<tr class="separator:a3745e9a9c2c7c59a2245597b24189c7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a836da8f25468546ad58fd57d97f185c3"><td class="memItemLeft" align="right" valign="top"><a id="a836da8f25468546ad58fd57d97f185c3"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a836da8f25468546ad58fd57d97f185c3">buv_res</a></td></tr>
-<tr class="memdesc:a836da8f25468546ad58fd57d97f185c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Resonant magnetic field perturbation. <br /></td></tr>
-<tr class="separator:a836da8f25468546ad58fd57d97f185c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="memItemLeft" align="right" valign="top"><a id="a78f1ef4a9077f3e374ba136f0477fcf5"></a>
-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a78f1ef4a9077f3e374ba136f0477fcf5">xc0</a></td></tr>
-<tr class="memdesc:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved fouier displacements. <br /></td></tr>
-<tr class="separator:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ab00894e982c488d364e27c139f6c6488">gc0</a></td></tr>
-<tr class="memdesc:ab00894e982c488d364e27c139f6c6488"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved fouier MHD forces. <br /></td></tr>
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-<tr class="memitem:ae1ff7bcb6fd97f19a43689b0b5d0f193"><td class="memItemLeft" align="right" valign="top">real(dp), dimension(:,:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ae1ff7bcb6fd97f19a43689b0b5d0f193">col_scale</a></td></tr>
-<tr class="memdesc:ae1ff7bcb6fd97f19a43689b0b5d0f193"><td class="mdescLeft">&#160;</td><td class="mdescRight">Column scaling factors.  <a href="namespaceshared__data.html#ae1ff7bcb6fd97f19a43689b0b5d0f193">More...</a><br /></td></tr>
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-<tr class="memitem:a3538e0d55f5ff09fc913b9152a5be1ac"><td class="memItemLeft" align="right" valign="top"><a id="a3538e0d55f5ff09fc913b9152a5be1ac"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a3538e0d55f5ff09fc913b9152a5be1ac">fsq_gmres</a></td></tr>
-<tr class="memdesc:a3538e0d55f5ff09fc913b9152a5be1ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for GMRES iterations. <br /></td></tr>
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-<tr class="memitem:ad065d7130cde806a941afb467546c88b"><td class="memItemLeft" align="right" valign="top"><a id="ad065d7130cde806a941afb467546c88b"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ad065d7130cde806a941afb467546c88b">fsq_lin</a></td></tr>
-<tr class="memdesc:ad065d7130cde806a941afb467546c88b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Linear |F|^2. <br /></td></tr>
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-<tr class="memitem:ad1644f3c84ff72f6f26e72243bfc2755"><td class="memItemLeft" align="right" valign="top"><a id="ad1644f3c84ff72f6f26e72243bfc2755"></a>
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-<tr class="memdesc:ad1644f3c84ff72f6f26e72243bfc2755"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a0e0914dbbdfbffd1a15e99db8f9fa6cb"><td class="memItemLeft" align="right" valign="top"><a id="a0e0914dbbdfbffd1a15e99db8f9fa6cb"></a>
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-<tr class="memitem:ac49c9f28243d9fa2303dd635cdbc4b5e"><td class="memItemLeft" align="right" valign="top"><a id="ac49c9f28243d9fa2303dd635cdbc4b5e"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac49c9f28243d9fa2303dd635cdbc4b5e">wtotal</a></td></tr>
-<tr class="memdesc:ac49c9f28243d9fa2303dd635cdbc4b5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">MHD energy sum of magnetic and thermal. <br /></td></tr>
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-<tr class="memitem:aea5a669987a6f60096701138b2c6694e"><td class="memItemLeft" align="right" valign="top"><a id="aea5a669987a6f60096701138b2c6694e"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aea5a669987a6f60096701138b2c6694e">wtotal0</a></td></tr>
-<tr class="memdesc:aea5a669987a6f60096701138b2c6694e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved MHD energy sum of magnetic and thermal. <br /></td></tr>
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-<tr class="memitem:a0a8d5133c94698b30e9aca6f4a7296e1"><td class="memItemLeft" align="right" valign="top"><a id="a0a8d5133c94698b30e9aca6f4a7296e1"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0a8d5133c94698b30e9aca6f4a7296e1">delta_t</a></td></tr>
-<tr class="memdesc:a0a8d5133c94698b30e9aca6f4a7296e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time step. <br /></td></tr>
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-<tr class="memitem:ac110d052f831d741b4308227cd276b9a"><td class="memItemLeft" align="right" valign="top"><a id="ac110d052f831d741b4308227cd276b9a"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac110d052f831d741b4308227cd276b9a">fsqvs</a></td></tr>
-<tr class="memdesc:ac110d052f831d741b4308227cd276b9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for s components. <br /></td></tr>
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-<tr class="memitem:a8c71aa69c189259760cc60182519e4b3"><td class="memItemLeft" align="right" valign="top"><a id="a8c71aa69c189259760cc60182519e4b3"></a>
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-<tr class="memdesc:a8c71aa69c189259760cc60182519e4b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for u components. <br /></td></tr>
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-<tr class="memitem:acbce8fab7171fae05234f81cf20654ff"><td class="memItemLeft" align="right" valign="top"><a id="acbce8fab7171fae05234f81cf20654ff"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#acbce8fab7171fae05234f81cf20654ff">fsqvv</a></td></tr>
-<tr class="memdesc:acbce8fab7171fae05234f81cf20654ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for v components. <br /></td></tr>
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-<tr class="memitem:a0961e17161781c386896ceb97b614fca"><td class="memItemLeft" align="right" valign="top"><a id="a0961e17161781c386896ceb97b614fca"></a>
-real(dp), dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0961e17161781c386896ceb97b614fca">ste</a></td></tr>
-<tr class="memdesc:a0961e17161781c386896ceb97b614fca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spectral Truncation RMS error,. <br /></td></tr>
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-<tr class="memitem:a32b30a1868d788df49ddf6ceb676fad8"><td class="memItemLeft" align="right" valign="top"><a id="a32b30a1868d788df49ddf6ceb676fad8"></a>
-real(dp), dimension(12)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a32b30a1868d788df49ddf6ceb676fad8">bs0</a></td></tr>
-<tr class="memdesc:a32b30a1868d788df49ddf6ceb676fad8"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a84e0aa451ddaa0a2fd1d0768fd81bed3"><td class="memItemLeft" align="right" valign="top"><a id="a84e0aa451ddaa0a2fd1d0768fd81bed3"></a>
-real(dp), dimension(12)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a84e0aa451ddaa0a2fd1d0768fd81bed3">bu0</a></td></tr>
-<tr class="memdesc:a84e0aa451ddaa0a2fd1d0768fd81bed3"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a5313ff897194d604ad7cac62ac45a9d9"><td class="memItemLeft" align="right" valign="top"><a id="a5313ff897194d604ad7cac62ac45a9d9"></a>
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-<tr class="memdesc:a5313ff897194d604ad7cac62ac45a9d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:aa7e55c7f97f403b98c7a08f89ef3bda9"><td class="memItemLeft" align="right" valign="top"><a id="aa7e55c7f97f403b98c7a08f89ef3bda9"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aa7e55c7f97f403b98c7a08f89ef3bda9">jsju_ratio_s</a></td></tr>
-<tr class="memdesc:aa7e55c7f97f403b98c7a08f89ef3bda9"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a48b33ca731e8daf55ba6805e1fe9bf1d"><td class="memItemLeft" align="right" valign="top"><a id="a48b33ca731e8daf55ba6805e1fe9bf1d"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a48b33ca731e8daf55ba6805e1fe9bf1d">bsbu_ratio_a</a></td></tr>
-<tr class="memdesc:a48b33ca731e8daf55ba6805e1fe9bf1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a48b33ca731e8daf55ba6805e1fe9bf1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5064d1d6c5e7caede14985f8cd91a03f"><td class="memItemLeft" align="right" valign="top"><a id="a5064d1d6c5e7caede14985f8cd91a03f"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a5064d1d6c5e7caede14985f8cd91a03f">jsju_ratio_a</a></td></tr>
-<tr class="memdesc:a5064d1d6c5e7caede14985f8cd91a03f"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a4112aeb220070930ade7679d1ed38a47"><td class="memItemLeft" align="right" valign="top"><a id="a4112aeb220070930ade7679d1ed38a47"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4112aeb220070930ade7679d1ed38a47">scale_s</a></td></tr>
-<tr class="memdesc:a4112aeb220070930ade7679d1ed38a47"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a194b5aff743f47131f8c3646adc35a2b"><td class="memItemLeft" align="right" valign="top"><a id="a194b5aff743f47131f8c3646adc35a2b"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a194b5aff743f47131f8c3646adc35a2b">scale_u</a></td></tr>
-<tr class="memdesc:a194b5aff743f47131f8c3646adc35a2b"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a194b5aff743f47131f8c3646adc35a2b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a586d2f5eed2fe8372726edd47133a6c8"><td class="memItemLeft" align="right" valign="top"><a id="a586d2f5eed2fe8372726edd47133a6c8"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a586d2f5eed2fe8372726edd47133a6c8">r1_i</a></td></tr>
-<tr class="memdesc:a586d2f5eed2fe8372726edd47133a6c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">R coordinates of the computational grid. <br /></td></tr>
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-<tr class="memitem:a500ed2566486b349325e42568464b380"><td class="memItemLeft" align="right" valign="top"><a id="a500ed2566486b349325e42568464b380"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a500ed2566486b349325e42568464b380">z1_i</a></td></tr>
-<tr class="memdesc:a500ed2566486b349325e42568464b380"><td class="mdescLeft">&#160;</td><td class="mdescRight">Z coordinates of the computational grid. <br /></td></tr>
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-<tr class="memitem:a8b7d4357fbc8cc9cc02c43e556bdeb35"><td class="memItemLeft" align="right" valign="top"><a id="a8b7d4357fbc8cc9cc02c43e556bdeb35"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a8b7d4357fbc8cc9cc02c43e556bdeb35">ru_i</a></td></tr>
-<tr class="memdesc:a8b7d4357fbc8cc9cc02c43e556bdeb35"><td class="mdescLeft">&#160;</td><td class="mdescRight">dR/du coordinates of the computational grid. <br /></td></tr>
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-<tr class="memitem:a56c92d12acfe358d29fa158c8260c7fa"><td class="memItemLeft" align="right" valign="top"><a id="a56c92d12acfe358d29fa158c8260c7fa"></a>
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-<tr class="memdesc:a56c92d12acfe358d29fa158c8260c7fa"><td class="mdescLeft">&#160;</td><td class="mdescRight">dZ/du coordinates of the computational grid. <br /></td></tr>
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-<tr class="memitem:a5707d6073bd62e84467c57edb0597368"><td class="memItemLeft" align="right" valign="top"><a id="a5707d6073bd62e84467c57edb0597368"></a>
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-<tr class="memitem:ac5ee632cf8cf72462c05efd2790d0e4d"><td class="memItemLeft" align="right" valign="top"><a id="ac5ee632cf8cf72462c05efd2790d0e4d"></a>
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-<tr class="separator:ac5ee632cf8cf72462c05efd2790d0e4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4014f588f274ad3d1fb1f715ae85de6d"><td class="memItemLeft" align="right" valign="top"><a id="a4014f588f274ad3d1fb1f715ae85de6d"></a>
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-<tr class="memdesc:a4014f588f274ad3d1fb1f715ae85de6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a87573fa1ab016ed2588da37ccca86835"><td class="memItemLeft" align="right" valign="top"><a id="a87573fa1ab016ed2588da37ccca86835"></a>
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-<tr class="memdesc:a87573fa1ab016ed2588da37ccca86835"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for stellator symmetric s component on full grid. <br /></td></tr>
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-<tr class="memdesc:a33becb95782782d593d234c2e6a086e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for non-stellator symmetric s component on full grid. <br /></td></tr>
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-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac0f10bb1709996044a49dbcc782bebde">asubumncf</a></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains variables and parameters used by many modules in SIESTA. </p>
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-<p>Column scaling factors. </p>
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-<p>Natural boundry condition flag. </p>
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-</div><!--header-->
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-
-<p>Subroutines and functions updating MHD forces and Wmhd.  
-<a href="namespaceshared__functions.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:acf4798ab31263a8a1958a5d83da6cadc"><td class="memItemLeft" align="right" valign="top"><a id="acf4798ab31263a8a1958a5d83da6cadc"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__functions.html#acf4798ab31263a8a1958a5d83da6cadc">funct_island</a></td></tr>
-<tr class="memdesc:acf4798ab31263a8a1958a5d83da6cadc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute forces for the perturbed state. <br /></td></tr>
-<tr class="separator:acf4798ab31263a8a1958a5d83da6cadc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d60e15b2b7801226da73a9a80a81ccb"><td class="memItemLeft" align="right" valign="top">real(dp) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__functions.html#a5d60e15b2b7801226da73a9a80a81ccb">getfsq</a> (nsmin, nsmax)</td></tr>
-<tr class="memdesc:a5d60e15b2b7801226da73a9a80a81ccb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the force residul.  <a href="namespaceshared__functions.html#a5d60e15b2b7801226da73a9a80a81ccb">More...</a><br /></td></tr>
-<tr class="separator:a5d60e15b2b7801226da73a9a80a81ccb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05eae32e4394a6b193bd3a7ce36d8c17"><td class="memItemLeft" align="right" valign="top">real(dp) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__functions.html#a05eae32e4394a6b193bd3a7ce36d8c17">getwmhd</a> (p)</td></tr>
-<tr class="memdesc:a05eae32e4394a6b193bd3a7ce36d8c17"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the perturbed MHD and Kinetic energy.  <a href="namespaceshared__functions.html#a05eae32e4394a6b193bd3a7ce36d8c17">More...</a><br /></td></tr>
-<tr class="separator:a05eae32e4394a6b193bd3a7ce36d8c17"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a61e8b9047c8d56be66ec7ff0c7ca38c4"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__functions.html#a61e8b9047c8d56be66ec7ff0c7ca38c4">linesearch</a> (xcmin, fsq_min)</td></tr>
-<tr class="memdesc:a61e8b9047c8d56be66ec7ff0c7ca38c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Perform line search along xc vector for minimum force residul.  <a href="namespaceshared__functions.html#a61e8b9047c8d56be66ec7ff0c7ca38c4">More...</a><br /></td></tr>
-<tr class="separator:a61e8b9047c8d56be66ec7ff0c7ca38c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0237166b3b544fd21ffcdbd70ed344e2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__functions.html#a0237166b3b544fd21ffcdbd70ed344e2">init_ptrs</a> (xtarget, s_ptr_sym, u_ptr_sym, v_ptr_sym,</td></tr>
-<tr class="memdesc:a0237166b3b544fd21ffcdbd70ed344e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes pointers for xc (displacement variable) and gc (force) residules.  <a href="namespaceshared__functions.html#a0237166b3b544fd21ffcdbd70ed344e2">More...</a><br /></td></tr>
-<tr class="separator:a0237166b3b544fd21ffcdbd70ed344e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Subroutines and functions updating MHD forces and Wmhd. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a5d60e15b2b7801226da73a9a80a81ccb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d60e15b2b7801226da73a9a80a81ccb">&#9670;&nbsp;</a></span>getfsq()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (dp) function shared_functions::getfsq </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmax</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Computes the force residul. </p>
-<p>The force residul is found by</p>
-<p>|F^2| = Fsub.Fsup = f_s*f^s + f_u*f^u + f_v*f^v (3)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>|F^2| </dd></dl>
-
-</div>
-</div>
-<a id="a05eae32e4394a6b193bd3a7ce36d8c17"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a05eae32e4394a6b193bd3a7ce36d8c17">&#9670;&nbsp;</a></span>getwmhd()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (dp) function shared_functions::getwmhd </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>p</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the perturbed MHD and Kinetic energy. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">p</td><td>Displacement vector. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The total stored energy. </dd></dl>
-
-</div>
-</div>
-<a id="a0237166b3b544fd21ffcdbd70ed344e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0237166b3b544fd21ffcdbd70ed344e2">&#9670;&nbsp;</a></span>init_ptrs()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine shared_functions::init_ptrs </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>xtarget</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>s_ptr_sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>u_ptr_sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>v_ptr_sym</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initializes pointers for xc (displacement variable) and gc (force) residules. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xtarget</td><td>State array to point to. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">s_ptr_sym</td><td>Stellarator symmetric term for the s component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">u_ptr_sym</td><td>Stellarator symmetric term for the u component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">v_ptr_sym</td><td>Stellarator symmetric term for the v component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">s_ptr_asym</td><td>Stellarator asymmetric term for the s component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">u_ptr_asym</td><td>Stellarator asymmetric term for the u component. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">v_ptr_asym</td><td>Stellarator asymmetric term for the v component. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a61e8b9047c8d56be66ec7ff0c7ca38c4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a61e8b9047c8d56be66ec7ff0c7ca38c4">&#9670;&nbsp;</a></span>linesearch()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine shared_functions::linesearch </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(neqs), intent(inout)&#160;</td>
-          <td class="paramname"><em>xcmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), intent(out)&#160;</td>
-          <td class="paramname"><em>fsq_min</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Perform line search along xc vector for minimum force residul. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">xcmin</td><td>Scaled displacement vector. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">fsq_min</td><td>Resdule at the minimum. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<div class="contents">
-
-<p>This file contains subroutines for updating half-grid magnetic fields.  
-<a href="namespacesiesta__bfield.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a90f25fe7e41fcc537d67390288294b87"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__bfield.html#a90f25fe7e41fcc537d67390288294b87">update_bfield</a> (l_add_res)</td></tr>
-<tr class="memdesc:a90f25fe7e41fcc537d67390288294b87"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update contravariant componets of the magnetic field.  <a href="namespacesiesta__bfield.html#a90f25fe7e41fcc537d67390288294b87">More...</a><br /></td></tr>
-<tr class="separator:a90f25fe7e41fcc537d67390288294b87"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0677342d8babf563e008e6604c5f2db"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__bfield.html#ac0677342d8babf563e008e6604c5f2db">faraday</a> (djbsupsmnh, djbsupumnh, djbsupvmnh,</td></tr>
-<tr class="memdesc:ac0677342d8babf563e008e6604c5f2db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use Faraday's law dB = -curl(E) to compute magnitic field perturbation.  <a href="namespacesiesta__bfield.html#ac0677342d8babf563e008e6604c5f2db">More...</a><br /></td></tr>
-<tr class="separator:ac0677342d8babf563e008e6604c5f2db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains subroutines for updating half-grid magnetic fields. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ac0677342d8babf563e008e6604c5f2db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0677342d8babf563e008e6604c5f2db">&#9670;&nbsp;</a></span>faraday()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_bfield::faraday </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>djbsupsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>djbsupumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>djbsupvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Use Faraday's law dB = -curl(E) to compute magnitic field perturbation. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">djbsupsmnh</td><td>Contravariant displacement in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">djbsupsmnh</td><td>Contravariant displacement in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">djbsupsmnh</td><td>Contravariant displacement in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">esubsijf</td><td>Covariant real space electric field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">esubuijf</td><td>Covariant real space electric field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">esubvijf</td><td>Covariant real space electric field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fourier parity control flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a90f25fe7e41fcc537d67390288294b87"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a90f25fe7e41fcc537d67390288294b87">&#9670;&nbsp;</a></span>update_bfield()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_bfield::update_bfield </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>l_add_res</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Update contravariant componets of the magnetic field. </p>
-<p>Advances half-mesh magnetic field components in nm space from time t to t + dt. Used to update values of bsup*mnh and bsupijh stored in the quantities module. Discretized version of Faraday's law</p>
-<p>dB/dt = -Curl(E) (1)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">l_add_res</td><td>Control flag to add resonant field. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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diff --git a/html/namespacesiesta__context.html b/html/namespacesiesta__context.html
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">siesta_context Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Defines the base class of the type <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>. This contains the state variables needed by SIESTA.  
-<a href="namespacesiesta__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacesiesta__context.html" title="Defines the base class of the type siesta_context_class. This contains the state variables needed by ...">siesta_context</a>. This contains a copy of every variable that is needed to define the SIESTA state.  <a href="structsiesta__context_1_1siesta__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7f8ee4d2a3fcdb11f20f6566ec8ad602"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__context.html#a7f8ee4d2a3fcdb11f20f6566ec8ad602">siesta_context_construct</a> (restart_file_name)</td></tr>
-<tr class="memdesc:a7f8ee4d2a3fcdb11f20f6566ec8ad602"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object.  <a href="namespacesiesta__context.html#a7f8ee4d2a3fcdb11f20f6566ec8ad602">More...</a><br /></td></tr>
-<tr class="separator:a7f8ee4d2a3fcdb11f20f6566ec8ad602"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a231ef8939c57cb53895ccde8612f84a7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__context.html#a231ef8939c57cb53895ccde8612f84a7">siesta_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:a231ef8939c57cb53895ccde8612f84a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object.  <a href="namespacesiesta__context.html#a231ef8939c57cb53895ccde8612f84a7">More...</a><br /></td></tr>
-<tr class="separator:a231ef8939c57cb53895ccde8612f84a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40e295959855746a2ad5a372f163119c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__context.html#a40e295959855746a2ad5a372f163119c">siesta_context_read</a> (this, restart_file_name)</td></tr>
-<tr class="memdesc:a40e295959855746a2ad5a372f163119c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a restart file.  <a href="namespacesiesta__context.html#a40e295959855746a2ad5a372f163119c">More...</a><br /></td></tr>
-<tr class="separator:a40e295959855746a2ad5a372f163119c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>. This contains the state variables needed by SIESTA. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a7f8ee4d2a3fcdb11f20f6566ec8ad602"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7f8ee4d2a3fcdb11f20f6566ec8ad602">&#9670;&nbsp;</a></span>siesta_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>) function, pointer siesta_context::siesta_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>restart_file_name</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file_name</td><td>Filename of the SIESTA restart file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a231ef8939c57cb53895ccde8612f84a7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a231ef8939c57cb53895ccde8612f84a7">&#9670;&nbsp;</a></span>siesta_context_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_context::siesta_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a40e295959855746a2ad5a372f163119c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a40e295959855746a2ad5a372f163119c">&#9670;&nbsp;</a></span>siesta_context_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_context::siesta_context_read </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>restart_file_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a restart file. </p>
-<p>Loads values from a new restart file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__context_1_1siesta__context__class.html">siesta_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file_name</td><td>Filename of the SIESTA restart file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/namespacesiesta__currents.html b/html/namespacesiesta__currents.html
deleted file mode 100644
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--- a/html/namespacesiesta__currents.html
+++ /dev/null
@@ -1,259 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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-<title>Stellarator-Tools: siesta_currents Module Reference</title>
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- <tr style="height: 56px;">
-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-     onmouseover="return searchBox.OnSearchSelectShow()"
-     onmouseout="return searchBox.OnSearchSelectHide()"
-     onkeydown="return searchBox.OnSearchSelectKey(event)">
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-<!-- iframe showing the search results (closed by default) -->
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-<iframe src="javascript:void(0)" frameborder="0" 
-        name="MSearchResults" id="MSearchResults">
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-</div><!-- top -->
-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">siesta_currents Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Takes the Curl(B) to return the contravariant current density. Contravariant components of the magnetic field must be converted to covariant components first.  
-<a href="namespacesiesta__currents.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1861d02b50c144fb6ba957bacbc6717b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__currents.html#a1861d02b50c144fb6ba957bacbc6717b">cv_currents</a> (bsupsijh, bsupuijh, bsupvijh,</td></tr>
-<tr class="memdesc:a1861d02b50c144fb6ba957bacbc6717b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute current density from Curl(B).  <a href="namespacesiesta__currents.html#a1861d02b50c144fb6ba957bacbc6717b">More...</a><br /></td></tr>
-<tr class="separator:a1861d02b50c144fb6ba957bacbc6717b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a72cc0d04e7475e53379e6a87d7e246d4"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__currents.html#a72cc0d04e7475e53379e6a87d7e246d4">curlb</a> (ksupsmnf, ksupumnf, ksupvmnf,</td></tr>
-<tr class="memdesc:a72cc0d04e7475e53379e6a87d7e246d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute fourier components of contravariant currents on full radial grid.  <a href="namespacesiesta__currents.html#a72cc0d04e7475e53379e6a87d7e246d4">More...</a><br /></td></tr>
-<tr class="separator:a72cc0d04e7475e53379e6a87d7e246d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16290445ab1661aa846b1ad873c4c7d6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__currents.html#a16290445ab1661aa846b1ad873c4c7d6">getcv</a> (ksupsmnf, ksupumnf, ksupvmnf,</td></tr>
-<tr class="memdesc:a16290445ab1661aa846b1ad873c4c7d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Transform full grid contravariant currents to real space.  <a href="namespacesiesta__currents.html#a16290445ab1661aa846b1ad873c4c7d6">More...</a><br /></td></tr>
-<tr class="separator:a16290445ab1661aa846b1ad873c4c7d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Takes the Curl(B) to return the contravariant current density. Contravariant components of the magnetic field must be converted to covariant components first. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a72cc0d04e7475e53379e6a87d7e246d4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a72cc0d04e7475e53379e6a87d7e246d4">&#9670;&nbsp;</a></span>curlb()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_currents::curlb </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>ksupsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>ksupumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>ksupvmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute fourier components of contravariant currents on full radial grid. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupsmnf</td><td>Contravarant s component of the current with jacobian. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupumnf</td><td>Contravarant u component of the current with jacobian. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupvmnf</td><td>Contravarant v component of the current with jacobian. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsijh</td><td>Covariant s component of the magnetic field. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubuijh</td><td>Covariant u component of the magnetic field. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">bsubvijh</td><td>Covariant v component of the magnetic field. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">bs_filter</td><td></td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">bu_filter</td><td></td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">bv_filter</td><td></td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">edge_cur</td><td>Edge current. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">jsju_ratio</td><td>Ratio of &lt;K^s + r12*K^u&gt;/&lt;K^s - r12*K^u&gt;. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Parity flag for the fouier components. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lcurr</td><td>UNKNOWN </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1861d02b50c144fb6ba957bacbc6717b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1861d02b50c144fb6ba957bacbc6717b">&#9670;&nbsp;</a></span>cv_currents()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_currents::cv_currents </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupsijh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupuijh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupvijh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute current density from Curl(B). </p>
-<p>Current density K is defined as</p>
-<p>K = Curl(B)/mu0 (1)</p>
-<p>In curvilinear coordinates this becomes</p>
-<p>K^s = 1/sqrt(g)(dB_v/du - dB_u/dv) (2a)</p>
-<p>K^u = 1/sqrt(g)(dB_s/dv - dB_v/ds) (2b)</p>
-<p>K^v = 1/sqrt(g)(dB_u/ds - dB_s/du) (2c)</p>
-<p>where sqrt(g) is the coordinate system Jacobian. Since there are derivatives with respect to s, these routines take the half grid values as input. The contravariant current computed will be on the full grid. These routines also output currents in real space. Note the computed Kmn are [sqrt(g)*K]mn with the embedded jacobian factor.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupsijh</td><td>B^s on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupuijh</td><td>B^u on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupvijh</td><td>B^v on the half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupsijf</td><td>K^s on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupuijf</td><td>K^u on the full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupvijf</td><td>K^v on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lmagen</td><td>Logical controlling calc of magnetic energy wb. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">lcurr</td><td>UNKNOWN </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a16290445ab1661aa846b1ad873c4c7d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16290445ab1661aa846b1ad873c4c7d6">&#9670;&nbsp;</a></span>getcv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_currents::getcv </td>
-          <td>(</td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>ksupsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>ksupumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>ksupvmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Transform full grid contravariant currents to real space. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupsmnf</td><td>Contravariant fourier current in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupumnf</td><td>Contravariant fourier current in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupvmnf</td><td>Contravariant fourier current in the v direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupsmnf</td><td>Contravariant real space current in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupumnf</td><td>Contravariant real space current in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">ksupvmnf</td><td>Contravariant real space current in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Partity flag fourier components. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<p>Defines the base class of the type <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>. This module contains all the code necessary to interface V3FIT with SIESTA.  
-<a href="namespacesiesta__equilibrium.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacesiesta__equilibrium.html" title="Defines the base class of the type siesta_class. This module contains all the code necessary to inter...">siesta_equilibrium</a>.  <a href="structsiesta__equilibrium_1_1siesta__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:aa03917edd53b3948f4e8244f8a7f751e"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa03917edd53b3948f4e8244f8a7f751e">siesta_construct</a> (file_name, restart_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, vmec_namelist, wout_file_name, force_solve)</td></tr>
-<tr class="memdesc:aa03917edd53b3948f4e8244f8a7f751e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object.  <a href="namespacesiesta__equilibrium.html#aa03917edd53b3948f4e8244f8a7f751e">More...</a><br /></td></tr>
-<tr class="separator:aa03917edd53b3948f4e8244f8a7f751e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32d246bc60798c59b64f68e06a74c236"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a32d246bc60798c59b64f68e06a74c236">siesta_destruct</a> (this)</td></tr>
-<tr class="memdesc:a32d246bc60798c59b64f68e06a74c236"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object.  <a href="namespacesiesta__equilibrium.html#a32d246bc60798c59b64f68e06a74c236">More...</a><br /></td></tr>
-<tr class="separator:a32d246bc60798c59b64f68e06a74c236"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">siesta_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">More...</a><br /></td></tr>
-<tr class="separator:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a77a4b6ce278dd903391c0844177c3b1c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a77a4b6ce278dd903391c0844177c3b1c">siesta_set_magnetic_cache_response</a> (this, response_object, state_flags)</td></tr>
-<tr class="memdesc:a77a4b6ce278dd903391c0844177c3b1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache for plasma response.  <a href="namespacesiesta__equilibrium.html#a77a4b6ce278dd903391c0844177c3b1c">More...</a><br /></td></tr>
-<tr class="separator:a77a4b6ce278dd903391c0844177c3b1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">siesta_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">More...</a><br /></td></tr>
-<tr class="separator:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeacc50357fd0c9adb56459a920dbd7b0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aeacc50357fd0c9adb56459a920dbd7b0">siesta_set_magnetic_cache_calc</a> (this)</td></tr>
-<tr class="memdesc:aeacc50357fd0c9adb56459a920dbd7b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache.  <a href="namespacesiesta__equilibrium.html#aeacc50357fd0c9adb56459a920dbd7b0">More...</a><br /></td></tr>
-<tr class="separator:aeacc50357fd0c9adb56459a920dbd7b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae5a15e82b88abb835199195da719b0be"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ae5a15e82b88abb835199195da719b0be">siesta_get_type</a> (this)</td></tr>
-<tr class="memdesc:ae5a15e82b88abb835199195da719b0be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the equilibrium type.  <a href="namespacesiesta__equilibrium.html#ae5a15e82b88abb835199195da719b0be">More...</a><br /></td></tr>
-<tr class="separator:ae5a15e82b88abb835199195da719b0be"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a54de6feb8b13ad7c925dc68bb9c1a4f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3">More...</a><br /></td></tr>
-<tr class="separator:a54de6feb8b13ad7c925dc68bb9c1a4f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff380751c52f470e900fb99bde7d5e60"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">siesta_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:aff380751c52f470e900fb99bde7d5e60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction siesta parameter.  <a href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">More...</a><br /></td></tr>
-<tr class="separator:aff380751c52f470e900fb99bde7d5e60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">siesta_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the name of a reconstruction siesta parameter.  <a href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">More...</a><br /></td></tr>
-<tr class="separator:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a448d412d29e7703ff89562bd5e3e54a8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8">siesta_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a448d412d29e7703ff89562bd5e3e54a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8">More...</a><br /></td></tr>
-<tr class="separator:a448d412d29e7703ff89562bd5e3e54a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63a68789cb55a6459cd96a016c8eda24"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24">siesta_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a63a68789cb55a6459cd96a016c8eda24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24">More...</a><br /></td></tr>
-<tr class="separator:a63a68789cb55a6459cd96a016c8eda24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad68bd4d3c819bafd069caa2bb6ed6d85">siesta_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacesiesta__equilibrium.html#ad68bd4d3c819bafd069caa2bb6ed6d85">More...</a><br /></td></tr>
-<tr class="separator:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab9d801f89b6ac53588c95898b2db119d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ab9d801f89b6ac53588c95898b2db119d">siesta_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:ab9d801f89b6ac53588c95898b2db119d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#ab9d801f89b6ac53588c95898b2db119d">More...</a><br /></td></tr>
-<tr class="separator:ab9d801f89b6ac53588c95898b2db119d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a">siesta_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a">More...</a><br /></td></tr>
-<tr class="separator:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a56e632399cfc3288b335767ed08d1ea4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4">siesta_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a56e632399cfc3288b335767ed08d1ea4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4">More...</a><br /></td></tr>
-<tr class="separator:a56e632399cfc3288b335767ed08d1ea4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">siesta_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">More...</a><br /></td></tr>
-<tr class="separator:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a363671f9a484fec5eaafa6dc4dddc927"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a363671f9a484fec5eaafa6dc4dddc927">siesta_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a363671f9a484fec5eaafa6dc4dddc927"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a363671f9a484fec5eaafa6dc4dddc927">More...</a><br /></td></tr>
-<tr class="separator:a363671f9a484fec5eaafa6dc4dddc927"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60a0c3b99f3ebabcb67039e76bb6bbb4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a60a0c3b99f3ebabcb67039e76bb6bbb4">siesta_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a60a0c3b99f3ebabcb67039e76bb6bbb4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#a60a0c3b99f3ebabcb67039e76bb6bbb4">More...</a><br /></td></tr>
-<tr class="separator:a60a0c3b99f3ebabcb67039e76bb6bbb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6205bad364c1f4c8082dcdf9393314c2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2">siesta_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a6205bad364c1f4c8082dcdf9393314c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2">More...</a><br /></td></tr>
-<tr class="separator:a6205bad364c1f4c8082dcdf9393314c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a428711cef00c9eaba9d9a54d6ba82118"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">siesta_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a428711cef00c9eaba9d9a54d6ba82118"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">More...</a><br /></td></tr>
-<tr class="separator:a428711cef00c9eaba9d9a54d6ba82118"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">siesta_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">More...</a><br /></td></tr>
-<tr class="separator:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef">siesta_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef">More...</a><br /></td></tr>
-<tr class="separator:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6">siesta_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6">More...</a><br /></td></tr>
-<tr class="separator:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa10053169557919b41ae9bd542d668d1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">siesta_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:aa10053169557919b41ae9bd542d668d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">More...</a><br /></td></tr>
-<tr class="separator:aa10053169557919b41ae9bd542d668d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a001556a88f398acce1ee5e78aa76de7b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">siesta_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:a001556a88f398acce1ee5e78aa76de7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">More...</a><br /></td></tr>
-<tr class="separator:a001556a88f398acce1ee5e78aa76de7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa2d312ef8b79ab3d3a65add7e854b796"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">siesta_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:aa2d312ef8b79ab3d3a65add7e854b796"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">More...</a><br /></td></tr>
-<tr class="separator:aa2d312ef8b79ab3d3a65add7e854b796"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2eccdc619618a32b1be98be0397689ab"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">siesta_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a2eccdc619618a32b1be98be0397689ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">More...</a><br /></td></tr>
-<tr class="separator:a2eccdc619618a32b1be98be0397689ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0cdd17a4604dc78a951681eb26b7242b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">siesta_get_p_flux</a> (this, flux, normalize)</td></tr>
-<tr class="memdesc:a0cdd17a4604dc78a951681eb26b7242b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a flux position.  <a href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">More...</a><br /></td></tr>
-<tr class="separator:a0cdd17a4604dc78a951681eb26b7242b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a580d79b630d31f3b072075e968173a8b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a580d79b630d31f3b072075e968173a8b">siesta_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a580d79b630d31f3b072075e968173a8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespacesiesta__equilibrium.html#a580d79b630d31f3b072075e968173a8b">More...</a><br /></td></tr>
-<tr class="separator:a580d79b630d31f3b072075e968173a8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a83d2f3344c9c4744e68a556b45d41f4b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a83d2f3344c9c4744e68a556b45d41f4b">siesta_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a83d2f3344c9c4744e68a556b45d41f4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacesiesta__equilibrium.html#a83d2f3344c9c4744e68a556b45d41f4b">More...</a><br /></td></tr>
-<tr class="separator:a83d2f3344c9c4744e68a556b45d41f4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0b30d0214b96e71293af9af5094de36"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">siesta_get_suv</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ac0b30d0214b96e71293af9af5094de36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets siesta s value at position.  <a href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">More...</a><br /></td></tr>
-<tr class="separator:ac0b30d0214b96e71293af9af5094de36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">siesta_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">More...</a><br /></td></tr>
-<tr class="separator:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49">siesta_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49">More...</a><br /></td></tr>
-<tr class="separator:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a5d5fbcaffe1d49ed291648ecc24d1259">siesta_get_int_b_plasma</a> (this, flux)</td></tr>
-<tr class="memdesc:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get internal plasma magnetic field.  <a href="namespacesiesta__equilibrium.html#a5d5fbcaffe1d49ed291648ecc24d1259">More...</a><br /></td></tr>
-<tr class="separator:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388">siesta_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388">More...</a><br /></td></tr>
-<tr class="separator:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73fb404a24d6dd1755f6847dd98ce0be"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">siesta_is_1d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a73fb404a24d6dd1755f6847dd98ce0be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 1d array.  <a href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">More...</a><br /></td></tr>
-<tr class="separator:a73fb404a24d6dd1755f6847dd98ce0be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a513834604de744b1779b4dc803efc630"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">siesta_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:a513834604de744b1779b4dc803efc630"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">More...</a><br /></td></tr>
-<tr class="separator:a513834604de744b1779b4dc803efc630"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa002c0e73f884fb2a1a3a2e11854b4c2">siesta_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the siesta equilibrium.  <a href="namespacesiesta__equilibrium.html#aa002c0e73f884fb2a1a3a2e11854b4c2">More...</a><br /></td></tr>
-<tr class="separator:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a14a150afd6c526771bbde5237d53d72b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">siesta_save_state</a> (this)</td></tr>
-<tr class="memdesc:a14a150afd6c526771bbde5237d53d72b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">More...</a><br /></td></tr>
-<tr class="separator:a14a150afd6c526771bbde5237d53d72b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e5961578d443ce3e3e13ae34f41ae56"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">siesta_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a0e5961578d443ce3e3e13ae34f41ae56"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">More...</a><br /></td></tr>
-<tr class="separator:a0e5961578d443ce3e3e13ae34f41ae56"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aecadf78aa6839a8fa8e066b11cd3f547"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">siesta_write</a> (this, iou)</td></tr>
-<tr class="memdesc:aecadf78aa6839a8fa8e066b11cd3f547"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">More...</a><br /></td></tr>
-<tr class="separator:aecadf78aa6839a8fa8e066b11cd3f547"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0551767a732b51891984375ed98b08d3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">siesta_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a0551767a732b51891984375ed98b08d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the current valid input.  <a href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">More...</a><br /></td></tr>
-<tr class="separator:a0551767a732b51891984375ed98b08d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40383ec407420d91a3aed6c13c7bbe33"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">siesta_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a40383ec407420d91a3aed6c13c7bbe33"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the siesta state to children.  <a href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">More...</a><br /></td></tr>
-<tr class="separator:a40383ec407420d91a3aed6c13c7bbe33"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af28819457f5a29e912480ed6dd558e82"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">siesta_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:af28819457f5a29e912480ed6dd558e82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child siesta state to the parent.  <a href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">More...</a><br /></td></tr>
-<tr class="separator:af28819457f5a29e912480ed6dd558e82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c553c755a447272f1e5634e7b9cf477"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">siesta_to_vmec_s</a> (s)</td></tr>
-<tr class="memdesc:a3c553c755a447272f1e5634e7b9cf477"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map the siesta s to the vmec s.  <a href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">More...</a><br /></td></tr>
-<tr class="separator:a3c553c755a447272f1e5634e7b9cf477"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">siesta_to_siesta_s</a> (s)</td></tr>
-<tr class="memdesc:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map the vmec s to the siesta s.  <a href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">More...</a><br /></td></tr>
-<tr class="separator:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a47aea8cfcb70b39596d19b886868b2ab"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a47aea8cfcb70b39596d19b886868b2ab">siesta_to_i_vmec</a> (s)</td></tr>
-<tr class="memdesc:a47aea8cfcb70b39596d19b886868b2ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Find the vmec s index.  <a href="namespacesiesta__equilibrium.html#a47aea8cfcb70b39596d19b886868b2ab">More...</a><br /></td></tr>
-<tr class="separator:a47aea8cfcb70b39596d19b886868b2ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a432010063648140fa8fd9d7e1ede2b84"><td class="memItemLeft" align="right" valign="top">pure integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a432010063648140fa8fd9d7e1ede2b84">siesta_to_i_vmec_low</a> (s)</td></tr>
-<tr class="memdesc:a432010063648140fa8fd9d7e1ede2b84"><td class="mdescLeft">&#160;</td><td class="mdescRight">Find the lower vmec s index.  <a href="namespacesiesta__equilibrium.html#a432010063648140fa8fd9d7e1ede2b84">More...</a><br /></td></tr>
-<tr class="separator:a432010063648140fa8fd9d7e1ede2b84"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8486d2a9e57e0bd50fde6cfe47d58574"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a8486d2a9e57e0bd50fde6cfe47d58574">siesta_to_w_vmec_low</a> (s, ilow)</td></tr>
-<tr class="memdesc:a8486d2a9e57e0bd50fde6cfe47d58574"><td class="mdescLeft">&#160;</td><td class="mdescRight">Find the lower interplation weighting.  <a href="namespacesiesta__equilibrium.html#a8486d2a9e57e0bd50fde6cfe47d58574">More...</a><br /></td></tr>
-<tr class="separator:a8486d2a9e57e0bd50fde6cfe47d58574"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:af0ee35a1a4de414752e0d74fac846cf1"><td class="memItemLeft" align="right" valign="top"><a id="af0ee35a1a4de414752e0d74fac846cf1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#af0ee35a1a4de414752e0d74fac846cf1">siesta_helpert_id</a> = 82</td></tr>
-<tr class="memdesc:af0ee35a1a4de414752e0d74fac846cf1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Helical perturbation parameter. <br /></td></tr>
-<tr class="separator:af0ee35a1a4de414752e0d74fac846cf1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>. This module contains all the code necessary to interface V3FIT with SIESTA. </p>
-<dl class="section user"><dt>Super Class:</dt><dd><a class="el" href="namespaceequilibrium.html">equilibrium</a> </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aa03917edd53b3948f4e8244f8a7f751e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa03917edd53b3948f4e8244f8a7f751e">&#9670;&nbsp;</a></span>siesta_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>) function, pointer siesta_equilibrium::siesta_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>restart_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ne</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>te</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ti</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__pointer.html">pprofile_pointer</a>), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>sxrem</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>z_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>pol_rad_ratio</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>vmec_namelist</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object. Currently this is limited to just loading an already created restart file but in the future it will load initalize and load siesta as well.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_name</td><td>Filename of the siesta namelist input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">restart_file_name</td><td>Filename of the siesta restart file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne</td><td>pprofile_T for the electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te</td><td>pprofile_T for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti</td><td>pprofile_T for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem</td><td>pprofile_T for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_offset</td><td>Initial phi offset of the plasma relative to the diagnostics in radians. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_offset</td><td>Initial Z offset of the plasma relative to the machine center. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit to log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for SIESTA. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator pool for reconstruction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>An instance of a <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_namelist</td><td>Filename of the vmec namelist input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Filename of the vmec wout input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="aa002c0e73f884fb2a1a3a2e11854b4c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa002c0e73f884fb2a1a3a2e11854b4c2">&#9670;&nbsp;</a></span>siesta_converge()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function siesta_equilibrium::siesta_converge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>num_iter</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the siesta equilibrium. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">equilibrium::equilibrium_converge</a>. Solves the SIESTA equilibrium and loads the resulting wout file in preparation of computing modeled signals. If the vmec equilibrium needs updating, it solves that in addition.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">num_iter</td><td>Counter to track the number of iterations. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/Output unit of the runlog file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for siesta/vmec. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the convergece was sucessful and false otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a32d246bc60798c59b64f68e06a74c236"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a32d246bc60798c59b64f68e06a74c236">&#9670;&nbsp;</a></span>siesta_destruct()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a580d79b630d31f3b072075e968173a8b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a580d79b630d31f3b072075e968173a8b">&#9670;&nbsp;</a></span>siesta_get_b_vec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) siesta_equilibrium::siesta_get_b_vec </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the magnetic field vector at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_B_vec.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the magnetic field vector at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cyl</td><td>Flag that specifies if the bfield should be returned in cartesian or cylindical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The magnetic field vector at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ac12ae30f9bfa1641d5e4d31e559c0b49"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac12ae30f9bfa1641d5e4d31e559c0b49">&#9670;&nbsp;</a></span>siesta_get_ext_b_plasma()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) siesta_equilibrium::siesta_get_ext_b_plasma </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>position</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>axi_only</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external plasma magnetic field. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">equilibrium::equilibrium_get_ext_b_plasma</a>. The b field is returned in cyclindical coordinates. This function does not require shifting the plasma relative to the diagnostics. The plasma has already been shifted when computing the surface currents and prime position.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Position to compute the fields at in cylindrical coordinates. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">axi_only</td><td>Gives only the axisymmtric component of the magnetic field. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external field contributed by the plasma. </dd></dl>
-
-</div>
-</div>
-<a id="a448d412d29e7703ff89562bd5e3e54a8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a448d412d29e7703ff89562bd5e3e54a8">&#9670;&nbsp;</a></span>siesta_get_gp_ne_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_ne_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">equilibrium::equilibrium_get_gp_ne_pi</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a63a68789cb55a6459cd96a016c8eda24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a63a68789cb55a6459cd96a016c8eda24">&#9670;&nbsp;</a></span>siesta_get_gp_ne_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_ne_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">equilibrium::equilibrium_get_gp_ne_pp</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a62ed7117acc7cfde48ec0dbc3d8388ef"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a62ed7117acc7cfde48ec0dbc3d8388ef">&#9670;&nbsp;</a></span>siesta_get_gp_sxrem_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_sxrem_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium::equilibrium_get_gp_sxrem_pi</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="ad53bc0a2bb7b84357cf38b416f1b92f6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad53bc0a2bb7b84357cf38b416f1b92f6">&#9670;&nbsp;</a></span>siesta_get_gp_sxrem_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_sxrem_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium::equilibrium_get_gp_sxrem_pp</a>. If no soft x-ray emissivity profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="aa5bbea72e955a9b46a22a5d1c5e4324a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa5bbea72e955a9b46a22a5d1c5e4324a">&#9670;&nbsp;</a></span>siesta_get_gp_te_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_te_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium::equilibrium_get_gp_te_pi</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a56e632399cfc3288b335767ed08d1ea4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a56e632399cfc3288b335767ed08d1ea4">&#9670;&nbsp;</a></span>siesta_get_gp_te_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_te_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">equilibrium::equilibrium_get_gp_te_pp</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a60a0c3b99f3ebabcb67039e76bb6bbb4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a60a0c3b99f3ebabcb67039e76bb6bbb4">&#9670;&nbsp;</a></span>siesta_get_gp_ti_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_ti_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium::equilibrium_get_gp_ti_pi</a>. If no ion temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a6205bad364c1f4c8082dcdf9393314c2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6205bad364c1f4c8082dcdf9393314c2">&#9670;&nbsp;</a></span>siesta_get_gp_ti_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_gp_ti_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">equilibrium::equilibrium_get_gp_ti_pp</a>. If no ion temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a8fa4714e6f1b1e8ce7aaf7feec54e388"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8fa4714e6f1b1e8ce7aaf7feec54e388">&#9670;&nbsp;</a></span>siesta_get_grid_size()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function siesta_equilibrium::siesta_get_grid_size </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get radial grid size. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium::equilibrium_get_grid_size</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Size of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="a83d2f3344c9c4744e68a556b45d41f4b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a83d2f3344c9c4744e68a556b45d41f4b">&#9670;&nbsp;</a></span>siesta_get_int_b_dphi()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_int_b_dphi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the loop integrated magnetic field at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_Int_B_dphi. This computes Int[B*dl]</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>S position to integrate about. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>U angle to integrate about. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The loop integrated magnetic field at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a5d5fbcaffe1d49ed291648ecc24d1259"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d5fbcaffe1d49ed291648ecc24d1259">&#9670;&nbsp;</a></span>siesta_get_int_b_plasma()</h2>
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-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) siesta_equilibrium::siesta_get_int_b_plasma </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>flux</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get internal plasma magnetic field. </p>
-<p>The internal b field is returned in cyclindical coordinates. This function does not require shifting the plasma relative to the diagnostics. The plasma has already been shifted when converting to the flux surface position.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flux</td><td>Position to compute the fields at in cylindrical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The internal field. </dd></dl>
-
-</div>
-</div>
-<a id="ad68bd4d3c819bafd069caa2bb6ed6d85"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad68bd4d3c819bafd069caa2bb6ed6d85">&#9670;&nbsp;</a></span>siesta_get_ne_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_ne_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ne. If no density profile was created, return zero. Density is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ab9d801f89b6ac53588c95898b2db119d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab9d801f89b6ac53588c95898b2db119d">&#9670;&nbsp;</a></span>siesta_get_ne_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_ne_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a s, u=0, v=0 position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ne. If no density profile was created, return zero. Density is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at s, u=0, v=0. </dd></dl>
-
-</div>
-</div>
-<a id="aa2d312ef8b79ab3d3a65add7e854b796"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa2d312ef8b79ab3d3a65add7e854b796">&#9670;&nbsp;</a></span>siesta_get_p_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_p_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a0cdd17a4604dc78a951681eb26b7242b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0cdd17a4604dc78a951681eb26b7242b">&#9670;&nbsp;</a></span>siesta_get_p_flux()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_p_flux </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>flux</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a flux position. </p>
-<p>This method overrides equilibrium::equilibrium_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at flux. </dd></dl>
-
-</div>
-</div>
-<a id="a2eccdc619618a32b1be98be0397689ab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2eccdc619618a32b1be98be0397689ab">&#9670;&nbsp;</a></span>siesta_get_p_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_p_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a s, u=0, v=0 position. </p>
-<p>This method overrides equilibrium::equilibrium_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Cartesian position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a54de6feb8b13ad7c925dc68bb9c1a4f3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a54de6feb8b13ad7c925dc68bb9c1a4f3">&#9670;&nbsp;</a></span>siesta_get_param_id()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function siesta_equilibrium::siesta_get_param_id </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the id for a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium::equilibrium_get_param_id</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of a reconstruction parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The id for a reconstruction parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a9db07a52ad3c5ffdc311e9fb976cf29d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9db07a52ad3c5ffdc311e9fb976cf29d">&#9670;&nbsp;</a></span>siesta_get_param_name()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character(len=data_name_length) function siesta_equilibrium::siesta_get_param_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the name of a reconstruction siesta parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium::equilibrium_get_param_name</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="aff380751c52f470e900fb99bde7d5e60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aff380751c52f470e900fb99bde7d5e60">&#9670;&nbsp;</a></span>siesta_get_param_value()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_param_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of a reconstruction siesta parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium::equilibrium_get_param_value</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a5c60ae6d4eb59e160c920f2da2f605d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5c60ae6d4eb59e160c920f2da2f605d8">&#9670;&nbsp;</a></span>siesta_get_plasma_edge()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function siesta_equilibrium::siesta_get_plasma_edge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>z</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the r and z positions of the outer surface at a toroidal angle. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium::equilibrium_get_plasma_edge</a>.</p>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000007">Todo:</a></b></dt><dd>FIXME: The vmec boundary won't be the case for Free boundary siesta.</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>Toroidal angle to determine the outer surface at. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">r</td><td>The radial postions of the other surface in a single toroidal angle. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">z</td><td>The Z postions of the other surface in a single toroidal angle. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The number of elements in the r and z arrays. </dd></dl>
-
-</div>
-</div>
-<a id="ac0b30d0214b96e71293af9af5094de36"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0b30d0214b96e71293af9af5094de36">&#9670;&nbsp;</a></span>siesta_get_suv()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) siesta_equilibrium::siesta_get_suv </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets siesta s value at position. </p>
-<p>Converts from cartesian coordinates to siesta's flux coordinates. Unlike vmec where only the s position in flux surface space is needed, the full flux surface space potition is needed here.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the s position at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The suv position at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="aa10053169557919b41ae9bd542d668d1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa10053169557919b41ae9bd542d668d1">&#9670;&nbsp;</a></span>siesta_get_sxrem_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_sxrem_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_sxrem. If no soft x-ray emissivity profile was created, return zero. Soft x-ray emissivity is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a001556a88f398acce1ee5e78aa76de7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a001556a88f398acce1ee5e78aa76de7b">&#9670;&nbsp;</a></span>siesta_get_sxrem_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_sxrem_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a s, u=0, v=0 position. </p>
-<p>This method overrides equilibrium::equilibrium_get_sxrem. If no soft x-ray emissivity profile was created, return zero. Soft x-ray emissivity is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at s, u=0, v=0. </dd></dl>
-
-</div>
-</div>
-<a id="a4a8d2307b72ed538168ed75c6cfe8c05"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a8d2307b72ed538168ed75c6cfe8c05">&#9670;&nbsp;</a></span>siesta_get_te_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_te_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_te. If no electron temperature profile was created, return zero. Electron temperature is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a363671f9a484fec5eaafa6dc4dddc927"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a363671f9a484fec5eaafa6dc4dddc927">&#9670;&nbsp;</a></span>siesta_get_te_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_te_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a s, u=0, v=0 position. </p>
-<p>This method overrides equilibrium::equilibrium_get_te. If no electron temperature profile was created, return zero. Electron temperature is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at s, u=0, v=0. </dd></dl>
-
-</div>
-</div>
-<a id="a428711cef00c9eaba9d9a54d6ba82118"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a428711cef00c9eaba9d9a54d6ba82118">&#9670;&nbsp;</a></span>siesta_get_ti_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_ti_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ti. If no ion temperature profile was created, return zero. Ion temperature is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a12207edeb41cc4c4cae459d3c65d8b3d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a12207edeb41cc4c4cae459d3c65d8b3d">&#9670;&nbsp;</a></span>siesta_get_ti_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">real (rprec) function siesta_equilibrium::siesta_get_ti_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a s, u=0, v=0 position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ti. If no ion ion temperature profile was created, return zero. Ion temperature is defined by a mapping function of the pressure.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the ion density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at s, u=0, v=0. </dd></dl>
-
-</div>
-</div>
-<a id="ae5a15e82b88abb835199195da719b0be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae5a15e82b88abb835199195da719b0be">&#9670;&nbsp;</a></span>siesta_get_type()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function siesta_equilibrium::siesta_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the equilibrium type. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the signal type. </dd></dl>
-
-</div>
-</div>
-<a id="a73fb404a24d6dd1755f6847dd98ce0be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a73fb404a24d6dd1755f6847dd98ce0be">&#9670;&nbsp;</a></span>siesta_is_1d_array()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function siesta_equilibrium::siesta_is_1d_array </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a 1d array. </p>
-<p>This method overrides equilibrium::equilibrium_is_1d_array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a 1d array and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a513834604de744b1779b4dc803efc630"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a513834604de744b1779b4dc803efc630">&#9670;&nbsp;</a></span>siesta_is_recon_param()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function siesta_equilibrium::siesta_is_recon_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium::equilibrium_is_recon_param</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a reconstruction parameter and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a0e5961578d443ce3e3e13ae34f41ae56"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0e5961578d443ce3e3e13ae34f41ae56">&#9670;&nbsp;</a></span>siesta_reset_state()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_reset_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reset the internal state of the equilibrium. </p>
-<p>Copies the saved siesta state back to siesta. Also resets the vmec state.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a14a150afd6c526771bbde5237d53d72b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a14a150afd6c526771bbde5237d53d72b">&#9670;&nbsp;</a></span>siesta_save_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_save_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Save the internal state of the equilibrium. </p>
-<p>Saves the siesta state. Also saves the vmec state.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aeacc50357fd0c9adb56459a920dbd7b0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeacc50357fd0c9adb56459a920dbd7b0">&#9670;&nbsp;</a></span>siesta_set_magnetic_cache_calc()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_set_magnetic_cache_calc </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set magnetic cache. </p>
-<p>After the equilibrium has been converged calculate the r, z, jr, jphi and jz on grid of s, u, v points.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad8bcfb2af6ccfc495a8f6d13065ac2a2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad8bcfb2af6ccfc495a8f6d13065ac2a2">&#9670;&nbsp;</a></span>siesta_set_magnetic_cache_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_set_magnetic_cache_point </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_axi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set magnetic cache initialy. </p>
-<p>This method overrides equilibrium::equilibrium_set_magnetic_cache. This allocates a sieste_magnetic_cache structure. Point measurements require no array allocations.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_axi</td><td>Magnetics can subtract off axisymmetric components. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a77a4b6ce278dd903391c0844177c3b1c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a77a4b6ce278dd903391c0844177c3b1c">&#9670;&nbsp;</a></span>siesta_set_magnetic_cache_response()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_set_magnetic_cache_response </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>response_object</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set magnetic cache for plasma response. </p>
-<p>This method overrides equilibrium::equilibrium_set_magnetic_cache. This allocates a vmec_magnetic_cache structure. Point measurements require no array allocations.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">response_object</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response::magnetic_response_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae8c13ca064ce474f2ac8fe15d3f74595"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae8c13ca064ce474f2ac8fe15d3f74595">&#9670;&nbsp;</a></span>siesta_set_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_set_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the value of a reconstruction equilibrium parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium::equilibrium_set_param</a>. When a SIESTA parameter is changed, propagate the changes to the SIESTA internal state and inform the caller that the equilibrium needs reconvergence.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af28819457f5a29e912480ed6dd558e82"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af28819457f5a29e912480ed6dd558e82">&#9670;&nbsp;</a></span>siesta_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child siesta state to the parent. </p>
-<p>Syncs data between a child and the parent process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Reconstruction rank to sync. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a40383ec407420d91a3aed6c13c7bbe33"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a40383ec407420d91a3aed6c13c7bbe33">&#9670;&nbsp;</a></span>siesta_sync_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_sync_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize the siesta state to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a47aea8cfcb70b39596d19b886868b2ab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a47aea8cfcb70b39596d19b886868b2ab">&#9670;&nbsp;</a></span>siesta_to_i_vmec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function siesta_equilibrium::siesta_to_i_vmec </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Find the vmec s index. </p>
-<p>Given a siesta s_s, find the index corresponding to the vmec grid. This is the non integer position coresponding to the absolute i position. The normalized vmec toroidal flux s_v corresponding to a vmec index i is.</p>
-<p>s_v = (i - 1)*ds_v (1)</p>
-<p>where radial grid spacing ds_v is</p>
-<p>ds_v = 1/(ns - 1) (2)</p>
-<p>Inverting equation (1), provides the index for a given s.</p>
-<p>i = s_v/ds_v + 1 (3)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>A position on the siesta radial grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Index of the closest radial grid point in vmec space. </dd></dl>
-
-</div>
-</div>
-<a id="a432010063648140fa8fd9d7e1ede2b84"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a432010063648140fa8fd9d7e1ede2b84">&#9670;&nbsp;</a></span>siesta_to_i_vmec_low()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure integer function siesta_equilibrium::siesta_to_i_vmec_low </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Find the lower vmec s index. </p>
-<p>Given a siesta s_s, round down to the nearist integer after mapping the siesta radial position to the absolute vmec index.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>A position on the siesta radial grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Index of the closest radial grid point in vmec space. </dd></dl>
-
-</div>
-</div>
-<a id="a4f94198ae29d9352b62dc5a9dd357b5a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4f94198ae29d9352b62dc5a9dd357b5a">&#9670;&nbsp;</a></span>siesta_to_siesta_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function siesta_equilibrium::siesta_to_siesta_s </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Map the vmec s to the siesta s. </p>
-<p>The siesta s_v is function of the vmec s_s using the forumla,</p>
-<p>s_s(s_v) = Sqrt(s_v) (1)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>A position on the siesta radial grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The siesta s for a given vmec s. </dd></dl>
-
-</div>
-</div>
-<a id="a3c553c755a447272f1e5634e7b9cf477"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3c553c755a447272f1e5634e7b9cf477">&#9670;&nbsp;</a></span>siesta_to_vmec_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function siesta_equilibrium::siesta_to_vmec_s </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Map the siesta s to the vmec s. </p>
-<p>The vmec s_v is function of the siesta s_s using the forumla,</p>
-<p>s_v(s_s) = s_s^2 (1)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>A position on the siesta radial grid. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The vmec s for a given siesta s. </dd></dl>
-
-</div>
-</div>
-<a id="a8486d2a9e57e0bd50fde6cfe47d58574"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8486d2a9e57e0bd50fde6cfe47d58574">&#9670;&nbsp;</a></span>siesta_to_w_vmec_low()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure real (rprec) function siesta_equilibrium::siesta_to_w_vmec_low </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ilow</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Find the lower interplation weighting. </p>
-<p>Given a siesta s_s and a the lower vmec index i, find how much the lower index is biased. When s_s corresponds to the lower index, it should be fully weighed.</p>
-<p>1 = m*i_low + b (1)</p>
-<p>When s_s corresponds to the lower index + 1, it should be weighted to zero.</p>
-<p>0 = m*(i_low + 1) + b (2)</p>
-<p>Solving this system of equations, maps the the s_s to the weight.</p>
-<p>w_low = m*i + b (3)</p>
-<p>The slope m and y intercept b are</p>
-<p>m = -1 (4)</p>
-<p>b = 1 + i_low (5)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>A position on the siesta radial grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ilow</td><td>Nearest lower index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Weight of the lower vmec index. </dd></dl>
-
-</div>
-</div>
-<a id="aecadf78aa6839a8fa8e066b11cd3f547"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aecadf78aa6839a8fa8e066b11cd3f547">&#9670;&nbsp;</a></span>siesta_write()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the equilibrium to an output file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium::equilibrium_write</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0551767a732b51891984375ed98b08d3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0551767a732b51891984375ed98b08d3">&#9670;&nbsp;</a></span>siesta_write_input()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_equilibrium::siesta_write_input </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the current valid input. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium::equilibrium_write_input</a>. The boundary and other fixed parameters do not get updated as the reconstruction progresses. Need to update them manually if in free boundary mode.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step number to append to input filename. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">siesta_error Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This module contains all the code needed to define an error.  
-<a href="namespacesiesta__error.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a614509d29da00390231959621a8b5bf7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a614509d29da00390231959621a8b5bf7">siesta_error_set_error</a> (error_code, message)</td></tr>
-<tr class="memdesc:a614509d29da00390231959621a8b5bf7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the bit flag for the error code.  <a href="namespacesiesta__error.html#a614509d29da00390231959621a8b5bf7">More...</a><br /></td></tr>
-<tr class="separator:a614509d29da00390231959621a8b5bf7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaad34e743c4fa943b9b4eb51d6495b78"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#aaad34e743c4fa943b9b4eb51d6495b78">siesta_error_clear_error</a> (error_code)</td></tr>
-<tr class="memdesc:aaad34e743c4fa943b9b4eb51d6495b78"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clears the bit flag for the error code.  <a href="namespacesiesta__error.html#aaad34e743c4fa943b9b4eb51d6495b78">More...</a><br /></td></tr>
-<tr class="separator:aaad34e743c4fa943b9b4eb51d6495b78"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae3eb69a2a789d27f676cd0b593ca702a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#ae3eb69a2a789d27f676cd0b593ca702a">siesta_error_clear_all</a></td></tr>
-<tr class="memdesc:ae3eb69a2a789d27f676cd0b593ca702a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clears all error code.  <a href="namespacesiesta__error.html#ae3eb69a2a789d27f676cd0b593ca702a">More...</a><br /></td></tr>
-<tr class="separator:ae3eb69a2a789d27f676cd0b593ca702a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a56e2d4f5b631ecba7f9c4d9acaaa154c"><td class="memItemLeft" align="right" valign="top"><a id="a56e2d4f5b631ecba7f9c4d9acaaa154c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a56e2d4f5b631ecba7f9c4d9acaaa154c">siesta_error_no_error</a> = 0</td></tr>
-<tr class="memdesc:a56e2d4f5b631ecba7f9c4d9acaaa154c"><td class="mdescLeft">&#160;</td><td class="mdescRight">All error flags off. <br /></td></tr>
-<tr class="separator:a56e2d4f5b631ecba7f9c4d9acaaa154c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a35228c3fe40da61fb3584f4f4f162cbd"><td class="memItemLeft" align="right" valign="top"><a id="a35228c3fe40da61fb3584f4f4f162cbd"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a35228c3fe40da61fb3584f4f4f162cbd">siesta_error_assert</a> = 0</td></tr>
-<tr class="memdesc:a35228c3fe40da61fb3584f4f4f162cbd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assertion Error. <br /></td></tr>
-<tr class="separator:a35228c3fe40da61fb3584f4f4f162cbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abb19bbba7e9f3b6a87c71f66ef8f3333"><td class="memItemLeft" align="right" valign="top"><a id="abb19bbba7e9f3b6a87c71f66ef8f3333"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#abb19bbba7e9f3b6a87c71f66ef8f3333">siesta_error_block_tri</a> = 1</td></tr>
-<tr class="memdesc:abb19bbba7e9f3b6a87c71f66ef8f3333"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assertion Error. <br /></td></tr>
-<tr class="separator:abb19bbba7e9f3b6a87c71f66ef8f3333"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2c154ba057be9cda2a774099a7a3b6bf"><td class="memItemLeft" align="right" valign="top"><a id="a2c154ba057be9cda2a774099a7a3b6bf"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a2c154ba057be9cda2a774099a7a3b6bf">siesta_error_general</a> = 2</td></tr>
-<tr class="memdesc:a2c154ba057be9cda2a774099a7a3b6bf"><td class="mdescLeft">&#160;</td><td class="mdescRight">General Error. <br /></td></tr>
-<tr class="separator:a2c154ba057be9cda2a774099a7a3b6bf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84ed209c12e59b84f3d800ec75ed5907"><td class="memItemLeft" align="right" valign="top"><a id="a84ed209c12e59b84f3d800ec75ed5907"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a84ed209c12e59b84f3d800ec75ed5907">siesta_error_allocation</a> = 3</td></tr>
-<tr class="memdesc:a84ed209c12e59b84f3d800ec75ed5907"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allocation Error. <br /></td></tr>
-<tr class="separator:a84ed209c12e59b84f3d800ec75ed5907"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa44d018664f5f09f8be2f820caa9c273"><td class="memItemLeft" align="right" valign="top"><a id="aa44d018664f5f09f8be2f820caa9c273"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#aa44d018664f5f09f8be2f820caa9c273">siesta_error_io</a> = 4</td></tr>
-<tr class="memdesc:aa44d018664f5f09f8be2f820caa9c273"><td class="mdescLeft">&#160;</td><td class="mdescRight">IO Error. <br /></td></tr>
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-<tr class="memitem:a964850b4df0216bdce9011a67169f15e"><td class="memItemLeft" align="right" valign="top"><a id="a964850b4df0216bdce9011a67169f15e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__error.html#a964850b4df0216bdce9011a67169f15e">siesta_error_param</a> = 5</td></tr>
-<tr class="memdesc:a964850b4df0216bdce9011a67169f15e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter error. <br /></td></tr>
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-<tr class="memitem:a83631ac5ada2707afd525046a27579e7"><td class="memItemLeft" align="right" valign="top"><a id="a83631ac5ada2707afd525046a27579e7"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><b>siesta_error_state</b> = <a class="el" href="namespacesiesta__error.html#a56e2d4f5b631ecba7f9c4d9acaaa154c">siesta_error_no_error</a></td></tr>
-<tr class="separator:a83631ac5ada2707afd525046a27579e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This module contains all the code needed to define an error. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ae3eb69a2a789d27f676cd0b593ca702a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae3eb69a2a789d27f676cd0b593ca702a">&#9670;&nbsp;</a></span>siesta_error_clear_all()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_error::siesta_error_clear_all</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Clears all error code. </p>
-<p>Sets all bit positions to zero. </p>
-
-</div>
-</div>
-<a id="aaad34e743c4fa943b9b4eb51d6495b78"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaad34e743c4fa943b9b4eb51d6495b78">&#9670;&nbsp;</a></span>siesta_error_clear_error()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_error::siesta_error_clear_error </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>error_code</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Clears the bit flag for the error code. </p>
-<p>Clears the bits for an error. Errors are defined by the module parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">error_code</td><td>Error code to set. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a614509d29da00390231959621a8b5bf7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a614509d29da00390231959621a8b5bf7">&#9670;&nbsp;</a></span>siesta_error_set_error()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_error::siesta_error_set_error </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>error_code</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>message</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the bit flag for the error code. </p>
-<p>Sets the bits for an error. Errors are defined by the module parameters. If this is reconstruction context, only report the error. Otherwise exit.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">error_code</td><td>Error code to set. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Message to report. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<div class="title">siesta_file Module Reference</div>  </div>
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-<p>Defines the base class of the type <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>. This contains the output of a siesta equilibrium.  
-<a href="namespacesiesta__file.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a siesta output.  <a href="structsiesta__file_1_1siesta__file__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a8290a7bf35bb2ef3655a035b509a45e4"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__file.html#a8290a7bf35bb2ef3655a035b509a45e4">siesta_file_construct</a> (siesta_file_name)</td></tr>
-<tr class="memdesc:a8290a7bf35bb2ef3655a035b509a45e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object.  <a href="namespacesiesta__file.html#a8290a7bf35bb2ef3655a035b509a45e4">More...</a><br /></td></tr>
-<tr class="separator:a8290a7bf35bb2ef3655a035b509a45e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abb25329497892f9eb1a9d6b196f6def3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__file.html#abb25329497892f9eb1a9d6b196f6def3">siesta_file_destruct</a> (this)</td></tr>
-<tr class="memdesc:abb25329497892f9eb1a9d6b196f6def3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object.  <a href="namespacesiesta__file.html#abb25329497892f9eb1a9d6b196f6def3">More...</a><br /></td></tr>
-<tr class="separator:abb25329497892f9eb1a9d6b196f6def3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ab3cf2198fcaab8c8955afbc9c1481995"><td class="memItemLeft" align="right" valign="top"><a id="ab3cf2198fcaab8c8955afbc9c1481995"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__file.html#ab3cf2198fcaab8c8955afbc9c1481995">siesta_lasym_flag</a> = 31</td></tr>
-<tr class="memdesc:ab3cf2198fcaab8c8955afbc9c1481995"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version number. <br /></td></tr>
-<tr class="separator:ab3cf2198fcaab8c8955afbc9c1481995"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>. This contains the output of a siesta equilibrium. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a8290a7bf35bb2ef3655a035b509a45e4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8290a7bf35bb2ef3655a035b509a45e4">&#9670;&nbsp;</a></span>siesta_file_construct()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>) function, pointer siesta_file::siesta_file_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>siesta_file_name</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object with an siesta restart file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>File name for vacuum fields. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="abb25329497892f9eb1a9d6b196f6def3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abb25329497892f9eb1a9d6b196f6def3">&#9670;&nbsp;</a></span>siesta_file_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_file::siesta_file_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__file_1_1siesta__file__class.html">siesta_file_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">siesta_force Module Reference</div>  </div>
-</div><!--header-->
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-
-<p>Compute the JxB - Grad(p) covariant force components. The plasma is in equilibrium when the force of the magnetic pressure balances the plasma pressure.  
-<a href="namespacesiesta__force.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a02e0516a91fb8f6abcd965a1c5037c6c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#a02e0516a91fb8f6abcd965a1c5037c6c">update_force</a></td></tr>
-<tr class="memdesc:a02e0516a91fb8f6abcd965a1c5037c6c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update MHD forces on full radial mesh.  <a href="namespacesiesta__force.html#a02e0516a91fb8f6abcd965a1c5037c6c">More...</a><br /></td></tr>
-<tr class="separator:a02e0516a91fb8f6abcd965a1c5037c6c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1fe9c159a52351787dcfbd135bd6dfd0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#a1fe9c159a52351787dcfbd135bd6dfd0">incfields</a> (jbsupsmnh, jbsupumnh, jbsupvmnh, jpmnh,</td></tr>
-<tr class="memdesc:a1fe9c159a52351787dcfbd135bd6dfd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute nonlinear or linearized contravariant magnetic field components and pressure in real space.  <a href="namespacesiesta__force.html#a1fe9c159a52351787dcfbd135bd6dfd0">More...</a><br /></td></tr>
-<tr class="separator:a1fe9c159a52351787dcfbd135bd6dfd0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a89d3a3e49372864458cb7f9aa83b7712"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#a89d3a3e49372864458cb7f9aa83b7712">lorentz</a> (bsupsijf, bsupuijf, bsupvijf,</td></tr>
-<tr class="memdesc:a89d3a3e49372864458cb7f9aa83b7712"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute covariant (sub) real-space components of the Lorentz K X B force.  <a href="namespacesiesta__force.html#a89d3a3e49372864458cb7f9aa83b7712">More...</a><br /></td></tr>
-<tr class="separator:a89d3a3e49372864458cb7f9aa83b7712"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad77a5b26b47f1b280cb4bfed48acd990"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#ad77a5b26b47f1b280cb4bfed48acd990">getmhdforce</a> (fsubsmnf, fsubumnf, fsubvmnf, pijh,</td></tr>
-<tr class="memdesc:ad77a5b26b47f1b280cb4bfed48acd990"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute covariant (sub) components of the MHD force J X B - grad(p).  <a href="namespacesiesta__force.html#ad77a5b26b47f1b280cb4bfed48acd990">More...</a><br /></td></tr>
-<tr class="separator:ad77a5b26b47f1b280cb4bfed48acd990"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac6a1cb0b71fc5b8575531f003b0d27e0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#ac6a1cb0b71fc5b8575531f003b0d27e0">initpardamping</a> (parscale, pardamp)</td></tr>
-<tr class="memdesc:ac6a1cb0b71fc5b8575531f003b0d27e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute scaling factors for parallel flow damping.  <a href="namespacesiesta__force.html#ac6a1cb0b71fc5b8575531f003b0d27e0">More...</a><br /></td></tr>
-<tr class="separator:ac6a1cb0b71fc5b8575531f003b0d27e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aba2bd1ea1649cf0a2c203ae7d33a5dc2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#aba2bd1ea1649cf0a2c203ae7d33a5dc2">get_force_harmonics</a> (pardamp, f_smnf, f_umnf, f_vmnf, pa</td></tr>
-<tr class="memdesc:aba2bd1ea1649cf0a2c203ae7d33a5dc2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Final computation of the MHD covariant Fourier force components.  <a href="namespacesiesta__force.html#aba2bd1ea1649cf0a2c203ae7d33a5dc2">More...</a><br /></td></tr>
-<tr class="separator:aba2bd1ea1649cf0a2c203ae7d33a5dc2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a50687337ce61a2a3abecf80ba92739"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__force.html#a4a50687337ce61a2a3abecf80ba92739">addpardamping</a> (pardamp, f_smnf, f_umnf, f_vmnf,</td></tr>
-<tr class="memdesc:a4a50687337ce61a2a3abecf80ba92739"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add parallel flow damping terms to forces (for Hessian calculation) to suppress null space at resonances.  <a href="namespacesiesta__force.html#a4a50687337ce61a2a3abecf80ba92739">More...</a><br /></td></tr>
-<tr class="separator:a4a50687337ce61a2a3abecf80ba92739"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Compute the JxB - Grad(p) covariant force components. The plasma is in equilibrium when the force of the magnetic pressure balances the plasma pressure. </p>
-<pre class="fragment">F = J X B - Grad(p) = 0                                               (1)
-</pre><p> where J is the current density. Updates for B (dB) and p (dp) were computed in <a class="el" href="namespacesiesta__bfield.html">siesta_bfield</a> and <a class="el" href="namespacesiesta__pressure.html">siesta_pressure</a>, respectively.</p>
-<p>B_i+1 = B_i + dB (2a)</p>
-<p>p_i+1 = p_i + dp (2b)</p>
-<p>Note that the magnetic field and pressure terms contain a Jacobian factor. Updated current density can be found from the updated magnetic field.</p>
-<p>J = Curl(B)/mu0 (3)</p>
-<p>Actual computation of the contravariant current components is implimented in cv_currents. The curvilinear coordinates, the J X B term becomes</p>
-<p>(J X B)_s = (K^u*B^v - K^v*B^u) (4a)</p>
-<p>(J X B)_u = (K^v*B^s - K^s*B^v) (4b)</p>
-<p>(J X B)_v = (K^s*B^u - K^u*B^s) (4c)</p>
-<p>where K^i = sqrt(g) J^i. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a4a50687337ce61a2a3abecf80ba92739"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a50687337ce61a2a3abecf80ba92739">&#9670;&nbsp;</a></span>addpardamping()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::addpardamping </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>pardamp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_smnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_umnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_vmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Add parallel flow damping terms to forces (for Hessian calculation) to suppress null space at resonances. </p>
-<p>Compute parallel (to B) damping force and add it to (linearized) forces to suppress null space in preconditioner.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_smnf</td><td>Covariant component of the mhd force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_umnf</td><td>Covariant component of the mhd force in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_vmnf</td><td>Covariant component of the mhd force in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jvsupsmnf</td><td>Contravariant displacement in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jvsupsmnf</td><td>Contravariant displacement in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jvsupsmnf</td><td>Contravariant displacement in the v direction. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aba2bd1ea1649cf0a2c203ae7d33a5dc2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aba2bd1ea1649cf0a2c203ae7d33a5dc2">&#9670;&nbsp;</a></span>get_force_harmonics()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::get_force_harmonics </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>pardamp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_smnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_umnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>f_vmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>pa</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Final computation of the MHD covariant Fourier force components. </p>
-<p>Add pressure gradients and parallel damping (to Hessian), and scale and print boundary values. See siesta_init::GetFields for boundary conditions.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">pardamp</td><td>Parallel damping. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_smnf</td><td>Covariant component of the mhd force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_umnf</td><td>Covariant component of the mhd force in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">f_vmnf</td><td>Covariant component of the mhd force in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity of the fourier components. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad77a5b26b47f1b280cb4bfed48acd990"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad77a5b26b47f1b280cb4bfed48acd990">&#9670;&nbsp;</a></span>getmhdforce()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::getmhdforce </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>fsubsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>fsubumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>fsubvmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>pijh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute covariant (sub) components of the MHD force J X B - grad(p). </p>
-<p>The MHD forces are sum of Lorentz and pressure gradient forces</p>
-<p>F = J X B - Grad(p) (1)</p>
-<p>where J is the plasma current density. In curvilinear coodinates, the forces components becomes</p>
-<p>F_s = (K^u*B^v - K^v*B^u) - dp/ds (2a)</p>
-<p>F_u = (K^v*B^s - K^s*B^v) - dp/du (2b)</p>
-<p>F_v = (K^s*B^u - K^u*B^s) - dp/dv (2c)</p>
-<p>where K^i = sqrt(g)*J^i . Note this routine works on one parity at a time. When l_linearize is true, calculate the perturbed Force only (Ignores F(xc=0) part). When l_linearize is false, calculate full non-linear force(F(xc=0) part only)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">fsubsmnf</td><td>Covariant force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">fsubumnf</td><td>Covariant force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">fsubvmnf</td><td>Covariant force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pijh</td><td>Real space pressure. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBsij</td><td>Covariant component of the lorentz force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBuij</td><td>Covariant component of the lorentz force in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBvij</td><td>Covariant component of the lorentz force in the v direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">pardamp</td><td>Parallel damping. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity of the fourier components. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1fe9c159a52351787dcfbd135bd6dfd0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1fe9c159a52351787dcfbd135bd6dfd0">&#9670;&nbsp;</a></span>incfields()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::incfields </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupvmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jpmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute nonlinear or linearized contravariant magnetic field components and pressure in real space. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupsmnh</td><td>Contravariant B field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupumnh</td><td>Contravariant B field in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupvmnh</td><td>Contravariant B field in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jpmnh</td><td>Pressure on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">djbsupsmnh</td><td>Contravariant B field perturbation in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">djbsupumnh</td><td>Contravariant B field perturbation in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">djbsupvmnh</td><td>Contravariant B field perturbation in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">djpmnh</td><td>Pressure perturbation. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">jbsupsijh</td><td>Real space contravariant B field in the s direction. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">jbsupuijh</td><td>Real space contravariant B field in the u !direction. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">jbsupvijh</td><td>Real space contravariant B field in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Fourier parity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac6a1cb0b71fc5b8575531f003b0d27e0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac6a1cb0b71fc5b8575531f003b0d27e0">&#9670;&nbsp;</a></span>initpardamping()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::initpardamping </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>parscale</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>pardamp</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute scaling factors for parallel flow damping. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">parscale</td><td>Scratch array. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">pardamp</td><td>Parallel damping. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a89d3a3e49372864458cb7f9aa83b7712"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a89d3a3e49372864458cb7f9aa83b7712">&#9670;&nbsp;</a></span>lorentz()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::lorentz </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupsijf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupuijf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>bsupvijf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute covariant (sub) real-space components of the Lorentz K X B force. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupsijf</td><td>Contravariant component of the B field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupuijf</td><td>Contravariant component of the B field in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsupvijf</td><td>Contravariant component of the B field in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupsijf</td><td>Contravariant component of the current in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupuijf</td><td>Contravariant component of the current in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ksupvijf</td><td>Contravariant component of the current in the v direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBsij</td><td>Covariant component of the lorentz force in the s direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBuij</td><td>Covariant component of the lorentz force in the u direction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">KxBvij</td><td>Covariant component of the lorentz force in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">fcomb</td><td>Control flag to sum the components with previous values. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a02e0516a91fb8f6abcd965a1c5037c6c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a02e0516a91fb8f6abcd965a1c5037c6c">&#9670;&nbsp;</a></span>update_force()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_force::update_force</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Update MHD forces on full radial mesh. </p>
-<p>Updates force using the advanced values of B and p obtained from calls to <a class="el" href="namespacesiesta__pressure.html#a7c4ad4ede03c93bc7e5ad31ccdfa9f50">siesta_pressure::update_pres</a> and <a class="el" href="namespacesiesta__bfield.html#a90f25fe7e41fcc537d67390288294b87">siesta_bfield::update_bfield</a> Update values of fsub*mn*f stored in quantities. Linearized force is</p>
-<p>Flin ~ delta_v</p>
-<p>has only the linear part. Not DC part and not non-linear. </p>
-
-</div>
-</div>
-</div><!-- contents -->
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<div class="title">siesta_namelist Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This file contains all the variables and maximum sizes of the inputs for a SIESTA namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs.  
-<a href="namespacesiesta__namelist.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a3b21b61be1715b54e98f9b9cef8dc068"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a3b21b61be1715b54e98f9b9cef8dc068">siesta_namelist_read</a> (namelist_file)</td></tr>
-<tr class="memdesc:a3b21b61be1715b54e98f9b9cef8dc068"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reads the namelist input file.  <a href="namespacesiesta__namelist.html#a3b21b61be1715b54e98f9b9cef8dc068">More...</a><br /></td></tr>
-<tr class="separator:a3b21b61be1715b54e98f9b9cef8dc068"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3337260f4eaa82a64058d6972453c294"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a3337260f4eaa82a64058d6972453c294">siesta_namelist_write</a> (namelist_file)</td></tr>
-<tr class="memdesc:a3337260f4eaa82a64058d6972453c294"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes the namelist input file.  <a href="namespacesiesta__namelist.html#a3337260f4eaa82a64058d6972453c294">More...</a><br /></td></tr>
-<tr class="separator:a3337260f4eaa82a64058d6972453c294"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ab3be64d14a4305d9a50b52011299b300"><td class="memItemLeft" align="right" valign="top"><a id="ab3be64d14a4305d9a50b52011299b300"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#ab3be64d14a4305d9a50b52011299b300">siesta_namelist_name_length</a> = 256</td></tr>
-<tr class="memdesc:ab3be64d14a4305d9a50b52011299b300"><td class="mdescLeft">&#160;</td><td class="mdescRight">Input string length. <br /></td></tr>
-<tr class="separator:ab3be64d14a4305d9a50b52011299b300"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a74f4a611349b2a1a425613c724b56519"><td class="memItemLeft" align="right" valign="top"><a id="a74f4a611349b2a1a425613c724b56519"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a74f4a611349b2a1a425613c724b56519">ladd_pert</a> = .TRUE.</td></tr>
-<tr class="memdesc:a74f4a611349b2a1a425613c724b56519"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use helical perturbation. <br /></td></tr>
-<tr class="separator:a74f4a611349b2a1a425613c724b56519"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad156dc8c98ae58ca02dc697f4f48cb41"><td class="memItemLeft" align="right" valign="top"><a id="ad156dc8c98ae58ca02dc697f4f48cb41"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#ad156dc8c98ae58ca02dc697f4f48cb41">lresistive</a> = .TRUE.</td></tr>
-<tr class="memdesc:ad156dc8c98ae58ca02dc697f4f48cb41"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use resistive perturbaton. <br /></td></tr>
-<tr class="separator:ad156dc8c98ae58ca02dc697f4f48cb41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33133507bba1231bc8ceaaa642281d27"><td class="memItemLeft" align="right" valign="top"><a id="a33133507bba1231bc8ceaaa642281d27"></a>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a0f0f3577ffa289377e6ae8d12ba7d68e">l_silo_output</a> = .FALSE.</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a83d92599194e6e14d6f17582ad93be35">l_silo3d</a> = .FALSE.</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a862817756335c5f140475c535775ae6b">l_output_alliter</a> = .FALSE.</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a9ce10cbbca6fbb1464e1b980af9fd4bd">l_vmec_uniform</a></td></tr>
-<tr class="memdesc:a9ce10cbbca6fbb1464e1b980af9fd4bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: Unknown. <br /></td></tr>
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-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a5c34fd50cada7045ae178a8fb1b2d259">eta_factor</a> = 1.E-2_dp</td></tr>
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-<tr class="memitem:adc41b9cb1681f385e9f1fe81126fcda4"><td class="memItemLeft" align="right" valign="top"><a id="adc41b9cb1681f385e9f1fe81126fcda4"></a>
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-<tr class="memitem:ab484920d7381a8323343d3c831d5d0c2"><td class="memItemLeft" align="right" valign="top"><a id="ab484920d7381a8323343d3c831d5d0c2"></a>
-real(dp), dimension(20)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#ab484920d7381a8323343d3c831d5d0c2">helpert</a> = 0.0</td></tr>
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-real(dp), dimension(20)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#ab97b075d3f746e9d9c4f81bf73eb977a">helperta</a> = 0.0</td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a68fde2dc4a7fc24cf54d81ec6d7ce1c9">nsin</a> = 101</td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a5db1f262e269d20f2589a8a9517c154a">nsin_ext</a> = 0</td></tr>
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-character(len=<a class="el" href="namespacesiesta__namelist.html#ab3be64d14a4305d9a50b52011299b300">siesta_namelist_name_length</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a4d9abc8eca8cb7ad4cbb8a0124cfdf42">ntor_type</a> = 'dense'</td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a0c32c591d47bf6261c66f521db2f9b13">mpolin</a> = 12</td></tr>
-<tr class="memdesc:a0c32c591d47bf6261c66f521db2f9b13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of poloidal modes. <br /></td></tr>
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-<tr class="memitem:a8d54dbdd3913d2009948fba9e41a19fb"><td class="memItemLeft" align="right" valign="top"><a id="a8d54dbdd3913d2009948fba9e41a19fb"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a8d54dbdd3913d2009948fba9e41a19fb">ntorin</a> = 3</td></tr>
-<tr class="memdesc:a8d54dbdd3913d2009948fba9e41a19fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of toroidal modes. <br /></td></tr>
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-<tr class="memitem:afdb40d9a582f32071bc4e4d5b3c932c5"><td class="memItemLeft" align="right" valign="top"><a id="afdb40d9a582f32071bc4e4d5b3c932c5"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#afdb40d9a582f32071bc4e4d5b3c932c5">nfpin</a> = 0</td></tr>
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-<tr class="memitem:a39a58bdae616e2d4dbb07be9348a1e37"><td class="memItemLeft" align="right" valign="top"><a id="a39a58bdae616e2d4dbb07be9348a1e37"></a>
-integer, dimension(-50:50)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a39a58bdae616e2d4dbb07be9348a1e37">ntor_modes</a></td></tr>
-<tr class="memdesc:a39a58bdae616e2d4dbb07be9348a1e37"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sparse toroidal modes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#aba3567b3968e6c263a69c930338dcbcc">nphis</a> = 2</td></tr>
-<tr class="memdesc:aba3567b3968e6c263a69c930338dcbcc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of cylindrical phi planes. <br /></td></tr>
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-<tr class="memitem:ad31194b302457af042767b2c89e32dcf"><td class="memItemLeft" align="right" valign="top"><a id="ad31194b302457af042767b2c89e32dcf"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#ad31194b302457af042767b2c89e32dcf">nrs</a> = 200</td></tr>
-<tr class="memdesc:ad31194b302457af042767b2c89e32dcf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of radial grid points. <br /></td></tr>
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-<tr class="memitem:aa2eec19be319194798166084c2801204"><td class="memItemLeft" align="right" valign="top"><a id="aa2eec19be319194798166084c2801204"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#aa2eec19be319194798166084c2801204">nzs</a> = 200</td></tr>
-<tr class="memdesc:aa2eec19be319194798166084c2801204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of vertical grid points. <br /></td></tr>
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-<tr class="memitem:a48bc8c3a9904f90c87655201c78b3d23"><td class="memItemLeft" align="right" valign="top"><a id="a48bc8c3a9904f90c87655201c78b3d23"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a48bc8c3a9904f90c87655201c78b3d23">nvs</a> = 150</td></tr>
-<tr class="memdesc:a48bc8c3a9904f90c87655201c78b3d23"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of flux space toroidal points. <br /></td></tr>
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-<tr class="memitem:aa611c16676737334b9607022cd032fb8"><td class="memItemLeft" align="right" valign="top"><a id="aa611c16676737334b9607022cd032fb8"></a>
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-<tr class="memdesc:aa611c16676737334b9607022cd032fb8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of flux space poloidal points. <br /></td></tr>
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-<tr class="memitem:a029be8c8fd1e187f0df0cc271c0b2752"><td class="memItemLeft" align="right" valign="top"><a id="a029be8c8fd1e187f0df0cc271c0b2752"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a029be8c8fd1e187f0df0cc271c0b2752">nss</a> = 100</td></tr>
-<tr class="memdesc:a029be8c8fd1e187f0df0cc271c0b2752"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of flux space radial points. <br /></td></tr>
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-<tr class="memitem:a21c9db52d45e79833d731b4be4bb346d"><td class="memItemLeft" align="right" valign="top"><a id="a21c9db52d45e79833d731b4be4bb346d"></a>
-character(len=<a class="el" href="namespacesiesta__namelist.html#ab3be64d14a4305d9a50b52011299b300">siesta_namelist_name_length</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a> = ''</td></tr>
-<tr class="memdesc:a21c9db52d45e79833d731b4be4bb346d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Filename of the VMEC woutfile. <br /></td></tr>
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-<tr class="memitem:afc6f7d08fed7c3d94ee39455ed79b02d"><td class="memItemLeft" align="right" valign="top"><a id="afc6f7d08fed7c3d94ee39455ed79b02d"></a>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains all the variables and maximum sizes of the inputs for a SIESTA namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. </p>
-<p><a class="el" href="siesta_namelist_sec.html">Namelist siesta_info definition</a></p>
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-<h2 class="memtitle"><span class="permalink"><a href="#a3b21b61be1715b54e98f9b9cef8dc068">&#9670;&nbsp;</a></span>siesta_namelist_read()</h2>
-
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-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
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-<p>Reads the namelist input file. </p>
-<p>Reads the namelist input file.</p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
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-<div class="memitem">
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-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
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-<p>Writes the namelist input file. </p>
-<p>Writes the namelist input file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
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-<div class="title">siesta_pressure Module Reference</div>  </div>
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-<p>Updates pressure.  
-<a href="namespacesiesta__pressure.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7c4ad4ede03c93bc7e5ad31ccdfa9f50"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__pressure.html#a7c4ad4ede03c93bc7e5ad31ccdfa9f50">update_pres</a></td></tr>
-<tr class="memdesc:a7c4ad4ede03c93bc7e5ad31ccdfa9f50"><td class="mdescLeft">&#160;</td><td class="mdescRight">advance pressure on the half radial grid from t to t + delta_t.  <a href="namespacesiesta__pressure.html#a7c4ad4ede03c93bc7e5ad31ccdfa9f50">More...</a><br /></td></tr>
-<tr class="separator:a7c4ad4ede03c93bc7e5ad31ccdfa9f50"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Updates pressure. </p>
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-<a id="a7c4ad4ede03c93bc7e5ad31ccdfa9f50"></a>
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-          <td class="memname">subroutine siesta_pressure::update_pres</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>advance pressure on the half radial grid from t to t + delta_t. </p>
-<p>Changes in pressure are governed by the continuity equation.</p>
-<p>dn/dt + Div(nv) = dn/dt + n*Div(v) + v.Grad(n) = 0 (1)</p>
-<p>where n is the density and v is the velocity. From the adiabatic principle,</p>
-<p>pV^gamma = Constant (2)</p>
-<p>where p is the pressure and V is the volume. From the ideal gas law V scales as V ~ 1/n. Using this equation (2) can be rewritten in terms of</p>
-<p>p/n^gamma = Constant (3)</p>
-<p>Putting equation (3) into equation (1), the continuty equation can be written in terms of the pressure.</p>
-<p>dp/dt + gamma*p*Div(v) + v.Grad(p) = 0 (4)</p>
-<p>Using the idenity</p>
-<p>Div(fA) = f*Div(A) + A.Grad(f) (5)</p>
-<p>equation (4) can be written as.</p>
-<p>dp/dt = (gamma - 1)v.Grad(p) - gamma*Div(pv) (6)</p>
-<p>This leads to equation (2.3) in Hirshman et. al. doi:10.1063/1.3597155. Expanding out equation (6) gives</p>
-<p>dp/dt = (gamma - 1)*(v^s*dp/ds + v^u*dp/du + v^v*dp/dv) (7)</p><ul>
-<li>gamma/J*(dJpv^s/ds + dJpv^u/du + dJpv^v/dv) </li>
-</ul>
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-
-<p>Defines the base class of the type <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>. This module contains all the code necessary to interface setup and run SIESTA.  
-<a href="namespacesiesta__run.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3de6a89dbe0332b6e36726df6446586a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c33afffa76a39261bbb967b49e31ffb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#a1c33afffa76a39261bbb967b49e31ffb">siesta_run_destruct</a> (this)</td></tr>
-<tr class="memdesc:a1c33afffa76a39261bbb967b49e31ffb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object.  <a href="namespacesiesta__run.html#a1c33afffa76a39261bbb967b49e31ffb">More...</a><br /></td></tr>
-<tr class="separator:a1c33afffa76a39261bbb967b49e31ffb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a39f2be7bdf0394de83c9d366dbd3edac"><td class="memItemLeft" align="right" valign="top">real(dp) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#a39f2be7bdf0394de83c9d366dbd3edac">siesta_run_get_1d</a> (this, param_name, index)</td></tr>
-<tr class="memdesc:a39f2be7bdf0394de83c9d366dbd3edac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get 1D parameter value.  <a href="namespacesiesta__run.html#a39f2be7bdf0394de83c9d366dbd3edac">More...</a><br /></td></tr>
-<tr class="separator:a39f2be7bdf0394de83c9d366dbd3edac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a34192c15f6cda422bdf260056fee9ddb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">siesta_run_converge</a> (this)</td></tr>
-<tr class="memdesc:a34192c15f6cda422bdf260056fee9ddb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the SIESTA equilibrium.  <a href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">More...</a><br /></td></tr>
-<tr class="separator:a34192c15f6cda422bdf260056fee9ddb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7d064142ea9b752edc46db8bf587326"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">siesta_run_sync</a> (this)</td></tr>
-<tr class="memdesc:aa7d064142ea9b752edc46db8bf587326"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync child equilibria.  <a href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">More...</a><br /></td></tr>
-<tr class="separator:aa7d064142ea9b752edc46db8bf587326"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Variables</h2></td></tr>
-<tr class="memitem:aa2d2bc4e99ec0e6793849e2bcbb30d4b"><td class="memItemLeft" align="right" valign="top"><a id="aa2d2bc4e99ec0e6793849e2bcbb30d4b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa2d2bc4e99ec0e6793849e2bcbb30d4b">siesta_run_control_clear</a> = 0</td></tr>
-<tr class="memdesc:aa2d2bc4e99ec0e6793849e2bcbb30d4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clear all control bits. <br /></td></tr>
-<tr class="separator:aa2d2bc4e99ec0e6793849e2bcbb30d4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3edbdc3a80b2a5c1e24606fc25eab448"><td class="memItemLeft" align="right" valign="top"><a id="a3edbdc3a80b2a5c1e24606fc25eab448"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#a3edbdc3a80b2a5c1e24606fc25eab448">siesta_run_control_mpi</a> = 1</td></tr>
-<tr class="memdesc:a3edbdc3a80b2a5c1e24606fc25eab448"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to initalize mpi. <br /></td></tr>
-<tr class="separator:a3edbdc3a80b2a5c1e24606fc25eab448"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa3050a3f5a2791a245c899b101605239"><td class="memItemLeft" align="right" valign="top"><a id="aa3050a3f5a2791a245c899b101605239"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa3050a3f5a2791a245c899b101605239">siesta_run_control_wout</a> = 2</td></tr>
-<tr class="memdesc:aa3050a3f5a2791a245c899b101605239"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to close the wout file. <br /></td></tr>
-<tr class="separator:aa3050a3f5a2791a245c899b101605239"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed7a512f2da2451105ece9eb19f43c7e"><td class="memItemLeft" align="right" valign="top"><a id="aed7a512f2da2451105ece9eb19f43c7e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aed7a512f2da2451105ece9eb19f43c7e">siesta_run_sync_namelist</a> = 3</td></tr>
-<tr class="memdesc:aed7a512f2da2451105ece9eb19f43c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to sycn the namelist inputs. <br /></td></tr>
-<tr class="separator:aed7a512f2da2451105ece9eb19f43c7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>. This module contains all the code necessary to interface setup and run SIESTA. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a3de6a89dbe0332b6e36726df6446586a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3de6a89dbe0332b6e36726df6446586a">&#9670;&nbsp;</a></span>siesta_run_construct()</h2>
-
-<div class="memitem">
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-      <table class="memname">
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-          <td class="memname">class (<a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>) function, pointer siesta_run::siesta_run_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>run_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>verbose</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>init_mpi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>close_w</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct new <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object. Performs all the initialization needed to operate SIESTA.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">run_comm</td><td>MPI Communicator to use. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">verbose</td><td>Control the code screen output. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">init_mpi</td><td>Instructs if MPI should be initialized. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">close_wout</td><td>Instructs if wout file should be closed on deallocate. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>Path to the siesta namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a34192c15f6cda422bdf260056fee9ddb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a34192c15f6cda422bdf260056fee9ddb">&#9670;&nbsp;</a></span>siesta_run_converge()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_run::siesta_run_converge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the SIESTA equilibrium. </p>
-<p>This method converges the <a class="el" href="structsiesta__run_1_1siesta__run__class.html" title="Interface for the siesta_run constructor.">siesta_run_class</a> equilibrium. Initializes the evolution module variables and converges the force residual using a diagonal preconditioner. Applies the external island perturbation if possible. Loads restart file before convergence.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1c33afffa76a39261bbb967b49e31ffb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1c33afffa76a39261bbb967b49e31ffb">&#9670;&nbsp;</a></span>siesta_run_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">subroutine siesta_run::siesta_run_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> object. This also performs the shut down procedures for SIESTA.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a39f2be7bdf0394de83c9d366dbd3edac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a39f2be7bdf0394de83c9d366dbd3edac">&#9670;&nbsp;</a></span>siesta_run_get_1d()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (dp) function siesta_run::siesta_run_get_1d </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get 1D parameter value. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of the parameter to set. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Array index of to set the value to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Value of the parameter at the index. </dd></dl>
-
-</div>
-</div>
-<a id="aa7d064142ea9b752edc46db8bf587326"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa7d064142ea9b752edc46db8bf587326">&#9670;&nbsp;</a></span>siesta_run_sync()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_run::siesta_run_sync </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sync child equilibria. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
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-
-<p>This file contains subroutines for aupdating from t to t + delta_t the magnetic field and pressure as part of the SIESTA project. Stores updated values of JPMN*H, JBSUBXMN*H in Quantities Module.  
-<a href="namespacesiesta__state.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ad2ea1ce9eed73d2a06aa641b13e5b3ae"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__state.html#ad2ea1ce9eed73d2a06aa641b13e5b3ae">update_state</a> (lprint, fsq_total, ftol)</td></tr>
-<tr class="memdesc:ad2ea1ce9eed73d2a06aa641b13e5b3ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the SIESTA state.  <a href="namespacesiesta__state.html#ad2ea1ce9eed73d2a06aa641b13e5b3ae">More...</a><br /></td></tr>
-<tr class="separator:ad2ea1ce9eed73d2a06aa641b13e5b3ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aab6a1a18921a199e51c6ac217f53d1be"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__state.html#aab6a1a18921a199e51c6ac217f53d1be">updatefields</a> (jbsupsmnh, jbsupumnh, jbsupvmnh, jpmnh,</td></tr>
-<tr class="memdesc:aab6a1a18921a199e51c6ac217f53d1be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the magentic and pressure for the current SIESTA state.  <a href="namespacesiesta__state.html#aab6a1a18921a199e51c6ac217f53d1be">More...</a><br /></td></tr>
-<tr class="separator:aab6a1a18921a199e51c6ac217f53d1be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa14e93514b783345e0bab43eabeaeb60"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__state.html#aa14e93514b783345e0bab43eabeaeb60">update_diagnostics</a> (jbsupsmnh, jbsupumnh, jbsupvmnh,</td></tr>
-<tr class="memdesc:aa14e93514b783345e0bab43eabeaeb60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write SIESTA diagnostic (screen) output per iteration.  <a href="namespacesiesta__state.html#aa14e93514b783345e0bab43eabeaeb60">More...</a><br /></td></tr>
-<tr class="separator:aa14e93514b783345e0bab43eabeaeb60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb1a2c68bb299701c31b8cdbf599d37e"><td class="memItemLeft" align="right" valign="top"><a id="aeb1a2c68bb299701c31b8cdbf599d37e"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__state.html#aeb1a2c68bb299701c31b8cdbf599d37e">clear_field_perts</a></td></tr>
-<tr class="memdesc:aeb1a2c68bb299701c31b8cdbf599d37e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the perturbations of the SIESTA state. <br /></td></tr>
-<tr class="separator:aeb1a2c68bb299701c31b8cdbf599d37e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-Variables</h2></td></tr>
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-logical, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__state.html#a4216fe9b48cba159333231e654010294">lfirst</a> = .true.</td></tr>
-<tr class="memdesc:a4216fe9b48cba159333231e654010294"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag to indicate that this was the first run. <br /></td></tr>
-<tr class="separator:a4216fe9b48cba159333231e654010294"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains subroutines for aupdating from t to t + delta_t the magnetic field and pressure as part of the SIESTA project. Stores updated values of JPMN*H, JBSUBXMN*H in Quantities Module. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aa14e93514b783345e0bab43eabeaeb60"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa14e93514b783345e0bab43eabeaeb60">&#9670;&nbsp;</a></span>update_diagnostics()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine siesta_state::update_diagnostics </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write SIESTA diagnostic (screen) output per iteration. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupsmnh</td><td>Contravariant magnetic field in the s direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupumnh</td><td>Contravariant magnetic field in the u direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupvmnh</td><td>Contravariant magnetic field in the v direction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jpmnh</td><td>Pressure Fourier coeffients. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">bs</td><td>FIXME: UNKNOWN </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">bu</td><td>FIXME: UNKNOWN </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">bsbu_ratio</td><td>FIXME: UNKNOWN </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">pwr_spec</td><td>FIXME: UNKNOWN </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iparity</td><td>Fourier parity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad2ea1ce9eed73d2a06aa641b13e5b3ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad2ea1ce9eed73d2a06aa641b13e5b3ae">&#9670;&nbsp;</a></span>update_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine siesta_state::update_state </td>
-          <td>(</td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>lprint</em>, </td>
-        </tr>
-        <tr>
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-<p>Update the SIESTA state. </p>
-<p>Adds the perturbation to the field. This is called before taking the next step.</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-<div class="memitem">
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-          <td class="memname">subroutine siesta_state::updatefields </td>
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-          <td class="paramname"><em>jbsupsmnh</em>, </td>
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-<p>Update the magentic and pressure for the current SIESTA state. </p>
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-    <tr><td class="paramdir">[in,out]</td><td class="paramname">djbsupsmnh</td><td>Contravariant magnetic field perturbation in the s direction. </td></tr>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<p>Defines the base class of the type <a class="el" href="structsignal_1_1signal__class.html">signal_class</a>.  
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacesignal_1_1signal__construct.html">signal_construct</a></td></tr>
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-<tr class="separator:ab47bf869dfd033fb409ac003544e8358"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a25e264489ca9153afdb805417a7e52fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespacesignal.html#a25e264489ca9153afdb805417a7e52fe">More...</a><br /></td></tr>
-<tr class="separator:a25e264489ca9153afdb805417a7e52fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9f5b5cd4713e9e7d71a3f7ef772d8621"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a9f5b5cd4713e9e7d71a3f7ef772d8621">signal_get_modeled_signal_last</a> (this, a_model, sigma, last_value)</td></tr>
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-<tr class="separator:a9f5b5cd4713e9e7d71a3f7ef772d8621"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:afad11360e689ce7c9e3cad4431035bd7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af8b5017e0bb197117d7bdcba69603d3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa0480190087d9d45e35ec9e9b345ef6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebf5d5f26bb348c2df6bedf295718d77"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#aebf5d5f26bb348c2df6bedf295718d77">signal_get_sigma2</a> (this)</td></tr>
-<tr class="memdesc:aebf5d5f26bb348c2df6bedf295718d77"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total sigma^2 of a signal.  <a href="namespacesignal.html#aebf5d5f26bb348c2df6bedf295718d77">More...</a><br /></td></tr>
-<tr class="separator:aebf5d5f26bb348c2df6bedf295718d77"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7f1f415c888be6c78d87d88a48ff0679"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">signal_get_type</a> (this)</td></tr>
-<tr class="memdesc:a7f1f415c888be6c78d87d88a48ff0679"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the signal type.  <a href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">More...</a><br /></td></tr>
-<tr class="separator:a7f1f415c888be6c78d87d88a48ff0679"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:acbe0039aa08ce6ffc1a7ffc19c64f3e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the model and model sigma array indices.  <a href="namespacesignal.html#acbe0039aa08ce6ffc1a7ffc19c64f3e5">More...</a><br /></td></tr>
-<tr class="separator:acbe0039aa08ce6ffc1a7ffc19c64f3e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">signal_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and a position.  <a href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">More...</a><br /></td></tr>
-<tr class="separator:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3f88f23350477f73d4097853ee2e35b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">signal_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:af3f88f23350477f73d4097853ee2e35b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and a signal.  <a href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">More...</a><br /></td></tr>
-<tr class="separator:af3f88f23350477f73d4097853ee2e35b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf1c5a6f36d6e6ca0e73a5799e8d3018"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">signal_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:aaf1c5a6f36d6e6ca0e73a5799e8d3018"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and cartesian position.  <a href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">More...</a><br /></td></tr>
-<tr class="separator:aaf1c5a6f36d6e6ca0e73a5799e8d3018"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9fc88234ff148a7c67bdd1d9fb9be520"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a9fc88234ff148a7c67bdd1d9fb9be520">signal_scale_and_offset</a> (this, a_model, value)</td></tr>
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-<tr class="separator:a9fc88234ff148a7c67bdd1d9fb9be520"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a50e9ee1ee19308a6af369824194e64ac"><td class="memItemLeft" align="right" valign="top">character(len=data_short_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a50e9ee1ee19308a6af369824194e64ac">signal_make_short_name</a> (name, index)</td></tr>
-<tr class="memdesc:a50e9ee1ee19308a6af369824194e64ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate a short name by appending an index.  <a href="namespacesignal.html#a50e9ee1ee19308a6af369824194e64ac">More...</a><br /></td></tr>
-<tr class="separator:a50e9ee1ee19308a6af369824194e64ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adb6802976320da62c5ccf30d7e0578f4"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">signal_write</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:adb6802976320da62c5ccf30d7e0578f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the signal information to an output file.  <a href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">More...</a><br /></td></tr>
-<tr class="separator:adb6802976320da62c5ccf30d7e0578f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a134a194f6b48255f8a6b4673ef374c47"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a134a194f6b48255f8a6b4673ef374c47">signal_write_header</a> (this, iou)</td></tr>
-<tr class="memdesc:a134a194f6b48255f8a6b4673ef374c47"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the signal header information to an output file.  <a href="namespacesignal.html#a134a194f6b48255f8a6b4673ef374c47">More...</a><br /></td></tr>
-<tr class="separator:a134a194f6b48255f8a6b4673ef374c47"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae40bcae556e7b36ae9159493e0a3370d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#ae40bcae556e7b36ae9159493e0a3370d">signals_write_auxiliary</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:ae40bcae556e7b36ae9159493e0a3370d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out any auxiliary signal information to an output file.  <a href="namespacesignal.html#ae40bcae556e7b36ae9159493e0a3370d">More...</a><br /></td></tr>
-<tr class="separator:ae40bcae556e7b36ae9159493e0a3370d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5d55541768dea04da2727deee1c7c10"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#ad5d55541768dea04da2727deee1c7c10">signal_write_step_data</a> (this, a_model, result_ncid, current_step, index, signal_model_value_id, signal_sigma_value_id)</td></tr>
-<tr class="memdesc:ad5d55541768dea04da2727deee1c7c10"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the signal data for a step to the result netcdf file.  <a href="namespacesignal.html#ad5d55541768dea04da2727deee1c7c10">More...</a><br /></td></tr>
-<tr class="separator:ad5d55541768dea04da2727deee1c7c10"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ade7bed9871394e4ee815fb072eb01d53"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#ade7bed9871394e4ee815fb072eb01d53">signal_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:ade7bed9871394e4ee815fb072eb01d53"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child signal state to the parent.  <a href="namespacesignal.html#ade7bed9871394e4ee815fb072eb01d53">More...</a><br /></td></tr>
-<tr class="separator:ade7bed9871394e4ee815fb072eb01d53"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsignal_1_1signal__class.html">signal_class</a>. </p>
-<dl class="section user"><dt></dt><dd>signal Sub Classes: <a class="el" href="namespacemagnetic.html">magnetic</a>, <a class="el" href="namespacesxrem.html">sxrem</a>, <a class="el" href="namespaceintpol.html">intpol</a>, <a class="el" href="namespacethomson.html">thomson</a>, <a class="el" href="namespaceextcurz.html">extcurz</a>, <a class="el" href="namespacemse.html">mse</a>, <a class="el" href="namespaceece.html">ece</a>, <a class="el" href="namespacelimiter.html">limiter</a>, <a class="el" href="namespaceprior__gaussian.html">prior_gaussian</a>, and feedback </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ab47bf869dfd033fb409ac003544e8358"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab47bf869dfd033fb409ac003544e8358">&#9670;&nbsp;</a></span>signal_construct_diagnostic_netcdf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_construct_diagnostic_netcdf </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mdsig_iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>s_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>o_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> containing a diagnostic object. </p>
-<p>Reads the s_name, l_name and units from a netcdf file. Used for constructing the <a class="el" href="namespacemagnetic.html">magnetic</a> objects.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname"><a class="el" href="structsignal_1_1signal__class.html" title="Base class representing a signal.">signal_class</a></td><td>An instance of a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a>. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">mdsig_iou</td><td>NetCDF id of the opened mdsig file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Observed value of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Observed sigma of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Weight factor of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_index</td><td>Index of the model signal scale factor. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">o_index</td><td>Index of the model signal offset factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Apointer to a constructed <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ae2cd6f03b302cf8843b0b267fe9d5357"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae2cd6f03b302cf8843b0b267fe9d5357">&#9670;&nbsp;</a></span>signal_construct_new()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_construct_new </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>s_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>l_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character(len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>units</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>s_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>o_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct new <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>An instance of a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a>. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_name</td><td>The short name of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">l_name</td><td>The short name of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">units</td><td>The units of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Observed value of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Observed sigma of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Weight factor of the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s_index</td><td>Index of the model signal scale factor. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">o_index</td><td>Index of the model signal offset factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ae4badcabc7bfbbee8c7d475fee1e7b17"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae4badcabc7bfbbee8c7d475fee1e7b17">&#9670;&nbsp;</a></span>signal_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa0480190087d9d45e35ec9e9b345ef6d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa0480190087d9d45e35ec9e9b345ef6d">&#9670;&nbsp;</a></span>signal_get_e()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_e </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_cache</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the e contribution of a signal. </p>
-<p>Gets the e contribution of an individual signal. e = SQRT(W)*(O - M)/SQRT(sigma_o^2 + sigma_m^2)</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_cache</td><td>If the signals have been already calculated this should be false. Otherwise set to true. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The e value. </dd></dl>
-
-</div>
-</div>
-<a id="af8b5017e0bb197117d7bdcba69603d3f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af8b5017e0bb197117d7bdcba69603d3f">&#9670;&nbsp;</a></span>signal_get_g2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_g2 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_cache</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the g^2 contribution of a signal. </p>
-<p>Gets the g^2 contribution of an individual signal. g^2 = W*(O - M)^2/(sigma_o^2 + sigma_m^2) = e*e</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_cache</td><td>If the signals have been already calculated this should be false. Otherwise set to true. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The g^2 value. </dd></dl>
-
-</div>
-</div>
-<a id="a014fe1928fcaf5de944ad3e7b2c3e9c9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a014fe1928fcaf5de944ad3e7b2c3e9c9">&#9670;&nbsp;</a></span>signal_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a signal and a position. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_gp_i method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with.</p>
-<dl class="section see"><dt>See also</dt><dd>sxrem::sxrem_get_gp_i </dd>
-<dd>
-<a class="el" href="namespaceintpol.html#aae934c05061105070821c5bc51a022f1" title="Gets the guassian process kernel for an inteferometry signal and a position.">intpol::intpol_get_gp_i</a> </dd>
-<dd>
-thomson::thomson_get_gp_i </dd>
-<dd>
-<a class="el" href="namespaceece.html#ada4067503770a25be3bd8073e8be4bc8" title="Gets the guassian process kernel for an ece signal and a position.">ece::ece_get_gp_i</a> </dd>
-<dd>
-<a class="el" href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d" title="Gets the guassian process kernel for a prior signal and a position.">prior_gaussian::prior_gaussian_get_gp_i</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A model_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="af3f88f23350477f73d4097853ee2e35b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af3f88f23350477f73d4097853ee2e35b">&#9670;&nbsp;</a></span>signal_get_gp_s()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a signal and a signal. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_gp_s method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with. The second signal is cast to a void pointer so it can be send to the subclass instance.</p>
-<dl class="section see"><dt>See also</dt><dd>sxrem::sxrem_get_gp_s </dd>
-<dd>
-<a class="el" href="namespaceintpol.html#a9bbd00974daa42c07ce8be5a30db7e0d" title="Gets the guassian process kernel for an inteferometry signal and a signal.">intpol::intpol_get_gp_s</a> </dd>
-<dd>
-<a class="el" href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860" title="Gets the guassian process kernel for a thomson signal and a signal.">thomson::thomson_get_gp_s</a> </dd>
-<dd>
-<a class="el" href="namespaceece.html#a5d779683571c129302875d7409e1e23f" title="Gets the guassian process kernel for a ece signal and a signal.">ece::ece_get_gp_s</a> </dd>
-<dd>
-<a class="el" href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d" title="Gets the guassian process kernel for a prior signal and a signal.">prior_gaussian::prior_gaussian_get_gp_s</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A model_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance for the second signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="aaf1c5a6f36d6e6ca0e73a5799e8d3018"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaf1c5a6f36d6e6ca0e73a5799e8d3018">&#9670;&nbsp;</a></span>signal_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a signal and cartesian position. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_gp_x method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with.</p>
-<dl class="section see"><dt>See also</dt><dd>sxrem::sxrem_get_gp_x </dd>
-<dd>
-<a class="el" href="namespaceintpol.html#a1d4f2beb7ef68530032e37e7bb4ccc24" title="Gets the guassian process kernel for a inteferometry signal and a cartesian position.">intpol::intpol_get_gp_x</a> </dd>
-<dd>
-thomson::thomson_get_gp_x </dd>
-<dd>
-<a class="el" href="namespaceece.html#a0e6437945e1e49e36e1b9587c1616124" title="Gets the guassian process kernel for an ece signal and a cartesian position.">ece::ece_get_gp_x</a> </dd>
-<dd>
-<a class="el" href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30" title="Gets the guassian process kernel for a prior signal and a cartesian position.">prior_gaussian::prior_gaussian_get_gp_x</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A model_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="acbe0039aa08ce6ffc1a7ffc19c64f3e5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acbe0039aa08ce6ffc1a7ffc19c64f3e5">&#9670;&nbsp;</a></span>signal_get_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_get_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_name_length), dimension(7), intent(inout)&#160;</td>
-          <td class="paramname"><em>header</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the model and model sigma array indices. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_header method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemagnetic.html#a1f0d1596b2e0e5e2f7b0cf38cd6b8542" title="Gets a discription of the model and model sigma array indices.">magnetic::magnetic_get_header</a> </dd>
-<dd>
-<a class="el" href="namespacemse.html#a97e4b8b2c5065f5d60ad76d06a74027c" title="Gets a discription of the model and model sigma array indices.">mse::mse_get_header</a> </dd>
-<dd>
-<a class="el" href="namespaceece.html#a3d9a060e5c861aa99ce739fa50fb31dd" title="Gets a discription of the model and model sigma array indices.">ece::ece_get_header</a> </dd>
-<dd>
-<a class="el" href="namespacelimiter.html#a3b1f11eb0fd97b734d63364f9a61a102" title="Gets a discription of the model and model sigma array indices.">limiter::limiter_get_header</a> </dd>
-<dd>
-feedback::feedback_get_header </dd>
-<dd>
-combination_get_header </dd>
-<dd>
-gaussp_get_header</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">header</td><td>Buffer arrays to write header strings to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a25e264489ca9153afdb805417a7e52fe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a25e264489ca9153afdb805417a7e52fe">&#9670;&nbsp;</a></span>signal_get_modeled_signal_cache()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) signal::signal_get_modeled_signal_cache </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_cache</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>This method is checks if the cached vales should be used first otherwise calls the subclass method.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_cache</td><td>If false calculate the signal and sigma and write them to the cache. Otherwise read from the cache without recalculating the signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a9f5b5cd4713e9e7d71a3f7ef772d8621"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9f5b5cd4713e9e7d71a3f7ef772d8621">&#9670;&nbsp;</a></span>signal_get_modeled_signal_last()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) signal::signal_get_modeled_signal_last </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_modeled_signal method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with unless the signal is read from the cached value. Read from the cached value when the signal doesn't need to be recalulated. If the signal is to be recalculated, write these to the cache.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemagnetic.html#aaa11a4bdaae2647f6546a9f9c331057b" title="Calculates the modeled signal.">magnetic::magnetic_get_modeled_signal</a> </dd>
-<dd>
-sxrem::sxrem_get_modeled_signal </dd>
-<dd>
-<a class="el" href="namespaceintpol.html#a1be34f1fc73e150ac661a2b2ad2d1d29" title="Calculates the interferometry signal.">intpol::intpol_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacethomson.html#a3d42a4d600168c3c53fb28a3db35a858" title="Calculates the modeled te signal.">thomson::thomson_te_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacethomson.html#a0beaae26008bb46c750e4b73cc39005c" title="Calculates the modeled pressure signal.">thomson::thomson_p_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacethomson.html#a2f5aea84ecb67cb6f085177a914ab711" title="Calculates the modeled ne signal.">thomson::thomson_ne_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespaceextcurz.html#a9b24c42a5f7fe364a234534689209c0a" title="Calculates the modeled signal.">extcurz::extcurz_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacemse.html#a3a078696f20855ea14f591c8f5f66db7" title="Calculates the modeled signal.">mse::mse_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespaceece.html#a788642ab237a2cba51665e07304397c3" title="Calculates the modeled signal.">ece::ece_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacelimiter.html#a45aa0ac5949f3a566bad8db3bb191df1" title="Calculates the modeled signal.">limiter::limiter_get_modeled_signal</a> </dd>
-<dd>
-prior_guassian::prior_guassian_get_modeled_signal </dd>
-<dd>
-<a class="el" href="namespacesxrem__ratio.html#abdecaf456c565af7a11370e466dc90ae" title="Calculates the modeled signal.">sxrem_ratio::sxrem_ratio_get_modeled_signal</a> </dd>
-<dd>
-<a class="el" href="namespacecombination.html#ad4c88b061a3603e725e2219c3c75dab6" title="Calculates the modeled signal.">combination::combination_get_modeled_signal</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="afad11360e689ce7c9e3cad4431035bd7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afad11360e689ce7c9e3cad4431035bd7">&#9670;&nbsp;</a></span>signal_get_observed_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_observed_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the observed signal. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_modeled_signal method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with. All signals expect feed back signals use a fixed observed value.</p>
-<dl class="section see"><dt>See also</dt><dd>feedback::feedback_get_modeled_signal</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The observed value. </dd></dl>
-
-</div>
-</div>
-<a id="aebf5d5f26bb348c2df6bedf295718d77"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aebf5d5f26bb348c2df6bedf295718d77">&#9670;&nbsp;</a></span>signal_get_sigma2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function signal::signal_get_sigma2 </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
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-
-<p>Calculates the total sigma^2 of a signal. </p>
-<p>Gets the total sigma^2 of an individual signal. sigma^2 = sigma_o^2 + sigma_m^2</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The e value. </dd></dl>
-<dl class="section note"><dt>Note</dt><dd>this assumes that modeled sigma value has already been cached by a call to signal_get_modeled_signal </dd></dl>
-
-</div>
-</div>
-<a id="a7f1f415c888be6c78d87d88a48ff0679"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7f1f415c888be6c78d87d88a48ff0679">&#9670;&nbsp;</a></span>signal_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function signal::signal_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the signal type. </p>
-<p>This method is meant to be overwritten by a subclass method. As a result, returns the get_type method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with.</p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemagnetic.html#ae0292ac383a7c465f2d946c13361f901" title="Gets a discription of the magnetic type.">magnetic::magnetic_get_type</a> </dd>
-<dd>
-sxrem::sxrem_get_type </dd>
-<dd>
-<a class="el" href="namespaceintpol.html#a49a4d4cd2b99c3e29f3a1e394a263ea5" title="Gets a discription of the intpol type.">intpol::intpol_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacethomson.html#a1c69b8158aa88dbf4bb5227044c9c4dd" title="Gets a discription of the thomson type.">thomson::thomson_get_type</a> </dd>
-<dd>
-<a class="el" href="namespaceextcurz.html#a4a5a26b8596d79e2a898350fd5ec3aeb" title="Gets a discription of the extcurz type.">extcurz::extcurz_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacemse.html#addf00f4ab7ba2ce834448e98694811c1" title="Gets a discription of the mse type.">mse::mse_get_type</a> </dd>
-<dd>
-<a class="el" href="namespaceece.html#a2b02efa97eb2b1779e8e2239f806e808" title="Gets a discription of the ece type.">ece::ece_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacelimiter.html#a8e32e4e8c7d4729044dad84771320a39" title="Gets a discription of the limiter type.">limiter::limiter_get_type</a> </dd>
-<dd>
-prior_guassian::prior_guassian_get_type </dd>
-<dd>
-<a class="el" href="namespacesxrem__ratio.html#a3334120e426e0f3524887db26808b269" title="Gets a discription of the feedback type.">sxrem_ratio::sxrem_ratio_get_type</a> </dd>
-<dd>
-<a class="el" href="namespacecombination.html#a412e97694c36c078c7c6b98f79ae0da5" title="Gets a discription of the combination type.">combination::combination_get_type</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the signal type. </dd></dl>
-
-</div>
-</div>
-<a id="a50e9ee1ee19308a6af369824194e64ac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a50e9ee1ee19308a6af369824194e64ac">&#9670;&nbsp;</a></span>signal_make_short_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_short_name_length) function signal::signal_make_short_name </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Generate a short name by appending an index. </p>
-<p>Returns an appended string with no leading spaces. This check the number of digits in the index then chooses the appropriate formatting.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>A name of a signal to append to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal to append. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string an appended string. </dd></dl>
-
-</div>
-</div>
-<a id="a9fc88234ff148a7c67bdd1d9fb9be520"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9fc88234ff148a7c67bdd1d9fb9be520">&#9670;&nbsp;</a></span>signal_scale_and_offset()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_scale_and_offset </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(inout)&#160;</td>
-          <td class="paramname"><em>value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Apply scale and offset to the value. </p>
-<p>Modeled signals can contain an extra scaling and offset. Apply these to the value. These are obtained from the model. </p><dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A intpol_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">value</td><td>The value to scale and offset. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ade7bed9871394e4ee815fb072eb01d53"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ade7bed9871394e4ee815fb072eb01d53">&#9670;&nbsp;</a></span>signal_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child signal state to the parent. </p>
-<p>Syncs data between a child and the parent process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Reconstruction rank to sync. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adb6802976320da62c5ccf30d7e0578f4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adb6802976320da62c5ccf30d7e0578f4">&#9670;&nbsp;</a></span>signal_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the signal information to an output file. </p>
-<p>Signals information is formated as the index, signal type, s_name, g^2, weight, observed value, observed sigma, modeled value and modeled sigma.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>This assumes that signals have already been calculated. The model isn't used by signal_get_g2 since it is reading from the cache but must be passed in anyway. </dd></dl>
-
-</div>
-</div>
-<a id="a134a194f6b48255f8a6b4673ef374c47"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a134a194f6b48255f8a6b4673ef374c47">&#9670;&nbsp;</a></span>signal_write_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_write_header </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the signal header information to an output file. </p>
-<p>Signals information is formated as a the index, signal type, s_name, g^2, weight, observed value, observed sigma, modeled value and modeled sigma.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>This should only be called when the type of signal changes. </dd></dl>
-
-</div>
-</div>
-<a id="ad5d55541768dea04da2727deee1c7c10"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad5d55541768dea04da2727deee1c7c10">&#9670;&nbsp;</a></span>signal_write_step_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signal_write_step_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>signal_model_value_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>signal_sigma_value_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the signal data for a step to the result netcdf file. </p>
-<p>Writes out the observed, modeled and total sigma value of the signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A diagnostic_class instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>A NetCDF id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>The surrent reconstruction step. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_model_value_id</td><td>NetCDF variable id of the model value. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_sigma_value_id</td><td>NetCDF variable id of the total sigma. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>This assumes that signals have already been calculated. The model isn't used by signal_get_g2 since it is reading from the cache but must be passed in anyway. </dd></dl>
-
-</div>
-</div>
-<a id="ae40bcae556e7b36ae9159493e0a3370d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae40bcae556e7b36ae9159493e0a3370d">&#9670;&nbsp;</a></span>signals_write_auxiliary()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine signal::signals_write_auxiliary </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out any auxiliary signal information to an output file. </p>
-<p>This method is meant to be overwritten by a subclass method if need be. As a result, returns the write_auxiliary method of the subclass instance <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> was constructed with. Otherwise uses the default. nothing is written.</p>
-<dl class="section see"><dt>See also</dt><dd>sxrem_ratio::sxrem_ratio_write_auxilary </dd>
-<dd>
-<a class="el" href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8" title="Write out auxiliary signal information to an output file.">prior_gaussian::prior_gaussian_write_auxiliary</a> </dd>
-<dd>
-<a class="el" href="namespacecombination.html#a24b7f5c7b70b0696a7098bb4039b7afb" title="Write out auxiliary signal information to an output file.">combination::combination_write_auxiliary</a></dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsignal_1_1signal__class.html">signal_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-  <div class="headertitle">
-<div class="title">signal_dot Module Reference</div>  </div>
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-<p>Defines the base class of type <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>. This module contains common code used in parsing diagnostic dot files. The actual parsing of the diagnostic dot file is handled by <a class="el" href="namespaceipch__dot.html">ipch_dot</a>, <a class="el" href="namespacethscte__dot.html">thscte_dot</a> and <a class="el" href="namespacesxrch__dot.html">sxrch_dot</a>.  
-<a href="namespacesignal__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a diagnostic dot file. This is an opaqe class.  <a href="structsignal__dot_1_1signal__dot__file.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:af6a352119d390bb53af1ec067116985a"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>) function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#af6a352119d390bb53af1ec067116985a">signal_dot_open</a> (file, signal_id)</td></tr>
-<tr class="memdesc:af6a352119d390bb53af1ec067116985a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Open a diagnostic dot file.  <a href="namespacesignal__dot.html#af6a352119d390bb53af1ec067116985a">More...</a><br /></td></tr>
-<tr class="separator:af6a352119d390bb53af1ec067116985a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a24c6b1e73138a01651492112d6642478"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a24c6b1e73138a01651492112d6642478">signal_dot_close</a> (signal_dot_file_ref)</td></tr>
-<tr class="memdesc:a24c6b1e73138a01651492112d6642478"><td class="mdescLeft">&#160;</td><td class="mdescRight">Close a diagnostic dot file.  <a href="namespacesignal__dot.html#a24c6b1e73138a01651492112d6642478">More...</a><br /></td></tr>
-<tr class="separator:a24c6b1e73138a01651492112d6642478"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ace53c655a3df5ef8f8bc9ed7b7c73d9e"><td class="memItemLeft" align="right" valign="top">subroutine, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#ace53c655a3df5ef8f8bc9ed7b7c73d9e">signal_dot_parse_chord</a> (signal_dot_file_ref, coordinate_type, chord_name, xcart_i, xcart_f)</td></tr>
-<tr class="memdesc:ace53c655a3df5ef8f8bc9ed7b7c73d9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a chord from a diagnostic dot file.  <a href="namespacesignal__dot.html#ace53c655a3df5ef8f8bc9ed7b7c73d9e">More...</a><br /></td></tr>
-<tr class="separator:ace53c655a3df5ef8f8bc9ed7b7c73d9e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a217a918db0cbfc6a70fcf154ab5f00"><td class="memItemLeft" align="right" valign="top">real(rprec) function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a7a217a918db0cbfc6a70fcf154ab5f00">signal_dot_parse_real</a> (signal_dot_file_ref, message)</td></tr>
-<tr class="memdesc:a7a217a918db0cbfc6a70fcf154ab5f00"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a single real from a diagnostic dot file.  <a href="namespacesignal__dot.html#a7a217a918db0cbfc6a70fcf154ab5f00">More...</a><br /></td></tr>
-<tr class="separator:a7a217a918db0cbfc6a70fcf154ab5f00"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a17f2a2b14dacee16bac7bbcaf08b84e6"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a17f2a2b14dacee16bac7bbcaf08b84e6">signal_dot_parse_2_real</a> (signal_dot_file_ref, message)</td></tr>
-<tr class="memdesc:a17f2a2b14dacee16bac7bbcaf08b84e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a two reals from a diagnostic dot file.  <a href="namespacesignal__dot.html#a17f2a2b14dacee16bac7bbcaf08b84e6">More...</a><br /></td></tr>
-<tr class="separator:a17f2a2b14dacee16bac7bbcaf08b84e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a34bd4229520ce6a2c1eba033af9e35ec"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a34bd4229520ce6a2c1eba033af9e35ec">signal_dot_parse_3_real</a> (signal_dot_file_ref, message)</td></tr>
-<tr class="memdesc:a34bd4229520ce6a2c1eba033af9e35ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a three reals from a diagnostic dot file.  <a href="namespacesignal__dot.html#a34bd4229520ce6a2c1eba033af9e35ec">More...</a><br /></td></tr>
-<tr class="separator:a34bd4229520ce6a2c1eba033af9e35ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0340c861c809b372b3c695ba6cc18dd0"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a0340c861c809b372b3c695ba6cc18dd0">signal_dot_parse_int</a> (signal_dot_file_ref, message)</td></tr>
-<tr class="memdesc:a0340c861c809b372b3c695ba6cc18dd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse a single integer from a diagnostic dot file.  <a href="namespacesignal__dot.html#a0340c861c809b372b3c695ba6cc18dd0">More...</a><br /></td></tr>
-<tr class="separator:a0340c861c809b372b3c695ba6cc18dd0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9783bf334750181d119f4412df80432b"><td class="memItemLeft" align="right" valign="top">integer function, dimension(2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a9783bf334750181d119f4412df80432b">signal_dot_parse_2_int</a> (signal_dot_file_ref, message)</td></tr>
-<tr class="memdesc:a9783bf334750181d119f4412df80432b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse two integers from a diagnostic dot file.  <a href="namespacesignal__dot.html#a9783bf334750181d119f4412df80432b">More...</a><br /></td></tr>
-<tr class="separator:a9783bf334750181d119f4412df80432b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac010e76ddd53d36c8af35230563bb10"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#aac010e76ddd53d36c8af35230563bb10">signal_dot_read_keyword</a> (signal_dot_file_ref, keywords)</td></tr>
-<tr class="memdesc:aac010e76ddd53d36c8af35230563bb10"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a keyword from the diagnostic dot file.  <a href="namespacesignal__dot.html#aac010e76ddd53d36c8af35230563bb10">More...</a><br /></td></tr>
-<tr class="separator:aac010e76ddd53d36c8af35230563bb10"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8a1acba32c7f056690c7ce446ff83625"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacesignal__dot.html#a4424b615aa57d5f2ece45bd5feb4bf40">signal_dot_line_len</a>) function, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a8a1acba32c7f056690c7ce446ff83625">signal_dot_read_line</a> (signal_dot_file_ref, pre_message, post_message)</td></tr>
-<tr class="memdesc:a8a1acba32c7f056690c7ce446ff83625"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read line from diagnostic dot file.  <a href="namespacesignal__dot.html#a8a1acba32c7f056690c7ce446ff83625">More...</a><br /></td></tr>
-<tr class="separator:a8a1acba32c7f056690c7ce446ff83625"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a4424b615aa57d5f2ece45bd5feb4bf40"><td class="memItemLeft" align="right" valign="top"><a id="a4424b615aa57d5f2ece45bd5feb4bf40"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal__dot.html#a4424b615aa57d5f2ece45bd5feb4bf40">signal_dot_line_len</a> = 200</td></tr>
-<tr class="memdesc:a4424b615aa57d5f2ece45bd5feb4bf40"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum line length. <br /></td></tr>
-<tr class="separator:a4424b615aa57d5f2ece45bd5feb4bf40"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of type <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>. This module contains common code used in parsing diagnostic dot files. The actual parsing of the diagnostic dot file is handled by <a class="el" href="namespaceipch__dot.html">ipch_dot</a>, <a class="el" href="namespacethscte__dot.html">thscte_dot</a> and <a class="el" href="namespacesxrch__dot.html">sxrch_dot</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a24c6b1e73138a01651492112d6642478"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a24c6b1e73138a01651492112d6642478">&#9670;&nbsp;</a></span>signal_dot_close()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public signal_dot::signal_dot_close </td>
-          <td>(</td>
-          <td class="paramtype">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Close a diagnostic dot file. </p>
-<p>Closes a diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af6a352119d390bb53af1ec067116985a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af6a352119d390bb53af1ec067116985a">&#9670;&nbsp;</a></span>signal_dot_open()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>) function, public signal_dot::signal_dot_open </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>signal_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Open a diagnostic dot file. </p>
-<p>Opens a diagnostic dot file for reading.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file</td><td>Filename of the diagnostic dot file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_id</td><td>Description of the diagnostic dot file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A constructed <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> instance. </dd></dl>
-
-</div>
-</div>
-<a id="a9783bf334750181d119f4412df80432b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9783bf334750181d119f4412df80432b">&#9670;&nbsp;</a></span>signal_dot_parse_2_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function, dimension(2) signal_dot::signal_dot_parse_2_int </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>message</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse two integers from a diagnostic dot file. </p>
-<p>Reads two integers from the diagnostic dot file. This is used to be able to get extra information about a diagnostic in the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Error message to report back if there was a problem. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parsed real value. </dd></dl>
-
-</div>
-</div>
-<a id="a17f2a2b14dacee16bac7bbcaf08b84e6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a17f2a2b14dacee16bac7bbcaf08b84e6">&#9670;&nbsp;</a></span>signal_dot_parse_2_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(2) signal_dot::signal_dot_parse_2_real </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>message</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a two reals from a diagnostic dot file. </p>
-<p>Reads three reals from the diagnostic dot file. This is used to be able to get extra information about a diagnostic in the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Error message to report back if there was a problem. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parsed real values. </dd></dl>
-
-</div>
-</div>
-<a id="a34bd4229520ce6a2c1eba033af9e35ec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a34bd4229520ce6a2c1eba033af9e35ec">&#9670;&nbsp;</a></span>signal_dot_parse_3_real()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) signal_dot::signal_dot_parse_3_real </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
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-<p>Parse a three reals from a diagnostic dot file. </p>
-<p>Reads three reals from the diagnostic dot file. This is used to be able to get extra information about a diagnostic in the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Error message to report back if there was a problem. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parsed real values. </dd></dl>
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-</div>
-</div>
-<a id="ace53c655a3df5ef8f8bc9ed7b7c73d9e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ace53c655a3df5ef8f8bc9ed7b7c73d9e">&#9670;&nbsp;</a></span>signal_dot_parse_chord()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine, public signal_dot::signal_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=data_short_name_length), intent(out)&#160;</td>
-          <td class="paramname"><em>chord_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(3), intent(out)&#160;</td>
-          <td class="paramname"><em>xcart_i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real(rprec), dimension(3), intent(out), optional&#160;</td>
-          <td class="paramname"><em>xcart_f</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a chord from a diagnostic dot file. </p>
-<p>Chords start with the first line as the chord name. The it is followed by one or two lines of 3 coordinates. All coodinates for the cord are returned in carteasian coordinates.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies if the coordinate is cartesian or cylindrical. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">chord_name</td><td>The name of the chord. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xcart_i</td><td>The initial position of the chord in cartesian coordinates. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">xcart_f</td><td>The final position of the chord in cartesian coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0340c861c809b372b3c695ba6cc18dd0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0340c861c809b372b3c695ba6cc18dd0">&#9670;&nbsp;</a></span>signal_dot_parse_int()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">integer function signal_dot::signal_dot_parse_int </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>message</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a single integer from a diagnostic dot file. </p>
-<p>Reads a single integer from the diagnostic dot file. This is used to be able to get extra information about a diagnostic in the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Error message to report back if there was a problem. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parsed integer value. </dd></dl>
-
-</div>
-</div>
-<a id="a7a217a918db0cbfc6a70fcf154ab5f00"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7a217a918db0cbfc6a70fcf154ab5f00">&#9670;&nbsp;</a></span>signal_dot_parse_real()</h2>
-
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-          <td class="memname">real (rprec) function, public signal_dot::signal_dot_parse_real </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>message</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse a single real from a diagnostic dot file. </p>
-<p>Reads a single real from the diagnostic dot file. This is used to be able to get extra information about a diagnostic in the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">message</td><td>Error message to report back if there was a problem. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parsed real value. </dd></dl>
-
-</div>
-</div>
-<a id="aac010e76ddd53d36c8af35230563bb10"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac010e76ddd53d36c8af35230563bb10">&#9670;&nbsp;</a></span>signal_dot_read_keyword()</h2>
-
-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function, public signal_dot::signal_dot_read_keyword </td>
-          <td>(</td>
-          <td class="paramtype">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>signal_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>keywords</em>&#160;</td>
-        </tr>
-        <tr>
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-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a keyword from the diagnostic dot file. </p>
-<p>Read lines until a valid keyword is reached ot the end of the file is reached.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">keywords</td><td>List of keywords to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The found keyword. </dd></dl>
-
-</div>
-</div>
-<a id="a8a1acba32c7f056690c7ce446ff83625"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8a1acba32c7f056690c7ce446ff83625">&#9670;&nbsp;</a></span>signal_dot_read_line()</h2>
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-          <td class="memname">character (len=<a class="el" href="namespacesignal__dot.html#a4424b615aa57d5f2ece45bd5feb4bf40">signal_dot_line_len</a>) function, public signal_dot::signal_dot_read_line </td>
-          <td>(</td>
-          <td class="paramtype">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>pre_message</em>, </td>
-        </tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>post_message</em>&#160;</td>
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-          <td>)</td>
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-<p>Read line from diagnostic dot file. </p>
-<p>Reads single line from the diagnostic dot file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signal_dot_file_ref</td><td>An instance of a <a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pre_message</td><td>Prefix message incase of error. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">post_message</td><td>Post message incase of error. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The line that was read. </dd></dl>
-
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-<p>Defines the base class of the type <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>.  
-<a href="namespacesurface__commandline__parser.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class containing a parsed surface_commandline.  <a href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a96b1398020ce783b2e0b9851f4a8d69c"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__commandline__parser.html#a96b1398020ce783b2e0b9851f4a8d69c">surface_commandline_parser_construct</a> (parallel)</td></tr>
-<tr class="memdesc:a96b1398020ce783b2e0b9851f4a8d69c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object.  <a href="namespacesurface__commandline__parser.html#a96b1398020ce783b2e0b9851f4a8d69c">More...</a><br /></td></tr>
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-<tr class="separator:a0cb64c12a1f73243c9c03df1ecb7d279"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a4f73459e1dc91ea0dff4b8832dc9aa69"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ad45ccc6137e6ab41eb9d99dbbd3b3bcf"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af7916005e2330405b3395eeca4bcd405"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__commandline__parser.html#a18ba83fe2fcbf9aaa6c8ae44eb0bea90">surface_commandline_parser_no_error</a> = 0</td></tr>
-<tr class="memdesc:a18ba83fe2fcbf9aaa6c8ae44eb0bea90"><td class="mdescLeft">&#160;</td><td class="mdescRight">Commandline argument not found. <br /></td></tr>
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-<tr class="memitem:a8af62332b962aff18cec1998bf9ad477"><td class="memItemLeft" align="right" valign="top"><a id="a8af62332b962aff18cec1998bf9ad477"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__commandline__parser.html#a8af62332b962aff18cec1998bf9ad477">surface_commandline_parser_arg_not_found</a> = -1</td></tr>
-<tr class="memdesc:a8af62332b962aff18cec1998bf9ad477"><td class="mdescLeft">&#160;</td><td class="mdescRight">Commandline argument not found. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
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-<h2 class="memtitle"><span class="permalink"><a href="#a96b1398020ce783b2e0b9851f4a8d69c">&#9670;&nbsp;</a></span>surface_commandline_parser_construct()</h2>
-
-<div class="memitem">
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-          <td class="memname">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>) function, pointer surface_commandline_parser::surface_commandline_parser_construct </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em></td><td>)</td>
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-<p>Construct a <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object. The command line is parsed assuming the the flags take the form of -flag=value. If the '=' is missing, it is assumed there is no value. If -h is found, the help text is printed out and the program terminated.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a7fa92007d385a9156455550ccc906802"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7fa92007d385a9156455550ccc906802">&#9670;&nbsp;</a></span>surface_commandline_parser_destruct()</h2>
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-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine surface_commandline_parser::surface_commandline_parser_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
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-<p>Deconstruct a <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-  </table>
-  </dd>
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-<a id="ad45ccc6137e6ab41eb9d99dbbd3b3bcf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad45ccc6137e6ab41eb9d99dbbd3b3bcf">&#9670;&nbsp;</a></span>surface_commandline_parser_flag_requires_value()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine surface_commandline_parser::surface_commandline_parser_flag_requires_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-
-<p>Check if a command line argument requires a value. </p>
-<p>Command line arguments for</p>
-<ul>
-<li>-woutf</li>
-<li>-surff</li>
-<li>-logf</li>
-</ul>
-<p>require a value to be set.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the argument has a value. </dd></dl>
-
-</div>
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-<a id="a4a90f6e19171fca674df6d5069002f6d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a90f6e19171fca674df6d5069002f6d">&#9670;&nbsp;</a></span>surface_commandline_parser_get_integer()</h2>
-
-<div class="memitem">
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-          <td class="memname">integer function surface_commandline_parser::surface_commandline_parser_get_integer </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as an integer. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="a312a118e86c345c4ec08108dc2c91cfe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a312a118e86c345c4ec08108dc2c91cfe">&#9670;&nbsp;</a></span>surface_commandline_parser_get_real()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function surface_commandline_parser::surface_commandline_parser_get_real </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>default_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Get the value of an argument as a Real. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found, no value was set or the value cannot be converted to an integer, the default value is returned. Command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">default_value</td><td>Default value in case flag is not set. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="a0cb64c12a1f73243c9c03df1ecb7d279"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0cb64c12a1f73243c9c03df1ecb7d279">&#9670;&nbsp;</a></span>surface_commandline_parser_get_string()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">character (len=path_length) function surface_commandline_parser::surface_commandline_parser_get_string </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of an argument as a string. </p>
-<p>Searches the parsed command line flags for a matching command like argument. If no matching argument is found or no value was set, a blank string is returned. command line arguments take the form of -flag.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The argument value. </dd></dl>
-
-</div>
-</div>
-<a id="a4f73459e1dc91ea0dff4b8832dc9aa69"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4f73459e1dc91ea0dff4b8832dc9aa69">&#9670;&nbsp;</a></span>surface_commandline_parser_is_flag_set()</h2>
-
-<div class="memitem">
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-          <td class="memname">logical function surface_commandline_parser::surface_commandline_parser_is_flag_set </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>arg</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Check if a command line argument was set. </p>
-<p>Searches the parsed command line flags for a matching command line argument. If no matching argument is found the flag was not set.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">arg</td><td>A argument string to search for. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the argument was found, false if it was not found. </dd></dl>
-
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#af7916005e2330405b3395eeca4bcd405">&#9670;&nbsp;</a></span>surface_commandline_parser_print_help()</h2>
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-          <td class="memname">subroutine surface_commandline_parser::surface_commandline_parser_print_help</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Print out help text. </p>
-<p>Command line help text should take the form of '-flag' that is maximum length of max_arg_length followed by a space. A Y or N indicating the flag takes a value or not followed by a space. A short message describing the flag. A reference for all the command line arguments can be found at <a class="el" href="cl_parsing_sec.html">Command Line Arguments</a>. </p>
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-<p>Defines the base class of the type <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>. This module contains all the code necessary define a surface for cariddi to read a virtual surface from.  
-<a href="namespacesurface__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a surface context. This contains all memory needed to operate surface.  <a href="structsurface__context_1_1surface__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a69e617187f07b0acfd25327aed343587"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__context.html#a69e617187f07b0acfd25327aed343587">surface_context_construct</a> (wout_file_name, surface_file_name, parallel, io_unit)</td></tr>
-<tr class="memdesc:a69e617187f07b0acfd25327aed343587"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a> object.  <a href="namespacesurface__context.html#a69e617187f07b0acfd25327aed343587">More...</a><br /></td></tr>
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-<tr class="memitem:abd945f01c2af536ec0778af571c5682c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__context.html#abd945f01c2af536ec0778af571c5682c">surface_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:abd945f01c2af536ec0778af571c5682c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a bmw_context_class object.  <a href="namespacesurface__context.html#abd945f01c2af536ec0778af571c5682c">More...</a><br /></td></tr>
-<tr class="separator:abd945f01c2af536ec0778af571c5682c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c4eac39b1bf2f652e0af1b996ade606"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesurface__context.html#a3c4eac39b1bf2f652e0af1b996ade606">surface_context_set_vector_potential</a> (this, io_unit, parallel)</td></tr>
-<tr class="memdesc:a3c4eac39b1bf2f652e0af1b996ade606"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the vector potential on the surface.  <a href="namespacesurface__context.html#a3c4eac39b1bf2f652e0af1b996ade606">More...</a><br /></td></tr>
-<tr class="separator:a3c4eac39b1bf2f652e0af1b996ade606"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb2c306596ff37792f6573b7ef1ccf92"><td class="memItemLeft" align="right" valign="top"><a id="aeb2c306596ff37792f6573b7ef1ccf92"></a>
-subroutine&#160;</td><td class="memItemRight" valign="bottom"><b>surface_context_write</b> (this, output_file, io_unit, parallel)</td></tr>
-<tr class="separator:aeb2c306596ff37792f6573b7ef1ccf92"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>. This module contains all the code necessary define a surface for cariddi to read a virtual surface from. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a69e617187f07b0acfd25327aed343587"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a69e617187f07b0acfd25327aed343587">&#9670;&nbsp;</a></span>surface_context_construct()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>) function, pointer surface_context::surface_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>surface_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Path and name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">surface_file_name</td><td>Path defining the surface to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed bmw_context_class object. </dd></dl>
-
-</div>
-</div>
-<a id="abd945f01c2af536ec0778af571c5682c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abd945f01c2af536ec0778af571c5682c">&#9670;&nbsp;</a></span>surface_context_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine surface_context::surface_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a bmw_context_class object. </p>
-<p>Deallocates memory and uninitializes a bmw_context_class object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A bmw_context_class instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3c4eac39b1bf2f652e0af1b996ade606"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3c4eac39b1bf2f652e0af1b996ade606">&#9670;&nbsp;</a></span>surface_context_set_vector_potential()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine surface_context::surface_context_set_vector_potential </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set the vector potential on the surface. </p>
-<p>This uses the biot-savart to set a vector potential on an arbitrary surface. At each point in the surface, the plasma current in volume integrated.</p>
-<p>b = mu0/4pi Int Int Int (Jsupu*esubu + Jsupv*esubv) / |x - xp|*signJ*J*da*du*dv (1)</p>
-<p>Where the primed (p) variables are the values on the last closed flux surface grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsurface__context_1_1surface__context__class.html">surface_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed bmw_context_class object. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">sxrch_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a 'sxrch.' file. The file format for these files are documented in <a class="el" href="sxrem_dot_sec.html">Soft X-Ray Diagnostic Dot File</a>.  
-<a href="namespacesxrch__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a1d1c61c5ce3570230efbc3dade765cba"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrch__dot.html#a1d1c61c5ce3570230efbc3dade765cba">sxrch_dot_read</a> (sxrch_file, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:a1d1c61c5ce3570230efbc3dade765cba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a soft x-ray diagnostic dot file.  <a href="namespacesxrch__dot.html#a1d1c61c5ce3570230efbc3dade765cba">More...</a><br /></td></tr>
-<tr class="separator:a1d1c61c5ce3570230efbc3dade765cba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a71b4b250f369c685b3d3aaf2bd5c5ba6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrch__dot.html#a71b4b250f369c685b3d3aaf2bd5c5ba6">sxrch_dot_parse_chord</a> (sxrch_dot_file_ref, coordinate_type, signals, signals_created, observed, sigma, weight, current_profile, first_index, use_geo, is_ti)</td></tr>
-<tr class="memdesc:a71b4b250f369c685b3d3aaf2bd5c5ba6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse soft x-ray diagnostic chord.  <a href="namespacesxrch__dot.html#a71b4b250f369c685b3d3aaf2bd5c5ba6">More...</a><br /></td></tr>
-<tr class="separator:a71b4b250f369c685b3d3aaf2bd5c5ba6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a 'sxrch.' file. The file format for these files are documented in <a class="el" href="sxrem_dot_sec.html">Soft X-Ray Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a71b4b250f369c685b3d3aaf2bd5c5ba6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a71b4b250f369c685b3d3aaf2bd5c5ba6">&#9670;&nbsp;</a></span>sxrch_dot_parse_chord()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrch_dot::sxrch_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>sxrch_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_profile</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_geo</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ti</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse soft x-ray diagnostic chord. </p>
-<p>Parses a single chord. Chords are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Starting point as three reals.</li>
-<li>Ending point as three reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrch_dot_file_ref</td><td>Reference to the sxrch. file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_profile</td><td>Index of sxrem profile used. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_geo</td><td>Chord contains geomtric factor. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ti</td><td>Chord used electron temperature. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1d1c61c5ce3570230efbc3dade765cba"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1d1c61c5ce3570230efbc3dade765cba">&#9670;&nbsp;</a></span>sxrch_dot_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrch_dot::sxrch_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrch_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read a soft x-ray diagnostic dot file. </p>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<p>Defines the base class of the type <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a0f725023edd776ab35b1d69a75f77d88"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a7951a757a028449cccdc36353c29715b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object.  <a href="namespacesxrem.html#a7951a757a028449cccdc36353c29715b">More...</a><br /></td></tr>
-<tr class="separator:a7951a757a028449cccdc36353c29715b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3504d2727f12e9edcc8589f775e81aac"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2be6f71767386367f40d12673d18a0b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a06ff81f3a17713d6e579a7ab928f40f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aba6707e07b7c065e4efc90e3f25cbfd0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a29a6589470914b44ff66f7131aa75e21"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a975b531b2db7f039c05543d060157668"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2d6df79edd9ff1537a1e94f4e4b0d442"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a2afcf039fae9ddf05156f09a39a34d2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a sxrem emiss signal and a cartesian position.  <a href="namespacesxrem.html#a2afcf039fae9ddf05156f09a39a34d2d">More...</a><br /></td></tr>
-<tr class="separator:a2afcf039fae9ddf05156f09a39a34d2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a011d9eb650506dd013a3d3bc1bca96e5"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem.html#a011d9eb650506dd013a3d3bc1bca96e5">sxrem_ti_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:a011d9eb650506dd013a3d3bc1bca96e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a sxrem ti signal and a cartesian position.  <a href="namespacesxrem.html#a011d9eb650506dd013a3d3bc1bca96e5">More...</a><br /></td></tr>
-<tr class="separator:a011d9eb650506dd013a3d3bc1bca96e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a>. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>diagnostic </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a7951a757a028449cccdc36353c29715b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7951a757a028449cccdc36353c29715b">&#9670;&nbsp;</a></span>sxrem_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrem::sxrem_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a83c285e77bb9794da47b0a4bace0501a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a83c285e77bb9794da47b0a4bace0501a">&#9670;&nbsp;</a></span>sxrem_emiss_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>) function, pointer sxrem::sxrem_emiss_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>start_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>end_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>geo</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>profile_number</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object for emission. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">start_path</td><td>Starting point of a sxrem chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">end_path</td><td>Ending point of a sxrem chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">geo</td><td>Geometric factor of the chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">profile_number</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a3504d2727f12e9edcc8589f775e81aac"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3504d2727f12e9edcc8589f775e81aac">&#9670;&nbsp;</a></span>sxrem_emiss_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrem::sxrem_emiss_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a975b531b2db7f039c05543d060157668"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a975b531b2db7f039c05543d060157668">&#9670;&nbsp;</a></span>sxrem_emiss_get_gp_i()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function sxrem::sxrem_emiss_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a sxrem emiss signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Integrates the gp_emiss_function_i function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="aa598fc2540cf0db5055533dacff48fb9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa598fc2540cf0db5055533dacff48fb9">&#9670;&nbsp;</a></span>sxrem_emiss_get_gp_s()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function sxrem::sxrem_emiss_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a sxrem emiss signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. This is the first signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance for the second signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a2afcf039fae9ddf05156f09a39a34d2d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2afcf039fae9ddf05156f09a39a34d2d">&#9670;&nbsp;</a></span>sxrem_emiss_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function sxrem::sxrem_emiss_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a sxrem emiss signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. This is the second signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a2be6f71767386367f40d12673d18a0b3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2be6f71767386367f40d12673d18a0b3">&#9670;&nbsp;</a></span>sxrem_emiss_get_modeled_signal()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) sxrem::sxrem_emiss_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled emiss signal. </p>
-<p>Calculates the soft x-ray emissivity signal by integrating along the chord path. The emissivity is provided by the sxr_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="aba6707e07b7c065e4efc90e3f25cbfd0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aba6707e07b7c065e4efc90e3f25cbfd0">&#9670;&nbsp;</a></span>sxrem_emiss_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function sxrem::sxrem_emiss_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the sxrem emiss type. </p>
-<p>Returns a description of the sxrem type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the sxrem type. </dd></dl>
-
-</div>
-</div>
-<a id="a0f725023edd776ab35b1d69a75f77d88"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0f725023edd776ab35b1d69a75f77d88">&#9670;&nbsp;</a></span>sxrem_ti_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>) function, pointer sxrem::sxrem_ti_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>start_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>end_path</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>profile_number</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object for ti. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">start_path</td><td>Starting point of a sxrem chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">end_path</td><td>Ending point of a sxrem chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">profile_number</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a98b972d24c615950906e2069b9c4f8ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a98b972d24c615950906e2069b9c4f8ae">&#9670;&nbsp;</a></span>sxrem_ti_get_gp_i()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function sxrem::sxrem_ti_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td></td><td></td>
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-<p>Gets the guassian process kernel for a sxrem ti signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Integrates the gp_ti_function_i function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a2d6df79edd9ff1537a1e94f4e4b0d442"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2d6df79edd9ff1537a1e94f4e4b0d442">&#9670;&nbsp;</a></span>sxrem_ti_get_gp_s()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function sxrem::sxrem_ti_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
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-
-<p>Gets the guassian process kernel for a sxrem ti signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. This is the first signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal</td><td>A signal_class instance for the second signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a011d9eb650506dd013a3d3bc1bca96e5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a011d9eb650506dd013a3d3bc1bca96e5">&#9670;&nbsp;</a></span>sxrem_ti_get_gp_x()</h2>
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-          <td class="memname">real (rprec) function sxrem::sxrem_ti_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a sxrem ti signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. This is the second signal.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__emiss__class.html">sxrem_emiss_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a06ff81f3a17713d6e579a7ab928f40f4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a06ff81f3a17713d6e579a7ab928f40f4">&#9670;&nbsp;</a></span>sxrem_ti_get_modeled_signal()</h2>
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-          <td class="memname">real (rprec) function, dimension(4) sxrem::sxrem_ti_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled ion temperature signal. </p>
-<p>Calculates the soft x-ray emissivity/ion temperature signal by integrating along the chord path. The emissivity is provided by the ti_function.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a29a6589470914b44ff66f7131aa75e21"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a29a6589470914b44ff66f7131aa75e21">&#9670;&nbsp;</a></span>sxrem_ti_get_type()</h2>
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-<div class="memitem">
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-          <td class="memname">character (len=data_name_length) function sxrem::sxrem_ti_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the sxrem emiss type. </p>
-<p>Returns a description of the sxrem type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem_ti_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the sxrem type. </dd></dl>
-
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-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">sxrem_ratio Module Reference</div>  </div>
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-
-<p>Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity profile. This signal feeds back the temperature profile at a specified positon.  
-<a href="namespacesxrem__ratio.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a> signal.  <a href="structsxrem__ratio_1_1sxrem__ratio__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a6a7803b872fb585e2d54e6308e481938"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#a6a7803b872fb585e2d54e6308e481938">sxrem_ratio_construct</a> (x_cart, indices)</td></tr>
-<tr class="memdesc:a6a7803b872fb585e2d54e6308e481938"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object.  <a href="namespacesxrem__ratio.html#a6a7803b872fb585e2d54e6308e481938">More...</a><br /></td></tr>
-<tr class="separator:a6a7803b872fb585e2d54e6308e481938"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ade9268caf165fd7b6d80bdc3c1862277"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#ade9268caf165fd7b6d80bdc3c1862277">sxrem_ratio_destruct</a> (this)</td></tr>
-<tr class="memdesc:ade9268caf165fd7b6d80bdc3c1862277"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object.  <a href="namespacesxrem__ratio.html#ade9268caf165fd7b6d80bdc3c1862277">More...</a><br /></td></tr>
-<tr class="separator:ade9268caf165fd7b6d80bdc3c1862277"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abdecaf456c565af7a11370e466dc90ae"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#abdecaf456c565af7a11370e466dc90ae">sxrem_ratio_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:abdecaf456c565af7a11370e466dc90ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespacesxrem__ratio.html#abdecaf456c565af7a11370e466dc90ae">More...</a><br /></td></tr>
-<tr class="separator:abdecaf456c565af7a11370e466dc90ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8bd12c0a8d0c7f290f978e4059f7dd28"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#a8bd12c0a8d0c7f290f978e4059f7dd28">sxrem_ratio_get_observed_signal</a> (this, a_model)</td></tr>
-<tr class="memdesc:a8bd12c0a8d0c7f290f978e4059f7dd28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the observed signal.  <a href="namespacesxrem__ratio.html#a8bd12c0a8d0c7f290f978e4059f7dd28">More...</a><br /></td></tr>
-<tr class="separator:a8bd12c0a8d0c7f290f978e4059f7dd28"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3334120e426e0f3524887db26808b269"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#a3334120e426e0f3524887db26808b269">sxrem_ratio_get_type</a> (this)</td></tr>
-<tr class="memdesc:a3334120e426e0f3524887db26808b269"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the feedback type.  <a href="namespacesxrem__ratio.html#a3334120e426e0f3524887db26808b269">More...</a><br /></td></tr>
-<tr class="separator:a3334120e426e0f3524887db26808b269"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac58b81566f9518d74dea9bedf069cacf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio.html#ac58b81566f9518d74dea9bedf069cacf">sxrem_ratio_write_auxiliary</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:ac58b81566f9518d74dea9bedf069cacf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out auxiliary signal information to an output file.  <a href="namespacesxrem__ratio.html#ac58b81566f9518d74dea9bedf069cacf">More...</a><br /></td></tr>
-<tr class="separator:ac58b81566f9518d74dea9bedf069cacf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity profile. This signal feeds back the temperature profile at a specified positon. </p>
-<dl class="section user"><dt>Super Class:</dt><dd>feedback </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a6a7803b872fb585e2d54e6308e481938"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6a7803b872fb585e2d54e6308e481938">&#9670;&nbsp;</a></span>sxrem_ratio_construct()</h2>
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-          <td class="memname">class (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>) function, pointer sxrem_ratio::sxrem_ratio_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-          <td class="paramname"><em>indices</em>&#160;</td>
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-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Radial position to feedback the soft x-ray emission from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>Indicies of the two cords. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ade9268caf165fd7b6d80bdc3c1862277"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ade9268caf165fd7b6d80bdc3c1862277">&#9670;&nbsp;</a></span>sxrem_ratio_destruct()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine sxrem_ratio::sxrem_ratio_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="abdecaf456c565af7a11370e466dc90ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abdecaf456c565af7a11370e466dc90ae">&#9670;&nbsp;</a></span>sxrem_ratio_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) sxrem_ratio::sxrem_ratio_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled signal. </p>
-<p>The modeled signal is the ratio of the soft x-ray emissivity profiles.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a8bd12c0a8d0c7f290f978e4059f7dd28"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8bd12c0a8d0c7f290f978e4059f7dd28">&#9670;&nbsp;</a></span>sxrem_ratio_get_observed_signal()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function sxrem_ratio::sxrem_ratio_get_observed_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the observed signal. </p>
-<p>The observed signal is the ratio computed as the ratio as a function of the temperature.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The observed value. </dd></dl>
-
-</div>
-</div>
-<a id="a3334120e426e0f3524887db26808b269"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3334120e426e0f3524887db26808b269">&#9670;&nbsp;</a></span>sxrem_ratio_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function sxrem_ratio::sxrem_ratio_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the feedback type. </p>
-<p>Returns a description of the feedback type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the feedback type. </dd></dl>
-
-</div>
-</div>
-<a id="ac58b81566f9518d74dea9bedf069cacf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac58b81566f9518d74dea9bedf069cacf">&#9670;&nbsp;</a></span>sxrem_ratio_write_auxiliary()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrem_ratio::sxrem_ratio_write_auxiliary </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out auxiliary signal information to an output file. </p>
-<p>Writes out the s_name and coefficient of the combined signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structsxrem__ratio_1_1sxrem__ratio__class.html">sxrem_ratio_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">sxrem_ratio_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a '<a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>.' file. The file format for these files are documented in <a class="el" href="sxrem_ratio_dot_sec.html">Soft X-ray Emissivity Ratio Dot File</a>.  
-<a href="namespacesxrem__ratio__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ad759c01e4c13062892dd26b649ce2b64"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio__dot.html#ad759c01e4c13062892dd26b649ce2b64">sxrem_ratio_dot_read</a> (sxrem_ratio_file, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:ad759c01e4c13062892dd26b649ce2b64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an sxrem ratio dot file.  <a href="namespacesxrem__ratio__dot.html#ad759c01e4c13062892dd26b649ce2b64">More...</a><br /></td></tr>
-<tr class="separator:ad759c01e4c13062892dd26b649ce2b64"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af8bab8b0e2f8f538b13b74531db89560"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesxrem__ratio__dot.html#af8bab8b0e2f8f538b13b74531db89560">sxrem_ratio_dot_parse_chord</a> (sxrem_ratio_dot_file_ref, coordinate_type, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:af8bab8b0e2f8f538b13b74531db89560"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse soft x-ray ratio point.  <a href="namespacesxrem__ratio__dot.html#af8bab8b0e2f8f538b13b74531db89560">More...</a><br /></td></tr>
-<tr class="separator:af8bab8b0e2f8f538b13b74531db89560"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a '<a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>.' file. The file format for these files are documented in <a class="el" href="sxrem_ratio_dot_sec.html">Soft X-ray Emissivity Ratio Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="af8bab8b0e2f8f538b13b74531db89560"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af8bab8b0e2f8f538b13b74531db89560">&#9670;&nbsp;</a></span>sxrem_ratio_dot_parse_chord()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrem_ratio_dot::sxrem_ratio_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type(<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>sxrem_ratio_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse soft x-ray ratio point. </p>
-<p>Parses a signle chord. Chords are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Starting point as three reals.</li>
-<li>Ending point as three reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_ratio_dot_file_ref</td><td>Name of the <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a> file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad759c01e4c13062892dd26b649ce2b64"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad759c01e4c13062892dd26b649ce2b64">&#9670;&nbsp;</a></span>sxrem_ratio_dot_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine sxrem_ratio_dot::sxrem_ratio_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>sxrem_ratio_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-<p>Implements thomson scattering diagnostic. Defines the base class of the type <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a></td></tr>
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-<tr class="separator:a3d42a4d600168c3c53fb28a3db35a858"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2f5aea84ecb67cb6f085177a914ab711"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a0beaae26008bb46c750e4b73cc39005c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c69b8158aa88dbf4bb5227044c9c4dd"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a1c69b8158aa88dbf4bb5227044c9c4dd">thomson_get_type</a> (this)</td></tr>
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-<tr class="separator:a1c69b8158aa88dbf4bb5227044c9c4dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab639ad3d6b0cae850a7226772a513860"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860">thomson_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:ab639ad3d6b0cae850a7226772a513860"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson signal and a signal.  <a href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860">More...</a><br /></td></tr>
-<tr class="separator:ab639ad3d6b0cae850a7226772a513860"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa100d27e0798f8cafd946b05a0fe25a6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#aa100d27e0798f8cafd946b05a0fe25a6">thomson_te_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:aa100d27e0798f8cafd946b05a0fe25a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson te signal and a position.  <a href="namespacethomson.html#aa100d27e0798f8cafd946b05a0fe25a6">More...</a><br /></td></tr>
-<tr class="separator:aa100d27e0798f8cafd946b05a0fe25a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad857caf892011a452b4550c96744c7e2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ad857caf892011a452b4550c96744c7e2">thomson_te_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
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-<tr class="separator:ad857caf892011a452b4550c96744c7e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ad9f23e91103f97fa00d8beff5e4b5ce5">thomson_ne_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson ne signal and a position.  <a href="namespacethomson.html#ad9f23e91103f97fa00d8beff5e4b5ce5">More...</a><br /></td></tr>
-<tr class="separator:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ac75d9e1d51a15dcc51646e98b3268ca8">thomson_ne_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson ne signal and a cartesian position.  <a href="namespacethomson.html#ac75d9e1d51a15dcc51646e98b3268ca8">More...</a><br /></td></tr>
-<tr class="separator:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="memitem:acfc8ae82895e70907a183578f4cc576e"><td class="memItemLeft" align="right" valign="top"><a id="acfc8ae82895e70907a183578f4cc576e"></a>
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-<tr class="memdesc:acfc8ae82895e70907a183578f4cc576e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assert message for pressure methods. <br /></td></tr>
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-<div class="textblock"><p>Implements thomson scattering diagnostic. Defines the base class of the type <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a>. </p>
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-<a id="ad46f3991fb572fc3bf469c7b65ab2513"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad46f3991fb572fc3bf469c7b65ab2513">&#9670;&nbsp;</a></span>thomson_destruct()</h2>
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-          <td class="memname">subroutine thomson::thomson_destruct </td>
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-
-<p>Deconstruct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object. </p>
-<p>Uninitializes a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab639ad3d6b0cae850a7226772a513860"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab639ad3d6b0cae850a7226772a513860">&#9670;&nbsp;</a></span>thomson_get_gp_s()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function thomson::thomson_get_gp_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structsignal_1_1signal__class.html">signal_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>signal</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a thomson signal and a signal. </p>
-<p>Calculates the guassian process kernel between the signal and a signal. Calls back to the <a class="el" href="namespacesignal.html">signal</a> module to call the other signal. This does not support pressure measurements.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">context</td><td>A signal_class instance. </td></tr>
-    <tr><td class="paramdir"></td><td class="paramname">callback</td><td>Function pointer to call back to signal module. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a1c69b8158aa88dbf4bb5227044c9c4dd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1c69b8158aa88dbf4bb5227044c9c4dd">&#9670;&nbsp;</a></span>thomson_get_type()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function thomson::thomson_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the thomson type. </p>
-<p>Returns a description of the thomson type for use when writting output files.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the thomson type. </dd></dl>
-
-</div>
-</div>
-<a id="a8c8b7ae3490784655862d004c75dfcfc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8c8b7ae3490784655862d004c75dfcfc">&#9670;&nbsp;</a></span>thomson_ne_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a>) function, pointer thomson::thomson_ne_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>xcart</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object measureing density. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcart</td><td>The measurement point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ad9f23e91103f97fa00d8beff5e4b5ce5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad9f23e91103f97fa00d8beff5e4b5ce5">&#9670;&nbsp;</a></span>thomson_ne_get_gp_i()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function thomson::thomson_ne_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a thomson ne signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Denisty kernels are provided by model::model_get_gp_ne. This does not support pressure measurements.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="ac75d9e1d51a15dcc51646e98b3268ca8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac75d9e1d51a15dcc51646e98b3268ca8">&#9670;&nbsp;</a></span>thomson_ne_get_gp_x()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function thomson::thomson_ne_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a thomson ne signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Denisty kernels are provided by model::model_get_gp_ne. This is the second signal so x_cart goes in the second position and this signal in the first.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a2f5aea84ecb67cb6f085177a914ab711"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f5aea84ecb67cb6f085177a914ab711">&#9670;&nbsp;</a></span>thomson_ne_get_modeled_signal()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) thomson::thomson_ne_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled ne signal. </p>
-<p>Calculates the modeled signal at a point. Density is provided by model::model_get_ne.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__ne__class.html">thomson_ne_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a6c080c16c881b53d106ce8cecd386b37"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c080c16c881b53d106ce8cecd386b37">&#9670;&nbsp;</a></span>thomson_p_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a>) function, pointer thomson::thomson_p_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>xcart</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object measureing pressure. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcart</td><td>The measurement point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a0beaae26008bb46c750e4b73cc39005c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0beaae26008bb46c750e4b73cc39005c">&#9670;&nbsp;</a></span>thomson_p_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) thomson::thomson_p_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled pressure signal. </p>
-<p>Calculates the modeled signal at a point. Pressure is provided by model::model_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-<a id="a1cc5dc0ccb2d5b512af08205eca1e16b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1cc5dc0ccb2d5b512af08205eca1e16b">&#9670;&nbsp;</a></span>thomson_te_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a>) function, pointer thomson::thomson_te_construct </td>
-          <td>(</td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>xcart</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object measureing temperature. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">xcart</td><td>The measurement point. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="aa100d27e0798f8cafd946b05a0fe25a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa100d27e0798f8cafd946b05a0fe25a6">&#9670;&nbsp;</a></span>thomson_te_get_gp_i()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function thomson::thomson_te_get_gp_i </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a thomson te signal and a position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Index of the position for the kernel. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the position and the signal. </dd></dl>
-
-</div>
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-<a id="ad857caf892011a452b4550c96744c7e2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad857caf892011a452b4550c96744c7e2">&#9670;&nbsp;</a></span>thomson_te_get_gp_x()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function thomson::thomson_te_get_gp_x </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the guassian process kernel for a thomson te signal and a cartesian position. </p>
-<p>Calculates the guassian process kernel between the signal and the position. Temperature kernels are provided by model::model_get_gp_te. This is the second signal so x_cart goes in the second position and this signal in the first.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>The cartesian position of to get the kernel at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>State flags to send to the kernel. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Kernel value for the signal and the signal. </dd></dl>
-
-</div>
-</div>
-<a id="a3d42a4d600168c3c53fb28a3db35a858"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3d42a4d600168c3c53fb28a3db35a858">&#9670;&nbsp;</a></span>thomson_te_get_modeled_signal()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(4) thomson::thomson_te_get_modeled_signal </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(out)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(4), intent(in)&#160;</td>
-          <td class="paramname"><em>last_value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculates the modeled te signal. </p>
-<p>Calculates the modeled signal at a point. Temperature is provided by model::model_get_te.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structthomson_1_1thomson__te__class.html">thomson_te_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">sigma</td><td>The modeled sigma. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">last_value</td><td>Last good value in case the signal did not change. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The model value. </dd></dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">thscte_dot Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Module for opening and reading a 'thscte.' file. The file format for these files are documented in <a class="el" href="thomson_dot_sec.html">Thomson Scattering Diagnostic Dot File</a>.  
-<a href="namespacethscte__dot.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a7c177423fb3b2ea5d7a06293177280de"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethscte__dot.html#a7c177423fb3b2ea5d7a06293177280de">thscte_dot_read</a> (thscte_file, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:a7c177423fb3b2ea5d7a06293177280de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an thomson scattering diagnostic dot file.  <a href="namespacethscte__dot.html#a7c177423fb3b2ea5d7a06293177280de">More...</a><br /></td></tr>
-<tr class="separator:a7c177423fb3b2ea5d7a06293177280de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7e0fba6bc6e693eea2930045b92124a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethscte__dot.html#ab7e0fba6bc6e693eea2930045b92124a">thscte_dot_parse_chord</a> (thscte_dot_file_ref, coordinate_type, point_type, signals, signals_created, observed, sigma, weight, first_index)</td></tr>
-<tr class="memdesc:ab7e0fba6bc6e693eea2930045b92124a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse thomson scattering diagnostic chord.  <a href="namespacethscte__dot.html#ab7e0fba6bc6e693eea2930045b92124a">More...</a><br /></td></tr>
-<tr class="separator:ab7e0fba6bc6e693eea2930045b92124a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Module for opening and reading a 'thscte.' file. The file format for these files are documented in <a class="el" href="thomson_dot_sec.html">Thomson Scattering Diagnostic Dot File</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ab7e0fba6bc6e693eea2930045b92124a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab7e0fba6bc6e693eea2930045b92124a">&#9670;&nbsp;</a></span>thscte_dot_parse_chord()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine thscte_dot::thscte_dot_parse_chord </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structsignal__dot_1_1signal__dot__file.html">signal_dot_file</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>thscte_dot_file_ref</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*)&#160;</td>
-          <td class="paramname"><em>coordinate_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=1)&#160;</td>
-          <td class="paramname"><em>point_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse thomson scattering diagnostic chord. </p>
-<p>Parses a signle chord. Chords are laid out as,</p>
-<ul>
-<li>chord_name</li>
-<li>Starting point as three reals.</li>
-<li>Ending point as three reals.</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">thscte_dot_file_ref</td><td>Reference of the thscte file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coordinate_type</td><td>Specifies the cartesian or cylindrical coordinate type. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">point_type</td><td>Specifies a 't'emperature, 'd'ensity or 'p'ressure point. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">scale_index</td><td>Index of the signal scale factor. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7c177423fb3b2ea5d7a06293177280de"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7c177423fb3b2ea5d7a06293177280de">&#9670;&nbsp;</a></span>thscte_dot_read()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine thscte_dot::thscte_dot_read </td>
-          <td>(</td>
-          <td class="paramtype">character (len=path_length), intent(in)&#160;</td>
-          <td class="paramname"><em>thscte_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structsignal_1_1signal__pointer.html">signal_pointer</a>), dimension(:), intent(inout)&#160;</td>
-          <td class="paramname"><em>signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>observed</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>sigma</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>weight</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>first_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Read an thomson scattering diagnostic dot file. </p>
-<p>Parses the structure of a dignostic dot file and constructs a <a class="el" href="namespacethomson.html">thomson</a> object. Each chord is parsed by <a class="el" href="namespacethscte__dot.html#ab7e0fba6bc6e693eea2930045b92124a">thscte_dot_parse_chord</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">thscte_file</td><td>Name of the thscte. file. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals</td><td>Array of pointers to the a signal </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Number valid signals in the array, or index of the last signal created. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">observed</td><td>Array of observed values. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sigma</td><td>Array of observed sigma values </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">weight</td><td>Array of signal weight values </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">first_index</td><td>Index of the first instance of an intpol signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
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-<p>Defines the base class of the type <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral.  
-<a href="namespaceunprimed__grid.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a unprimed grid. This is grid the volume integral will be summed over.  <a href="structunprimed__grid_1_1unprimed__grid__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a5ea5f27e4b05618130f5fd1eb66a704e"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceunprimed__grid.html#a5ea5f27e4b05618130f5fd1eb66a704e">unprimed_grid_construct_m</a> (mgrid, pgrid, p_start, p_end, parallel, io_unit)</td></tr>
-<tr class="memdesc:a5ea5f27e4b05618130f5fd1eb66a704e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object.  <a href="namespaceunprimed__grid.html#a5ea5f27e4b05618130f5fd1eb66a704e">More...</a><br /></td></tr>
-<tr class="separator:a5ea5f27e4b05618130f5fd1eb66a704e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e69a927426e2800eb6d010e97d79459"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceunprimed__grid.html#a0e69a927426e2800eb6d010e97d79459">unprimed_grid_construct_a</a> (mgrid, pgrid, r_grid, z_grid, dphi, parallel, io_unit)</td></tr>
-<tr class="memdesc:a0e69a927426e2800eb6d010e97d79459"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object at specfied points.  <a href="namespaceunprimed__grid.html#a0e69a927426e2800eb6d010e97d79459">More...</a><br /></td></tr>
-<tr class="separator:a0e69a927426e2800eb6d010e97d79459"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a06882edaf310155f4db1778ce0d34f5a"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceunprimed__grid.html#a06882edaf310155f4db1778ce0d34f5a">unprimed_grid_construct_c</a> (mgrid, pgrid, pgrid_vac, p_start, p_end, parallel, io_unit)</td></tr>
-<tr class="memdesc:a06882edaf310155f4db1778ce0d34f5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object.  <a href="namespaceunprimed__grid.html#a06882edaf310155f4db1778ce0d34f5a">More...</a><br /></td></tr>
-<tr class="separator:a06882edaf310155f4db1778ce0d34f5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a874746bf62bb25b8c8013f8c4268039e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceunprimed__grid.html#a874746bf62bb25b8c8013f8c4268039e">unprimed_grid_destruct</a> (this)</td></tr>
-<tr class="memdesc:a874746bf62bb25b8c8013f8c4268039e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object.  <a href="namespaceunprimed__grid.html#a874746bf62bb25b8c8013f8c4268039e">More...</a><br /></td></tr>
-<tr class="separator:a874746bf62bb25b8c8013f8c4268039e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>. This contains the state variables to define the currents and positions of the volumn integral. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a0e69a927426e2800eb6d010e97d79459"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0e69a927426e2800eb6d010e97d79459">&#9670;&nbsp;</a></span>unprimed_grid_construct_a()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_construct_a </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>r_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>z_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>dphi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object at specfied points. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. The primed grid is supplied as arbitrary r and z positions with a uniformly spaced phi grid. Since the primed grid is arbitrary, this function does not compute the magnetic field components. The middle index represents phi positions.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_grid</td><td>3D Array of r positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_grid</td><td>3D Array of z positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dphi</td><td>Phi grid spacing. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a06882edaf310155f4db1778ce0d34f5a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a06882edaf310155f4db1778ce0d34f5a">&#9670;&nbsp;</a></span>unprimed_grid_construct_c()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_construct_c </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid_vac</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. Magnetic field components are provided on a truncated grid. Due to the central differencing, field componetents cannot be provided for first and last points on the r and z grids.</p>
-<p>This version removes vacuum current contribuitons.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid_vac</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object for the vacuum correction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_start</td><td>Starting phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_end</td><td>Ending phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a5ea5f27e4b05618130f5fd1eb66a704e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5ea5f27e4b05618130f5fd1eb66a704e">&#9670;&nbsp;</a></span>unprimed_grid_construct_m()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_construct_m </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. Magnetic field components are provided on a truncated grid. Due to the central differencing, field componetents cannot be provided for first and last points on the r and z grids.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_start</td><td>Starting phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_end</td><td>Ending phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a874746bf62bb25b8c8013f8c4268039e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a874746bf62bb25b8c8013f8c4268039e">&#9670;&nbsp;</a></span>unprimed_grid_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine unprimed_grid::unprimed_grid_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">utilities Module Reference</div>  </div>
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-
-<p>This file contains utilities for converting the siesta grids.  
-<a href="namespaceutilities.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1to__full__mesh.html">to_full_mesh</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to convert between half and full mesh using either <a class="el" href="interfaceutilities_1_1to__full__mesh.html#a0c6757ea338f495f18375613bd2a6293">to_full_mesh2</a> or <a class="el" href="interfaceutilities_1_1to__full__mesh.html#ad18ac9c59de0be0ef44492ebe05a1ea7">to_full_mesh3</a>.  <a href="interfaceutilities_1_1to__full__mesh.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1to__half__mesh.html">to_half_mesh</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to convert between full and half mesh using either <a class="el" href="interfaceutilities_1_1to__half__mesh.html">to_half_mesh</a> or <a class="el" href="interfaceutilities_1_1to__half__mesh.html#a17173a22873cc4031419a3f79fcb5abe">to_half_mesh_p</a>.  <a href="interfaceutilities_1_1to__half__mesh.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1gradienthalf.html">gradienthalf</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to take the gradianet from full to half mesh using either GradientHalf or GradientHalf_p.  <a href="interfaceutilities_1_1gradienthalf.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to take the curl on a half mesh quantity and return a full mesh using either <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a> or <a class="el" href="interfaceutilities_1_1curl__htof.html#a70004de9e4acdbf6dff1a0ead5d8bb54">curl_htof_targ</a>.  <a href="interfaceutilities_1_1curl__htof.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface to set the fouier conditions on a quantity for either scalar <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">set_bndy_fouier_m0</a> or vector <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html#aa6053635f4d12e9d6be78a9089ca9470">set_bndy_fouier_m0_vec</a> quantities.  <a href="interfaceutilities_1_1set__bndy__fouier__m0.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
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-<tr class="memdesc:a01ba55178440836b2eeb8dc1ea00b222"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the gradient to the half mesh from a full mesh quantity.  <a href="namespaceutilities.html#a01ba55178440836b2eeb8dc1ea00b222">More...</a><br /></td></tr>
-<tr class="separator:a01ba55178440836b2eeb8dc1ea00b222"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a930e09a0285c4594d26ccc7489eca6c5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a930e09a0285c4594d26ccc7489eca6c5">gradienthalf_p</a> (gradienth, vecf)</td></tr>
-<tr class="memdesc:a930e09a0285c4594d26ccc7489eca6c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the gradient to the half mesh from a full mesh quantity.  <a href="namespaceutilities.html#a930e09a0285c4594d26ccc7489eca6c5">More...</a><br /></td></tr>
-<tr class="separator:a930e09a0285c4594d26ccc7489eca6c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01bacb665908fabbf43dabb56cae2e20"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a01bacb665908fabbf43dabb56cae2e20">gradientfull</a> (gradientf, vech)</td></tr>
-<tr class="memdesc:a01bacb665908fabbf43dabb56cae2e20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the gradient to the full mesh from a half mesh quantity.  <a href="namespaceutilities.html#a01bacb665908fabbf43dabb56cae2e20">More...</a><br /></td></tr>
-<tr class="separator:a01bacb665908fabbf43dabb56cae2e20"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa56fb8ab863c6128f936e34a3028c8f0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#aa56fb8ab863c6128f936e34a3028c8f0">to_half_mesh</a> (vecf, vech)</td></tr>
-<tr class="memdesc:aa56fb8ab863c6128f936e34a3028c8f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrates a full mesh quantity to the half mesh.  <a href="namespaceutilities.html#aa56fb8ab863c6128f936e34a3028c8f0">More...</a><br /></td></tr>
-<tr class="separator:aa56fb8ab863c6128f936e34a3028c8f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a396f6885db6a18350a572b6df1b58195"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a396f6885db6a18350a572b6df1b58195">to_half_mesh_p</a> (vecf, vech)</td></tr>
-<tr class="memdesc:a396f6885db6a18350a572b6df1b58195"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrates a full mesh quantity to the half mesh.  <a href="namespaceutilities.html#a396f6885db6a18350a572b6df1b58195">More...</a><br /></td></tr>
-<tr class="separator:a396f6885db6a18350a572b6df1b58195"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa39bbeefd09bd82b946d1ac38e7856ae"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#aa39bbeefd09bd82b946d1ac38e7856ae">to_full_mesh3</a> (vech, vecf)</td></tr>
-<tr class="memdesc:aa39bbeefd09bd82b946d1ac38e7856ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrate a three dimensional quantity form the half mesh to the full mesh.  <a href="namespaceutilities.html#aa39bbeefd09bd82b946d1ac38e7856ae">More...</a><br /></td></tr>
-<tr class="separator:aa39bbeefd09bd82b946d1ac38e7856ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a001873e5aa19fce5d04482dde1e081bd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a001873e5aa19fce5d04482dde1e081bd">to_full_mesh2</a> (vech, vecf)</td></tr>
-<tr class="memdesc:a001873e5aa19fce5d04482dde1e081bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Migrate a two dimensional quantity form the half mesh to the full mesh.  <a href="namespaceutilities.html#a001873e5aa19fce5d04482dde1e081bd">More...</a><br /></td></tr>
-<tr class="separator:a001873e5aa19fce5d04482dde1e081bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a020ef8a2392cbc73ff8f3ffdb0ec2b24"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a020ef8a2392cbc73ff8f3ffdb0ec2b24">curl_ftoh</a> (asubsmnf, asubumnf, asubvmnf,</td></tr>
-<tr class="memdesc:a020ef8a2392cbc73ff8f3ffdb0ec2b24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute curl of the full grid quantity a on the half grid.  <a href="namespaceutilities.html#a020ef8a2392cbc73ff8f3ffdb0ec2b24">More...</a><br /></td></tr>
-<tr class="separator:a020ef8a2392cbc73ff8f3ffdb0ec2b24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4c9976c2bc582dc3d1eaa214623e4311"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a4c9976c2bc582dc3d1eaa214623e4311">curl_htof</a> (bsubsmnh, bsubumnh, bsubvmnh,</td></tr>
-<tr class="memdesc:a4c9976c2bc582dc3d1eaa214623e4311"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute curl of the half grid quantity a on the full grid.  <a href="namespaceutilities.html#a4c9976c2bc582dc3d1eaa214623e4311">More...</a><br /></td></tr>
-<tr class="separator:a4c9976c2bc582dc3d1eaa214623e4311"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acd65733c2b544b3a4c4e593b8b45ff32"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#acd65733c2b544b3a4c4e593b8b45ff32">curl_htof_targ</a> (bsubsmnh, bsubumnh, bsubvmnh,</td></tr>
-<tr class="memdesc:acd65733c2b544b3a4c4e593b8b45ff32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert allocatable to pointer for use in <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a>.  <a href="namespaceutilities.html#acd65733c2b544b3a4c4e593b8b45ff32">More...</a><br /></td></tr>
-<tr class="separator:acd65733c2b544b3a4c4e593b8b45ff32"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8f338cb8baf6e5037a88ab897404521"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#aa8f338cb8baf6e5037a88ab897404521">set_bndy_half_to_full</a> (amnh, amnf, nsmin, <a class="el" href="classparity.html">parity</a>, f</td></tr>
-<tr class="memdesc:aa8f338cb8baf6e5037a88ab897404521"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set fouier boundary conditions for full grid quantity converted from half grid.  <a href="namespaceutilities.html#aa8f338cb8baf6e5037a88ab897404521">More...</a><br /></td></tr>
-<tr class="separator:aa8f338cb8baf6e5037a88ab897404521"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad6e45cf4046669d9fabd21ebd8d16f1b"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#ad6e45cf4046669d9fabd21ebd8d16f1b">set_bndy_half_to_full_ds</a> (amnh, amnf_ds, nsmin, par</td></tr>
-<tr class="memdesc:ad6e45cf4046669d9fabd21ebd8d16f1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set fouier boundary conditions for full grid radial derivative quantity converted from half grid.  <a href="namespaceutilities.html#ad6e45cf4046669d9fabd21ebd8d16f1b">More...</a><br /></td></tr>
-<tr class="separator:ad6e45cf4046669d9fabd21ebd8d16f1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aefb81c8bfa3087cdaad4c2617e4383df"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#aefb81c8bfa3087cdaad4c2617e4383df">set_bndy_full_origin</a> (amnsf, amnuf, amnvf, flags)</td></tr>
-<tr class="memdesc:aefb81c8bfa3087cdaad4c2617e4383df"><td class="mdescLeft">&#160;</td><td class="mdescRight">Apply origin vector boundary conditions.  <a href="namespaceutilities.html#aefb81c8bfa3087cdaad4c2617e4383df">More...</a><br /></td></tr>
-<tr class="separator:aefb81c8bfa3087cdaad4c2617e4383df"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e6a8da8f9874f6e6fcec023e6964c2f"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a9e6a8da8f9874f6e6fcec023e6964c2f">set_bndy_fouier_m0</a> (amn, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a9e6a8da8f9874f6e6fcec023e6964c2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set vector fourier conditions.  <a href="namespaceutilities.html#a9e6a8da8f9874f6e6fcec023e6964c2f">More...</a><br /></td></tr>
-<tr class="separator:a9e6a8da8f9874f6e6fcec023e6964c2f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a969bf9187692dd68e7b48a00f70f372d"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a969bf9187692dd68e7b48a00f70f372d">set_bndy_fouier_m0_vec</a> (amns, amnu, amnv, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a969bf9187692dd68e7b48a00f70f372d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set vector fourier conditions.  <a href="namespaceutilities.html#a969bf9187692dd68e7b48a00f70f372d">More...</a><br /></td></tr>
-<tr class="separator:a969bf9187692dd68e7b48a00f70f372d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5673acaafc8662d0527dbe1b8a28b790"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a5673acaafc8662d0527dbe1b8a28b790">div_h</a> (jbsupsmnh, jbsupumnh, jbsupvmnh,</td></tr>
-<tr class="memdesc:a5673acaafc8662d0527dbe1b8a28b790"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the divergence of a half grid quantity.  <a href="namespaceutilities.html#a5673acaafc8662d0527dbe1b8a28b790">More...</a><br /></td></tr>
-<tr class="separator:a5673acaafc8662d0527dbe1b8a28b790"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a365a15cb83921febb9278a6a9b158079"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a365a15cb83921febb9278a6a9b158079">test_utilities</a> ()</td></tr>
-<tr class="memdesc:a365a15cb83921febb9278a6a9b158079"><td class="mdescLeft">&#160;</td><td class="mdescRight">Test utility routines.  <a href="namespaceutilities.html#a365a15cb83921febb9278a6a9b158079">More...</a><br /></td></tr>
-<tr class="separator:a365a15cb83921febb9278a6a9b158079"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3595a7fa86d5b7714483cc9cb05ff00f"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a3595a7fa86d5b7714483cc9cb05ff00f">test_div</a> (jbsupsmnh, jbsupumnh, jbsupvmnh, <a class="el" href="classparity.html">parity</a>, nsmin,</td></tr>
-<tr class="memdesc:a3595a7fa86d5b7714483cc9cb05ff00f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Test divergence of a half grid quantity.  <a href="namespaceutilities.html#a3595a7fa86d5b7714483cc9cb05ff00f">More...</a><br /></td></tr>
-<tr class="separator:a3595a7fa86d5b7714483cc9cb05ff00f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains utilities for converting the siesta grids. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a020ef8a2392cbc73ff8f3ffdb0ec2b24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a020ef8a2392cbc73ff8f3ffdb0ec2b24">&#9670;&nbsp;</a></span>curl_ftoh()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::curl_ftoh </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>asubsmnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>asubumnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>asubvmnf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute curl of the full grid quantity a on the half grid. </p>
-<p>The contravariant components of jac*Curl A are equal to</p>
-<p>sqrt(g)*B^k = dA_j/du^i - dA_i/du^j (j)</p>
-<p>for cyclic permutations of i,j,k. This routine does not remove the jacobian factor. The arrays must be passed in as ALLOCATABLE or POINTER to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">asubsmnf</td><td>Covariant vector in the s direction full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asubsmnf</td><td>Covariant vector in the u direction full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">asubsmnf</td><td>Covariant vector in the v direction full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsubsmnh</td><td>Contravariant vector in the s direction with jacobian factor half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsubsmnh</td><td>Contravariant vector in the u direction with jacobian factor half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jbsubsmnh</td><td>Contravariant vector in the v direction with jacobian factor half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4c9976c2bc582dc3d1eaa214623e4311"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4c9976c2bc582dc3d1eaa214623e4311">&#9670;&nbsp;</a></span>curl_htof()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine <a class="el" href="interfaceutilities_1_1curl__htof.html">utilities::curl_htof</a> </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute curl of the half grid quantity a on the full grid. </p>
-<p>The contravariant components of jac*Curl A are equal to</p>
-<p>sqrt(g)*K^k = dB_j/du^i - dB_i/du^j (j)</p>
-<p>for cyclic permutations of i,j,k. This routine does not remove the jacobian factor. The arrays must be passed in as ALLOCATABLE or POINTER to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">bsubsmnh</td><td>Covariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the s direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the u direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jKsubsmnf</td><td>Contravariant vector in the v direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsend</td><td>Ending row index. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acd65733c2b544b3a4c4e593b8b45ff32"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acd65733c2b544b3a4c4e593b8b45ff32">&#9670;&nbsp;</a></span>curl_htof_targ()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::curl_htof_targ </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>bsubvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Convert allocatable to pointer for use in <a class="el" href="interfaceutilities_1_1curl__htof.html">curl_htof</a>. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">Asubsmnh</td><td>Covariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the s direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the u direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">jBsubsmnf</td><td>Contravariant vector in the v direction with jacobian factor full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsend</td><td>Ending row index. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">curtor</td><td>Current enclosed at the boundary. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5673acaafc8662d0527dbe1b8a28b790"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5673acaafc8662d0527dbe1b8a28b790">&#9670;&nbsp;</a></span>div_h()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::div_h </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>jbsupvmnh</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Compute the divergence of a half grid quantity. </p>
-<p>This operator is used for unit testing of the curl operator. Divergence is defined as</p>
-<p>DIV(B) = 1/sqrt(g)d/dx (JB^x} for x = s,u,v (1)</p>
-<p>Note for testing that divergence remains zero, add a 1/sqrt(g) term is not necessary to retain.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">jasupsmnh</td><td>Contravariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jasupsmnh</td><td>Contravariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jasupsmnh</td><td>Contravariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">divmnf</td><td>Diverence on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a01bacb665908fabbf43dabb56cae2e20"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01bacb665908fabbf43dabb56cae2e20">&#9670;&nbsp;</a></span>gradientfull()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::gradientfull </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>gradientf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculate the gradient to the full mesh from a half mesh quantity. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds. There are three scenarios we need to anticipate for the radial dimension. The easiest is when the upper bound of gradientf matches vech. Otherwise vech can be the full ns range of one more than the gradientf. To handle this an extra is calculated which can be a maximum of one.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gradientf</td><td>Gradient on the full grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vech</td><td>Half grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a01ba55178440836b2eeb8dc1ea00b222"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a01ba55178440836b2eeb8dc1ea00b222">&#9670;&nbsp;</a></span>gradienthalf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine <a class="el" href="interfaceutilities_1_1gradienthalf.html">utilities::gradienthalf</a> </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>gradienth</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculate the gradient to the half mesh from a full mesh quantity. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gradienth</td><td>Gradient on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a930e09a0285c4594d26ccc7489eca6c5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a930e09a0285c4594d26ccc7489eca6c5">&#9670;&nbsp;</a></span>gradienthalf_p()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::gradienthalf_p </td>
-          <td>(</td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>gradienth</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Calculate the gradient to the half mesh from a full mesh quantity. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds. Full vector is passed in as a pointer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">gradienth</td><td>Gradient on the half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9e6a8da8f9874f6e6fcec023e6964c2f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9e6a8da8f9874f6e6fcec023e6964c2f">&#9670;&nbsp;</a></span>set_bndy_fouier_m0()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine <a class="el" href="interfaceutilities_1_1set__bndy__fouier__m0.html">utilities::set_bndy_fouier_m0</a> </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amn</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set vector fourier conditions. </p>
-<p>For fouier modes for m=0 and for the negative n modes. The n=0 modes are zero for quantities with sin parity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amn</td><td>Fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fouier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a969bf9187692dd68e7b48a00f70f372d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a969bf9187692dd68e7b48a00f70f372d">&#9670;&nbsp;</a></span>set_bndy_fouier_m0_vec()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine utilities::set_bndy_fouier_m0_vec </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amns</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnu</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnv</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set vector fourier conditions. </p>
-<p>For fouier modes for m=0 and for the negative n modes. The n=0 modes are zero for quantities with sin parity.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amns</td><td>Fourier quantity for s component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnu</td><td>Fourier quantity for u component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnv</td><td>Fourier quantity for v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Fouier parity flag. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aefb81c8bfa3087cdaad4c2617e4383df"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aefb81c8bfa3087cdaad4c2617e4383df">&#9670;&nbsp;</a></span>set_bndy_full_origin()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine utilities::set_bndy_full_origin </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnsf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnuf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnvf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Apply origin vector boundary conditions. </p>
-<p>At the center of the grid, a vector quantity should have only m=1 modes in the s direction, no modes in the u direction and only m=0 modes in the v direction. See siesta_init::GetFields.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnsf</td><td>Full grid fourier quantity for s component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnuf</td><td>Full grid fourier quantity for u component. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnvf</td><td>Full grid fourier quantity for v component. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Control flags. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa8f338cb8baf6e5037a88ab897404521"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa8f338cb8baf6e5037a88ab897404521">&#9670;&nbsp;</a></span>set_bndy_half_to_full()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine utilities::set_bndy_half_to_full </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>amnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>f</em>&#160;</td>
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-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set fouier boundary conditions for full grid quantity converted from half grid. </p>
-<p>At the center of the grid, the quantity should not be a function of u so all m &gt; 0 modes should be zero. For the m = 0 terms, use the value from the half grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">amnh</td><td>Half grid fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnf</td><td>Full grid fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Control flags. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad6e45cf4046669d9fabd21ebd8d16f1b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad6e45cf4046669d9fabd21ebd8d16f1b">&#9670;&nbsp;</a></span>set_bndy_half_to_full_ds()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">pure subroutine utilities::set_bndy_half_to_full_ds </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>amnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout)&#160;</td>
-          <td class="paramname"><em>amnf_ds</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmin</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">&#160;</td>
-          <td class="paramname"><em>par</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set fouier boundary conditions for full grid radial derivative quantity converted from half grid. </p>
-<p>At the center of the grid the the m=1 quanity flips size across the s=0 point. The results in a doubling of the m=1 component for the first half grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">amnh</td><td>Half grid fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">amnf_ds</td><td>Full grid radial derivative fourier quantity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Control flags. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3595a7fa86d5b7714483cc9cb05ff00f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3595a7fa86d5b7714483cc9cb05ff00f">&#9670;&nbsp;</a></span>test_div()</h2>
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-<div class="memitem">
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-          <td class="memname">logical function utilities::test_div </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupsmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupumnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>jbsupvmnh</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>parity</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nsmin</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Test divergence of a half grid quantity. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupsmnh</td><td>Contravariant vector in the s direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupumnh</td><td>Contravariant vector in the u direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">jbsupvmnh</td><td>Contravariant vector in the v direction half grid. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parity</td><td>Parity flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmin</td><td>Minimum radial index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nsmax</td><td>Maximum radial index. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a365a15cb83921febb9278a6a9b158079"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a365a15cb83921febb9278a6a9b158079">&#9670;&nbsp;</a></span>test_utilities()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function utilities::test_utilities</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Test utility routines. </p>
-<p>Test the various operations of in the <a class="el" href="namespaceutilities.html">utilities</a> module. Current tests check:</p>
-<ul>
-<li>Check the div(curl(A)) is identially zero. </li>
-</ul>
-
-</div>
-</div>
-<a id="a001873e5aa19fce5d04482dde1e081bd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a001873e5aa19fce5d04482dde1e081bd">&#9670;&nbsp;</a></span>to_full_mesh2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::to_full_mesh2 </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Migrate a two dimensional quantity form the half mesh to the full mesh. </p>
-<p>First and last point are extrapolated linearly. The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vech</td><td>Half mesh qantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vecf</td><td>Full mesh quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa39bbeefd09bd82b946d1ac38e7856ae"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa39bbeefd09bd82b946d1ac38e7856ae">&#9670;&nbsp;</a></span>to_full_mesh3()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::to_full_mesh3 </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Migrate a three dimensional quantity form the half mesh to the full mesh. </p>
-<p>First and last point are extrapolated linearly. The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vech</td><td>Half mesh qantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vecf</td><td>Full mesh quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa56fb8ab863c6128f936e34a3028c8f0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa56fb8ab863c6128f936e34a3028c8f0">&#9670;&nbsp;</a></span>to_half_mesh()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine <a class="el" href="interfaceutilities_1_1to__half__mesh.html">utilities::to_half_mesh</a> </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(in), allocatable&#160;</td>
-          <td class="paramname"><em>vecf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Migrates a full mesh quantity to the half mesh. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vech</td><td>Half grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a396f6885db6a18350a572b6df1b58195"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a396f6885db6a18350a572b6df1b58195">&#9670;&nbsp;</a></span>to_half_mesh_p()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine utilities::to_half_mesh_p </td>
-          <td>(</td>
-          <td class="paramtype">real (dp), dimension(:,:,:), pointer&#160;</td>
-          <td class="paramname"><em>vecf</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (dp), dimension(:,:,:), intent(inout), allocatable&#160;</td>
-          <td class="paramname"><em>vech</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Migrates a full mesh quantity to the half mesh. </p>
-<p>The arrays must be passed in as ALLOCATABLE to preserve the array bounds. Full vector grid is passed in as pointer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vecf</td><td>Full grid quantity. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">vech</td><td>Half grid quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<a href="#nested-classes">Data Types</a> &#124;
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-<div class="title">v3fit_context Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Defines a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object to contain all the memory for running v3fit. Contains methods to write memory to disk.  
-<a href="namespacev3fit__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a v3fit context. This contains all memory needed to operate v3fit.  <a href="structv3fit__context_1_1v3fit__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a9bea5a9761b8eef9a1fc4a47c5773734"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a9bea5a9761b8eef9a1fc4a47c5773734">v3fit_context_construct</a> (cl_parser)</td></tr>
-<tr class="memdesc:a9bea5a9761b8eef9a1fc4a47c5773734"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object.  <a href="namespacev3fit__context.html#a9bea5a9761b8eef9a1fc4a47c5773734">More...</a><br /></td></tr>
-<tr class="separator:a9bea5a9761b8eef9a1fc4a47c5773734"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9ce744ab2320ad352b6b8e277f652101"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a9ce744ab2320ad352b6b8e277f652101">v3fit_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:a9ce744ab2320ad352b6b8e277f652101"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object.  <a href="namespacev3fit__context.html#a9ce744ab2320ad352b6b8e277f652101">More...</a><br /></td></tr>
-<tr class="separator:a9ce744ab2320ad352b6b8e277f652101"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8b121cf215ff7e2539a8c8e250914185"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a8b121cf215ff7e2539a8c8e250914185">v3fit_context_resize</a> (this)</td></tr>
-<tr class="memdesc:a8b121cf215ff7e2539a8c8e250914185"><td class="mdescLeft">&#160;</td><td class="mdescRight">Resize the arrays.  <a href="namespacev3fit__context.html#a8b121cf215ff7e2539a8c8e250914185">More...</a><br /></td></tr>
-<tr class="separator:a8b121cf215ff7e2539a8c8e250914185"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a23986d61a8e51cb493c2a3c8b926a439"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a23986d61a8e51cb493c2a3c8b926a439">v3fit_context_create_files</a> (this)</td></tr>
-<tr class="memdesc:a23986d61a8e51cb493c2a3c8b926a439"><td class="mdescLeft">&#160;</td><td class="mdescRight">Create output files.  <a href="namespacev3fit__context.html#a23986d61a8e51cb493c2a3c8b926a439">More...</a><br /></td></tr>
-<tr class="separator:a23986d61a8e51cb493c2a3c8b926a439"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0762818fd861b60d914eed8e9c2b5346"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a0762818fd861b60d914eed8e9c2b5346">v3fit_context_close_files</a> (this)</td></tr>
-<tr class="memdesc:a0762818fd861b60d914eed8e9c2b5346"><td class="mdescLeft">&#160;</td><td class="mdescRight">Close output files.  <a href="namespacev3fit__context.html#a0762818fd861b60d914eed8e9c2b5346">More...</a><br /></td></tr>
-<tr class="separator:a0762818fd861b60d914eed8e9c2b5346"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7c80eb112aab74644068ae04d407457d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a7c80eb112aab74644068ae04d407457d">v3fit_context_write</a> (this)</td></tr>
-<tr class="memdesc:a7c80eb112aab74644068ae04d407457d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> out to disk.  <a href="namespacev3fit__context.html#a7c80eb112aab74644068ae04d407457d">More...</a><br /></td></tr>
-<tr class="separator:a7c80eb112aab74644068ae04d407457d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a18a7ea156e72da552e4bc6e6a2ca67"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a1a18a7ea156e72da552e4bc6e6a2ca67">v3fit_context_write_param_header</a> (this, params, prefix, type_name)</td></tr>
-<tr class="memdesc:a1a18a7ea156e72da552e4bc6e6a2ca67"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the <a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">param_class::correlation</a> header out to disk.  <a href="namespacev3fit__context.html#a1a18a7ea156e72da552e4bc6e6a2ca67">More...</a><br /></td></tr>
-<tr class="separator:a1a18a7ea156e72da552e4bc6e6a2ca67"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a397be0527ba6e7d56eacdfd2b9a04b4c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#a397be0527ba6e7d56eacdfd2b9a04b4c">v3fit_context_init_data</a> (this, eq_steps)</td></tr>
-<tr class="memdesc:a397be0527ba6e7d56eacdfd2b9a04b4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize the dimensions and variables of the result file.  <a href="namespacev3fit__context.html#a397be0527ba6e7d56eacdfd2b9a04b4c">More...</a><br /></td></tr>
-<tr class="separator:a397be0527ba6e7d56eacdfd2b9a04b4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae603bd5c6255bc5ac0c713645184a2ba"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#ae603bd5c6255bc5ac0c713645184a2ba">v3fit_context_write_step_data</a> (this, first_step, eq_steps)</td></tr>
-<tr class="memdesc:ae603bd5c6255bc5ac0c713645184a2ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to the defined variables.  <a href="namespacev3fit__context.html#ae603bd5c6255bc5ac0c713645184a2ba">More...</a><br /></td></tr>
-<tr class="separator:ae603bd5c6255bc5ac0c713645184a2ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc956ea722061536cdc2ecd478308f4d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#afc956ea722061536cdc2ecd478308f4d">v3fit_context_restart</a> (this, current_step)</td></tr>
-<tr class="memdesc:afc956ea722061536cdc2ecd478308f4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart the reconstruction.  <a href="namespacev3fit__context.html#afc956ea722061536cdc2ecd478308f4d">More...</a><br /></td></tr>
-<tr class="separator:afc956ea722061536cdc2ecd478308f4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object to contain all the memory for running v3fit. Contains methods to write memory to disk. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a0762818fd861b60d914eed8e9c2b5346"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0762818fd861b60d914eed8e9c2b5346">&#9670;&nbsp;</a></span>v3fit_context_close_files()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_close_files </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Close output files. </p>
-<p>Closes output files that reconstructed results are written to.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9bea5a9761b8eef9a1fc4a47c5773734"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9bea5a9761b8eef9a1fc4a47c5773734">&#9670;&nbsp;</a></span>v3fit_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>) function, pointer v3fit_context::v3fit_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">type (commandline_parser_class), pointer&#160;</td>
-          <td class="paramname"><em>cl_parser</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object with an instance of a <a class="el" href="classcommandline__parser.html">commandline_parser</a> object. This opens files for the recout, runlog, and result files. Over allocates space for the number of signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">cl_parser</td><td>An instance of a commandline parser object. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a23986d61a8e51cb493c2a3c8b926a439"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a23986d61a8e51cb493c2a3c8b926a439">&#9670;&nbsp;</a></span>v3fit_context_create_files()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_create_files </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Create output files. </p>
-<p>Creates output files that reconstructed results are written to.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9ce744ab2320ad352b6b8e277f652101"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9ce744ab2320ad352b6b8e277f652101">&#9670;&nbsp;</a></span>v3fit_context_destruct()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> object. This all the v3fit constructed objects are destroyed here.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a397be0527ba6e7d56eacdfd2b9a04b4c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a397be0527ba6e7d56eacdfd2b9a04b4c">&#9670;&nbsp;</a></span>v3fit_context_init_data()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_init_data </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize the dimensions and variables of the result file. </p>
-<p>Defines dimensions, variables and writes out the initial step of v3fit to result netcdf file. Multi dimensional arrays need to be transposed so arrays appear in the correct order in non fortran languages.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_steps</td><td>Number of steps taken by the equilibrium. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8b121cf215ff7e2539a8c8e250914185"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8b121cf215ff7e2539a8c8e250914185">&#9670;&nbsp;</a></span>v3fit_context_resize()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_resize </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Resize the arrays. </p>
-<p>Resizes the signal arrays to contain only the minimun necessary to hold all signals. If no signals were constructed, the signal array is not allocated.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="afc956ea722061536cdc2ecd478308f4d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc956ea722061536cdc2ecd478308f4d">&#9670;&nbsp;</a></span>v3fit_context_restart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function v3fit_context::v3fit_context_restart </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Restart the reconstruction. </p>
-<p>Reloads a reconstruction from the result file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">current_step</td><td>Reconstruction step left off from. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The current step. </dd></dl>
-
-</div>
-</div>
-<a id="a7c80eb112aab74644068ae04d407457d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7c80eb112aab74644068ae04d407457d">&#9670;&nbsp;</a></span>v3fit_context_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_write </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> out to disk. </p>
-<p>Writes out the results of v3fit to the recout file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>The 'this' parameter is intent(inout) because <a class="el" href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">signal::signal_write</a> calls <a class="el" href="namespacesignal.html#af8b5017e0bb197117d7bdcba69603d3f">signal::signal_get_g2</a> which needs to be intent(inout). </dd></dl>
-
-</div>
-</div>
-<a id="a1a18a7ea156e72da552e4bc6e6a2ca67"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1a18a7ea156e72da552e4bc6e6a2ca67">&#9670;&nbsp;</a></span>v3fit_context_write_param_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_write_param_header </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a>), dimension(:)&#160;</td>
-          <td class="paramname"><em>params</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*)&#160;</td>
-          <td class="paramname"><em>prefix</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*)&#160;</td>
-          <td class="paramname"><em>type_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the <a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">param_class::correlation</a> header out to disk. </p>
-<p>Writes out the results of header for a correlation matric. This header is formatted by a an inital col left blank followed by eack parameter name spaced 14 spaced apart from each other.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">params</td><td>Array of parameter objects. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">prefix</td><td>Prefix string to format the header. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">type_name</td><td>Type name of the parameters. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>The 'this' parameter is intent(inout) because <a class="el" href="namespacesignal.html#adb6802976320da62c5ccf30d7e0578f4">signal::signal_write</a> calls <a class="el" href="namespacesignal.html#af8b5017e0bb197117d7bdcba69603d3f">signal::signal_get_g2</a> which needs to be intent(inout). @node The 'prefix' parameter must be an exact length string with all white space predefined. </dd></dl>
-
-</div>
-</div>
-<a id="ae603bd5c6255bc5ac0c713645184a2ba"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae603bd5c6255bc5ac0c713645184a2ba">&#9670;&nbsp;</a></span>v3fit_context_write_step_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_context::v3fit_context_write_step_data </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
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-        <tr>
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-          <td></td>
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-          <td class="paramname"><em>first_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_steps</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write step data to the defined variables. </p>
-<p>Writes out the data for a reconstruction step to the result file. If this is being called for the first time. Do not read the number of steps.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">first_step</td><td>Flags to determine if this is the first instance this has been called. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_steps</td><td>Number of steps the equilibrium took. </td></tr>
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-  </dd>
-</dl>
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-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">v3fit_input Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This file contains all the variables and maximum sizes of the inputs for a v3fit namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3FIT task should be copied to a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. All non-parameters are inputs to the namelist input file.  
-<a href="namespacev3fit__input.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a3ee7923a0e8823098df46d2929d1b0ab"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3ee7923a0e8823098df46d2929d1b0ab">v3fit_input_read_namelist</a> (namelist_file)</td></tr>
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-<tr class="separator:a3ee7923a0e8823098df46d2929d1b0ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3ebb1c33783f13106c703abf6927e186"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3ebb1c33783f13106c703abf6927e186">v3fit_input_find_scale_index</a> (index)</td></tr>
-<tr class="memdesc:a3ebb1c33783f13106c703abf6927e186"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finds the index of the scaling spec.  <a href="namespacev3fit__input.html#a3ebb1c33783f13106c703abf6927e186">More...</a><br /></td></tr>
-<tr class="separator:a3ebb1c33783f13106c703abf6927e186"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad531a9ffbbbb3228686b5f7b8152dead"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad531a9ffbbbb3228686b5f7b8152dead">v3fit_input_find_offset_index</a> (index)</td></tr>
-<tr class="memdesc:ad531a9ffbbbb3228686b5f7b8152dead"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finds the index of the offset spec.  <a href="namespacev3fit__input.html#ad531a9ffbbbb3228686b5f7b8152dead">More...</a><br /></td></tr>
-<tr class="separator:ad531a9ffbbbb3228686b5f7b8152dead"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d975a942827c32691153410374be732"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7d975a942827c32691153410374be732">v3fit_input_write_namelist</a> (namelist_file)</td></tr>
-<tr class="memdesc:a7d975a942827c32691153410374be732"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the namelist input file.  <a href="namespacev3fit__input.html#a7d975a942827c32691153410374be732">More...</a><br /></td></tr>
-<tr class="separator:a7d975a942827c32691153410374be732"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-<tr class="memitem:af4f1c90eacff29637a6703202a320052"><td class="memItemLeft" align="right" valign="top"><a id="af4f1c90eacff29637a6703202a320052"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af4f1c90eacff29637a6703202a320052">v3fit_max_diagnostics</a> = 1000</td></tr>
-<tr class="memdesc:af4f1c90eacff29637a6703202a320052"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of diagnostic signals. <br /></td></tr>
-<tr class="separator:af4f1c90eacff29637a6703202a320052"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c2d03eae11f109e405063629ea8fb47"><td class="memItemLeft" align="right" valign="top"><a id="a1c2d03eae11f109e405063629ea8fb47"></a>
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-<tr class="memdesc:a1c2d03eae11f109e405063629ea8fb47"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of geometric signals. <br /></td></tr>
-<tr class="separator:a1c2d03eae11f109e405063629ea8fb47"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3a2686ac4e6aae0fb419007f710ea554"><td class="memItemLeft" align="right" valign="top"><a id="a3a2686ac4e6aae0fb419007f710ea554"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_max_priors</a> = 1000</td></tr>
-<tr class="memdesc:a3a2686ac4e6aae0fb419007f710ea554"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of prior signals. <br /></td></tr>
-<tr class="separator:a3a2686ac4e6aae0fb419007f710ea554"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03926d8eb38a8af365ca1072a5d2754e"><td class="memItemLeft" align="right" valign="top"><a id="a03926d8eb38a8af365ca1072a5d2754e"></a>
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-<tr class="memdesc:aa0418bf28cc1056ea0d95949d89fec71"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of total signals. <br /></td></tr>
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-<tr class="memitem:a17cb61871ebe20fe6f97bb2410aa179c"><td class="memItemLeft" align="right" valign="top"><a id="a17cb61871ebe20fe6f97bb2410aa179c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a> = 100</td></tr>
-<tr class="memdesc:a17cb61871ebe20fe6f97bb2410aa179c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:aac2c714ea366acf1f172fd2d67c46bfd"><td class="memItemLeft" align="right" valign="top">integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a> = 150</td></tr>
-<tr class="memdesc:aac2c714ea366acf1f172fd2d67c46bfd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum size of the easy specification arrays.  <a href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">More...</a><br /></td></tr>
-<tr class="separator:aac2c714ea366acf1f172fd2d67c46bfd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b72d4dae21dc072345e87ca66282992"><td class="memItemLeft" align="right" valign="top"><a id="a5b72d4dae21dc072345e87ca66282992"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5b72d4dae21dc072345e87ca66282992">v3fit_max_lif_size</a> = 100</td></tr>
-<tr class="memdesc:a5b72d4dae21dc072345e87ca66282992"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of phi positions for limiters. <br /></td></tr>
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-<tr class="memdesc:ac4eb570001e79b214e4edcb24d5e971e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of signals a combination signal can refer to. <br /></td></tr>
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-<tr class="memdesc:a888aa95a3a2a2bd133199010bdbdc862"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reconstruction step name length. <br /></td></tr>
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-<tr class="memdesc:ad1c31938a79add9637c1d186dfccd1ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for main namelist input. <a class="el" href="namelist_sec.html">Namelist v3fit_main_nli definition</a>. <br /></td></tr>
-<tr class="separator:ad1c31938a79add9637c1d186dfccd1ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aaeec2a0fe790641ebac2a03c7abd7a4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for VMEC namelist input. <br /></td></tr>
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-<tr class="memdesc:afb389a447b59890dce1eddceb64cce01"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for a siesta namelist input. <br /></td></tr>
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-<tr class="memitem:a2d40e6ec26c58cffa367843b0491d5aa"><td class="memItemLeft" align="right" valign="top"><a id="a2d40e6ec26c58cffa367843b0491d5aa"></a>
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-<tr class="memdesc:a2d40e6ec26c58cffa367843b0491d5aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for a siesta restart file. <br /></td></tr>
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-<tr class="memdesc:a996b17010c59ba9bcccf546b259fbcc9"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for list of MDSIG files. <br /></td></tr>
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-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae1fe6c8994f39bfe0b7a5b2a576fccdb">ipch_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:ae1fe6c8994f39bfe0b7a5b2a576fccdb"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding interferometry-polarimetry information. <a class="el" href="intpol_dot_sec.html">Inteferometry/Polarimetry Diagnostic Dot File</a>. <br /></td></tr>
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-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a44c3bf45a946bb5583996a47eab2e1c7">thscte_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:a44c3bf45a946bb5583996a47eab2e1c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding Thomson Scattering information. <br /></td></tr>
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-<tr class="memitem:a21c831b5d3eb6144de874851c67e9f93"><td class="memItemLeft" align="right" valign="top"><a id="a21c831b5d3eb6144de874851c67e9f93"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a21c831b5d3eb6144de874851c67e9f93">mse_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:a21c831b5d3eb6144de874851c67e9f93"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding motional stark effect information. <br /></td></tr>
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-<tr class="memitem:af786af93e310aa065e95b891ae9cb5ab"><td class="memItemLeft" align="right" valign="top"><a id="af786af93e310aa065e95b891ae9cb5ab"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af786af93e310aa065e95b891ae9cb5ab">ece_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:af786af93e310aa065e95b891ae9cb5ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding ECE information. <br /></td></tr>
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-<tr class="memitem:ab1c443867144c97b12aaafbee516fad4"><td class="memItemLeft" align="right" valign="top"><a id="ab1c443867144c97b12aaafbee516fad4"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">sxrem_ratio_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:ab1c443867144c97b12aaafbee516fad4"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding soft x-ray ratio information. <br /></td></tr>
-<tr class="separator:ab1c443867144c97b12aaafbee516fad4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec2b0fa4f3dd7e442368fcd37fc50ed9"><td class="memItemLeft" align="right" valign="top"><a id="aec2b0fa4f3dd7e442368fcd37fc50ed9"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aec2b0fa4f3dd7e442368fcd37fc50ed9">limiter_grid_file</a> = ''</td></tr>
-<tr class="memdesc:aec2b0fa4f3dd7e442368fcd37fc50ed9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Limiter grid netcdf file. <br /></td></tr>
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-<tr class="memitem:a9f1c5fc5b7869f26ebb650afbb55d73b"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9f1c5fc5b7869f26ebb650afbb55d73b">na_s_desc</a> = <a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a></td></tr>
-<tr class="memdesc:a9f1c5fc5b7869f26ebb650afbb55d73b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of signals to create.  <a href="namespacev3fit__input.html#a9f1c5fc5b7869f26ebb650afbb55d73b">More...</a><br /></td></tr>
-<tr class="separator:a9f1c5fc5b7869f26ebb650afbb55d73b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">my_task</a> = ''</td></tr>
-<tr class="memdesc:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">The v3fit task. Possible values are.  <a href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">More...</a><br /></td></tr>
-<tr class="separator:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acf084faed4cf0c1352fcb0ded4a9d525"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">pp_ne_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:acf084faed4cf0c1352fcb0ded4a9d525"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model electron density profile, parameterized profile type.  <a href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">More...</a><br /></td></tr>
-<tr class="separator:acf084faed4cf0c1352fcb0ded4a9d525"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">pp_ne_b</a> = 0.0</td></tr>
-<tr class="memdesc:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the electron density profile.  <a href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">More...</a><br /></td></tr>
-<tr class="separator:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a391bee37cf57c463c16e5237121f2950"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">pp_ne_as</a> = 0.0</td></tr>
-<tr class="memdesc:a391bee37cf57c463c16e5237121f2950"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients electron density splines.  <a href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">More...</a><br /></td></tr>
-<tr class="separator:a391bee37cf57c463c16e5237121f2950"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">pp_ne_af</a> = 0.0</td></tr>
-<tr class="memdesc:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients electron density splines.  <a href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">More...</a><br /></td></tr>
-<tr class="separator:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afbb75117e851be78b8e4360e7383c199"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afbb75117e851be78b8e4360e7383c199">pp_sxrem_ptype</a> = 'none'</td></tr>
-<tr class="separator:afbb75117e851be78b8e4360e7383c199"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9cc45d9107490ae0070289782b75730c"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9cc45d9107490ae0070289782b75730c">pp_sxrem_b</a> = 0.0</td></tr>
-<tr class="separator:a9cc45d9107490ae0070289782b75730c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad7a27d4aa3c3a65027b34183f95533a4"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad7a27d4aa3c3a65027b34183f95533a4">pp_sxrem_as</a> = 0.0</td></tr>
-<tr class="separator:ad7a27d4aa3c3a65027b34183f95533a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85e26804e0bad2a97fe7582c1db8768c"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a85e26804e0bad2a97fe7582c1db8768c">pp_sxrem_af</a> = 0.0</td></tr>
-<tr class="separator:a85e26804e0bad2a97fe7582c1db8768c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e2e535fc263699fec1e12f28860a658"><td class="memItemLeft" align="right" valign="top"><a id="a2e2e535fc263699fec1e12f28860a658"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2e2e535fc263699fec1e12f28860a658">num_sxrem_p</a> = 1</td></tr>
-<tr class="memdesc:a2e2e535fc263699fec1e12f28860a658"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of sxrem profiles. <br /></td></tr>
-<tr class="separator:a2e2e535fc263699fec1e12f28860a658"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac44e39737eeaa08518fcc237d4db83ff"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len), dimension(max_sxrem_profiles)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac44e39737eeaa08518fcc237d4db83ff">pp_sxrem_ptype_a</a> = 'none'</td></tr>
-<tr class="memdesc:ac44e39737eeaa08518fcc237d4db83ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model soft x-ray emissvity profile, parameterized profile type.  <a href="namespacev3fit__input.html#ac44e39737eeaa08518fcc237d4db83ff">More...</a><br /></td></tr>
-<tr class="separator:ac44e39737eeaa08518fcc237d4db83ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abc461ed4a3957e1e4f450c5f61011b9d"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">pp_sxrem_b_a</a> = 0.0</td></tr>
-<tr class="memdesc:abc461ed4a3957e1e4f450c5f61011b9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the soft x-ray emissvity profile.  <a href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">More...</a><br /></td></tr>
-<tr class="separator:abc461ed4a3957e1e4f450c5f61011b9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a499f4203b76175c919f656827e84b050"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">pp_sxrem_as_a</a> = 0.0</td></tr>
-<tr class="memdesc:a499f4203b76175c919f656827e84b050"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients soft x-ray emissvity profile splines.  <a href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">More...</a><br /></td></tr>
-<tr class="separator:a499f4203b76175c919f656827e84b050"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af9d99df5480b5043e77b21a9d6099da8"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">pp_sxrem_af_a</a> = 0.0</td></tr>
-<tr class="memdesc:af9d99df5480b5043e77b21a9d6099da8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients soft x-ray emissvity profile splines.  <a href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">More...</a><br /></td></tr>
-<tr class="separator:af9d99df5480b5043e77b21a9d6099da8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7d17618683967adb0bd8a5bdf9ff806"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">pp_te_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:aa7d17618683967adb0bd8a5bdf9ff806"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model electron temperature profile, parameterized profile type.  <a href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">More...</a><br /></td></tr>
-<tr class="separator:aa7d17618683967adb0bd8a5bdf9ff806"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">pp_te_b</a> = 0.0</td></tr>
-<tr class="memdesc:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the electron temperature profile.  <a href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">More...</a><br /></td></tr>
-<tr class="separator:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2adbf6ccd19859db9a684016c86e2a9a"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">pp_te_as</a> = 0.0</td></tr>
-<tr class="memdesc:a2adbf6ccd19859db9a684016c86e2a9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients electron temperature splines.  <a href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">More...</a><br /></td></tr>
-<tr class="separator:a2adbf6ccd19859db9a684016c86e2a9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d3fc1eae19a61d96469c773e1f5c239"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">pp_te_af</a> = 0.0</td></tr>
-<tr class="memdesc:a5d3fc1eae19a61d96469c773e1f5c239"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients electron temperature splines.  <a href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">More...</a><br /></td></tr>
-<tr class="separator:a5d3fc1eae19a61d96469c773e1f5c239"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16d4351a6404cbf48ef877e5345b13a4"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">pp_ti_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:a16d4351a6404cbf48ef877e5345b13a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model ion temperature profile, parameterized profile type.  <a href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">More...</a><br /></td></tr>
-<tr class="separator:a16d4351a6404cbf48ef877e5345b13a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26817309fd12dda7fc109e13e1e7b6c3"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">pp_ti_b</a> = 0.0</td></tr>
-<tr class="memdesc:a26817309fd12dda7fc109e13e1e7b6c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the ion temperature profile.  <a href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">More...</a><br /></td></tr>
-<tr class="separator:a26817309fd12dda7fc109e13e1e7b6c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab25ad199efab607402f3efa28b05c259"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">pp_ti_as</a> = 0.0</td></tr>
-<tr class="memdesc:ab25ad199efab607402f3efa28b05c259"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients ion temperature splines.  <a href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">More...</a><br /></td></tr>
-<tr class="separator:ab25ad199efab607402f3efa28b05c259"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">pp_ti_af</a> = 0.0</td></tr>
-<tr class="memdesc:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients ion temperature splines.  <a href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">More...</a><br /></td></tr>
-<tr class="separator:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae012a2d7050755e3fa8f0b4075fa722f"><td class="memItemLeft" align="right" valign="top"><a id="ae012a2d7050755e3fa8f0b4075fa722f"></a>
-real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae012a2d7050755e3fa8f0b4075fa722f">sxrem_te_a</a> = 0.0</td></tr>
-<tr class="memdesc:ae012a2d7050755e3fa8f0b4075fa722f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of temperature points for the sxrem ratio function. <br /></td></tr>
-<tr class="separator:ae012a2d7050755e3fa8f0b4075fa722f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1aea7c110a801736a6c3125a5aac348d"><td class="memItemLeft" align="right" valign="top"><a id="a1aea7c110a801736a6c3125a5aac348d"></a>
-real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1aea7c110a801736a6c3125a5aac348d">sxrem_ratio_a</a> = 0.0</td></tr>
-<tr class="memdesc:a1aea7c110a801736a6c3125a5aac348d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of ratio points for the sxrem ratio function. <br /></td></tr>
-<tr class="separator:a1aea7c110a801736a6c3125a5aac348d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="memItemLeft" align="right" valign="top"><a id="a4f1b83d2c8ed6f395bc810bc09660b71"></a>
-character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4f1b83d2c8ed6f395bc810bc09660b71">model_eq_type</a> = 'vmec'</td></tr>
-<tr class="memdesc:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify wich equilibrium to use. <br /></td></tr>
-<tr class="separator:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af745a2d519ffade882e38c64e7b136da"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">model_ne_type</a> = 'pp_ne'</td></tr>
-<tr class="memdesc:af745a2d519ffade882e38c64e7b136da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron density is computed by the model.  <a href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">More...</a><br /></td></tr>
-<tr class="separator:af745a2d519ffade882e38c64e7b136da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a31674b0ebbae407f94a99371be9b0636"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a31674b0ebbae407f94a99371be9b0636">model_sxrem_type</a> = 'none'</td></tr>
-<tr class="separator:a31674b0ebbae407f94a99371be9b0636"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa630ce3b00c409dfb57c00141d1aaa8"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length), dimension(max_sxrem_profiles)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afa630ce3b00c409dfb57c00141d1aaa8">model_sxrem_type_a</a> = 'none'</td></tr>
-<tr class="memdesc:afa630ce3b00c409dfb57c00141d1aaa8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how soft x-ray emissivity is computed by the model.  <a href="namespacev3fit__input.html#afa630ce3b00c409dfb57c00141d1aaa8">More...</a><br /></td></tr>
-<tr class="separator:afa630ce3b00c409dfb57c00141d1aaa8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03a390c32ec9004a1eec1e1022e8b363"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a03a390c32ec9004a1eec1e1022e8b363">model_te_type</a> = 'none'</td></tr>
-<tr class="memdesc:a03a390c32ec9004a1eec1e1022e8b363"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron temperature is computed by the model.  <a href="namespacev3fit__input.html#a03a390c32ec9004a1eec1e1022e8b363">More...</a><br /></td></tr>
-<tr class="separator:a03a390c32ec9004a1eec1e1022e8b363"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad8e4c794da51a61f1ee96e1d61ea15c4">model_ti_type</a> = 'none'</td></tr>
-<tr class="memdesc:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron temperature is computed by the model.  <a href="namespacev3fit__input.html#ad8e4c794da51a61f1ee96e1d61ea15c4">More...</a><br /></td></tr>
-<tr class="separator:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae356013fdf423e4188fbf9e1cddf3599"><td class="memItemLeft" align="right" valign="top"><a id="ae356013fdf423e4188fbf9e1cddf3599"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae356013fdf423e4188fbf9e1cddf3599">ne_pp_unit</a> = 1.0E18</td></tr>
-<tr class="memdesc:ae356013fdf423e4188fbf9e1cddf3599"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normalization factor for the electron density. <br /></td></tr>
-<tr class="separator:ae356013fdf423e4188fbf9e1cddf3599"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa94f9318f90453e9dc5e661f69439b68"><td class="memItemLeft" align="right" valign="top"><a id="aa94f9318f90453e9dc5e661f69439b68"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa94f9318f90453e9dc5e661f69439b68">ne_min</a> = 0.0</td></tr>
-<tr class="memdesc:aa94f9318f90453e9dc5e661f69439b68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum electron density. <br /></td></tr>
-<tr class="separator:aa94f9318f90453e9dc5e661f69439b68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a084d31503aaa6c68d046a1d41a9eaf63"><td class="memItemLeft" align="right" valign="top"><a id="a084d31503aaa6c68d046a1d41a9eaf63"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a084d31503aaa6c68d046a1d41a9eaf63">te_min</a> = 0.0</td></tr>
-<tr class="memdesc:a084d31503aaa6c68d046a1d41a9eaf63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum electron temperature. <br /></td></tr>
-<tr class="separator:a084d31503aaa6c68d046a1d41a9eaf63"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0367dfcbb23024e3e527e86df2ca6b68"><td class="memItemLeft" align="right" valign="top"><a id="a0367dfcbb23024e3e527e86df2ca6b68"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0367dfcbb23024e3e527e86df2ca6b68">ti_min</a> = 0.0</td></tr>
-<tr class="memdesc:a0367dfcbb23024e3e527e86df2ca6b68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum ion temperature. <br /></td></tr>
-<tr class="separator:a0367dfcbb23024e3e527e86df2ca6b68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0fb1e3a467bb70bfcb7098781678eba"><td class="memItemLeft" align="right" valign="top"><a id="ac0fb1e3a467bb70bfcb7098781678eba"></a>
-real(rprec), dimension(max_sxrem_profiles)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac0fb1e3a467bb70bfcb7098781678eba">sxrem_min</a> = 0.0</td></tr>
-<tr class="memdesc:ac0fb1e3a467bb70bfcb7098781678eba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum soft x-ray emission. <br /></td></tr>
-<tr class="separator:ac0fb1e3a467bb70bfcb7098781678eba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="memItemLeft" align="right" valign="top"><a id="a5ed8f65dd06c73918ebfa04ede7b5fb1"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ed8f65dd06c73918ebfa04ede7b5fb1">e_pressure_fraction</a> = 0.5</td></tr>
-<tr class="memdesc:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the fraction of the pressure constributed by the electrons. <br /></td></tr>
-<tr class="separator:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="memItemLeft" align="right" valign="top"><a id="a9b6bbdb8aafa7343b19b4ddba3c02512"></a>
-character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9b6bbdb8aafa7343b19b4ddba3c02512">emission_file</a> = ''</td></tr>
-<tr class="memdesc:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the path to the file contain the soft x-ray emission function. <br /></td></tr>
-<tr class="separator:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ea57408967601f98371a8a2f9985895"><td class="memItemLeft" align="right" valign="top"><a id="a5ea57408967601f98371a8a2f9985895"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ea57408967601f98371a8a2f9985895">ece_resonance_range</a> = 0.0</td></tr>
-<tr class="memdesc:a5ea57408967601f98371a8a2f9985895"><td class="mdescLeft">&#160;</td><td class="mdescRight">ECE resonance search range. <br /></td></tr>
-<tr class="separator:a5ea57408967601f98371a8a2f9985895"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="memItemLeft" align="right" valign="top"><a id="a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4fa5b11ba2b5ef8f1b1d967b35fbaa8a">coosig_wgts</a> = 0.0</td></tr>
-<tr class="memdesc:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of combination parameter signal weights. <br /></td></tr>
-<tr class="separator:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="memItemLeft" align="right" valign="top"><a id="aa1ebc0f638a20b685987f0dfe1c72c4c"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa1ebc0f638a20b685987f0dfe1c72c4c">n_rc</a> = 0</td></tr>
-<tr class="memdesc:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21db612f7dc38fd8a98cfce3b527c509"><td class="memItemLeft" align="right" valign="top"><a id="a21db612f7dc38fd8a98cfce3b527c509"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a21db612f7dc38fd8a98cfce3b527c509">rc_type</a> = ''</td></tr>
-<tr class="memdesc:a21db612f7dc38fd8a98cfce3b527c509"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a21db612f7dc38fd8a98cfce3b527c509"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="memItemLeft" align="right" valign="top"><a id="a3341ca9d709df8ae0f49946bfdc5a4e4"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3341ca9d709df8ae0f49946bfdc5a4e4">rc_index</a> = 0</td></tr>
-<tr class="memdesc:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6785668e1153612adfe5ed8676bdf289"><td class="memItemLeft" align="right" valign="top"><a id="a6785668e1153612adfe5ed8676bdf289"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6785668e1153612adfe5ed8676bdf289">rc_value</a> = 0.0</td></tr>
-<tr class="memdesc:a6785668e1153612adfe5ed8676bdf289"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a6785668e1153612adfe5ed8676bdf289"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7adc371e0b3a169e5e4beacbf6be9478"><td class="memItemLeft" align="right" valign="top"><a id="a7adc371e0b3a169e5e4beacbf6be9478"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7adc371e0b3a169e5e4beacbf6be9478">n_dp</a> = 0</td></tr>
-<tr class="memdesc:a7adc371e0b3a169e5e4beacbf6be9478"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of derived parameters. <br /></td></tr>
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-<tr class="memitem:a1fe6cc0ff64e6eb910c6f8c717677896"><td class="memItemLeft" align="right" valign="top"><a id="a1fe6cc0ff64e6eb910c6f8c717677896"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1fe6cc0ff64e6eb910c6f8c717677896">dp_type</a> = ''</td></tr>
-<tr class="memdesc:a1fe6cc0ff64e6eb910c6f8c717677896"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of derived parameters. <br /></td></tr>
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-<tr class="memitem:a5a5beb5e288bc2e2601a6d553ddfbcce"><td class="memItemLeft" align="right" valign="top"><a id="a5a5beb5e288bc2e2601a6d553ddfbcce"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5a5beb5e288bc2e2601a6d553ddfbcce">dp_index</a> = 0</td></tr>
-<tr class="memdesc:a5a5beb5e288bc2e2601a6d553ddfbcce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of derived parameters. <br /></td></tr>
-<tr class="separator:a5a5beb5e288bc2e2601a6d553ddfbcce"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6c1c93425f04f7f004593be942760314"><td class="memItemLeft" align="right" valign="top"><a id="a6c1c93425f04f7f004593be942760314"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6c1c93425f04f7f004593be942760314">n_rp</a> = 0</td></tr>
-<tr class="memdesc:a6c1c93425f04f7f004593be942760314"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:afbcb33671b5363e966f6155d12925e2a"><td class="memItemLeft" align="right" valign="top"><a id="afbcb33671b5363e966f6155d12925e2a"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afbcb33671b5363e966f6155d12925e2a">rp_type</a> = ''</td></tr>
-<tr class="memdesc:afbcb33671b5363e966f6155d12925e2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of reconstruction parameters. <br /></td></tr>
-<tr class="separator:afbcb33671b5363e966f6155d12925e2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a922dfb1a34849076bf51434ddee6befa"><td class="memItemLeft" align="right" valign="top"><a id="a922dfb1a34849076bf51434ddee6befa"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a922dfb1a34849076bf51434ddee6befa">rp_index</a> = 0</td></tr>
-<tr class="memdesc:a922dfb1a34849076bf51434ddee6befa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ith index of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:a2aebe7cefbdfff183e687deb3ad098c0"><td class="memItemLeft" align="right" valign="top"><a id="a2aebe7cefbdfff183e687deb3ad098c0"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2aebe7cefbdfff183e687deb3ad098c0">rp_index2</a> = 0</td></tr>
-<tr class="memdesc:a2aebe7cefbdfff183e687deb3ad098c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:a2b70e391fc06040c923c580b881bbd28"><td class="memItemLeft" align="right" valign="top"><a id="a2b70e391fc06040c923c580b881bbd28"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2b70e391fc06040c923c580b881bbd28">rp_vrnc</a> = 0.0</td></tr>
-<tr class="memdesc:a2b70e391fc06040c923c580b881bbd28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum reconstruction increment. <br /></td></tr>
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-<tr class="memitem:ad37a237759d4d29d0d8b029a7c3274be"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad37a237759d4d29d0d8b029a7c3274be">rp_range_type</a> = 'infinity'</td></tr>
-<tr class="memdesc:ad37a237759d4d29d0d8b029a7c3274be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range types. The first index is the lower range and second index the upper range.  <a href="namespacev3fit__input.html#ad37a237759d4d29d0d8b029a7c3274be">More...</a><br /></td></tr>
-<tr class="separator:ad37a237759d4d29d0d8b029a7c3274be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1cd8831eb51c75138324c8617f3addaf"><td class="memItemLeft" align="right" valign="top"><a id="a1cd8831eb51c75138324c8617f3addaf"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1cd8831eb51c75138324c8617f3addaf">rp_range_value</a> = 0.0</td></tr>
-<tr class="memdesc:a1cd8831eb51c75138324c8617f3addaf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range value. The first index is the lower range and second index the upper range. <br /></td></tr>
-<tr class="separator:a1cd8831eb51c75138324c8617f3addaf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a325ac78603af52466c911d346ef21b9f"><td class="memItemLeft" align="right" valign="top"><a id="a325ac78603af52466c911d346ef21b9f"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, 2, data_max_indices)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a325ac78603af52466c911d346ef21b9f">rp_range_index</a> = 0</td></tr>
-<tr class="memdesc:a325ac78603af52466c911d346ef21b9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range indices. The first index is the lower range and second index the upper range. <br /></td></tr>
-<tr class="separator:a325ac78603af52466c911d346ef21b9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae3952bf12802cac415f42af5b0019fe5"><td class="memItemLeft" align="right" valign="top"><a id="ae3952bf12802cac415f42af5b0019fe5"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae3952bf12802cac415f42af5b0019fe5">n_lp</a> = 0</td></tr>
-<tr class="memdesc:ae3952bf12802cac415f42af5b0019fe5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of locking parameters. <br /></td></tr>
-<tr class="separator:ae3952bf12802cac415f42af5b0019fe5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a573efd2e66f6513ec56822452cd0412c"><td class="memItemLeft" align="right" valign="top"><a id="a573efd2e66f6513ec56822452cd0412c"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a573efd2e66f6513ec56822452cd0412c">lp_type</a> = ''</td></tr>
-<tr class="memdesc:a573efd2e66f6513ec56822452cd0412c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of locking parameters. <br /></td></tr>
-<tr class="separator:a573efd2e66f6513ec56822452cd0412c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:addec141a80c9f49c9ab6f07c673e1348"><td class="memItemLeft" align="right" valign="top"><a id="addec141a80c9f49c9ab6f07c673e1348"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#addec141a80c9f49c9ab6f07c673e1348">lp_index</a> = 0</td></tr>
-<tr class="memdesc:addec141a80c9f49c9ab6f07c673e1348"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ith index of locking parameters. <br /></td></tr>
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-<tr class="memitem:ab9fa5501afe4180f079943391a110241"><td class="memItemLeft" align="right" valign="top"><a id="ab9fa5501afe4180f079943391a110241"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab9fa5501afe4180f079943391a110241">lp_index2</a> = 0</td></tr>
-<tr class="memdesc:ab9fa5501afe4180f079943391a110241"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of locking parameters. <br /></td></tr>
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-<tr class="memitem:a2a6b52611571eb12a99cf08bb36160a1"><td class="memItemLeft" align="right" valign="top"><a id="a2a6b52611571eb12a99cf08bb36160a1"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, <a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2a6b52611571eb12a99cf08bb36160a1">lp_sets</a> = ''</td></tr>
-<tr class="memdesc:a2a6b52611571eb12a99cf08bb36160a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of parameters to lock to. <br /></td></tr>
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-<tr class="memitem:a38c02cb03f69ba62fffd17714561bee0"><td class="memItemLeft" align="right" valign="top"><a id="a38c02cb03f69ba62fffd17714561bee0"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, <a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a38c02cb03f69ba62fffd17714561bee0">lp_sets_index</a> = 0</td></tr>
-<tr class="memdesc:a38c02cb03f69ba62fffd17714561bee0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ith index of parameters to lock to. <br /></td></tr>
-<tr class="separator:a38c02cb03f69ba62fffd17714561bee0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a01e2fa62a9ee2f8233055d811fa0a8ef"><td class="memItemLeft" align="right" valign="top"><a id="a01e2fa62a9ee2f8233055d811fa0a8ef"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, <a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a01e2fa62a9ee2f8233055d811fa0a8ef">lp_sets_index2</a> = 0</td></tr>
-<tr class="memdesc:a01e2fa62a9ee2f8233055d811fa0a8ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of parameters to lock to. <br /></td></tr>
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-<tr class="memitem:a247aa2d91b019cc2af097d86b400228e"><td class="memItemLeft" align="right" valign="top"><a id="a247aa2d91b019cc2af097d86b400228e"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>, <a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a247aa2d91b019cc2af097d86b400228e">lp_sets_coeff</a> = 0.0</td></tr>
-<tr class="memdesc:a247aa2d91b019cc2af097d86b400228e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lock parameter coefficients. <br /></td></tr>
-<tr class="separator:a247aa2d91b019cc2af097d86b400228e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0b959b12e237e9d4266f269f4b67ca86"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0b959b12e237e9d4266f269f4b67ca86">n_sdata_o</a> = 0</td></tr>
-<tr class="separator:a0b959b12e237e9d4266f269f4b67ca86"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea70aa9d8ac8fbac3e2aac8813ba649a"><td class="memItemLeft" align="right" valign="top"><a id="aea70aa9d8ac8fbac3e2aac8813ba649a"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aea70aa9d8ac8fbac3e2aac8813ba649a">iw_sdo_verbose</a> = -1</td></tr>
-<tr class="memdesc:aea70aa9d8ac8fbac3e2aac8813ba649a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:aea70aa9d8ac8fbac3e2aac8813ba649a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5eccf98434b659e7a02f3cfe51b43fed"><td class="memItemLeft" align="right" valign="top"><a id="a5eccf98434b659e7a02f3cfe51b43fed"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5eccf98434b659e7a02f3cfe51b43fed">sdo_data_a</a> = 0.0</td></tr>
-<tr class="memdesc:a5eccf98434b659e7a02f3cfe51b43fed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed signals. <br /></td></tr>
-<tr class="separator:a5eccf98434b659e7a02f3cfe51b43fed"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac4381a40c42a88f830641b747aa3f6a4"><td class="memItemLeft" align="right" valign="top"><a id="ac4381a40c42a88f830641b747aa3f6a4"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac4381a40c42a88f830641b747aa3f6a4">sdo_sigma_a</a> = 0.0</td></tr>
-<tr class="memdesc:ac4381a40c42a88f830641b747aa3f6a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed sigmas. <br /></td></tr>
-<tr class="separator:ac4381a40c42a88f830641b747aa3f6a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf7f90ceb1b3e5c528a69b9dbac48795"><td class="memItemLeft" align="right" valign="top"><a id="aaf7f90ceb1b3e5c528a69b9dbac48795"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aaf7f90ceb1b3e5c528a69b9dbac48795">sdo_weight_a</a> = 1.0</td></tr>
-<tr class="memdesc:aaf7f90ceb1b3e5c528a69b9dbac48795"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed weights. <br /></td></tr>
-<tr class="separator:aaf7f90ceb1b3e5c528a69b9dbac48795"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adf569e8c30db521a4cbea257752d0c4b"><td class="memItemLeft" align="right" valign="top"><a id="adf569e8c30db521a4cbea257752d0c4b"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#adf569e8c30db521a4cbea257752d0c4b">sdo_spec_can_overwrite</a> = .true.</td></tr>
-<tr class="memdesc:adf569e8c30db521a4cbea257752d0c4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allow the sigma spec to overwrite the sigma array. <br /></td></tr>
-<tr class="separator:adf569e8c30db521a4cbea257752d0c4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab411452479e901a79f09ae2361bebd2b"><td class="memItemLeft" align="right" valign="top"><a id="ab411452479e901a79f09ae2361bebd2b"></a>
-logical, dimension(<a class="el" href="namespacev3fit__input.html#af4f1c90eacff29637a6703202a320052">v3fit_max_diagnostics</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab411452479e901a79f09ae2361bebd2b">mag_a</a> = .true.</td></tr>
-<tr class="memdesc:ab411452479e901a79f09ae2361bebd2b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic signal flags. Controls if the induced signal is included in the total signal. <br /></td></tr>
-<tr class="separator:ab411452479e901a79f09ae2361bebd2b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a04e50a0867d3787d072dabe967abb864"><td class="memItemLeft" align="right" valign="top"><a id="a04e50a0867d3787d072dabe967abb864"></a>
-logical, dimension(<a class="el" href="namespacev3fit__input.html#af4f1c90eacff29637a6703202a320052">v3fit_max_diagnostics</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a04e50a0867d3787d072dabe967abb864">mag_3d_a</a> = .false.</td></tr>
-<tr class="memdesc:a04e50a0867d3787d072dabe967abb864"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic signal flags. Controls if the axisymmetric part of the signal is removed from the model signal. <br /></td></tr>
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-<tr class="memitem:aa1a2082e5115ba5f13f6bf31e5f2014a"><td class="memItemLeft" align="right" valign="top"><a id="aa1a2082e5115ba5f13f6bf31e5f2014a"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa1a2082e5115ba5f13f6bf31e5f2014a">mag_force_coil</a> = .false.</td></tr>
-<tr class="memdesc:aa1a2082e5115ba5f13f6bf31e5f2014a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forces the magnetic signal to compute the induced signal. <br /></td></tr>
-<tr class="separator:aa1a2082e5115ba5f13f6bf31e5f2014a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84bec11b26633f36ec725c42617cd579"><td class="memItemLeft" align="right" valign="top"><a id="a84bec11b26633f36ec725c42617cd579"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a84bec11b26633f36ec725c42617cd579">sdo_s_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a84bec11b26633f36ec725c42617cd579"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification lower index. <br /></td></tr>
-<tr class="separator:a84bec11b26633f36ec725c42617cd579"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afde913ecbabb4dbe6d11a2078f846370"><td class="memItemLeft" align="right" valign="top"><a id="afde913ecbabb4dbe6d11a2078f846370"></a>
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-<tr class="memdesc:afde913ecbabb4dbe6d11a2078f846370"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification upper index. <br /></td></tr>
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-<tr class="memitem:a640d556ef08bd4ecdd97af9788d1bfd8"><td class="memItemLeft" align="right" valign="top"><a id="a640d556ef08bd4ecdd97af9788d1bfd8"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a640d556ef08bd4ecdd97af9788d1bfd8">sdo_s_spec_floor</a> = 0.0</td></tr>
-<tr class="memdesc:a640d556ef08bd4ecdd97af9788d1bfd8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification floor. <br /></td></tr>
-<tr class="separator:a640d556ef08bd4ecdd97af9788d1bfd8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e1a5aa868d02a69a147362a819b6674"><td class="memItemLeft" align="right" valign="top"><a id="a0e1a5aa868d02a69a147362a819b6674"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0e1a5aa868d02a69a147362a819b6674">sdo_s_spec_fraction</a> = 0.0</td></tr>
-<tr class="memdesc:a0e1a5aa868d02a69a147362a819b6674"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification fraction. <br /></td></tr>
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-<tr class="memitem:a4baaac56042fab4c55405184367ce17e"><td class="memItemLeft" align="right" valign="top"><a id="a4baaac56042fab4c55405184367ce17e"></a>
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-<tr class="memdesc:a4baaac56042fab4c55405184367ce17e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification lower index. <br /></td></tr>
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-<tr class="memitem:abb1616830d26e0ab66f3b46d59f81831"><td class="memItemLeft" align="right" valign="top"><a id="abb1616830d26e0ab66f3b46d59f81831"></a>
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-<tr class="memdesc:abb1616830d26e0ab66f3b46d59f81831"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification upper index. <br /></td></tr>
-<tr class="separator:abb1616830d26e0ab66f3b46d59f81831"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2b0c487db8a1b6aa5eb18d3919aa31fc"><td class="memItemLeft" align="right" valign="top"><a id="a2b0c487db8a1b6aa5eb18d3919aa31fc"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2b0c487db8a1b6aa5eb18d3919aa31fc">sdo_w_spec_weight</a> = 0.0</td></tr>
-<tr class="memdesc:a2b0c487db8a1b6aa5eb18d3919aa31fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification weight. <br /></td></tr>
-<tr class="separator:a2b0c487db8a1b6aa5eb18d3919aa31fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa13b923b10e98758cabc2d14896a0551"><td class="memItemLeft" align="right" valign="top"><a id="aa13b923b10e98758cabc2d14896a0551"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa13b923b10e98758cabc2d14896a0551">mag_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:aa13b923b10e98758cabc2d14896a0551"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification lower index. <br /></td></tr>
-<tr class="separator:aa13b923b10e98758cabc2d14896a0551"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae304f641e15cd1885631abf6d2efe1af"><td class="memItemLeft" align="right" valign="top"><a id="ae304f641e15cd1885631abf6d2efe1af"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae304f641e15cd1885631abf6d2efe1af">mag_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:ae304f641e15cd1885631abf6d2efe1af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification upper index. <br /></td></tr>
-<tr class="separator:ae304f641e15cd1885631abf6d2efe1af"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a35eea91e2c76dcd3e49b9d20574e3157"><td class="memItemLeft" align="right" valign="top"><a id="a35eea91e2c76dcd3e49b9d20574e3157"></a>
-logical, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a35eea91e2c76dcd3e49b9d20574e3157">mag_spec_use_induced</a> = .true.</td></tr>
-<tr class="memdesc:a35eea91e2c76dcd3e49b9d20574e3157"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification toggle induced coil signal. <br /></td></tr>
-<tr class="separator:a35eea91e2c76dcd3e49b9d20574e3157"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a3cf3ce87524d4a927e44343ff6690a"><td class="memItemLeft" align="right" valign="top"><a id="a7a3cf3ce87524d4a927e44343ff6690a"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7a3cf3ce87524d4a927e44343ff6690a">pol_rad_ratio</a> = 1.0</td></tr>
-<tr class="memdesc:a7a3cf3ce87524d4a927e44343ff6690a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ratio of the number of poloidal grid points to radial grid points. <br /></td></tr>
-<tr class="separator:a7a3cf3ce87524d4a927e44343ff6690a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d7388793df867a50aae96474807c9ae"><td class="memItemLeft" align="right" valign="top"><a id="a7d7388793df867a50aae96474807c9ae"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7d7388793df867a50aae96474807c9ae">sfactor_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a7d7388793df867a50aae96474807c9ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification lower index. <br /></td></tr>
-<tr class="separator:a7d7388793df867a50aae96474807c9ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="memItemLeft" align="right" valign="top"><a id="a0c9e757dd5e7fc3203b6da6363cbd31b"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0c9e757dd5e7fc3203b6da6363cbd31b">sfactor_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification upper index. <br /></td></tr>
-<tr class="separator:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeedb001946f7995fdb6e7549e4fc1729"><td class="memItemLeft" align="right" valign="top"><a id="aeedb001946f7995fdb6e7549e4fc1729"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aeedb001946f7995fdb6e7549e4fc1729">sfactor_spec_fac</a> = 0.0</td></tr>
-<tr class="memdesc:aeedb001946f7995fdb6e7549e4fc1729"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal scale factor. <br /></td></tr>
-<tr class="separator:aeedb001946f7995fdb6e7549e4fc1729"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2899fb18ce5ae15243a0b67f9adbef94"><td class="memItemLeft" align="right" valign="top"><a id="a2899fb18ce5ae15243a0b67f9adbef94"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2899fb18ce5ae15243a0b67f9adbef94">soffset_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a2899fb18ce5ae15243a0b67f9adbef94"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification lower index. <br /></td></tr>
-<tr class="separator:a2899fb18ce5ae15243a0b67f9adbef94"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a865f82a521a5c0de1a798076bf9b5e12"><td class="memItemLeft" align="right" valign="top"><a id="a865f82a521a5c0de1a798076bf9b5e12"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a865f82a521a5c0de1a798076bf9b5e12">soffset_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:a865f82a521a5c0de1a798076bf9b5e12"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification upper index. <br /></td></tr>
-<tr class="separator:a865f82a521a5c0de1a798076bf9b5e12"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="memItemLeft" align="right" valign="top"><a id="afcd1be81ddae51729f5642e4fd2f0fa5"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_max_spec_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afcd1be81ddae51729f5642e4fd2f0fa5">soffset_spec_fac</a> = 0.0</td></tr>
-<tr class="memdesc:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal scale factor. <br /></td></tr>
-<tr class="separator:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a11987511aea794ac429ac277a0e5ea9d"><td class="memItemLeft" align="right" valign="top">real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">extcurz_s0</a> = -1.0</td></tr>
-<tr class="memdesc:a11987511aea794ac429ac277a0e5ea9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">External Z current radial position.  <a href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">More...</a><br /></td></tr>
-<tr class="separator:a11987511aea794ac429ac277a0e5ea9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a555584a3df19eb60f116d9f7a9bc4211"><td class="memItemLeft" align="right" valign="top"><a id="a555584a3df19eb60f116d9f7a9bc4211"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a555584a3df19eb60f116d9f7a9bc4211">extcurz_u0</a> = 0.0</td></tr>
-<tr class="memdesc:a555584a3df19eb60f116d9f7a9bc4211"><td class="mdescLeft">&#160;</td><td class="mdescRight">External Z current poloidal angle. <br /></td></tr>
-<tr class="separator:a555584a3df19eb60f116d9f7a9bc4211"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9059b0461b1526f0b37edd0ed8471f1b"><td class="memItemLeft" align="right" valign="top"><a id="a9059b0461b1526f0b37edd0ed8471f1b"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9059b0461b1526f0b37edd0ed8471f1b">r_major_radius</a></td></tr>
-<tr class="memdesc:a9059b0461b1526f0b37edd0ed8471f1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Geometric limiter major radius. <br /></td></tr>
-<tr class="separator:a9059b0461b1526f0b37edd0ed8471f1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a457741ccea4be3ff7dab9609a1c6040c"><td class="memItemLeft" align="right" valign="top"><a id="a457741ccea4be3ff7dab9609a1c6040c"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a457741ccea4be3ff7dab9609a1c6040c">a_minor_radius</a></td></tr>
-<tr class="memdesc:a457741ccea4be3ff7dab9609a1c6040c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Geometric limiter minor radius. <br /></td></tr>
-<tr class="separator:a457741ccea4be3ff7dab9609a1c6040c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85d99f2d1957cd777b3cc8bec31fdec8"><td class="memItemLeft" align="right" valign="top"><a id="a85d99f2d1957cd777b3cc8bec31fdec8"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a85d99f2d1957cd777b3cc8bec31fdec8">n_lif</a> = 0</td></tr>
-<tr class="memdesc:a85d99f2d1957cd777b3cc8bec31fdec8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of specified limiter iso functions. <br /></td></tr>
-<tr class="separator:a85d99f2d1957cd777b3cc8bec31fdec8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae88a1c871a7c457edc0d474995323382"><td class="memItemLeft" align="right" valign="top"><a id="ae88a1c871a7c457edc0d474995323382"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae88a1c871a7c457edc0d474995323382">n_phi_lif</a> = 0</td></tr>
-<tr class="memdesc:ae88a1c871a7c457edc0d474995323382"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of phi planes for an iso functions. <br /></td></tr>
-<tr class="separator:ae88a1c871a7c457edc0d474995323382"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3cdeac24ffe859cc7d02ce89e50cbb0b"><td class="memItemLeft" align="right" valign="top"><a id="a3cdeac24ffe859cc7d02ce89e50cbb0b"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>, 0:4, 0:4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3cdeac24ffe859cc7d02ce89e50cbb0b">lif_arz</a> = 0.0</td></tr>
-<tr class="memdesc:a3cdeac24ffe859cc7d02ce89e50cbb0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of r-z polynomial coefficients. <br /></td></tr>
-<tr class="separator:a3cdeac24ffe859cc7d02ce89e50cbb0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="memItemLeft" align="right" valign="top"><a id="a4c7b9c1bb980f6d66aa1e7114aca0a2c"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4c7b9c1bb980f6d66aa1e7114aca0a2c">lif_rc</a> = 0.0</td></tr>
-<tr class="memdesc:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of r offset values. <br /></td></tr>
-<tr class="separator:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a302b7767d09f14ef9b7432faec8f485d"><td class="memItemLeft" align="right" valign="top"><a id="a302b7767d09f14ef9b7432faec8f485d"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a302b7767d09f14ef9b7432faec8f485d">lif_zc</a> = 0.0</td></tr>
-<tr class="memdesc:a302b7767d09f14ef9b7432faec8f485d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of z offset values. <br /></td></tr>
-<tr class="separator:a302b7767d09f14ef9b7432faec8f485d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c59562442dd0357a132744ea7bfb93c"><td class="memItemLeft" align="right" valign="top"><a id="a1c59562442dd0357a132744ea7bfb93c"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1c59562442dd0357a132744ea7bfb93c">lif_sigma</a> = 0.001_dp</td></tr>
-<tr class="memdesc:a1c59562442dd0357a132744ea7bfb93c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of sigma values. <br /></td></tr>
-<tr class="separator:a1c59562442dd0357a132744ea7bfb93c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a37c539b1ed29562125f0931762de7835"><td class="memItemLeft" align="right" valign="top"><a id="a37c539b1ed29562125f0931762de7835"></a>
-real(rprec), dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>, <a class="el" href="namespacev3fit__input.html#a5b72d4dae21dc072345e87ca66282992">v3fit_max_lif_size</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a37c539b1ed29562125f0931762de7835">lif_phi_degree</a> = 0.0</td></tr>
-<tr class="memdesc:a37c539b1ed29562125f0931762de7835"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of phi values. Number of phi values need to be match <a class="el" href="namespacev3fit__input.html#ae88a1c871a7c457edc0d474995323382">n_phi_lif</a>. <br /></td></tr>
-<tr class="separator:a37c539b1ed29562125f0931762de7835"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad059df5d621362dfaec5d6a863fe7fce"><td class="memItemLeft" align="right" valign="top"><a id="ad059df5d621362dfaec5d6a863fe7fce"></a>
-logical, dimension(<a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_max_limiters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad059df5d621362dfaec5d6a863fe7fce">lif_on_edge</a> = .false.</td></tr>
-<tr class="memdesc:ad059df5d621362dfaec5d6a863fe7fce"><td class="mdescLeft">&#160;</td><td class="mdescRight">True specifies that the edge hits the limiter. False specifies that the edge is inside the limiter. <br /></td></tr>
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-<tr class="memitem:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="memItemLeft" align="right" valign="top"><a id="aa9a8acf596701ecc2bba5b32c7bc0389"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa9a8acf596701ecc2bba5b32c7bc0389">n_prior</a> = 0</td></tr>
-<tr class="memdesc:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of specified priors. <br /></td></tr>
-<tr class="separator:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a30b5db6c5eae2374369b9be3d8b189d6"><td class="memItemLeft" align="right" valign="top"><a id="a30b5db6c5eae2374369b9be3d8b189d6"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_max_priors</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a30b5db6c5eae2374369b9be3d8b189d6">prior_name</a> = ''</td></tr>
-<tr class="memdesc:a30b5db6c5eae2374369b9be3d8b189d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior names. <br /></td></tr>
-<tr class="separator:a30b5db6c5eae2374369b9be3d8b189d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a82605442d5d24ccb42c4e0b82ca8764b"><td class="memItemLeft" align="right" valign="top"><a id="a82605442d5d24ccb42c4e0b82ca8764b"></a>
-character(len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_max_priors</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a82605442d5d24ccb42c4e0b82ca8764b">prior_param_name</a> = ''</td></tr>
-<tr class="memdesc:a82605442d5d24ccb42c4e0b82ca8764b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior parameter names. <br /></td></tr>
-<tr class="separator:a82605442d5d24ccb42c4e0b82ca8764b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf059e86644d4f94716216ee191c60b2"><td class="memItemLeft" align="right" valign="top"><a id="aaf059e86644d4f94716216ee191c60b2"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_max_priors</a>, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aaf059e86644d4f94716216ee191c60b2">prior_indices</a> = 0</td></tr>
-<tr class="memdesc:aaf059e86644d4f94716216ee191c60b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior parameter indicies. <br /></td></tr>
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-<tr class="memitem:ada19786a1d2a3762727c1ec3c46c7e40"><td class="memItemLeft" align="right" valign="top"><a id="ada19786a1d2a3762727c1ec3c46c7e40"></a>
-character(len=data_short_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_max_priors</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ada19786a1d2a3762727c1ec3c46c7e40">prior_units</a> = ''</td></tr>
-<tr class="memdesc:ada19786a1d2a3762727c1ec3c46c7e40"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior Units. <br /></td></tr>
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-<tr class="memitem:a33aae0a4b63d98db40161869d222aaec"><td class="memItemLeft" align="right" valign="top"><a id="a33aae0a4b63d98db40161869d222aaec"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a33aae0a4b63d98db40161869d222aaec">n_coosig</a> = 0</td></tr>
-<tr class="memdesc:a33aae0a4b63d98db40161869d222aaec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of combination signals. <br /></td></tr>
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-<tr class="memitem:abf490c25c8051f8da13d6c686f94d321"><td class="memItemLeft" align="right" valign="top"><a id="abf490c25c8051f8da13d6c686f94d321"></a>
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-<tr class="memdesc:abf490c25c8051f8da13d6c686f94d321"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of signals in a combination signal. <br /></td></tr>
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-<tr class="memdesc:a1b45c303a4a33d3aeb9e7c10f01a72e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of the number signals to combine. Number if indices needs to match <a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">n_sig_coosig</a>. <br /></td></tr>
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-<tr class="memdesc:ad2cccf80c02ca6ba2de6d4b8e2868606"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficients of the signals to combine. Number if indices needs to match <a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">n_sig_coosig</a>. <br /></td></tr>
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-<tr class="memitem:a5f11fb1eaefb9e1baa4420405c09dff1"><td class="memItemLeft" align="right" valign="top">character(len=combination_type_length), dimension(<a class="el" href="namespacev3fit__input.html#a03926d8eb38a8af365ca1072a5d2754e">v3fit_max_combinations</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5f11fb1eaefb9e1baa4420405c09dff1">coosig_type</a> = 'sum'</td></tr>
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-<tr class="separator:a5f11fb1eaefb9e1baa4420405c09dff1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6eca729d3823689fab757e1a110b83f5"><td class="memItemLeft" align="right" valign="top"><a id="a6eca729d3823689fab757e1a110b83f5"></a>
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-<tr class="memdesc:a6eca729d3823689fab757e1a110b83f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the combination. <br /></td></tr>
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-<tr class="memitem:a059ccffdc9f208514515adb5748adc9f"><td class="memItemLeft" align="right" valign="top"><a id="a059ccffdc9f208514515adb5748adc9f"></a>
-character(len=data_short_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a03926d8eb38a8af365ca1072a5d2754e">v3fit_max_combinations</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a059ccffdc9f208514515adb5748adc9f">coosig_units</a> = ''</td></tr>
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-<tr class="memitem:a424222ecade94f218e98e9fdc5597c8a"><td class="memItemLeft" align="right" valign="top"><a id="a424222ecade94f218e98e9fdc5597c8a"></a>
-integer, dimension(<a class="el" href="namespacev3fit__input.html#a03926d8eb38a8af365ca1072a5d2754e">v3fit_max_combinations</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a424222ecade94f218e98e9fdc5597c8a">coosig_wgts_id</a> = -1</td></tr>
-<tr class="memdesc:a424222ecade94f218e98e9fdc5597c8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of parameter weight ids to use in the combination signal. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6096056621b3bfbc8be65b43df8ce4bd">n_gp</a> = 0</td></tr>
-<tr class="memdesc:a6096056621b3bfbc8be65b43df8ce4bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of gaussian process signals. <br /></td></tr>
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-integer, dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa41b29b78fa647a3a3877948477defb5">n_gp_signal</a> = 0</td></tr>
-<tr class="memdesc:aa41b29b78fa647a3a3877948477defb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of signals in a gaussian process signal. <br /></td></tr>
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-integer, dimension(max_gaussprocess, <a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#adc9e27c054bb4c604e2ca5dddfa6e136">gp_signal_indices</a> = 0</td></tr>
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-<tr class="memitem:a56bb34e313d78d0c5630a83a1dc4d53b"><td class="memItemLeft" align="right" valign="top">character(len=data_short_name_length), dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a56bb34e313d78d0c5630a83a1dc4d53b">gp_model_type</a> = 'none'</td></tr>
-<tr class="memdesc:a56bb34e313d78d0c5630a83a1dc4d53b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gaussian process model type.  <a href="namespacev3fit__input.html#a56bb34e313d78d0c5630a83a1dc4d53b">More...</a><br /></td></tr>
-<tr class="separator:a56bb34e313d78d0c5630a83a1dc4d53b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfe80817d9f2b145f130f61dd1a1969f"><td class="memItemLeft" align="right" valign="top"><a id="abfe80817d9f2b145f130f61dd1a1969f"></a>
-integer, dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abfe80817d9f2b145f130f61dd1a1969f">gp_model_index</a> = 0</td></tr>
-<tr class="memdesc:abfe80817d9f2b145f130f61dd1a1969f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gaussian process model type ID for models with multiple profiles. <br /></td></tr>
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-real(rprec), dimension(max_gaussprocess, <a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a56b11d42c6665df47371874e9c994deb">gp_param_vrnc</a> = 0.001</td></tr>
-<tr class="memdesc:a56b11d42c6665df47371874e9c994deb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Variances for the hyper parameters. <br /></td></tr>
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-<tr class="memitem:afa61fd490a6502b6ea4cca7996b87b14"><td class="memItemLeft" align="right" valign="top"><a id="afa61fd490a6502b6ea4cca7996b87b14"></a>
-real(rprec), dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afa61fd490a6502b6ea4cca7996b87b14">gp_tolerance</a> = 1.0E-4</td></tr>
-<tr class="memdesc:afa61fd490a6502b6ea4cca7996b87b14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convergence criteria for the gradient ascent to maximize the log of the evidence. <br /></td></tr>
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-<tr class="memitem:a5242d2d8ea000f7202563cabc5739971"><td class="memItemLeft" align="right" valign="top"><a id="a5242d2d8ea000f7202563cabc5739971"></a>
-real(rprec), dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5242d2d8ea000f7202563cabc5739971">gp_cholesky_fact</a> = 0.0</td></tr>
-<tr class="memdesc:a5242d2d8ea000f7202563cabc5739971"><td class="mdescLeft">&#160;</td><td class="mdescRight">The Gaussian process uses a cholesky decompositions to factor a matrix. It assumes that the matrix is positive def. Which is true analytically. This input can be used to add a small offset to the matrix to insure positive def. <br /></td></tr>
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-<tr class="memitem:a90fc95d90dface3a816634e091b7d0c3"><td class="memItemLeft" align="right" valign="top"><a id="a90fc95d90dface3a816634e091b7d0c3"></a>
-character(len=data_short_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a90fc95d90dface3a816634e091b7d0c3">int_method</a> = 'add'</td></tr>
-<tr class="memdesc:a90fc95d90dface3a816634e091b7d0c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integation method. The evaultion the K_LL matrix can require multipe evaluation of a double path integral. Here naive quadrature using rectangle integration with small dx can really slow down v3fit. It is recommended to use the <code>'gleg'</code> method when using the guassian processes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1b604b7bf86240e95222db1c854b0aee">int_num_points</a> = 40</td></tr>
-<tr class="memdesc:a1b604b7bf86240e95222db1c854b0aee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integer control of numerical quadrature. For Gauss-legendre integration This parameter sets the number of nodes to use. <br /></td></tr>
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-<tr class="memitem:a21885f2c19e871826a9de0b86409479a"><td class="memItemLeft" align="right" valign="top"><a id="a21885f2c19e871826a9de0b86409479a"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a21885f2c19e871826a9de0b86409479a">int_size</a> = 0.0025</td></tr>
-<tr class="memdesc:a21885f2c19e871826a9de0b86409479a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Real control of numerical quadrature. Set dx for addivative integration. <br /></td></tr>
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-<tr class="memitem:a5d7e1c2eb69778d16585b8f80c0b8099"><td class="memItemLeft" align="right" valign="top"><a id="a5d7e1c2eb69778d16585b8f80c0b8099"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5d7e1c2eb69778d16585b8f80c0b8099">phi_offset</a> = 0</td></tr>
-<tr class="memdesc:a5d7e1c2eb69778d16585b8f80c0b8099"><td class="mdescLeft">&#160;</td><td class="mdescRight">Offset of plasma relative to the diagnostics. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a741b415bdd48f62e633f18edcfba4767">z_offset</a> = 0</td></tr>
-<tr class="memdesc:a741b415bdd48f62e633f18edcfba4767"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vertical shift of plasma relative to the center. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#adc0364b9f818950f73a6812862c2eb9c">nrstep</a> = 0</td></tr>
-<tr class="memdesc:adc0364b9f818950f73a6812862c2eb9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max number of reconstruction steps to perform. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a700dd5e62d58718bb23610ebd31e52d2">dg2_stop</a> = 0.0</td></tr>
-<tr class="memdesc:a700dd5e62d58718bb23610ebd31e52d2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stopping criterion on change in g^2. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad98c066d04c0f25696a91fed7d54e8ef">cut_svd</a> = 0.0</td></tr>
-<tr class="memdesc:ad98c066d04c0f25696a91fed7d54e8ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for relative Singular Values. <br /></td></tr>
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-<tr class="memitem:a46af949ef5d76853b993d99767e542f1"><td class="memItemLeft" align="right" valign="top"><a id="a46af949ef5d76853b993d99767e542f1"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a46af949ef5d76853b993d99767e542f1">cut_eff</a> = 0.0</td></tr>
-<tr class="memdesc:a46af949ef5d76853b993d99767e542f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected step efficiency. <br /></td></tr>
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-<tr class="memitem:a403d25aae2bd98397290ca374a793c95"><td class="memItemLeft" align="right" valign="top"><a id="a403d25aae2bd98397290ca374a793c95"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a403d25aae2bd98397290ca374a793c95">cut_marg_eff</a> = 0.0</td></tr>
-<tr class="memdesc:a403d25aae2bd98397290ca374a793c95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected marginal step efficiency. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a8aa4f835a2cf486c7567dacbc42da314">cut_delta_a</a> = 0.0</td></tr>
-<tr class="memdesc:a8aa4f835a2cf486c7567dacbc42da314"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected step size. <br /></td></tr>
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-<tr class="memitem:ab1dc0a024974864d287c68ebd3fa4dcb"><td class="memItemLeft" align="right" valign="top"><a id="ab1dc0a024974864d287c68ebd3fa4dcb"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab1dc0a024974864d287c68ebd3fa4dcb">cut_dg2</a> = 0.0</td></tr>
-<tr class="memdesc:ab1dc0a024974864d287c68ebd3fa4dcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected change in g^2. <br /></td></tr>
-<tr class="separator:ab1dc0a024974864d287c68ebd3fa4dcb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb9417098adb81002267eb6a99f64562"><td class="memItemLeft" align="right" valign="top"><a id="acb9417098adb81002267eb6a99f64562"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#acb9417098adb81002267eb6a99f64562">astep_max</a> = 0.0</td></tr>
-<tr class="memdesc:acb9417098adb81002267eb6a99f64562"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum allowable normalized step size. <br /></td></tr>
-<tr class="separator:acb9417098adb81002267eb6a99f64562"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae73b0d72db753653fa16e592cf956876"><td class="memItemLeft" align="right" valign="top">character(len=<a class="el" href="namespacev3fit__input.html#a888aa95a3a2a2bd133199010bdbdc862">v3fit_step_name_length</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">step_type</a> = 'sl'</td></tr>
-<tr class="memdesc:ae73b0d72db753653fa16e592cf956876"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reconstruction step type. Possible values are:  <a href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">More...</a><br /></td></tr>
-<tr class="separator:ae73b0d72db753653fa16e592cf956876"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1f1769a20f19cc5bf06fc7384326f65b"><td class="memItemLeft" align="right" valign="top"><a id="a1f1769a20f19cc5bf06fc7384326f65b"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1f1769a20f19cc5bf06fc7384326f65b">cut_inv_svd</a> = 1.0E-10</td></tr>
-<tr class="memdesc:a1f1769a20f19cc5bf06fc7384326f65b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for singular values in matrix inverse. <br /></td></tr>
-<tr class="separator:a1f1769a20f19cc5bf06fc7384326f65b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad9aa4c21ac7f427d6467bea2c0d492dd"><td class="memItemLeft" align="right" valign="top"><a id="ad9aa4c21ac7f427d6467bea2c0d492dd"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad9aa4c21ac7f427d6467bea2c0d492dd">cut_comp_svd</a> = 0.0</td></tr>
-<tr class="memdesc:ad9aa4c21ac7f427d6467bea2c0d492dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for singular values used in the magnetic data compression. <br /></td></tr>
-<tr class="separator:ad9aa4c21ac7f427d6467bea2c0d492dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac89fb702d3a90ee7b9b20159ed912d82"><td class="memItemLeft" align="right" valign="top"><a id="ac89fb702d3a90ee7b9b20159ed912d82"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac89fb702d3a90ee7b9b20159ed912d82">use_central_diff</a> = .false.</td></tr>
-<tr class="memdesc:ac89fb702d3a90ee7b9b20159ed912d82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use central differencing to compute the jacobian. <br /></td></tr>
-<tr class="separator:ac89fb702d3a90ee7b9b20159ed912d82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3516a594cb5e51020f4aa30ef8e20aa4"><td class="memItemLeft" align="right" valign="top">logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3516a594cb5e51020f4aa30ef8e20aa4">l_zero_xcdot</a> = .true.</td></tr>
-<tr class="memdesc:a3516a594cb5e51020f4aa30ef8e20aa4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Zero out vmec xcdot array.  <a href="namespacev3fit__input.html#a3516a594cb5e51020f4aa30ef8e20aa4">More...</a><br /></td></tr>
-<tr class="separator:a3516a594cb5e51020f4aa30ef8e20aa4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains all the variables and maximum sizes of the inputs for a v3fit namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3FIT task should be copied to a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. All non-parameters are inputs to the namelist input file. </p>
-<p><a class="el" href="namelist_sec.html">Namelist v3fit_main_nli definition</a></p>
-<dl class="section note"><dt>Note</dt><dd>Some of the references are missing here. This is due to a bug in Doxygen when variable decalarations span multiple lines. </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ad531a9ffbbbb3228686b5f7b8152dead"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad531a9ffbbbb3228686b5f7b8152dead">&#9670;&nbsp;</a></span>v3fit_input_find_offset_index()</h2>
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-<div class="memitem">
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-          <td class="memname">integer function v3fit_input::v3fit_input_find_offset_index </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Finds the index of the offset spec. </p>
-<p>The signal offset specification sets ranges of signal indices associated with a reconstructable offset factor. If the index is not within one of these ranges an index of -1 is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the current signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3ebb1c33783f13106c703abf6927e186"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3ebb1c33783f13106c703abf6927e186">&#9670;&nbsp;</a></span>v3fit_input_find_scale_index()</h2>
-
-<div class="memitem">
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-          <td class="memname">integer function v3fit_input::v3fit_input_find_scale_index </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Finds the index of the scaling spec. </p>
-<p>The signal factor specification sets ranges of signal indices associated with a reconstructable scale factor. If the index is not within one of these ranges an index of -1 is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the current signal. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3ee7923a0e8823098df46d2929d1b0ab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3ee7923a0e8823098df46d2929d1b0ab">&#9670;&nbsp;</a></span>v3fit_input_read_namelist()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine v3fit_input::v3fit_input_read_namelist </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Reads the namelist input file. </p>
-<p>Reads the namelist input file. Replaces the sigma and weight values with the the computed specification. If using the old, major and minor radius, add a new limiter to the limiter specification. Determines the number of combination signals if the user has not specified <a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">n_sig_coosig</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000013">Todo:</a></b></dt><dd>FIXME: Remove this when n_sig_coosig is mandatory. </dd></dl>
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-</div>
-</div>
-<a id="a7d975a942827c32691153410374be732"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d975a942827c32691153410374be732">&#9670;&nbsp;</a></span>v3fit_input_write_namelist()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine v3fit_input::v3fit_input_write_namelist </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the namelist input file. </p>
-<p>Writes a formatted namelist input file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Variable Documentation</h2>
-<a id="a5f11fb1eaefb9e1baa4420405c09dff1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5f11fb1eaefb9e1baa4420405c09dff1">&#9670;&nbsp;</a></span>coosig_type</h2>
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-<div class="memitem">
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-          <td class="memname">character(len=combination_type_length), dimension(<a class="el" href="namespacev3fit__input.html#a03926d8eb38a8af365ca1072a5d2754e">v3fit_max_combinations</a>) v3fit_input::coosig_type = 'sum'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Combination type. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacesignal.html" title="Defines the base class of the type signal_class.">signal</a> </dd></dl>
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-</div>
-</div>
-<a id="a11987511aea794ac429ac277a0e5ea9d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a11987511aea794ac429ac277a0e5ea9d">&#9670;&nbsp;</a></span>extcurz_s0</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) v3fit_input::extcurz_s0 = -1.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>External Z current radial position. </p>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000011">Todo:</a></b></dt><dd>FIXME: The label of s0 and u0 are vmec specific. These should be changed to a radial coordinate and poloidal angle. </dd></dl>
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-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a56bb34e313d78d0c5630a83a1dc4d53b">&#9670;&nbsp;</a></span>gp_model_type</h2>
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-          <td class="memname">character(len=data_short_name_length), dimension(max_gaussprocess) v3fit_input::gp_model_type = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Gaussian process model type. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacesignal.html" title="Defines the base class of the type signal_class.">signal</a> </dd></dl>
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-</div>
-</div>
-<a id="a3516a594cb5e51020f4aa30ef8e20aa4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3516a594cb5e51020f4aa30ef8e20aa4">&#9670;&nbsp;</a></span>l_zero_xcdot</h2>
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-<div class="memitem">
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-          <td class="memname">logical v3fit_input::l_zero_xcdot = .true.</td>
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-<p>Zero out vmec xcdot array. </p>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000012">Todo:</a></b></dt><dd>FIXME: VMEC specific. Not implemented. </dd></dl>
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-</div>
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#af745a2d519ffade882e38c64e7b136da">&#9670;&nbsp;</a></span>model_ne_type</h2>
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-        </tr>
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-<p>Specify how electron density is computed by the model. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemodel.html" title="Defines the base class of the type model_class. The model contains information not specific to the eq...">model</a> </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000010">Todo:</a></b></dt><dd>FIXME: New coding contains a model_ne_type that old code did not have. Make the default value pp_ne for compatibility. Eventially this shoud be set back to none and users should set model_ne_type in the namelist input. </dd></dl>
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-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000014">Deprecated:</a></b></dt><dd>Specify how soft x-ray emissivity is computed by the model. </dd></dl>
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-</div>
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-        </tr>
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-</div><div class="memdoc">
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-<p>Specify how soft x-ray emissivity is computed by the model. </p>
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-</div>
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-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Specify how electron temperature is computed by the model. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemodel.html" title="Defines the base class of the type model_class. The model contains information not specific to the eq...">model</a> </dd></dl>
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-</div>
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-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Specify how electron temperature is computed by the model. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacemodel.html" title="Defines the base class of the type model_class. The model contains information not specific to the eq...">model</a> </dd></dl>
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-</div>
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-      </table>
-</div><div class="memdoc">
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-<p>The v3fit task. Possible values are. </p>
-<ol type="1">
-<li><code>equilibrium</code> Solve the equilibrium.<ol type="a">
-<li><code>v3post</code> Solve the equilibrium and compute modeled signals.</li>
-<li><code>reconstruct</code> Reconstruct the equilibirum.</li>
-<li><code>units_tests</code> Run the internal unit tests. </li>
-</ol>
-</li>
-</ol>
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-</div>
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-<div class="memitem">
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-          <td class="memname">integer v3fit_input::n_sdata_o = 0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000015">Deprecated:</a></b></dt><dd>Number of observed signals. </dd></dl>
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-      <table class="memname">
-        <tr>
-          <td class="memname">integer v3fit_input::na_s_desc = <a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_max_signals</a></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Maximum number of signals to create. </p>
-<dl class="section note"><dt>Note</dt><dd>this needs to be greater than or equal to total number of signals used. The signal arrays are resized to free up memory if this value is larger than the number of signals constructed. If this value is equal to the number of signals, the resize step can be avoided. </dd></dl>
-
-</div>
-</div>
-<a id="a5fac45fcf9c6b115a7e4bb7cae7854c8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5fac45fcf9c6b115a7e4bb7cae7854c8">&#9670;&nbsp;</a></span>pp_ne_af</h2>
-
-<div class="memitem">
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-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_ne_af = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of af_coefficients electron density splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a391bee37cf57c463c16e5237121f2950"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a391bee37cf57c463c16e5237121f2950">&#9670;&nbsp;</a></span>pp_ne_as</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_ne_as = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of as_coefficients electron density splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a5ebd8b58de885b8bd44779ef5bbadb12"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5ebd8b58de885b8bd44779ef5bbadb12">&#9670;&nbsp;</a></span>pp_ne_b</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec), dimension(ilb_b:iub_b) v3fit_input::pp_ne_b = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of b_coefficients for the electron density profile. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="acf084faed4cf0c1352fcb0ded4a9d525"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acf084faed4cf0c1352fcb0ded4a9d525">&#9670;&nbsp;</a></span>pp_ne_ptype</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=p_type_len) v3fit_input::pp_ne_ptype = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Model electron density profile, parameterized profile type. </p>
-<ol type="1">
-<li><code>'none'</code> Not part of the model.<ol type="a">
-<li><code>'pp_ne'</code> Calculated from the parameterized profile pp_ne.</li>
-<li><code>'pp_te_p'</code> Calculated from the pp_te and the VMEC pressure, <dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-</li>
-</ol>
-</li>
-</ol>
-
-</div>
-</div>
-<a id="a85e26804e0bad2a97fe7582c1db8768c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85e26804e0bad2a97fe7582c1db8768c">&#9670;&nbsp;</a></span>pp_sxrem_af</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_sxrem_af = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000013">Deprecated:</a></b></dt><dd>Array of af_coefficients soft x-ray emissvity profile splines </dd></dl>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="af9d99df5480b5043e77b21a9d6099da8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af9d99df5480b5043e77b21a9d6099da8">&#9670;&nbsp;</a></span>pp_sxrem_af_a</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(max_sxrem_profiles,iub_asf) v3fit_input::pp_sxrem_af_a = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of af_coefficients soft x-ray emissvity profile splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="ad7a27d4aa3c3a65027b34183f95533a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad7a27d4aa3c3a65027b34183f95533a4">&#9670;&nbsp;</a></span>pp_sxrem_as</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_sxrem_as = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000012">Deprecated:</a></b></dt><dd>Array of as_coefficients soft x-ray emissvity profile splines </dd></dl>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a499f4203b76175c919f656827e84b050"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a499f4203b76175c919f656827e84b050">&#9670;&nbsp;</a></span>pp_sxrem_as_a</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">real (rprec), dimension(max_sxrem_profiles,iub_asf) v3fit_input::pp_sxrem_as_a = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of as_coefficients soft x-ray emissvity profile splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a9cc45d9107490ae0070289782b75730c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9cc45d9107490ae0070289782b75730c">&#9670;&nbsp;</a></span>pp_sxrem_b</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec), dimension(ilb_b:iub_b) v3fit_input::pp_sxrem_b = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000011">Deprecated:</a></b></dt><dd>Array of b_coefficients for the soft x-ray emissvity profile </dd></dl>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="abc461ed4a3957e1e4f450c5f61011b9d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abc461ed4a3957e1e4f450c5f61011b9d">&#9670;&nbsp;</a></span>pp_sxrem_b_a</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">real (rprec), dimension(max_sxrem_profiles,ilb_b:iub_b) v3fit_input::pp_sxrem_b_a = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of b_coefficients for the soft x-ray emissvity profile. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="afbb75117e851be78b8e4360e7383c199"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afbb75117e851be78b8e4360e7383c199">&#9670;&nbsp;</a></span>pp_sxrem_ptype</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=p_type_len) v3fit_input::pp_sxrem_ptype = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000010">Deprecated:</a></b></dt><dd>Model soft x-ray emissvity profile, parameterized profile type.<ol type="1">
-<li><code>'none'</code> Not part of the model.</li>
-<li><code>'pp_sxrem'</code> Calculated from the parameterized profile pp_sxrem. </li>
-</ol>
-</dd></dl>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="ac44e39737eeaa08518fcc237d4db83ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac44e39737eeaa08518fcc237d4db83ff">&#9670;&nbsp;</a></span>pp_sxrem_ptype_a</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=p_type_len), dimension(max_sxrem_profiles) v3fit_input::pp_sxrem_ptype_a = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Model soft x-ray emissvity profile, parameterized profile type. </p>
-<ol type="1">
-<li><code>'none'</code> Not part of the model.<ol type="a">
-<li><code>'pp_sxrem'</code> Calculated from the parameterized profile pp_sxrem. <dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-</li>
-</ol>
-</li>
-</ol>
-
-</div>
-</div>
-<a id="a5d3fc1eae19a61d96469c773e1f5c239"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d3fc1eae19a61d96469c773e1f5c239">&#9670;&nbsp;</a></span>pp_te_af</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_te_af = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of af_coefficients electron temperature splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a2adbf6ccd19859db9a684016c86e2a9a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2adbf6ccd19859db9a684016c86e2a9a">&#9670;&nbsp;</a></span>pp_te_as</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_te_as = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of as_coefficients electron temperature splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="ad699c5f4f2865dc9f6be9660bebbbf1c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad699c5f4f2865dc9f6be9660bebbbf1c">&#9670;&nbsp;</a></span>pp_te_b</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(ilb_b:iub_b) v3fit_input::pp_te_b = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of b_coefficients for the electron temperature profile. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="aa7d17618683967adb0bd8a5bdf9ff806"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa7d17618683967adb0bd8a5bdf9ff806">&#9670;&nbsp;</a></span>pp_te_ptype</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=p_type_len) v3fit_input::pp_te_ptype = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Model electron temperature profile, parameterized profile type. </p>
-<ol type="1">
-<li><code>'none'</code> Not part of the model.<ol type="a">
-<li><code>'pp_te'</code> Calculated from the parameterized profile pp_te.</li>
-<li><code>'pp_ne_vmec_p','pp_ne_p'</code> Calculated from the pp_ne and the VMEC pressure. <dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-</li>
-</ol>
-</li>
-</ol>
-
-</div>
-</div>
-<a id="aeb653113a0e8f71d6dfbbb6e3aa41e7b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeb653113a0e8f71d6dfbbb6e3aa41e7b">&#9670;&nbsp;</a></span>pp_ti_af</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_ti_af = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of af_coefficients ion temperature splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="ab25ad199efab607402f3efa28b05c259"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab25ad199efab607402f3efa28b05c259">&#9670;&nbsp;</a></span>pp_ti_as</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec), dimension(iub_asf) v3fit_input::pp_ti_as = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of as_coefficients ion temperature splines. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a26817309fd12dda7fc109e13e1e7b6c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a26817309fd12dda7fc109e13e1e7b6c3">&#9670;&nbsp;</a></span>pp_ti_b</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">real (rprec), dimension(ilb_b:iub_b) v3fit_input::pp_ti_b = 0.0</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Array of b_coefficients for the ion temperature profile. </p>
-<dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-
-</div>
-</div>
-<a id="a16d4351a6404cbf48ef877e5345b13a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16d4351a6404cbf48ef877e5345b13a4">&#9670;&nbsp;</a></span>pp_ti_ptype</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=p_type_len) v3fit_input::pp_ti_ptype = 'none'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Model ion temperature profile, parameterized profile type. </p>
-<ol type="1">
-<li><code>'none'</code> Not part of the model.<ol type="a">
-<li><code>'pp_ti'</code> Calculated from the parameterized profile pp_ti. <dl class="section see"><dt>See also</dt><dd>pprofile_T </dd></dl>
-</li>
-</ol>
-</li>
-</ol>
-
-</div>
-</div>
-<a id="ad37a237759d4d29d0d8b029a7c3274be"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad37a237759d4d29d0d8b029a7c3274be">&#9670;&nbsp;</a></span>rp_range_type</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length), dimension(<a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_max_parameters</a>,2) v3fit_input::rp_range_type = 'infinity'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parameter range types. The first index is the lower range and second index the upper range. </p>
-<ol type="1">
-<li><code>'infinity'</code> Unbounded<ol type="a">
-<li><code>'value'</code> Bounded by the value of rp_range_value</li>
-<li><code>&lt;other&gt;</code> Bounded by an equilibrium parameter. </li>
-</ol>
-</li>
-</ol>
-
-</div>
-</div>
-<a id="ae73b0d72db753653fa16e592cf956876"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae73b0d72db753653fa16e592cf956876">&#9670;&nbsp;</a></span>step_type</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=<a class="el" href="namespacev3fit__input.html#a888aa95a3a2a2bd133199010bdbdc862">v3fit_step_name_length</a>) v3fit_input::step_type = 'sl'</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reconstruction step type. Possible values are: </p>
-<ol type="1">
-<li><code>'sl'</code> - straight line<ol type="a">
-<li><code>'seg'</code> - segmented</li>
-<li><code>'lm'</code> - Levenberg-Marquardt, <dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacereconstruction.html" title="Defines the base class of the type reconstruction_class. This class contains the minimization algorit...">reconstruction</a> </dd></dl>
-</li>
-</ol>
-</li>
-</ol>
-
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-</div>
-<a id="aac2c714ea366acf1f172fd2d67c46bfd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac2c714ea366acf1f172fd2d67c46bfd">&#9670;&nbsp;</a></span>v3fit_max_spec_size</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer, parameter v3fit_input::v3fit_max_spec_size = 150</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Maximum size of the easy specification arrays. </p>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__input.html#a84bec11b26633f36ec725c42617cd579" title="Sigma specification lower index.">sdo_s_spec_imin</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#afde913ecbabb4dbe6d11a2078f846370" title="Sigma specification upper index.">sdo_s_spec_imax</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#a640d556ef08bd4ecdd97af9788d1bfd8" title="Sigma specification floor.">sdo_s_spec_floor</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#a0e1a5aa868d02a69a147362a819b6674" title="Sigma specification fraction.">sdo_s_spec_fraction</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#a4baaac56042fab4c55405184367ce17e" title="Weight specification lower index.">sdo_w_spec_imin</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#abb1616830d26e0ab66f3b46d59f81831" title="Weight specification upper index.">sdo_w_spec_imax</a> </dd>
-<dd>
-<a class="el" href="namespacev3fit__input.html#a2b0c487db8a1b6aa5eb18d3919aa31fc" title="Weight specification weight.">sdo_w_spec_weight</a> </dd></dl>
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-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<p>Defines the base class of the type <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>.  
-<a href="namespacev3fit__params.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__recon__class.html">param_recon_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class to hold variables needed when a parameter is a reconstruction parameter.  <a href="structv3fit__params_1_1param__recon__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__locking__class.html">param_locking_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class to hold variables needed when a parameter is a locking parameter. The locking parameter coefficents are stored in the correlation array of the parent type.  <a href="structv3fit__params_1_1param__locking__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__class.html">param_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a reconstructed parameter. An upper and lower bound may be set for the parameter value.  <a href="structv3fit__params_1_1param__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__pointer.html">param_pointer</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer to a parameter object. Used for creating arrays of signal pointers. This is needed because fortran does not allow arrays of pointers directly.  <a href="structv3fit__params_1_1param__pointer.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__construct.html">param_construct</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for the construction of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> types using <a class="el" href="interfacev3fit__params_1_1param__construct.html#a4cf2357c5f3fcfc18f57dc8f67c5d21a">param_construct_basic</a> or <a class="el" href="interfacev3fit__params_1_1param__construct.html#a5ecc5857245f36ea4582da8024617c94">param_construct_recon</a>.  <a href="interfacev3fit__params_1_1param__construct.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__write__step__data.html">param_write_step_data</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for the writting of <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> data to the result file using <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#a94c0f0d853dc173a22a337974b97ef4c">param_write_step_data_1</a> or <a class="el" href="interfacev3fit__params_1_1param__write__step__data.html#aaa94ac083b4e6cb83808ad1f6bca5be0">param_write_step_data_2</a>.  <a href="interfacev3fit__params_1_1param__write__step__data.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a34e266194d23bfa72b7a615919920eb6"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a34e266194d23bfa72b7a615919920eb6">param_construct_basic</a> (a_model, param_name, indices, num_params)</td></tr>
-<tr class="memdesc:a34e266194d23bfa72b7a615919920eb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a34e266194d23bfa72b7a615919920eb6">More...</a><br /></td></tr>
-<tr class="separator:a34e266194d23bfa72b7a615919920eb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:accfafa5d3c887d5b717c7f6587782ce5"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#accfafa5d3c887d5b717c7f6587782ce5">param_construct_recon</a> (a_model, param_name, indices, vrnc, range_type, range_indices, range_value, num_signals, num_params)</td></tr>
-<tr class="memdesc:accfafa5d3c887d5b717c7f6587782ce5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#accfafa5d3c887d5b717c7f6587782ce5">More...</a><br /></td></tr>
-<tr class="separator:accfafa5d3c887d5b717c7f6587782ce5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5a9d876598261d7a0abfafb748b70bd4"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a5a9d876598261d7a0abfafb748b70bd4">param_construct_locking</a> (a_model, param_name, indices, set, set_indices, set_coeff, eq_comm)</td></tr>
-<tr class="memdesc:a5a9d876598261d7a0abfafb748b70bd4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a5a9d876598261d7a0abfafb748b70bd4">More...</a><br /></td></tr>
-<tr class="separator:a5a9d876598261d7a0abfafb748b70bd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a70ed70103621610c311a387475fcf7db"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a70ed70103621610c311a387475fcf7db">param_destruct</a> (this)</td></tr>
-<tr class="memdesc:a70ed70103621610c311a387475fcf7db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a70ed70103621610c311a387475fcf7db">More...</a><br /></td></tr>
-<tr class="separator:a70ed70103621610c311a387475fcf7db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f0815c66516006aa28a94e06b322d05"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a4f0815c66516006aa28a94e06b322d05">param_set_value</a> (this, a_model, value, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a4f0815c66516006aa28a94e06b322d05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameter value.  <a href="namespacev3fit__params.html#a4f0815c66516006aa28a94e06b322d05">More...</a><br /></td></tr>
-<tr class="separator:a4f0815c66516006aa28a94e06b322d05"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a34a6dd1a05a79379169024dd7b51f725"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a34a6dd1a05a79379169024dd7b51f725">param_set_lock_value</a> (this, a_model, eq_comm)</td></tr>
-<tr class="memdesc:a34a6dd1a05a79379169024dd7b51f725"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the locking parameter value.  <a href="namespacev3fit__params.html#a34a6dd1a05a79379169024dd7b51f725">More...</a><br /></td></tr>
-<tr class="separator:a34a6dd1a05a79379169024dd7b51f725"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab3291769ed406ce40b0d829782805cab"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">param_get_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:ab3291769ed406ce40b0d829782805cab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the parameter value.  <a href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">More...</a><br /></td></tr>
-<tr class="separator:ab3291769ed406ce40b0d829782805cab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc9ec375d981bab4c42eee4196d7aecb"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">param_get_name</a> (this, a_model)</td></tr>
-<tr class="memdesc:afc9ec375d981bab4c42eee4196d7aecb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the parameter name.  <a href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">More...</a><br /></td></tr>
-<tr class="separator:afc9ec375d981bab4c42eee4196d7aecb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a8e2a1ae7e7d8bd91e192b32ea8b198f6">param_get_lower_range_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the lower boundary value.  <a href="namespacev3fit__params.html#a8e2a1ae7e7d8bd91e192b32ea8b198f6">More...</a><br /></td></tr>
-<tr class="separator:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5a3abbc0abdc4fda6169163295adc8a9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a5a3abbc0abdc4fda6169163295adc8a9">param_get_upper_range_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:a5a3abbc0abdc4fda6169163295adc8a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the upper boundary value.  <a href="namespacev3fit__params.html#a5a3abbc0abdc4fda6169163295adc8a9">More...</a><br /></td></tr>
-<tr class="separator:a5a3abbc0abdc4fda6169163295adc8a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73dff4d4c5afd66a0af37c4720f7390a"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a73dff4d4c5afd66a0af37c4720f7390a">param_get_lower_range_type</a> (this, a_model)</td></tr>
-<tr class="memdesc:a73dff4d4c5afd66a0af37c4720f7390a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the lower boundary type description.  <a href="namespacev3fit__params.html#a73dff4d4c5afd66a0af37c4720f7390a">More...</a><br /></td></tr>
-<tr class="separator:a73dff4d4c5afd66a0af37c4720f7390a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af64d93472b5b55696c1a5ae3bccb5485"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#af64d93472b5b55696c1a5ae3bccb5485">param_get_upper_range_type</a> (this, a_model)</td></tr>
-<tr class="memdesc:af64d93472b5b55696c1a5ae3bccb5485"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the upper boundary type description.  <a href="namespacev3fit__params.html#af64d93472b5b55696c1a5ae3bccb5485">More...</a><br /></td></tr>
-<tr class="separator:af64d93472b5b55696c1a5ae3bccb5485"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad93a7074ca8997d27f6553a177239524"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ad93a7074ca8997d27f6553a177239524">param_is_in_lower_range</a> (this, a_model, value)</td></tr>
-<tr class="memdesc:ad93a7074ca8997d27f6553a177239524"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the value is in the lower range.  <a href="namespacev3fit__params.html#ad93a7074ca8997d27f6553a177239524">More...</a><br /></td></tr>
-<tr class="separator:ad93a7074ca8997d27f6553a177239524"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abecde14d0aadfd2297edbc2419e49a4a"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#abecde14d0aadfd2297edbc2419e49a4a">param_is_in_upper_range</a> (this, a_model, value)</td></tr>
-<tr class="memdesc:abecde14d0aadfd2297edbc2419e49a4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the value is in the upper range.  <a href="namespacev3fit__params.html#abecde14d0aadfd2297edbc2419e49a4a">More...</a><br /></td></tr>
-<tr class="separator:abecde14d0aadfd2297edbc2419e49a4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6bdfb0b942285942e55bc20f958ead56"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a6bdfb0b942285942e55bc20f958ead56">param_increment</a> (this, a_model, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a6bdfb0b942285942e55bc20f958ead56"><td class="mdescLeft">&#160;</td><td class="mdescRight">Increments the parameter value.  <a href="namespacev3fit__params.html#a6bdfb0b942285942e55bc20f958ead56">More...</a><br /></td></tr>
-<tr class="separator:a6bdfb0b942285942e55bc20f958ead56"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a49667f7fd107c9a891fef71f80b19865"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a49667f7fd107c9a891fef71f80b19865">param_decrement</a> (this, a_model, eq_comm)</td></tr>
-<tr class="memdesc:a49667f7fd107c9a891fef71f80b19865"><td class="mdescLeft">&#160;</td><td class="mdescRight">Decrements the parameter value.  <a href="namespacev3fit__params.html#a49667f7fd107c9a891fef71f80b19865">More...</a><br /></td></tr>
-<tr class="separator:a49667f7fd107c9a891fef71f80b19865"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac18b6e97dbb78fba12fc66b94e001655"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ac18b6e97dbb78fba12fc66b94e001655">param_write</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:ac18b6e97dbb78fba12fc66b94e001655"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter to an output file.  <a href="namespacev3fit__params.html#ac18b6e97dbb78fba12fc66b94e001655">More...</a><br /></td></tr>
-<tr class="separator:ac18b6e97dbb78fba12fc66b94e001655"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a914df41c608427e1257503dd347255fb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a914df41c608427e1257503dd347255fb">param_write_short</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:a914df41c608427e1257503dd347255fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter to an output file.  <a href="namespacev3fit__params.html#a914df41c608427e1257503dd347255fb">More...</a><br /></td></tr>
-<tr class="separator:a914df41c608427e1257503dd347255fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad934796db46bae3b80895d61c688f9f0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ad934796db46bae3b80895d61c688f9f0">param_write_header</a> (iou)</td></tr>
-<tr class="memdesc:ad934796db46bae3b80895d61c688f9f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out parameter header information to an output file.  <a href="namespacev3fit__params.html#ad934796db46bae3b80895d61c688f9f0">More...</a><br /></td></tr>
-<tr class="separator:ad934796db46bae3b80895d61c688f9f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#af5cfe9e4aed01f4358cf7bc6a471cc55">param_write_header_short</a> (iou)</td></tr>
-<tr class="memdesc:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out parameter header information to an output file.  <a href="namespacev3fit__params.html#af5cfe9e4aed01f4358cf7bc6a471cc55">More...</a><br /></td></tr>
-<tr class="separator:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab8812aa6b828e6439b8079a5619d6c55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ab8812aa6b828e6439b8079a5619d6c55">param_write_correlation</a> (this, iou, a_model)</td></tr>
-<tr class="memdesc:ab8812aa6b828e6439b8079a5619d6c55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter covariance matrix row.  <a href="namespacev3fit__params.html#ab8812aa6b828e6439b8079a5619d6c55">More...</a><br /></td></tr>
-<tr class="separator:ab8812aa6b828e6439b8079a5619d6c55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2a907c3cded3e40bd23ee7577219ab75"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a2a907c3cded3e40bd23ee7577219ab75">param_write_step_data_1</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id, param_sem_id)</td></tr>
-<tr class="memdesc:a2a907c3cded3e40bd23ee7577219ab75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="namespacev3fit__params.html#a2a907c3cded3e40bd23ee7577219ab75">More...</a><br /></td></tr>
-<tr class="separator:a2a907c3cded3e40bd23ee7577219ab75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c277740e1c647f20b17e48cadf658b9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a3c277740e1c647f20b17e48cadf658b9">param_write_step_data_2</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id)</td></tr>
-<tr class="memdesc:a3c277740e1c647f20b17e48cadf658b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="namespacev3fit__params.html#a3c277740e1c647f20b17e48cadf658b9">More...</a><br /></td></tr>
-<tr class="separator:a3c277740e1c647f20b17e48cadf658b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a2270758b69ee03d9d5bf0c1d9db1814e">param_restart</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart the parameter.  <a href="namespacev3fit__params.html#a2270758b69ee03d9d5bf0c1d9db1814e">More...</a><br /></td></tr>
-<tr class="separator:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca97eb081da6b2eb398caecac155a492"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aca97eb081da6b2eb398caecac155a492">param_sync_value</a> (this, a_model, recon_comm, eq_comm, is_central)</td></tr>
-<tr class="memdesc:aca97eb081da6b2eb398caecac155a492"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the param value to children.  <a href="namespacev3fit__params.html#aca97eb081da6b2eb398caecac155a492">More...</a><br /></td></tr>
-<tr class="separator:aca97eb081da6b2eb398caecac155a492"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b0bf1537519a547895781151859f3a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a6b0bf1537519a547895781151859f3a6">param_send_delta</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a6b0bf1537519a547895781151859f3a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sends the delta used.  <a href="namespacev3fit__params.html#a6b0bf1537519a547895781151859f3a6">More...</a><br /></td></tr>
-<tr class="separator:a6b0bf1537519a547895781151859f3a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#afae8b3100b6ef5d21ae7bb20dc54e6e0">param_recv_delta</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receives the delta used.  <a href="namespacev3fit__params.html#afae8b3100b6ef5d21ae7bb20dc54e6e0">More...</a><br /></td></tr>
-<tr class="separator:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a40a14269e648de4cb9b2cbe4e1a3542e">param_sync_delta</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync the delta used.  <a href="namespacev3fit__params.html#a40a14269e648de4cb9b2cbe4e1a3542e">More...</a><br /></td></tr>
-<tr class="separator:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a58a43e136623f6eb084ad9672124eeda"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a58a43e136623f6eb084ad9672124eeda">param_sync_child</a> (this, a_model, index, recon_comm, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a58a43e136623f6eb084ad9672124eeda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync the parameter value from a child to the parent.  <a href="namespacev3fit__params.html#a58a43e136623f6eb084ad9672124eeda">More...</a><br /></td></tr>
-<tr class="separator:a58a43e136623f6eb084ad9672124eeda"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ae462e5b528d9d506896ef1c58a429fd9"><td class="memItemLeft" align="right" valign="top"><a id="ae462e5b528d9d506896ef1c58a429fd9"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ae462e5b528d9d506896ef1c58a429fd9">param_range_no_type</a> = -1</td></tr>
-<tr class="memdesc:ae462e5b528d9d506896ef1c58a429fd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">No bounding type specified. <br /></td></tr>
-<tr class="separator:ae462e5b528d9d506896ef1c58a429fd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8fb6a41420df6beab495bfe91ad7287"><td class="memItemLeft" align="right" valign="top"><a id="aa8fb6a41420df6beab495bfe91ad7287"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aa8fb6a41420df6beab495bfe91ad7287">param_range_value_type</a> = 0</td></tr>
-<tr class="memdesc:aa8fb6a41420df6beab495bfe91ad7287"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is bounded by a value. <br /></td></tr>
-<tr class="separator:aa8fb6a41420df6beab495bfe91ad7287"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a065c409760b2feee997a7ff590d476ba"><td class="memItemLeft" align="right" valign="top"><a id="a065c409760b2feee997a7ff590d476ba"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a065c409760b2feee997a7ff590d476ba">param_range_infinity_type</a> = 1</td></tr>
-<tr class="memdesc:a065c409760b2feee997a7ff590d476ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is unbounded. <br /></td></tr>
-<tr class="separator:a065c409760b2feee997a7ff590d476ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="memItemLeft" align="right" valign="top"><a id="a3356363a8a30a7c7fd8300cfb28c03b5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a3356363a8a30a7c7fd8300cfb28c03b5">param_range_parameter_type</a> = 2</td></tr>
-<tr class="memdesc:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is bounded by another parameter. <br /></td></tr>
-<tr class="separator:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="memItemLeft" align="right" valign="top"><a id="aa44fbec314cdb6c9c5b1d4a1a492b8b2"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aa44fbec314cdb6c9c5b1d4a1a492b8b2">param_max_increment_steps</a> = 5</td></tr>
-<tr class="memdesc:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of attemps to change the parameter increment size. <br /></td></tr>
-<tr class="separator:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4837c38992a305cabe9f3859d7b55f1f"><td class="memItemLeft" align="right" valign="top"><a id="a4837c38992a305cabe9f3859d7b55f1f"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a4837c38992a305cabe9f3859d7b55f1f">param_div_factor</a> = 10.0</td></tr>
-<tr class="memdesc:a4837c38992a305cabe9f3859d7b55f1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Division factor to decrease the step size. <br /></td></tr>
-<tr class="separator:a4837c38992a305cabe9f3859d7b55f1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a34e266194d23bfa72b7a615919920eb6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a34e266194d23bfa72b7a615919920eb6">&#9670;&nbsp;</a></span>param_construct_basic()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer v3fit_params::param_construct_basic </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_params</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. Parameters are converted from strings to an internal id representation by either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. This version is used to construct basic parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>An instance of a <a class="el" href="namespacemodel.html">model</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>The array indices of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_params</td><td>Number of parameters. USed to determine the size of the <a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">param_class::correlation</a> arrays. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a5a9d876598261d7a0abfafb748b70bd4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5a9d876598261d7a0abfafb748b70bd4">&#9670;&nbsp;</a></span>param_construct_locking()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer v3fit_params::param_construct_locking </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>set</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>set_indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>set_coeff</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. Parameters are converted from strings to an internal id representation by either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. This version is used to construct locking parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>An instance of a <a class="el" href="namespacemodel.html">model</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>The array indices of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">set</td><td>Array of parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">set_indices</td><td>Array of parameters indices for parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">set_coeff</td><td>Coefficients for the parameters to lock to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="accfafa5d3c887d5b717c7f6587782ce5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#accfafa5d3c887d5b717c7f6587782ce5">&#9670;&nbsp;</a></span>param_construct_recon()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>) function, pointer v3fit_params::param_construct_recon </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>vrnc</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_type</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(2,2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_indices</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(2), intent(in)&#160;</td>
-          <td class="paramname"><em>range_value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_signals</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_params</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. Parameters are converted from strings to an internal id representation by either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>. This version is used to construct reconstruction parameters.</p>
-<p>Parameter boundaries are specified by a range type. This range type may be one of three types. 'infinity' represents an unbounded case. 'value' represents a bounds by a fixed value. By specifying another parameter name, the boundary will be bounded by a fixed or varying parameter. The bounding parameter string is converted into an internal id representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>An instance of a <a class="el" href="namespacemodel.html">model</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>The name of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">indices</td><td>The array indices of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vrnc</td><td>The maximum incremental step size. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_type</td><td>Range type of the bounds. Values can be 'infinity', 'value' or the name of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_indices</td><td>The array indices of the boundary parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">range_value</td><td>Value of a boundary. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_signals</td><td>Number of signals. Used to determine the size of the <a class="el" href="structv3fit__params_1_1param__recon__class.html#a3426102cdc2791aa5bf82e29d9c3f056">param_recon_class::sem</a> arrays. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_params</td><td>Number of parameters. Used to determine the size of the <a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">param_class::correlation</a> arrays. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a49667f7fd107c9a891fef71f80b19865"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a49667f7fd107c9a891fef71f80b19865">&#9670;&nbsp;</a></span>param_decrement()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_decrement </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Decrements the parameter value. </p>
-<p>The value is decremented by the delta. The incrementing function has already performed the bounds checking so there is no need to do that here.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a70ed70103621610c311a387475fcf7db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a70ed70103621610c311a387475fcf7db">&#9670;&nbsp;</a></span>param_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a73dff4d4c5afd66a0af37c4720f7390a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a73dff4d4c5afd66a0af37c4720f7390a">&#9670;&nbsp;</a></span>param_get_lower_range_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function v3fit_params::param_get_lower_range_type </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the lower boundary type description. </p>
-<p>Gets lower boundary type description.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the lower boundary type. </dd></dl>
-
-</div>
-</div>
-<a id="a8e2a1ae7e7d8bd91e192b32ea8b198f6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8e2a1ae7e7d8bd91e192b32ea8b198f6">&#9670;&nbsp;</a></span>param_get_lower_range_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function v3fit_params::param_get_lower_range_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the lower boundary value. </p>
-<p>Gets lower boundary value. The results of this function are invalid if the bounding type is <a class="el" href="namespacev3fit__params.html#a065c409760b2feee997a7ff590d476ba">param_range_infinity_type</a> or <a class="el" href="namespacev3fit__params.html#ae462e5b528d9d506896ef1c58a429fd9">param_range_no_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The lower bounding value. </dd></dl>
-
-</div>
-</div>
-<a id="afc9ec375d981bab4c42eee4196d7aecb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afc9ec375d981bab4c42eee4196d7aecb">&#9670;&nbsp;</a></span>param_get_name()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function v3fit_params::param_get_name </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the parameter name. </p>
-<p>Converts the parameter id from either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parameter name. </dd></dl>
-
-</div>
-</div>
-<a id="af64d93472b5b55696c1a5ae3bccb5485"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af64d93472b5b55696c1a5ae3bccb5485">&#9670;&nbsp;</a></span>param_get_upper_range_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function v3fit_params::param_get_upper_range_type </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the upper boundary type description. </p>
-<p>Gets upper boundary type description.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string description of the upper boundary type. </dd></dl>
-
-</div>
-</div>
-<a id="a5a3abbc0abdc4fda6169163295adc8a9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5a3abbc0abdc4fda6169163295adc8a9">&#9670;&nbsp;</a></span>param_get_upper_range_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function v3fit_params::param_get_upper_range_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the upper boundary value. </p>
-<p>Gets upper boundary value. The results of this function are invalid if the bounding type is <a class="el" href="namespacev3fit__params.html#a065c409760b2feee997a7ff590d476ba">param_range_infinity_type</a> or <a class="el" href="namespacev3fit__params.html#ae462e5b528d9d506896ef1c58a429fd9">param_range_no_type</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The upper bounding value. </dd></dl>
-
-</div>
-</div>
-<a id="ab3291769ed406ce40b0d829782805cab"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab3291769ed406ce40b0d829782805cab">&#9670;&nbsp;</a></span>param_get_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function v3fit_params::param_get_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the parameter value. </p>
-<p>Gets the current parameter value from either the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The parameter value. </dd></dl>
-
-</div>
-</div>
-<a id="a6bdfb0b942285942e55bc20f958ead56"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6bdfb0b942285942e55bc20f958ead56">&#9670;&nbsp;</a></span>param_increment()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_increment </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Increments the parameter value. </p>
-<p>The value is incremented by the vrnc. The incremented value is then checked if the new value is in range. If the value is out of range, the value is incremented in the opposite direction. If the incremented value is outside of both ranges, the step size value is halved and the procedure is repeated. Five attempts are made until the function quits with an error. If successful, the actual step size used is cached in <a class="el" href="structv3fit__params_1_1param__recon__class.html#a93821e8af38014b0811a32439d4dcb5e">param_recon_class::delta</a> for normalization purposes.</p>
-<p>If central differencing is used, both the upper and lower bounds must be checked. Starting with half the parameter vrnc, the change in parameter is divided until the change in parameter fits into both the upper and lower bounds.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_central</td><td>Central differencing is being used. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad93a7074ca8997d27f6553a177239524"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad93a7074ca8997d27f6553a177239524">&#9670;&nbsp;</a></span>param_is_in_lower_range()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function v3fit_params::param_is_in_lower_range </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the value is in the lower range. </p>
-<p>If the value is less than the bounding value, the parameter value is out of range.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>A parameter value to check. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True for in range and false for out of range. </dd></dl>
-
-</div>
-</div>
-<a id="abecde14d0aadfd2297edbc2419e49a4a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abecde14d0aadfd2297edbc2419e49a4a">&#9670;&nbsp;</a></span>param_is_in_upper_range()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function v3fit_params::param_is_in_upper_range </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if the value is in the upper range. </p>
-<p>If the value is greater than the bounding value, the parameter value is out of range.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>A parameter value to check. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True for in range and false for out of range. </dd></dl>
-
-</div>
-</div>
-<a id="afae8b3100b6ef5d21ae7bb20dc54e6e0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afae8b3100b6ef5d21ae7bb20dc54e6e0">&#9670;&nbsp;</a></span>param_recv_delta()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_recv_delta </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Receives the delta used. </p>
-<p>Receives the value of delta used in the child process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the reconstruction parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI recon_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2270758b69ee03d9d5bf0c1d9db1814e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2270758b69ee03d9d5bf0c1d9db1814e">&#9670;&nbsp;</a></span>param_restart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_restart </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_value_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_sigma_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_corr_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Restart the parameter. </p>
-<p>Restarts a parameter from the result file. This reloads and sets the value, sigma and correlation. All other values are set when the namelist input file was read.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>Netcdf if for the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step number to restart from. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_value_id</td><td>NetCDF variable id of the parameter value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_sigma_id</td><td>NetCDF variable id of the parameter sigma. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_corr_id</td><td>NetCDF variable id of the parameter correlation. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_central</td><td>Central differencing is being used. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6b0bf1537519a547895781151859f3a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6b0bf1537519a547895781151859f3a6">&#9670;&nbsp;</a></span>param_send_delta()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_send_delta </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sends the delta used. </p>
-<p>Sends the value of delta used in the child process to the parent process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the reconstruction parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI intra_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a34a6dd1a05a79379169024dd7b51f725"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a34a6dd1a05a79379169024dd7b51f725">&#9670;&nbsp;</a></span>param_set_lock_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_set_lock_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the locking parameter value. </p>
-<p>Sets the value of a locking parameter. These parameters are locked to a linear combination of other set parameters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4f0815c66516006aa28a94e06b322d05"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4f0815c66516006aa28a94e06b322d05">&#9670;&nbsp;</a></span>param_set_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_set_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the parameter value. </p>
-<p>Sets the value of a reconstruction parameter. If the parameter is outside one of the bounding parameters, the value is clamped to the bounding value. The resulting bounded parameter value is set by ethier the <a class="el" href="namespacemodel.html">model</a> or the <a class="el" href="namespaceequilibrium.html">equilibrium</a>.</p>
-<p>If central differencing is used, both the upper and lower bounds must be checked. In this case both the upper and lower bounds need to be with in half the vrnc values. This ensures there is enough room to increment and decrement the values. If the bounds are so narrow such that the set value plus/minus half the vrnc is out of range of both bounds, then split the difference.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value to set the parameter to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_central</td><td>Central differencing is being used. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a58a43e136623f6eb084ad9672124eeda"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a58a43e136623f6eb084ad9672124eeda">&#9670;&nbsp;</a></span>param_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sync the parameter value from a child to the parent. </p>
-<p>Syncs the value of delta from a child process to the parent. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the reconstruction parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI intra_comm handle. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_central</td><td>Central differencing is being used. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a40a14269e648de4cb9b2cbe4e1a3542e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a40a14269e648de4cb9b2cbe4e1a3542e">&#9670;&nbsp;</a></span>param_sync_delta()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_sync_delta </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sync the delta used. </p>
-<p>Syncs the value of delta from the parent process to the child. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI recon_comm handle. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aca97eb081da6b2eb398caecac155a492"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aca97eb081da6b2eb398caecac155a492">&#9670;&nbsp;</a></span>param_sync_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_sync_value </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_central</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize the param value to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>A MPI intra_comm handle. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_central</td><td>Central differencing is being used. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac18b6e97dbb78fba12fc66b94e001655"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac18b6e97dbb78fba12fc66b94e001655">&#9670;&nbsp;</a></span>param_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes out a parameter to an output file. </p>
-<p>Parameter information is formated as the index, name, index 1, index2, value, sigma, vrnc, upper and lower range types, values, and range indices.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>The index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>Eventually parameter range informarion will be added as well. </dd></dl>
-
-</div>
-</div>
-<a id="ab8812aa6b828e6439b8079a5619d6c55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab8812aa6b828e6439b8079a5619d6c55">&#9670;&nbsp;</a></span>param_write_correlation()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_correlation </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes out a parameter covariance matrix row. </p>
-<p>Each parameter contains the row for it's covariance matrix. This write it out formatted as the name of the parameter up to 12 characters. This followed by each value spearated by 2 spaces and a 12 character number.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad934796db46bae3b80895d61c688f9f0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad934796db46bae3b80895d61c688f9f0">&#9670;&nbsp;</a></span>param_write_header()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_header </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes out parameter header information to an output file. </p>
-<p>Parameter information is formated as the index, name, index 1, index2, value, sigma, vrnc, upper and lower range types, values, and range indices. This is implmented as a static method and does not require a parameter instance. This should only be called once to produce a single header.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af5cfe9e4aed01f4358cf7bc6a471cc55"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af5cfe9e4aed01f4358cf7bc6a471cc55">&#9670;&nbsp;</a></span>param_write_header_short()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_header_short </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes out parameter header information to an output file. </p>
-<p>Parameter information is formated as the index, name, index 1, index2, value and sigma. This is implmented as a static method and does not require a parameter instance. This should only be called once to produce a single header.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>A input/output representing the file to write to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a914df41c608427e1257503dd347255fb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a914df41c608427e1257503dd347255fb">&#9670;&nbsp;</a></span>param_write_short()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_short </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes out a parameter to an output file. </p>
-<p>Parameter information is formated as the index, name, index 1, index2, value and sigma.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit representing the file to write to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>The index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>A <a class="el" href="namespacemodel.html">model</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2a907c3cded3e40bd23ee7577219ab75"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2a907c3cded3e40bd23ee7577219ab75">&#9670;&nbsp;</a></span>param_write_step_data_1()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_step_data_1 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_value_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_sigma_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_corr_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_sem_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the parameter data for a step to the result netcdf file. </p>
-<p>Writes out the parameter value, sigma and signal effectiveness matrix to the result file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">a_model</td><td>The equilibrium model. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>A NetCDF id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>The surrent reconstruction step. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>A index of a parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_value_id</td><td>NetCDF variable id of the parameter value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_sigma_id</td><td>NetCDF variable id of the parameter sigma. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_corr_id</td><td>NetCDF variable id of the parameter correlation. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacev3fit__context.html" title="Defines a v3fit_context_class object to contain all the memory for running v3fit. Contains methods to...">v3fit_context</a> </dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_sem_id</td><td>NetCDF variable id of the parameter signal effectiveness. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section note"><dt>Note</dt><dd>This assumes that the parameter sigma has already been calculated. Name and index information is written when the result file is first created by <a class="el" href="namespacev3fit__context.html#ae603bd5c6255bc5ac0c713645184a2ba">v3fit_context::v3fit_context_write_step_data</a>. </dd></dl>
-
-</div>
-</div>
-<a id="a3c277740e1c647f20b17e48cadf658b9"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3c277740e1c647f20b17e48cadf658b9">&#9670;&nbsp;</a></span>param_write_step_data_2()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3fit_params::param_write_step_data_2 </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__params_1_1param__class.html">param_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structmodel_1_1model__class.html">model_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>a_model</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>param_value_id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
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-<p>Write out the parameter data for a step to the result netcdf file. </p>
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-<p>Defines a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object to contain all the memory for running v3rfun.  
-<a href="namespacev3rfun__context.html#details">More...</a></p>
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-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a v3rfun context. This contains all memory needed to operate v3rfun.  <a href="structv3rfun__context_1_1v3rfun__context__class.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:a074343447ea2edf0cf2c83aec5638661"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html#a074343447ea2edf0cf2c83aec5638661">v3rfun_context_construct</a> (filename)</td></tr>
-<tr class="memdesc:a074343447ea2edf0cf2c83aec5638661"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object.  <a href="namespacev3rfun__context.html#a074343447ea2edf0cf2c83aec5638661">More...</a><br /></td></tr>
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-<tr class="memdesc:a3387d554df545c671c05fd9de2d3e18f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct and initialize the field coil objects.  <a href="namespacev3rfun__context.html#a3387d554df545c671c05fd9de2d3e18f">More...</a><br /></td></tr>
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-<tr class="memdesc:a634e3b89637eae47ed2a32b9b92d6a19"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a magnetic coil response function.  <a href="namespacev3rfun__context.html#a634e3b89637eae47ed2a32b9b92d6a19">More...</a><br /></td></tr>
-<tr class="separator:a634e3b89637eae47ed2a32b9b92d6a19"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a1f686f8e1bda13de9929196610122b3b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a point probe response.  <a href="namespacev3rfun__context.html#a1f686f8e1bda13de9929196610122b3b">More...</a><br /></td></tr>
-<tr class="separator:a1f686f8e1bda13de9929196610122b3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html#afcdfcb1b978cb3580751e317073f1094">code_name</a> = 'V3RFUN'</td></tr>
-<tr class="memdesc:afcdfcb1b978cb3580751e317073f1094"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of this code. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object to contain all the memory for running v3rfun. </p>
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-<h2 class="memtitle"><span class="permalink"><a href="#a074343447ea2edf0cf2c83aec5638661">&#9670;&nbsp;</a></span>v3rfun_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>) function, pointer v3rfun_context::v3rfun_context_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
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-
-<p>Construct a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object.</p>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a3387d554df545c671c05fd9de2d3e18f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3387d554df545c671c05fd9de2d3e18f">&#9670;&nbsp;</a></span>v3rfun_context_construct_field_coils()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_context::v3rfun_context_construct_field_coils </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct and initialize the field coil objects. </p>
-<p>Allocates memory and the field coil objects then apply the rotations and shits as defined in the namelist inout file.</p>
-<p>@params[in] this An instance of a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>. </p>
-
-</div>
-</div>
-<a id="a962cecd3372971387cdd6d07910a7965"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a962cecd3372971387cdd6d07910a7965">&#9670;&nbsp;</a></span>v3rfun_context_construct_responce_grids()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_context::v3rfun_context_construct_responce_grids </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Allocate and initialize the response function arrays. </p>
-<p>Allocates memory and for the plasma and conducting shell response function arrays. This does not compute the actual response yet.</p>
-<p>@params[in] this An instance of a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>. </p>
-
-</div>
-</div>
-<a id="a8615f6e374740ffdbb56e523b2663245"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8615f6e374740ffdbb56e523b2663245">&#9670;&nbsp;</a></span>v3rfun_context_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_context::v3rfun_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object. This all the v3rfun constructed objects are destroyed here.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a634e3b89637eae47ed2a32b9b92d6a19"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a634e3b89637eae47ed2a32b9b92d6a19">&#9670;&nbsp;</a></span>v3rfun_context_write_mrf()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_context::v3rfun_context_write_mrf </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot_coil</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>d_coil</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id_num</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out a magnetic coil response function. </p>
-<p>Computes the magnetic response function for each a coil and writes the results to an mdsig file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">d_coil</td><td>A <a class="el" href="structdiagnostic__dot_1_1diagnostic__dot__coil.html">diagnostic_dot::diagnostic_dot_coil</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id_num</td><td>Diagnostic coil number. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1f686f8e1bda13de9929196610122b3b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1f686f8e1bda13de9929196610122b3b">&#9670;&nbsp;</a></span>v3rfun_context_write_point()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_context::v3rfun_context_write_point </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a>), intent(inout)&#160;</td>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
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-<p>This file contains all the variables and maximum sizes of the inputs for a V3RFUN namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3RFUN task should be copied to a <a class="el" href="namespacev3rfun__context.html">v3rfun_context</a> object. All non-parameters are inputs to the namelist input file.  
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-<tr class="memitem:a4c82aee1344b1a29a1546a5f55334783"><td class="memItemLeft" align="right" valign="top"><a id="a4c82aee1344b1a29a1546a5f55334783"></a>
-real(rprec), dimension(nigroup, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#a4c82aee1344b1a29a1546a5f55334783">cg_shift_1</a> = 0.0</td></tr>
-<tr class="memdesc:a4c82aee1344b1a29a1546a5f55334783"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector to shift all the coils before rotation. <br /></td></tr>
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-real(rprec), dimension(nigroup, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#a39b6271151f09f127bb5a2f119fe128a">cg_shift_2</a> = 0.0</td></tr>
-<tr class="memdesc:a39b6271151f09f127bb5a2f119fe128a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector to shift all the coils after rotation. <br /></td></tr>
-<tr class="separator:a39b6271151f09f127bb5a2f119fe128a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(rprec), dimension(nigroup, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#abdc04d7ed82835ffccbc1713e8cb6412">cg_rot_xcent</a> = 0.0</td></tr>
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-real(rprec), dimension(nigroup)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#a12efedfa0e0967859ada4a522f2cc7c8">cg_rot_theta</a> = 0.0</td></tr>
-<tr class="memdesc:a12efedfa0e0967859ada4a522f2cc7c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spherical polar angle to specify axis of rotation. <br /></td></tr>
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-real(rprec), dimension(nigroup)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#aea77e45cae8e4f135db2540ceee1f286">cg_rot_phi</a> = 0.0</td></tr>
-<tr class="memdesc:aea77e45cae8e4f135db2540ceee1f286"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spherical azimuthal angle to specify axis of rotation. <br /></td></tr>
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-real(rprec), dimension(nigroup)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#a69498e547cb03a51474166cc8ebb4fc2">cg_rot_angle</a> = 0.0</td></tr>
-<tr class="memdesc:a69498e547cb03a51474166cc8ebb4fc2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Angle to rotate about axis of rotation. Left hand convention. Put left thumb along axis of rotation, fingers indicate direction of positive rotation. <br /></td></tr>
-<tr class="separator:a69498e547cb03a51474166cc8ebb4fc2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab352e8af69668db867eafcb665e74989"><td class="memItemLeft" align="right" valign="top">logical, dimension(nigroup)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html#ab352e8af69668db867eafcb665e74989">l_rot_coil_center</a> = .true.</td></tr>
-<tr class="memdesc:ab352e8af69668db867eafcb665e74989"><td class="mdescLeft">&#160;</td><td class="mdescRight">Controls the center of rotation.  <a href="namespacev3rfun__input.html#ab352e8af69668db867eafcb665e74989">More...</a><br /></td></tr>
-<tr class="separator:ab352e8af69668db867eafcb665e74989"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains all the variables and maximum sizes of the inputs for a V3RFUN namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3RFUN task should be copied to a <a class="el" href="namespacev3rfun__context.html">v3rfun_context</a> object. All non-parameters are inputs to the namelist input file. </p>
-<p><a class="el" href="v3rfun_namelist_sec.html">Namelist v3r_coils definition</a></p>
-<dl class="section note"><dt>Note</dt><dd>Some of the references are missing here. This is due to a bug in Doxygen when variable decalarations span multiple lines. </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="ac7f6ea66b2772ea98d6e9055bebb7bb8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac7f6ea66b2772ea98d6e9055bebb7bb8">&#9670;&nbsp;</a></span>v3rfun_input_read_namelist()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine v3rfun_input::v3rfun_input_read_namelist </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reads the namelist input file. </p>
-<p>Reads the namelist input file. V3RFUN currently requires no processing of the namelist input.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Variable Documentation</h2>
-<a id="ab352e8af69668db867eafcb665e74989"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab352e8af69668db867eafcb665e74989">&#9670;&nbsp;</a></span>l_rot_coil_center</h2>
-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">logical, dimension(nigroup) v3rfun_input::l_rot_coil_center = .true.</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Controls the center of rotation. </p>
-<ul>
-<li>True Use current-averaged center of coil-group for center of rotation.</li>
-<li>False Use position specified in cg_rot_xcent for center of rotation. </li>
-</ul>
-
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-<p>Defines the base class of the type <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>. This module contains all the code necessary to interface V3FIT with a vacuum equilibrium.  
-<a href="namespacevacuum__equilibrium.html#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacevacuum__equilibrium.html" title="Defines the base class of the type vacuum_class. This module contains all the code necessary to inter...">vacuum_equilibrium</a>.  <a href="structvacuum__equilibrium_1_1vacuum__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a2d815c586d1d0ca800713be1a81a36f6"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a2d815c586d1d0ca800713be1a81a36f6">vacuum_construct</a> (file_name, iou, force_solve)</td></tr>
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-<tr class="separator:a2d815c586d1d0ca800713be1a81a36f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a158feaf1eb7f3be723a04e3499e6abeb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aba6f072e24c78c4c374bf5f037b4f9d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacevacuum__equilibrium.html#aba6f072e24c78c4c374bf5f037b4f9d6">More...</a><br /></td></tr>
-<tr class="separator:aba6f072e24c78c4c374bf5f037b4f9d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a24c3721f5e87dcde8c0f1b3c41226f59"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a8cb64503465b60227dc26f404b446d46"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a7fcbc5750ae0dc10b13291b13254e1c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction vacuum parameter.  <a href="namespacevacuum__equilibrium.html#a7fcbc5750ae0dc10b13291b13254e1c3">More...</a><br /></td></tr>
-<tr class="separator:a7fcbc5750ae0dc10b13291b13254e1c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ace1fd5735aff18c72ca2191af66281d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a4df6661459fbdfb21e332948f2b0a81e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a7e45b41e3462a940c9ea282ade2dcd0e">vacuum_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacevacuum__equilibrium.html#a7e45b41e3462a940c9ea282ade2dcd0e">More...</a><br /></td></tr>
-<tr class="separator:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a821a3f5f8b5f126a6453dfa1964d553a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a821a3f5f8b5f126a6453dfa1964d553a">vacuum_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
-<tr class="memdesc:a821a3f5f8b5f126a6453dfa1964d553a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external current.  <a href="namespacevacuum__equilibrium.html#a821a3f5f8b5f126a6453dfa1964d553a">More...</a><br /></td></tr>
-<tr class="separator:a821a3f5f8b5f126a6453dfa1964d553a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a892cad74fa3d7f378ef0ef4c21b9223f"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a892cad74fa3d7f378ef0ef4c21b9223f">vacuum_is_1d_array</a> (this, id)</td></tr>
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-<tr class="separator:a892cad74fa3d7f378ef0ef4c21b9223f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a13814d249d92208518d01f487e48b27f"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a13814d249d92208518d01f487e48b27f">vacuum_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:a13814d249d92208518d01f487e48b27f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespacevacuum__equilibrium.html#a13814d249d92208518d01f487e48b27f">More...</a><br /></td></tr>
-<tr class="separator:a13814d249d92208518d01f487e48b27f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:affa6def614997ef004a5a2f6848ba546"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#affa6def614997ef004a5a2f6848ba546">vacuum_write</a> (this, iou)</td></tr>
-<tr class="memdesc:affa6def614997ef004a5a2f6848ba546"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespacevacuum__equilibrium.html#affa6def614997ef004a5a2f6848ba546">More...</a><br /></td></tr>
-<tr class="separator:affa6def614997ef004a5a2f6848ba546"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a743d73407169f82b9931d858bb066d0a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a743d73407169f82b9931d858bb066d0a">vacuum_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a743d73407169f82b9931d858bb066d0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the current valid input.  <a href="namespacevacuum__equilibrium.html#a743d73407169f82b9931d858bb066d0a">More...</a><br /></td></tr>
-<tr class="separator:a743d73407169f82b9931d858bb066d0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:adf9bfe2c3fa0ba90c92183a5f9fc555d"><td class="memItemLeft" align="right" valign="top"><a id="adf9bfe2c3fa0ba90c92183a5f9fc555d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#adf9bfe2c3fa0ba90c92183a5f9fc555d">vacuum_extcur_id</a> = 14</td></tr>
-<tr class="memdesc:adf9bfe2c3fa0ba90c92183a5f9fc555d"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of external currents. <br /></td></tr>
-<tr class="separator:adf9bfe2c3fa0ba90c92183a5f9fc555d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>. This module contains all the code necessary to interface V3FIT with a vacuum equilibrium. </p>
-<dl class="section user"><dt>Super Class:</dt><dd><a class="el" href="namespaceequilibrium.html">equilibrium</a> </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a2d815c586d1d0ca800713be1a81a36f6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2d815c586d1d0ca800713be1a81a36f6">&#9670;&nbsp;</a></span>vacuum_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>) function, pointer vacuum_equilibrium::vacuum_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> object. </p><dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_name</td><td>Filename of the vacuum namelist input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit to log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a158feaf1eb7f3be723a04e3499e6abeb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a158feaf1eb7f3be723a04e3499e6abeb">&#9670;&nbsp;</a></span>vacuum_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_equilibrium::vacuum_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4df6661459fbdfb21e332948f2b0a81e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4df6661459fbdfb21e332948f2b0a81e">&#9670;&nbsp;</a></span>vacuum_get_b_vec()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) vacuum_equilibrium::vacuum_get_b_vec </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the magnetic field vector at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_B_vec.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the magnetic field vector at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cyl</td><td>Flag that specifies if the bfield should be returned in cartesian or cylindical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The magnetic field vector at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a821a3f5f8b5f126a6453dfa1964d553a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a821a3f5f8b5f126a6453dfa1964d553a">&#9670;&nbsp;</a></span>vacuum_get_ext_currents()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer vacuum_equilibrium::vacuum_get_ext_currents </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_currents</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>scale_currents</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external current. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">equilibrium::equilibrium_get_ext_currents</a>. The array memory containing the external currents is owned by the <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>. Return a pointer to it.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_currents</td><td>Forces the number of currents to return if greater than zero. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">scale_currents</td><td>Informs the caller that currents need to be scaled. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external currents. </dd></dl>
-
-</div>
-</div>
-<a id="a7e45b41e3462a940c9ea282ade2dcd0e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7e45b41e3462a940c9ea282ade2dcd0e">&#9670;&nbsp;</a></span>vacuum_get_int_b_dphi()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vacuum_equilibrium::vacuum_get_int_b_dphi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the loop integrated magnetic field at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_Int_B_dphi. In this function, r and theta are spherical coordinates. The r is transformed into a cylindical radius at some z position. The magnetic field is integrated about a loop at that r-z position. This computes Int[B*dl]</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to integrate about. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>Theta angle to integrate about. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The loop integrated magnetic field at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a8cb64503465b60227dc26f404b446d46"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8cb64503465b60227dc26f404b446d46">&#9670;&nbsp;</a></span>vacuum_get_param_id()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vacuum_equilibrium::vacuum_get_param_id </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the id for a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium::equilibrium_get_param_id</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of a reconstruction parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The id for a reconstruction parameter. </dd></dl>
-
-</div>
-</div>
-<a id="ace1fd5735aff18c72ca2191af66281d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ace1fd5735aff18c72ca2191af66281d8">&#9670;&nbsp;</a></span>vacuum_get_param_name()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character(len=data_name_length) function vacuum_equilibrium::vacuum_get_param_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the name of a reconstruction vacuum parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium::equilibrium_get_param_name</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a7fcbc5750ae0dc10b13291b13254e1c3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7fcbc5750ae0dc10b13291b13254e1c3">&#9670;&nbsp;</a></span>vacuum_get_param_value()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vacuum_equilibrium::vacuum_get_param_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of a reconstruction vacuum parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium::equilibrium_get_param_value</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a24c3721f5e87dcde8c0f1b3c41226f59"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a24c3721f5e87dcde8c0f1b3c41226f59">&#9670;&nbsp;</a></span>vacuum_get_type()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function vacuum_equilibrium::vacuum_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the equilibrium type. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the signal type. </dd></dl>
-
-</div>
-</div>
-<a id="a892cad74fa3d7f378ef0ef4c21b9223f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a892cad74fa3d7f378ef0ef4c21b9223f">&#9670;&nbsp;</a></span>vacuum_is_1d_array()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vacuum_equilibrium::vacuum_is_1d_array </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a 1d array. </p>
-<p>This method overrides equilibrium::equilibrium_is_1d_array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a 1d array and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a13814d249d92208518d01f487e48b27f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a13814d249d92208518d01f487e48b27f">&#9670;&nbsp;</a></span>vacuum_is_recon_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vacuum_equilibrium::vacuum_is_recon_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium::equilibrium_is_recon_param</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a reconstruction parameter and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="aba6f072e24c78c4c374bf5f037b4f9d6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aba6f072e24c78c4c374bf5f037b4f9d6">&#9670;&nbsp;</a></span>vacuum_set_param()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_equilibrium::vacuum_set_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the value of a reconstruction equilibrium parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium::equilibrium_set_param</a>. This function always returns false because a vacuum equilibrium never needs to be reconverged.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A vaccum_class instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="affa6def614997ef004a5a2f6848ba546"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#affa6def614997ef004a5a2f6848ba546">&#9670;&nbsp;</a></span>vacuum_write()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_equilibrium::vacuum_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the equilibrium to an output file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium::equilibrium_write</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a743d73407169f82b9931d858bb066d0a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a743d73407169f82b9931d858bb066d0a">&#9670;&nbsp;</a></span>vacuum_write_input()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_equilibrium::vacuum_write_input </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the current valid input. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium::equilibrium_write_input</a>. The boundary and other fixed parameters do not get updated as the reconstruction progresses. Need to update them manually if in free boundary mode.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step number to append to input filename. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<div class="header">
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">vacuum_input Module Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This file contains all the variables and maximum sizes of the inputs for a vacuum namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a vacuum equilibrium should be copied to a <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a> object. All non-parameters are inputs to the namelist input file.  
-<a href="namespacevacuum__input.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:aaea39991ef35c99c656ea056500a7b8e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#aaea39991ef35c99c656ea056500a7b8e">vacuum_input_read_namelist</a> (namelist_file)</td></tr>
-<tr class="memdesc:aaea39991ef35c99c656ea056500a7b8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reads the namelist input file.  <a href="namespacevacuum__input.html#aaea39991ef35c99c656ea056500a7b8e">More...</a><br /></td></tr>
-<tr class="separator:aaea39991ef35c99c656ea056500a7b8e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa1c3d1a2a24a973b9c566503ac091359"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#aa1c3d1a2a24a973b9c566503ac091359">vacuum_input_write_namelist</a> (namelist_file)</td></tr>
-<tr class="memdesc:aa1c3d1a2a24a973b9c566503ac091359"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes the namelist input file.  <a href="namespacevacuum__input.html#aa1c3d1a2a24a973b9c566503ac091359">More...</a><br /></td></tr>
-<tr class="separator:aa1c3d1a2a24a973b9c566503ac091359"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a> = 1000</td></tr>
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-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a2bb9564b99591f62f4d9f59a81f806e8">coils_dot_file</a> = ''</td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#aa4f35a8df2a0a72ce5166e663408089d">n_extcur</a> = 0</td></tr>
-<tr class="memdesc:aa4f35a8df2a0a72ce5166e663408089d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of external currents. <br /></td></tr>
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-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a63364fb21724c5c5b6a62c787b455e12">extcur</a> = 0.0</td></tr>
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-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a8933cc0c143a80c1a48186d5dd9977b8">cg_shift_1</a> = 0.0</td></tr>
-<tr class="memdesc:a8933cc0c143a80c1a48186d5dd9977b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector to shift all the coils. (Before rotation) <br /></td></tr>
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-<tr class="memitem:a9d65334d0e448272bc5a898094be658e"><td class="memItemLeft" align="right" valign="top"><a id="a9d65334d0e448272bc5a898094be658e"></a>
-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a9d65334d0e448272bc5a898094be658e">cg_rot_theta</a> = 0.0</td></tr>
-<tr class="memdesc:a9d65334d0e448272bc5a898094be658e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spherical polar angle to specify axis of rotation. <br /></td></tr>
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-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a32022f55c4b87973b3869742944ef82e">cg_rot_angle</a> = 0.0</td></tr>
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-<tr class="separator:a32022f55c4b87973b3869742944ef82e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#acec6424ec2c1c37f20c327799524cb5f">cg_rot_xcent</a> = 0.0</td></tr>
-<tr class="memdesc:acec6424ec2c1c37f20c327799524cb5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Position of center of rotation. <br /></td></tr>
-<tr class="separator:acec6424ec2c1c37f20c327799524cb5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a6c2b060a86eefcadf7256ffc7f33af12"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(rprec), dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>, 3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__input.html#a11564e7e13c1f2bdca1f1657bab8079f">cg_shift_2</a> = 0.0</td></tr>
-<tr class="memdesc:a11564e7e13c1f2bdca1f1657bab8079f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector to shift all the coils. (After rotation) <br /></td></tr>
-<tr class="separator:a11564e7e13c1f2bdca1f1657bab8079f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>This file contains all the variables and maximum sizes of the inputs for a vacuum namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a vacuum equilibrium should be copied to a <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a> object. All non-parameters are inputs to the namelist input file. </p>
-<p><a class="el" href="vacuum_namelist_sec.html">Namelist vacuum_main_nli definition</a> </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aaea39991ef35c99c656ea056500a7b8e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aaea39991ef35c99c656ea056500a7b8e">&#9670;&nbsp;</a></span>vacuum_input_read_namelist()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_input::vacuum_input_read_namelist </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reads the namelist input file. </p>
-<p>Reads the namelist input file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa1c3d1a2a24a973b9c566503ac091359"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa1c3d1a2a24a973b9c566503ac091359">&#9670;&nbsp;</a></span>vacuum_input_write_namelist()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vacuum_input::vacuum_input_write_namelist </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>namelist_file</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Writes the namelist input file. </p>
-<p>Writes the namelist input file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">namelist_file</td><td>The file name of the namelist input file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<h2 class="groupheader">Variable Documentation</h2>
-<a id="a6c2b060a86eefcadf7256ffc7f33af12"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6c2b060a86eefcadf7256ffc7f33af12">&#9670;&nbsp;</a></span>l_rot_coil_center</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">logical, dimension(<a class="el" href="namespacevacuum__input.html#a3838accbbdfa33fab8df61da8504ce25">vacuum_max_currents</a>) vacuum_input::l_rot_coil_center = .false.</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-<ul>
-<li>True - use current-averaged center of coil-group for center of rotation.<ul>
-<li>False - use position specified in cg_rot_xcent for center of rotation. </li>
-</ul>
-</li>
-</ul>
-
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-<a href="#nested-classes">Data Types</a> &#124;
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-
-<p>Defines the base class of the type <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>. This contains the state variables needed by VMEC.  
-<a href="namespacevmec__context.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a>. This contains a copy of every variable that is needed to define the VMEC state.  <a href="structvmec__context_1_1vmec__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:af56356294cab64c01888b7ebdcd707a4"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#af56356294cab64c01888b7ebdcd707a4">vmec_context_construct</a> ()</td></tr>
-<tr class="memdesc:af56356294cab64c01888b7ebdcd707a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object.  <a href="namespacevmec__context.html#af56356294cab64c01888b7ebdcd707a4">More...</a><br /></td></tr>
-<tr class="separator:af56356294cab64c01888b7ebdcd707a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afb80bc5e740637348f0725f5edc5fc6d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#afb80bc5e740637348f0725f5edc5fc6d">vmec_context_destruct</a> (this)</td></tr>
-<tr class="memdesc:afb80bc5e740637348f0725f5edc5fc6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object.  <a href="namespacevmec__context.html#afb80bc5e740637348f0725f5edc5fc6d">More...</a><br /></td></tr>
-<tr class="separator:afb80bc5e740637348f0725f5edc5fc6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16ee3ba2338ee91a8d0d4490531dfe59"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#a16ee3ba2338ee91a8d0d4490531dfe59">vmec_context_set_context</a> (this)</td></tr>
-<tr class="memdesc:a16ee3ba2338ee91a8d0d4490531dfe59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the current context to the <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object.  <a href="namespacevmec__context.html#a16ee3ba2338ee91a8d0d4490531dfe59">More...</a><br /></td></tr>
-<tr class="separator:a16ee3ba2338ee91a8d0d4490531dfe59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7592273358ba06806ff2db973b9df011"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#a7592273358ba06806ff2db973b9df011">vmec_context_get_context</a> (this)</td></tr>
-<tr class="memdesc:a7592273358ba06806ff2db973b9df011"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the current context from the VMEC internal state.  <a href="namespacevmec__context.html#a7592273358ba06806ff2db973b9df011">More...</a><br /></td></tr>
-<tr class="separator:a7592273358ba06806ff2db973b9df011"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb9e1bb9ca425109347a6067fc2023d8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#acb9e1bb9ca425109347a6067fc2023d8">vmec_context_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:acb9e1bb9ca425109347a6067fc2023d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a> to children.  <a href="namespacevmec__context.html#acb9e1bb9ca425109347a6067fc2023d8">More...</a><br /></td></tr>
-<tr class="separator:acb9e1bb9ca425109347a6067fc2023d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3de32c83f127d5f20bf437a4d1268f7f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__context.html#a3de32c83f127d5f20bf437a4d1268f7f">vmec_context_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a3de32c83f127d5f20bf437a4d1268f7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a> to the parent.  <a href="namespacevmec__context.html#a3de32c83f127d5f20bf437a4d1268f7f">More...</a><br /></td></tr>
-<tr class="separator:a3de32c83f127d5f20bf437a4d1268f7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>. This contains the state variables needed by VMEC. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="af56356294cab64c01888b7ebdcd707a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af56356294cab64c01888b7ebdcd707a4">&#9670;&nbsp;</a></span>vmec_context_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>) function, pointer vmec_context::vmec_context_construct</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a new <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object.</p>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="afb80bc5e740637348f0725f5edc5fc6d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afb80bc5e740637348f0725f5edc5fc6d">&#9670;&nbsp;</a></span>vmec_context_destruct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_context::vmec_context_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Deconstruct a <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7592273358ba06806ff2db973b9df011"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7592273358ba06806ff2db973b9df011">&#9670;&nbsp;</a></span>vmec_context_get_context()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_context::vmec_context_get_context </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the current context from the VMEC internal state. </p>
-<p>Copy the internal vmec state to the context object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a16ee3ba2338ee91a8d0d4490531dfe59"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a16ee3ba2338ee91a8d0d4490531dfe59">&#9670;&nbsp;</a></span>vmec_context_set_context()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_context::vmec_context_set_context </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets the current context to the <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> object. </p>
-<p>This sets this context to be the VMEC state.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3de32c83f127d5f20bf437a4d1268f7f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3de32c83f127d5f20bf437a4d1268f7f">&#9670;&nbsp;</a></span>vmec_context_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_context::vmec_context_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a> to the parent. </p>
-<p>Syncs data between a child and the parent process. If MPI support is not compiled in this subroutine reduces to a no op. This syncs the VMEC variables directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Reconstruction rank to sync. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acb9e1bb9ca425109347a6067fc2023d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb9e1bb9ca425109347a6067fc2023d8">&#9670;&nbsp;</a></span>vmec_context_sync_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_context::vmec_context_sync_state </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize the <a class="el" href="namespacevmec__context.html" title="Defines the base class of the type vmec_context_class. This contains the state variables needed by VM...">vmec_context</a> to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op. This syncs the VMEC variables directly.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__context_1_1vmec__context__class.html">vmec_context_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>. This module contains all the code necessary to interface V3FIT with VMEC.  
-<a href="namespacevmec__equilibrium.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Object to cache data needed to compute magnetic signals.  <a href="structvmec__equilibrium_1_1vmec__magnetic__cache.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a <a class="el" href="namespacevmec__equilibrium.html" title="Defines the base class of the type vmec_class. This module contains all the code necessary to interfa...">vmec_equilibrium</a>.  <a href="structvmec__equilibrium_1_1vmec__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward declare the interface for <a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a>.  <a href="interfacevmec__equilibrium_1_1runvmec.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ab2aedb4b919e973a902163d8da0a7109"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab2aedb4b919e973a902163d8da0a7109">vmec_construct_sub</a> (this, file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td></tr>
-<tr class="memdesc:ab2aedb4b919e973a902163d8da0a7109"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#ab2aedb4b919e973a902163d8da0a7109">More...</a><br /></td></tr>
-<tr class="separator:ab2aedb4b919e973a902163d8da0a7109"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3698795faf0024a046d0c89a2ee84e4d"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3698795faf0024a046d0c89a2ee84e4d">vmec_construct</a> (file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td></tr>
-<tr class="memdesc:a3698795faf0024a046d0c89a2ee84e4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#a3698795faf0024a046d0c89a2ee84e4d">More...</a><br /></td></tr>
-<tr class="separator:a3698795faf0024a046d0c89a2ee84e4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aac74c89608f1ab1ba7efa6a6a80bd9d5">vmec_destruct</a> (this)</td></tr>
-<tr class="memdesc:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#aac74c89608f1ab1ba7efa6a6a80bd9d5">More...</a><br /></td></tr>
-<tr class="separator:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08a558e21fb005492c9c4102dfa80ebc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc">vmec_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:a08a558e21fb005492c9c4102dfa80ebc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc">More...</a><br /></td></tr>
-<tr class="separator:a08a558e21fb005492c9c4102dfa80ebc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a> (this, response_object, state_flags)</td></tr>
-<tr class="memdesc:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache for plasma resonce.  <a href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">More...</a><br /></td></tr>
-<tr class="separator:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a355d774feafc69fda582d6fe0269b828"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a355d774feafc69fda582d6fe0269b828">vmec_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:a355d774feafc69fda582d6fe0269b828"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacevmec__equilibrium.html#a355d774feafc69fda582d6fe0269b828">More...</a><br /></td></tr>
-<tr class="separator:a355d774feafc69fda582d6fe0269b828"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08c1386909dadbb57c3b8988a8c7206e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e">vmec_set_magnetic_cache_calc</a> (this)</td></tr>
-<tr class="memdesc:a08c1386909dadbb57c3b8988a8c7206e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e">More...</a><br /></td></tr>
-<tr class="separator:a08c1386909dadbb57c3b8988a8c7206e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac1c8619aa312f52d85ac59c1ee0befe8">vmec_set_namelist</a> (this)</td></tr>
-<tr class="memdesc:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets namelist variables from the solved VMEC equilibrium.  <a href="namespacevmec__equilibrium.html#ac1c8619aa312f52d85ac59c1ee0befe8">More...</a><br /></td></tr>
-<tr class="separator:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65aae6ba7b821665a846416e2357bbde"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde">vmec_get_type</a> (this)</td></tr>
-<tr class="memdesc:a65aae6ba7b821665a846416e2357bbde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the equilibrium type.  <a href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde">More...</a><br /></td></tr>
-<tr class="separator:a65aae6ba7b821665a846416e2357bbde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad99dfb81ec8b7b93feb015307f54da24"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24">vmec_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:ad99dfb81ec8b7b93feb015307f54da24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24">More...</a><br /></td></tr>
-<tr class="separator:ad99dfb81ec8b7b93feb015307f54da24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73">vmec_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction VMEC parameter.  <a href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73">More...</a><br /></td></tr>
-<tr class="separator:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332">vmec_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the name of a reconstruction VMEC parameter.  <a href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332">More...</a><br /></td></tr>
-<tr class="separator:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b025d92cb76b4918552f70f6f3ae557"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557">vmec_get_gp_ne_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a3b025d92cb76b4918552f70f6f3ae557"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557">More...</a><br /></td></tr>
-<tr class="separator:a3b025d92cb76b4918552f70f6f3ae557"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc">vmec_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density profile af array.  <a href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc">More...</a><br /></td></tr>
-<tr class="separator:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae78a669c86f61b357cee909d7720cd02"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02">vmec_get_gp_ne_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:ae78a669c86f61b357cee909d7720cd02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02">More...</a><br /></td></tr>
-<tr class="separator:ae78a669c86f61b357cee909d7720cd02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c">vmec_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c">More...</a><br /></td></tr>
-<tr class="separator:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4">vmec_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4">More...</a><br /></td></tr>
-<tr class="separator:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5162748610407fdba4edfeede1c56400"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5162748610407fdba4edfeede1c56400">vmec_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a5162748610407fdba4edfeede1c56400"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacevmec__equilibrium.html#a5162748610407fdba4edfeede1c56400">More...</a><br /></td></tr>
-<tr class="separator:a5162748610407fdba4edfeede1c56400"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38dff7757255c7f94de65a1b177b7111"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a38dff7757255c7f94de65a1b177b7111">vmec_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a38dff7757255c7f94de65a1b177b7111"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a s position.  <a href="namespacevmec__equilibrium.html#a38dff7757255c7f94de65a1b177b7111">More...</a><br /></td></tr>
-<tr class="separator:a38dff7757255c7f94de65a1b177b7111"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d1e2a51f8c02300257ddc1c711df165"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165">vmec_get_gp_te_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a5d1e2a51f8c02300257ddc1c711df165"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165">More...</a><br /></td></tr>
-<tr class="separator:a5d1e2a51f8c02300257ddc1c711df165"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a81c07bed241bb1202b5f23aeb808713b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">vmec_get_te_af</a> (this)</td></tr>
-<tr class="memdesc:a81c07bed241bb1202b5f23aeb808713b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature profile af array.  <a href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">More...</a><br /></td></tr>
-<tr class="separator:a81c07bed241bb1202b5f23aeb808713b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a520d0f5ef178c883ed68f7e44b38c164"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164">vmec_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a520d0f5ef178c883ed68f7e44b38c164"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164">More...</a><br /></td></tr>
-<tr class="separator:a520d0f5ef178c883ed68f7e44b38c164"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2886974d81d88cb700bafeb8f3273fe8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8">vmec_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a2886974d81d88cb700bafeb8f3273fe8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8">More...</a><br /></td></tr>
-<tr class="separator:a2886974d81d88cb700bafeb8f3273fe8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeab774cc5fb4313d377d9f75cf1268db"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db">vmec_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:aeab774cc5fb4313d377d9f75cf1268db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db">More...</a><br /></td></tr>
-<tr class="separator:aeab774cc5fb4313d377d9f75cf1268db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a380b877fbbdf96daa86ae594a58aa57b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a380b877fbbdf96daa86ae594a58aa57b">vmec_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a380b877fbbdf96daa86ae594a58aa57b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacevmec__equilibrium.html#a380b877fbbdf96daa86ae594a58aa57b">More...</a><br /></td></tr>
-<tr class="separator:a380b877fbbdf96daa86ae594a58aa57b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab4edfad818935e2d96e6a744df849a4b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab4edfad818935e2d96e6a744df849a4b">vmec_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:ab4edfad818935e2d96e6a744df849a4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a s position.  <a href="namespacevmec__equilibrium.html#ab4edfad818935e2d96e6a744df849a4b">More...</a><br /></td></tr>
-<tr class="separator:ab4edfad818935e2d96e6a744df849a4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af19abc6f123b38c9c8ed0897d8194e61"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61">vmec_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:af19abc6f123b38c9c8ed0897d8194e61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61">More...</a><br /></td></tr>
-<tr class="separator:af19abc6f123b38c9c8ed0897d8194e61"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1">vmec_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature profile af array.  <a href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1">More...</a><br /></td></tr>
-<tr class="separator:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26bde51d5aefffcfce4cae769b085f6e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e">vmec_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a26bde51d5aefffcfce4cae769b085f6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e">More...</a><br /></td></tr>
-<tr class="separator:a26bde51d5aefffcfce4cae769b085f6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb">vmec_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb">More...</a><br /></td></tr>
-<tr class="separator:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a544c0845bf4b62feaba66bb8d8676ff2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2">vmec_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a544c0845bf4b62feaba66bb8d8676ff2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2">More...</a><br /></td></tr>
-<tr class="separator:a544c0845bf4b62feaba66bb8d8676ff2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aefb1dc6ad97f59a8d75d60f2737f688c">vmec_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacevmec__equilibrium.html#aefb1dc6ad97f59a8d75d60f2737f688c">More...</a><br /></td></tr>
-<tr class="separator:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7e33bef6e48cc1fd769a35b2b4a27699">vmec_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a s position.  <a href="namespacevmec__equilibrium.html#a7e33bef6e48cc1fd769a35b2b4a27699">More...</a><br /></td></tr>
-<tr class="separator:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69d3909c224767679dcf0e5371d79649"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649">vmec_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:a69d3909c224767679dcf0e5371d79649"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emission gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649">More...</a><br /></td></tr>
-<tr class="separator:a69d3909c224767679dcf0e5371d79649"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7532757e09dfbc0ca78c3d163febc265"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265">vmec_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a7532757e09dfbc0ca78c3d163febc265"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity profile af array.  <a href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265">More...</a><br /></td></tr>
-<tr class="separator:a7532757e09dfbc0ca78c3d163febc265"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac2cc60f25eaca40b76f82f4208b1809e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac2cc60f25eaca40b76f82f4208b1809e">vmec_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:ac2cc60f25eaca40b76f82f4208b1809e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#ac2cc60f25eaca40b76f82f4208b1809e">More...</a><br /></td></tr>
-<tr class="separator:ac2cc60f25eaca40b76f82f4208b1809e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565">vmec_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565">More...</a><br /></td></tr>
-<tr class="separator:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1">vmec_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1">More...</a><br /></td></tr>
-<tr class="separator:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad00c4e2bf2224cf441531722a6e73681"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">vmec_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:ad00c4e2bf2224cf441531722a6e73681"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">More...</a><br /></td></tr>
-<tr class="separator:ad00c4e2bf2224cf441531722a6e73681"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aad5f316f17dd9811f1aa5a9ee49b3e8a">vmec_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a s position.  <a href="namespacevmec__equilibrium.html#aad5f316f17dd9811f1aa5a9ee49b3e8a">More...</a><br /></td></tr>
-<tr class="separator:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28da0b909345dd8940e046c432624f54"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a28da0b909345dd8940e046c432624f54">vmec_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:a28da0b909345dd8940e046c432624f54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespacevmec__equilibrium.html#a28da0b909345dd8940e046c432624f54">More...</a><br /></td></tr>
-<tr class="separator:a28da0b909345dd8940e046c432624f54"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7d6de6e41f3b42cbe5f9c720e9412abe">vmec_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a s position.  <a href="namespacevmec__equilibrium.html#a7d6de6e41f3b42cbe5f9c720e9412abe">More...</a><br /></td></tr>
-<tr class="separator:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a77d739f769354141eecec5844b37263a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a77d739f769354141eecec5844b37263a">vmec_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a77d739f769354141eecec5844b37263a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespacevmec__equilibrium.html#a77d739f769354141eecec5844b37263a">More...</a><br /></td></tr>
-<tr class="separator:a77d739f769354141eecec5844b37263a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa571272262c2461ad439aacedb13b505"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa571272262c2461ad439aacedb13b505">vmec_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:aa571272262c2461ad439aacedb13b505"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacevmec__equilibrium.html#aa571272262c2461ad439aacedb13b505">More...</a><br /></td></tr>
-<tr class="separator:aa571272262c2461ad439aacedb13b505"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab7b4ef3ae9bb37c5dbdac077d64a7f36">vmec_get_suv</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC suv position.  <a href="namespacevmec__equilibrium.html#ab7b4ef3ae9bb37c5dbdac077d64a7f36">More...</a><br /></td></tr>
-<tr class="separator:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab972cec76da4119a8904190c6ef1c625"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab972cec76da4119a8904190c6ef1c625">vmec_get_s</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ab972cec76da4119a8904190c6ef1c625"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC s value at position.  <a href="namespacevmec__equilibrium.html#ab972cec76da4119a8904190c6ef1c625">More...</a><br /></td></tr>
-<tr class="separator:ab972cec76da4119a8904190c6ef1c625"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85a45be457fd2cd01d9161590731dcc1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a85a45be457fd2cd01d9161590731dcc1">vmec_get_flux</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a85a45be457fd2cd01d9161590731dcc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC normalized flux value at position.  <a href="namespacevmec__equilibrium.html#a85a45be457fd2cd01d9161590731dcc1">More...</a><br /></td></tr>
-<tr class="separator:a85a45be457fd2cd01d9161590731dcc1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32f4955dc924eecc897cc2a0a8183d79"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79">vmec_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a32f4955dc924eecc897cc2a0a8183d79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79">More...</a><br /></td></tr>
-<tr class="separator:a32f4955dc924eecc897cc2a0a8183d79"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f39021e1aa97b9da18694fe73dcee02"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02">vmec_get_magnetic_volume_rgrid</a> (this)</td></tr>
-<tr class="memdesc:a2f39021e1aa97b9da18694fe73dcee02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration radial grid points.  <a href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02">More...</a><br /></td></tr>
-<tr class="separator:a2f39021e1aa97b9da18694fe73dcee02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a153e659e6b4e31436d722f36140b416a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a">vmec_get_magnetic_volume_zgrid</a> (this)</td></tr>
-<tr class="memdesc:a153e659e6b4e31436d722f36140b416a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration z grid points.  <a href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a">More...</a><br /></td></tr>
-<tr class="separator:a153e659e6b4e31436d722f36140b416a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab067c8fc0ce2d09f848418141935e64a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a">vmec_get_magnetic_volume_jrgrid</a> (this)</td></tr>
-<tr class="memdesc:ab067c8fc0ce2d09f848418141935e64a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jr grid points.  <a href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a">More...</a><br /></td></tr>
-<tr class="separator:ab067c8fc0ce2d09f848418141935e64a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abe3de7ad61803dbba28dab86b6837f37"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37">vmec_get_magnetic_volume_jphigrid</a> (this)</td></tr>
-<tr class="memdesc:abe3de7ad61803dbba28dab86b6837f37"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jphi grid points.  <a href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37">More...</a><br /></td></tr>
-<tr class="separator:abe3de7ad61803dbba28dab86b6837f37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16">vmec_get_magnetic_volume_jzgrid</a> (this)</td></tr>
-<tr class="memdesc:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jz grid points.  <a href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16">More...</a><br /></td></tr>
-<tr class="separator:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a6605a691589a81726ff51783fb2a27"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27">vmec_get_volume_int_element</a> (this)</td></tr>
-<tr class="memdesc:a4a6605a691589a81726ff51783fb2a27"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume integration element.  <a href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27">More...</a><br /></td></tr>
-<tr class="separator:a4a6605a691589a81726ff51783fb2a27"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad660be69e79334570cc9fef5d824eb3a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a">vmec_get_con_surface_krgrid</a> (this)</td></tr>
-<tr class="memdesc:ad660be69e79334570cc9fef5d824eb3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kr grid points.  <a href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a">More...</a><br /></td></tr>
-<tr class="separator:ad660be69e79334570cc9fef5d824eb3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82">vmec_get_con_surface_kphigrid</a> (this)</td></tr>
-<tr class="memdesc:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kphi grid points.  <a href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82">More...</a><br /></td></tr>
-<tr class="separator:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45a1832aeb9f2a2247e0973fd57218ec"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec">vmec_get_con_surface_kzgrid</a> (this)</td></tr>
-<tr class="memdesc:a45a1832aeb9f2a2247e0973fd57218ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kz grid points.  <a href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec">More...</a><br /></td></tr>
-<tr class="separator:a45a1832aeb9f2a2247e0973fd57218ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f">vmec_get_area_int_element</a> (this)</td></tr>
-<tr class="memdesc:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get area integration element.  <a href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f">More...</a><br /></td></tr>
-<tr class="separator:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e">vmec_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
-<tr class="memdesc:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external current.  <a href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e">More...</a><br /></td></tr>
-<tr class="separator:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a96e24113a75f37fbf54fd62109a9d18f"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a96e24113a75f37fbf54fd62109a9d18f">vmec_get_b_vac</a> (this, r_cyl)</td></tr>
-<tr class="memdesc:a96e24113a75f37fbf54fd62109a9d18f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vacuum magnetic field vector at a position.  <a href="namespacevmec__equilibrium.html#a96e24113a75f37fbf54fd62109a9d18f">More...</a><br /></td></tr>
-<tr class="separator:a96e24113a75f37fbf54fd62109a9d18f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4">vmec_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4">More...</a><br /></td></tr>
-<tr class="separator:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3ad17ca9d56db446c89d054904b48de1"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1">vmec_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a3ad17ca9d56db446c89d054904b48de1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1">More...</a><br /></td></tr>
-<tr class="separator:a3ad17ca9d56db446c89d054904b48de1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ace80249dec941b94c117a7196bcc82ff"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff">vmec_get_grid_start</a> (this)</td></tr>
-<tr class="memdesc:ace80249dec941b94c117a7196bcc82ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get start of the radial grid.  <a href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff">More...</a><br /></td></tr>
-<tr class="separator:ace80249dec941b94c117a7196bcc82ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a454861ad80f655ff10470f3de886e8a4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4">vmec_get_grid_stop</a> (this)</td></tr>
-<tr class="memdesc:a454861ad80f655ff10470f3de886e8a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4">More...</a><br /></td></tr>
-<tr class="separator:a454861ad80f655ff10470f3de886e8a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a383754a3291c20e5769e7cbcae3e79fd"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd">vmec_is_scaler_value</a> (this, id)</td></tr>
-<tr class="memdesc:a383754a3291c20e5769e7cbcae3e79fd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a scaler value.  <a href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd">More...</a><br /></td></tr>
-<tr class="separator:a383754a3291c20e5769e7cbcae3e79fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd8255c2b4d1657391a66f44f3b3245b"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#afd8255c2b4d1657391a66f44f3b3245b">vmec_is_1d_array</a> (this, id)</td></tr>
-<tr class="memdesc:afd8255c2b4d1657391a66f44f3b3245b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 1d array.  <a href="namespacevmec__equilibrium.html#afd8255c2b4d1657391a66f44f3b3245b">More...</a><br /></td></tr>
-<tr class="separator:afd8255c2b4d1657391a66f44f3b3245b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8995179b2033cbddfa164b805aaeb406"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406">vmec_is_2d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a8995179b2033cbddfa164b805aaeb406"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 2d array.  <a href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406">More...</a><br /></td></tr>
-<tr class="separator:a8995179b2033cbddfa164b805aaeb406"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a490bc87b33d05f0d697d3f9708e23a75"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75">vmec_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:a490bc87b33d05f0d697d3f9708e23a75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75">More...</a><br /></td></tr>
-<tr class="separator:a490bc87b33d05f0d697d3f9708e23a75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2">vmec_is_using_point</a> (this)</td></tr>
-<tr class="memdesc:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a the point magnetics are being used.  <a href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2">More...</a><br /></td></tr>
-<tr class="separator:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8960e1424ec05154a2ab95bc3ea74237"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">vmec_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:a8960e1424ec05154a2ab95bc3ea74237"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the VMEC equilibrium.  <a href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">More...</a><br /></td></tr>
-<tr class="separator:a8960e1424ec05154a2ab95bc3ea74237"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af32bc9eb29e352de8b798cc60e2e7627"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627">vmec_read_vac_file</a> (this, index, eq_comm)</td></tr>
-<tr class="memdesc:af32bc9eb29e352de8b798cc60e2e7627"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the vacuum magnetic field file.  <a href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627">More...</a><br /></td></tr>
-<tr class="separator:af32bc9eb29e352de8b798cc60e2e7627"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aeced22814edb5c90369367fe8ab1fcb0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespacevmec__equilibrium.html#aeced22814edb5c90369367fe8ab1fcb0">More...</a><br /></td></tr>
-<tr class="separator:aeced22814edb5c90369367fe8ab1fcb0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a57b943ab3a3657eb188595c753695219"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespacevmec__equilibrium.html#a57b943ab3a3657eb188595c753695219">More...</a><br /></td></tr>
-<tr class="separator:a57b943ab3a3657eb188595c753695219"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea915707bad2fe421dc8a77c2d537932"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932">vmec_write</a> (this, iou)</td></tr>
-<tr class="memdesc:aea915707bad2fe421dc8a77c2d537932"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932">More...</a><br /></td></tr>
-<tr class="separator:aea915707bad2fe421dc8a77c2d537932"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a3949073a7d7ce5b9b7365d8806e99f59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the current valid input.  <a href="namespacevmec__equilibrium.html#a3949073a7d7ce5b9b7365d8806e99f59">More...</a><br /></td></tr>
-<tr class="separator:a3949073a7d7ce5b9b7365d8806e99f59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6727b4c1743086f998f83a72e2bafe37"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37">vmec_def_result</a> (this, result_ncid, maxnsetps_dim_id)</td></tr>
-<tr class="memdesc:a6727b4c1743086f998f83a72e2bafe37"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37">More...</a><br /></td></tr>
-<tr class="separator:a6727b4c1743086f998f83a72e2bafe37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af2834de9b8119aa4a0e70250df21e96a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af2834de9b8119aa4a0e70250df21e96a">vmec_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:af2834de9b8119aa4a0e70250df21e96a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespacevmec__equilibrium.html#af2834de9b8119aa4a0e70250df21e96a">More...</a><br /></td></tr>
-<tr class="separator:af2834de9b8119aa4a0e70250df21e96a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84eefb3c064582b6c393f00a5a7dce78"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a84eefb3c064582b6c393f00a5a7dce78">vmec_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a84eefb3c064582b6c393f00a5a7dce78"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespacevmec__equilibrium.html#a84eefb3c064582b6c393f00a5a7dce78">More...</a><br /></td></tr>
-<tr class="separator:a84eefb3c064582b6c393f00a5a7dce78"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd">vmec_restart</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart vmec from the result file.  <a href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd">More...</a><br /></td></tr>
-<tr class="separator:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8fd9cef3fc180dadb977b7a797b2b698"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8fd9cef3fc180dadb977b7a797b2b698">vmec_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a8fd9cef3fc180dadb977b7a797b2b698"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the vmec state to children.  <a href="namespacevmec__equilibrium.html#a8fd9cef3fc180dadb977b7a797b2b698">More...</a><br /></td></tr>
-<tr class="separator:a8fd9cef3fc180dadb977b7a797b2b698"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae90a5479a5b49f344dd06bd649e1a18b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae90a5479a5b49f344dd06bd649e1a18b">vmec_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:ae90a5479a5b49f344dd06bd649e1a18b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child vmec state to the parent.  <a href="namespacevmec__equilibrium.html#ae90a5479a5b49f344dd06bd649e1a18b">More...</a><br /></td></tr>
-<tr class="separator:ae90a5479a5b49f344dd06bd649e1a18b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a061ad2b9b7b412d4b7277cfabe513b64"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a061ad2b9b7b412d4b7277cfabe513b64">vmec_reset_boundary</a> (this)</td></tr>
-<tr class="memdesc:a061ad2b9b7b412d4b7277cfabe513b64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the fixed boundary coefficients.  <a href="namespacevmec__equilibrium.html#a061ad2b9b7b412d4b7277cfabe513b64">More...</a><br /></td></tr>
-<tr class="separator:a061ad2b9b7b412d4b7277cfabe513b64"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a0d27af7c84f2f2a969807eb35f71080e"><td class="memItemLeft" align="right" valign="top"><a id="a0d27af7c84f2f2a969807eb35f71080e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a0d27af7c84f2f2a969807eb35f71080e">vmec_ac_id</a> = 13</td></tr>
-<tr class="memdesc:a0d27af7c84f2f2a969807eb35f71080e"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function current profile parameters. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a0d27af7c84f2f2a969807eb35f71080e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0eb05159129a5788d1a98abca4bc79e4"><td class="memItemLeft" align="right" valign="top"><a id="a0eb05159129a5788d1a98abca4bc79e4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a0eb05159129a5788d1a98abca4bc79e4">vmec_ac_aux_s_id</a> = 14</td></tr>
-<tr class="memdesc:a0eb05159129a5788d1a98abca4bc79e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment current profile s poitions. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a0eb05159129a5788d1a98abca4bc79e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa96a6846381c0590d45dc62f01623071"><td class="memItemLeft" align="right" valign="top"><a id="aa96a6846381c0590d45dc62f01623071"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa96a6846381c0590d45dc62f01623071">vmec_ac_aux_f_id</a> = 15</td></tr>
-<tr class="memdesc:aa96a6846381c0590d45dc62f01623071"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment current profile f values. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:aa96a6846381c0590d45dc62f01623071"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afe9599fa5099de28f623c099ce5444c8"><td class="memItemLeft" align="right" valign="top"><a id="afe9599fa5099de28f623c099ce5444c8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#afe9599fa5099de28f623c099ce5444c8">vmec_ai_id</a> = 16</td></tr>
-<tr class="memdesc:afe9599fa5099de28f623c099ce5444c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function iotabar profile parameters. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:afe9599fa5099de28f623c099ce5444c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a31af62e7ba2883c7235095ceaee7849a"><td class="memItemLeft" align="right" valign="top"><a id="a31af62e7ba2883c7235095ceaee7849a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a31af62e7ba2883c7235095ceaee7849a">vmec_ai_aux_s_id</a> = 17</td></tr>
-<tr class="memdesc:a31af62e7ba2883c7235095ceaee7849a"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment iotabar profile s poitions. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a31af62e7ba2883c7235095ceaee7849a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1ba47ec366b175b007b6a0a299dfed19"><td class="memItemLeft" align="right" valign="top"><a id="a1ba47ec366b175b007b6a0a299dfed19"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a1ba47ec366b175b007b6a0a299dfed19">vmec_ai_aux_f_id</a> = 18</td></tr>
-<tr class="memdesc:a1ba47ec366b175b007b6a0a299dfed19"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment iotabar profile f values. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a1ba47ec366b175b007b6a0a299dfed19"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0d694614c4807113b74d93c1b21cfd8b"><td class="memItemLeft" align="right" valign="top"><a id="a0d694614c4807113b74d93c1b21cfd8b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a0d694614c4807113b74d93c1b21cfd8b">vmec_am_id</a> = 19</td></tr>
-<tr class="memdesc:a0d694614c4807113b74d93c1b21cfd8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function pressure profile parameters. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a0d694614c4807113b74d93c1b21cfd8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6f568a0001657ce317729cad2d3334ad"><td class="memItemLeft" align="right" valign="top"><a id="a6f568a0001657ce317729cad2d3334ad"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6f568a0001657ce317729cad2d3334ad">vmec_am_aux_s_id</a> = 20</td></tr>
-<tr class="memdesc:a6f568a0001657ce317729cad2d3334ad"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment pressure profile s poitions. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a6f568a0001657ce317729cad2d3334ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3417820d16d8806ac3aa57d8b2ae8d76"><td class="memItemLeft" align="right" valign="top"><a id="a3417820d16d8806ac3aa57d8b2ae8d76"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3417820d16d8806ac3aa57d8b2ae8d76">vmec_am_aux_f_id</a> = 21</td></tr>
-<tr class="memdesc:a3417820d16d8806ac3aa57d8b2ae8d76"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment pressure profile f values. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a3417820d16d8806ac3aa57d8b2ae8d76"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75000b9085ae228243f7e28f6f313fb1"><td class="memItemLeft" align="right" valign="top"><a id="a75000b9085ae228243f7e28f6f313fb1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a75000b9085ae228243f7e28f6f313fb1">vmec_bloat_id</a> = 22</td></tr>
-<tr class="memdesc:a75000b9085ae228243f7e28f6f313fb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a75000b9085ae228243f7e28f6f313fb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7611b5edf6b8a9f4395159551985799"><td class="memItemLeft" align="right" valign="top"><a id="ab7611b5edf6b8a9f4395159551985799"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab7611b5edf6b8a9f4395159551985799">vmec_rbc_id</a> = 23</td></tr>
-<tr class="memdesc:ab7611b5edf6b8a9f4395159551985799"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary R cosine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:ab7611b5edf6b8a9f4395159551985799"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="memItemLeft" align="right" valign="top"><a id="a5879e5c983e5c247f6a91ff7ce371bd4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5879e5c983e5c247f6a91ff7ce371bd4">vmec_zbs_id</a> = 24</td></tr>
-<tr class="memdesc:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary Z sine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d3f41e4712891dac41771468dd70501"><td class="memItemLeft" align="right" valign="top"><a id="a6d3f41e4712891dac41771468dd70501"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6d3f41e4712891dac41771468dd70501">vmec_rbs_id</a> = 25</td></tr>
-<tr class="memdesc:a6d3f41e4712891dac41771468dd70501"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary R sine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a6d3f41e4712891dac41771468dd70501"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa532ceafa08a77eacff84a693d715873"><td class="memItemLeft" align="right" valign="top"><a id="aa532ceafa08a77eacff84a693d715873"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa532ceafa08a77eacff84a693d715873">vmec_zbc_id</a> = 26</td></tr>
-<tr class="memdesc:aa532ceafa08a77eacff84a693d715873"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary Z cosine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:aa532ceafa08a77eacff84a693d715873"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad461a717dd2c684868750403c2b36c1c"><td class="memItemLeft" align="right" valign="top"><a id="ad461a717dd2c684868750403c2b36c1c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad461a717dd2c684868750403c2b36c1c">vmec_extcur_id</a> = 27</td></tr>
-<tr class="memdesc:ad461a717dd2c684868750403c2b36c1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of external currents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:ad461a717dd2c684868750403c2b36c1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="memItemLeft" align="right" valign="top"><a id="adebd6316a6f0ce6fc3d816e9fc4d543c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#adebd6316a6f0ce6fc3d816e9fc4d543c">vmec_curtor_id</a> = 28</td></tr>
-<tr class="memdesc:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="mdescLeft">&#160;</td><td class="mdescRight">The toroidal current. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a489b23e08c98da132bde52d15c30c6c4"><td class="memItemLeft" align="right" valign="top"><a id="a489b23e08c98da132bde52d15c30c6c4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a489b23e08c98da132bde52d15c30c6c4">vmec_phiedge_id</a> = 29</td></tr>
-<tr class="memdesc:a489b23e08c98da132bde52d15c30c6c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">The edge magnetic flux. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a489b23e08c98da132bde52d15c30c6c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a842bf02fcc90038571786b127d36f9fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">The scaling parameter for the pressure. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
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-<tr class="memdesc:a33baf45e2a0611d0b465fdbc5675fad5"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface R cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memdesc:a1781d3f24016d7ded23dae829ed5af69"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface Z sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memdesc:a54fa67fbdd566b876fd47360aae62270"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface lambda cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memdesc:a07373f3ebb67b7811df5e9e67f03c078"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface g cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a07373f3ebb67b7811df5e9e67f03c078"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a882a76ad6b475fba0aff114a22ba7a01"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_s sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="separator:a985aa5ddf6d2efb83c79b18bdfe46596"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:af0a3f5865980531986dd169bfd423bd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_v cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memitem:ae754d08882cf5d5b9ac61b4fc1bcea32"><td class="memItemLeft" align="right" valign="top"><a id="ae754d08882cf5d5b9ac61b4fc1bcea32"></a>
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-<tr class="memdesc:ae754d08882cf5d5b9ac61b4fc1bcea32"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B^u cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:ae754d08882cf5d5b9ac61b4fc1bcea32"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a20aea2b3a3e94aaa14eac44660a62f2d"><td class="memItemLeft" align="right" valign="top"><a id="a20aea2b3a3e94aaa14eac44660a62f2d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a20aea2b3a3e94aaa14eac44660a62f2d">vmec_bsupvmnc_id</a> = 39</td></tr>
-<tr class="memdesc:a20aea2b3a3e94aaa14eac44660a62f2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B^v cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a20aea2b3a3e94aaa14eac44660a62f2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ada22928103003d9e4670cbf402825ee7"><td class="memItemLeft" align="right" valign="top"><a id="ada22928103003d9e4670cbf402825ee7"></a>
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-<tr class="memdesc:ada22928103003d9e4670cbf402825ee7"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface R sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:ada22928103003d9e4670cbf402825ee7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa56c4f9a2316cc456796de68e50f6701"><td class="memItemLeft" align="right" valign="top"><a id="aa56c4f9a2316cc456796de68e50f6701"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa56c4f9a2316cc456796de68e50f6701">vmec_zmnc_id</a> = 41</td></tr>
-<tr class="memdesc:aa56c4f9a2316cc456796de68e50f6701"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface Z cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:aa56c4f9a2316cc456796de68e50f6701"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03616dbe064dc25fc0b9564a0a7ffe62"><td class="memItemLeft" align="right" valign="top"><a id="a03616dbe064dc25fc0b9564a0a7ffe62"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a03616dbe064dc25fc0b9564a0a7ffe62">vmec_lmnc_id</a> = 42</td></tr>
-<tr class="memdesc:a03616dbe064dc25fc0b9564a0a7ffe62"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface lambda sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a03616dbe064dc25fc0b9564a0a7ffe62"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a794d9382c295bf39fa34873594fe07bd"><td class="memItemLeft" align="right" valign="top"><a id="a794d9382c295bf39fa34873594fe07bd"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a794d9382c295bf39fa34873594fe07bd">vmec_gmns_id</a> = 43</td></tr>
-<tr class="memdesc:a794d9382c295bf39fa34873594fe07bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface g sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a794d9382c295bf39fa34873594fe07bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abd22b5c2a94a384a48605c9bb288e2aa"><td class="memItemLeft" align="right" valign="top"><a id="abd22b5c2a94a384a48605c9bb288e2aa"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abd22b5c2a94a384a48605c9bb288e2aa">vmec_bsubsmnc_id</a> = 44</td></tr>
-<tr class="memdesc:abd22b5c2a94a384a48605c9bb288e2aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_s cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:abd22b5c2a94a384a48605c9bb288e2aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acaf34bad899211e045714b8908a32c22"><td class="memItemLeft" align="right" valign="top"><a id="acaf34bad899211e045714b8908a32c22"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#acaf34bad899211e045714b8908a32c22">vmec_bsubumns_id</a> = 45</td></tr>
-<tr class="memdesc:acaf34bad899211e045714b8908a32c22"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_u sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:acaf34bad899211e045714b8908a32c22"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa3d080a5036495880fe370e401688cac"><td class="memItemLeft" align="right" valign="top"><a id="aa3d080a5036495880fe370e401688cac"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa3d080a5036495880fe370e401688cac">vmec_bsubvmns_id</a> = 46</td></tr>
-<tr class="memdesc:aa3d080a5036495880fe370e401688cac"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_v sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:aa3d080a5036495880fe370e401688cac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae417052442e5d19e585aa0864b8d116e"><td class="memItemLeft" align="right" valign="top"><a id="ae417052442e5d19e585aa0864b8d116e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae417052442e5d19e585aa0864b8d116e">vmec_bsupumns_id</a> = 47</td></tr>
-<tr class="memdesc:ae417052442e5d19e585aa0864b8d116e"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B^u sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:ae417052442e5d19e585aa0864b8d116e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8e3ebee28b1fc903e4ee00dd84dc6b6d"><td class="memItemLeft" align="right" valign="top"><a id="a8e3ebee28b1fc903e4ee00dd84dc6b6d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8e3ebee28b1fc903e4ee00dd84dc6b6d">vmec_bsupvmns_id</a> = 48</td></tr>
-<tr class="memdesc:a8e3ebee28b1fc903e4ee00dd84dc6b6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B^v sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a8e3ebee28b1fc903e4ee00dd84dc6b6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa5956a2ec62a6d82592d034ed46f4a26"><td class="memItemLeft" align="right" valign="top"><a id="aa5956a2ec62a6d82592d034ed46f4a26"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa5956a2ec62a6d82592d034ed46f4a26">vmec_phi_id</a> = 49</td></tr>
-<tr class="memdesc:aa5956a2ec62a6d82592d034ed46f4a26"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:aa5956a2ec62a6d82592d034ed46f4a26"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d9bb3b9d252e12453bd5a703783b81d"><td class="memItemLeft" align="right" valign="top"><a id="a5d9bb3b9d252e12453bd5a703783b81d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5d9bb3b9d252e12453bd5a703783b81d">vmec_iotaf_id</a> = 50</td></tr>
-<tr class="memdesc:a5d9bb3b9d252e12453bd5a703783b81d"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of full grid iotabar. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a5d9bb3b9d252e12453bd5a703783b81d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaad2b455e2fcf2ff14d6da58f4d7ad41"><td class="memItemLeft" align="right" valign="top"><a id="aaad2b455e2fcf2ff14d6da58f4d7ad41"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aaad2b455e2fcf2ff14d6da58f4d7ad41">vmec_iotas_id</a> = 51</td></tr>
-<tr class="memdesc:aaad2b455e2fcf2ff14d6da58f4d7ad41"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of half grid iotabar. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:aaad2b455e2fcf2ff14d6da58f4d7ad41"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6bd2aacb0a99b2c5629d7b2906905b80"><td class="memItemLeft" align="right" valign="top"><a id="a6bd2aacb0a99b2c5629d7b2906905b80"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6bd2aacb0a99b2c5629d7b2906905b80">vmec_raxis_cc_id</a> = 52</td></tr>
-<tr class="memdesc:a6bd2aacb0a99b2c5629d7b2906905b80"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of magnetic axis R cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a6bd2aacb0a99b2c5629d7b2906905b80"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac7e6537bc8d3bd12a8ccc32e2a7c1c66"><td class="memItemLeft" align="right" valign="top"><a id="ac7e6537bc8d3bd12a8ccc32e2a7c1c66"></a>
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-<tr class="memdesc:ac7e6537bc8d3bd12a8ccc32e2a7c1c66"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of magnetic axis R sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:ac7e6537bc8d3bd12a8ccc32e2a7c1c66"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b55ac87381ef7b3d653ca923464ad55"><td class="memItemLeft" align="right" valign="top"><a id="a6b55ac87381ef7b3d653ca923464ad55"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6b55ac87381ef7b3d653ca923464ad55">vmec_zaxis_cc_id</a> = 54</td></tr>
-<tr class="memdesc:a6b55ac87381ef7b3d653ca923464ad55"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of magnetic axis Z cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a6b55ac87381ef7b3d653ca923464ad55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed97e7590d9e09a6723baa6993a794d1"><td class="memItemLeft" align="right" valign="top"><a id="aed97e7590d9e09a6723baa6993a794d1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aed97e7590d9e09a6723baa6993a794d1">vmec_zaxis_cs_id</a> = 55</td></tr>
-<tr class="memdesc:aed97e7590d9e09a6723baa6993a794d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of magnetic axis Z sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:aed97e7590d9e09a6723baa6993a794d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a81bbaad32c40492fc95cc7e2b4d827b8"><td class="memItemLeft" align="right" valign="top"><a id="a81bbaad32c40492fc95cc7e2b4d827b8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a81bbaad32c40492fc95cc7e2b4d827b8">vmec_qfact_id</a> = 56</td></tr>
-<tr class="memdesc:a81bbaad32c40492fc95cc7e2b4d827b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of full grid safety factor. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a81bbaad32c40492fc95cc7e2b4d827b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac69614cd96281639c1f33f68f7ac930a"><td class="memItemLeft" align="right" valign="top"><a id="ac69614cd96281639c1f33f68f7ac930a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac69614cd96281639c1f33f68f7ac930a">vmec_pres_id</a> = 57</td></tr>
-<tr class="memdesc:ac69614cd96281639c1f33f68f7ac930a"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of full grid safety factor. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:ac69614cd96281639c1f33f68f7ac930a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b486a592ab38e2534825cf08499281a"><td class="memItemLeft" align="right" valign="top"><a id="a5b486a592ab38e2534825cf08499281a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5b486a592ab38e2534825cf08499281a">vmec_presf_id</a> = 58</td></tr>
-<tr class="memdesc:a5b486a592ab38e2534825cf08499281a"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of full grid safety factor. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a5b486a592ab38e2534825cf08499281a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae7f7ea0d96eed5652d3129cdbda49983"><td class="memItemLeft" align="right" valign="top"><a id="ae7f7ea0d96eed5652d3129cdbda49983"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae7f7ea0d96eed5652d3129cdbda49983">vmec_pp_ne_b_id</a> = 59</td></tr>
-<tr class="memdesc:ae7f7ea0d96eed5652d3129cdbda49983"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function density profile parameters. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:ae7f7ea0d96eed5652d3129cdbda49983"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3faf8579d3a52bad762981fca8e2d93c"><td class="memItemLeft" align="right" valign="top"><a id="a3faf8579d3a52bad762981fca8e2d93c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3faf8579d3a52bad762981fca8e2d93c">vmec_pp_ne_as_id</a> = 60</td></tr>
-<tr class="memdesc:a3faf8579d3a52bad762981fca8e2d93c"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment density profile s poitions. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a3faf8579d3a52bad762981fca8e2d93c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a019e1580d2b7dbe7a37758598bccd04c"><td class="memItemLeft" align="right" valign="top"><a id="a019e1580d2b7dbe7a37758598bccd04c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a019e1580d2b7dbe7a37758598bccd04c">vmec_pp_ne_af_id</a> = 61</td></tr>
-<tr class="memdesc:a019e1580d2b7dbe7a37758598bccd04c"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment density profile f values. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a019e1580d2b7dbe7a37758598bccd04c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a077645c1708d8e0ddb8df55abd4c9803"><td class="memItemLeft" align="right" valign="top"><a id="a077645c1708d8e0ddb8df55abd4c9803"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a077645c1708d8e0ddb8df55abd4c9803">vmec_pp_sxrem_b_id</a> = 62</td></tr>
-<tr class="memdesc:a077645c1708d8e0ddb8df55abd4c9803"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function sxrem profile parameters. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a077645c1708d8e0ddb8df55abd4c9803"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a871f244a3ae6e536ccb86941539ca75b"><td class="memItemLeft" align="right" valign="top"><a id="a871f244a3ae6e536ccb86941539ca75b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a871f244a3ae6e536ccb86941539ca75b">vmec_pp_sxrem_as_id</a> = 63</td></tr>
-<tr class="memdesc:a871f244a3ae6e536ccb86941539ca75b"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment sxrem profile s poitions. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a871f244a3ae6e536ccb86941539ca75b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af4f2edd1d01924f02f6f034c98ccacfb"><td class="memItemLeft" align="right" valign="top"><a id="af4f2edd1d01924f02f6f034c98ccacfb"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af4f2edd1d01924f02f6f034c98ccacfb">vmec_pp_sxrem_af_id</a> = 64</td></tr>
-<tr class="memdesc:af4f2edd1d01924f02f6f034c98ccacfb"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment sxrem profile f values. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:af4f2edd1d01924f02f6f034c98ccacfb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae6576499bb805e1a2f82cbe9b1cf2758"><td class="memItemLeft" align="right" valign="top"><a id="ae6576499bb805e1a2f82cbe9b1cf2758"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae6576499bb805e1a2f82cbe9b1cf2758">vmec_pp_te_b_id</a> = 65</td></tr>
-<tr class="memdesc:ae6576499bb805e1a2f82cbe9b1cf2758"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function electron temperature profile parameters. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:ae6576499bb805e1a2f82cbe9b1cf2758"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08b56327e084607b422da74e52f3dd05"><td class="memItemLeft" align="right" valign="top"><a id="a08b56327e084607b422da74e52f3dd05"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a08b56327e084607b422da74e52f3dd05">vmec_pp_te_as_id</a> = 66</td></tr>
-<tr class="memdesc:a08b56327e084607b422da74e52f3dd05"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment electron temperature profile s poitions. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a08b56327e084607b422da74e52f3dd05"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad62180f4da1c95c3f71f0fd648828b76"><td class="memItemLeft" align="right" valign="top"><a id="ad62180f4da1c95c3f71f0fd648828b76"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad62180f4da1c95c3f71f0fd648828b76">vmec_pp_te_af_id</a> = 67</td></tr>
-<tr class="memdesc:ad62180f4da1c95c3f71f0fd648828b76"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment electron temperature profile f values. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:ad62180f4da1c95c3f71f0fd648828b76"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa3384d00d86f074fa5d6b278fa405d3c"><td class="memItemLeft" align="right" valign="top"><a id="aa3384d00d86f074fa5d6b278fa405d3c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa3384d00d86f074fa5d6b278fa405d3c">vmec_pp_ti_b_id</a> = 68</td></tr>
-<tr class="memdesc:aa3384d00d86f074fa5d6b278fa405d3c"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of function ion temperature profile parameters. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:aa3384d00d86f074fa5d6b278fa405d3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:add270ee990889e4bde13bea4cead07bd"><td class="memItemLeft" align="right" valign="top"><a id="add270ee990889e4bde13bea4cead07bd"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#add270ee990889e4bde13bea4cead07bd">vmec_pp_ti_as_id</a> = 69</td></tr>
-<tr class="memdesc:add270ee990889e4bde13bea4cead07bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment ion temperature profile s poitions. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:add270ee990889e4bde13bea4cead07bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a639e38b37362b53fba6983ace6855c03"><td class="memItemLeft" align="right" valign="top"><a id="a639e38b37362b53fba6983ace6855c03"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a639e38b37362b53fba6983ace6855c03">vmec_pp_ti_af_id</a> = 70</td></tr>
-<tr class="memdesc:a639e38b37362b53fba6983ace6855c03"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment ion temperature profile f values. Defined in pprofile_T. <br /></td></tr>
-<tr class="separator:a639e38b37362b53fba6983ace6855c03"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a31e14ef4dfede4ea2ce800c6fe7b67e4"><td class="memItemLeft" align="right" valign="top"><a id="a31e14ef4dfede4ea2ce800c6fe7b67e4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a31e14ef4dfede4ea2ce800c6fe7b67e4">vmec_vvc_smaleli_id</a> = 71</td></tr>
-<tr class="memdesc:a31e14ef4dfede4ea2ce800c6fe7b67e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Internal inducance. Defined in v3f_vmec_comm. Computed in eqfor. <br /></td></tr>
-<tr class="separator:a31e14ef4dfede4ea2ce800c6fe7b67e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a549ded884eb067cea7d852a7befb28da"><td class="memItemLeft" align="right" valign="top"><a id="a549ded884eb067cea7d852a7befb28da"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a549ded884eb067cea7d852a7befb28da">vmec_vvc_kappa_p_id</a> = 72</td></tr>
-<tr class="memdesc:a549ded884eb067cea7d852a7befb28da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mean elongation. Defined in v3f_vmec_comm. Computed in eqfor. <br /></td></tr>
-<tr class="separator:a549ded884eb067cea7d852a7befb28da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d5932b9f2d1fceba01f36ef685f6e5b"><td class="memItemLeft" align="right" valign="top"><a id="a1d5932b9f2d1fceba01f36ef685f6e5b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a1d5932b9f2d1fceba01f36ef685f6e5b">vmec_betatot_id</a> = 73</td></tr>
-<tr class="memdesc:a1d5932b9f2d1fceba01f36ef685f6e5b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total Beta. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a1d5932b9f2d1fceba01f36ef685f6e5b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a298751105b23c10ee1ab9a3e220cc613"><td class="memItemLeft" align="right" valign="top"><a id="a298751105b23c10ee1ab9a3e220cc613"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a298751105b23c10ee1ab9a3e220cc613">vmec_betapol_id</a> = 74</td></tr>
-<tr class="memdesc:a298751105b23c10ee1ab9a3e220cc613"><td class="mdescLeft">&#160;</td><td class="mdescRight">Poloidal Beta. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a298751105b23c10ee1ab9a3e220cc613"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2a7a4c08d59d8dc8dfe80ce8e711ee99"><td class="memItemLeft" align="right" valign="top"><a id="a2a7a4c08d59d8dc8dfe80ce8e711ee99"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2a7a4c08d59d8dc8dfe80ce8e711ee99">vmec_betator_id</a> = 75</td></tr>
-<tr class="memdesc:a2a7a4c08d59d8dc8dfe80ce8e711ee99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Toroidal Beta. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a2a7a4c08d59d8dc8dfe80ce8e711ee99"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2a5483a5d6dbaa2ee33c06ef67b5dc89"><td class="memItemLeft" align="right" valign="top"><a id="a2a5483a5d6dbaa2ee33c06ef67b5dc89"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2a5483a5d6dbaa2ee33c06ef67b5dc89">vmec_betaxis_id</a> = 76</td></tr>
-<tr class="memdesc:a2a5483a5d6dbaa2ee33c06ef67b5dc89"><td class="mdescLeft">&#160;</td><td class="mdescRight">Beta on axis. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a2a5483a5d6dbaa2ee33c06ef67b5dc89"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e08d8477dd4016a1f954ed25d8a3a0e"><td class="memItemLeft" align="right" valign="top"><a id="a2e08d8477dd4016a1f954ed25d8a3a0e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2e08d8477dd4016a1f954ed25d8a3a0e">vmec_jcuru_id</a> = 77</td></tr>
-<tr class="memdesc:a2e08d8477dd4016a1f954ed25d8a3a0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Poloidal current density. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a2e08d8477dd4016a1f954ed25d8a3a0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a378bedd0a2c9bec3416e31f8388450b8"><td class="memItemLeft" align="right" valign="top"><a id="a378bedd0a2c9bec3416e31f8388450b8"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a378bedd0a2c9bec3416e31f8388450b8">vmec_jcurv_id</a> = 78</td></tr>
-<tr class="memdesc:a378bedd0a2c9bec3416e31f8388450b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Toroidal current density. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a378bedd0a2c9bec3416e31f8388450b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abe673b609b43980702991847b92a8a2d"><td class="memItemLeft" align="right" valign="top"><a id="abe673b609b43980702991847b92a8a2d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abe673b609b43980702991847b92a8a2d">vmec_jdotb_id</a> = 79</td></tr>
-<tr class="memdesc:abe673b609b43980702991847b92a8a2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current density in direction of b field. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:abe673b609b43980702991847b92a8a2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="memItemLeft" align="right" valign="top"><a id="a58c5b0f5f2d05165a7ca39de57dfba65"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a58c5b0f5f2d05165a7ca39de57dfba65">vmec_phi_offset_id</a> = 80</td></tr>
-<tr class="memdesc:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="mdescLeft">&#160;</td><td class="mdescRight">Plasma Phi offset. This is a parameter to allow changing the phi angle of a quasi helical state in an RFP. Defined in <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>. <br /></td></tr>
-<tr class="separator:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="memItemLeft" align="right" valign="top"><a id="a536977d2cc66ceb4db1bb1d8c6ba6269"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a536977d2cc66ceb4db1bb1d8c6ba6269">vmec_z_offset_id</a> = 81</td></tr>
-<tr class="memdesc:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="mdescLeft">&#160;</td><td class="mdescRight">Plasma z offset. This is a parameter to allow changing the vertical shift of the plasma. <br /></td></tr>
-<tr class="separator:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5851534253f23e5c91873d4651850e36"><td class="memItemLeft" align="right" valign="top"><a id="a5851534253f23e5c91873d4651850e36"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5851534253f23e5c91873d4651850e36">magnetic_cache_vc_min_grid_points</a> = 101</td></tr>
-<tr class="memdesc:a5851534253f23e5c91873d4651850e36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual casing grid points for vacuum field measurements. <br /></td></tr>
-<tr class="separator:a5851534253f23e5c91873d4651850e36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac12d8f53d8ca1235ab5bbf33128e04bb"><td class="memItemLeft" align="right" valign="top"><a id="ac12d8f53d8ca1235ab5bbf33128e04bb"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac12d8f53d8ca1235ab5bbf33128e04bb">magnetic_cache_vc_grid_dim</a> = 0.01</td></tr>
-<tr class="memdesc:ac12d8f53d8ca1235ab5bbf33128e04bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual casing grid dimension. <br /></td></tr>
-<tr class="separator:ac12d8f53d8ca1235ab5bbf33128e04bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>. This module contains all the code necessary to interface V3FIT with VMEC. </p>
-<dl class="section user"><dt>Super Class:</dt><dd><a class="el" href="namespaceequilibrium.html">equilibrium</a> </dd></dl>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a3698795faf0024a046d0c89a2ee84e4d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3698795faf0024a046d0c89a2ee84e4d">&#9670;&nbsp;</a></span>vmec_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">type (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>) function, pointer vmec_equilibrium::vmec_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ne</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>te</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ti</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__pointer.html">pprofile_pointer</a>), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>sxrem</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>z_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>pol_rad_ratio</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_name</td><td>Filename of the vmec namelist input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Filename of the vmec wout input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne</td><td>pprofile_T for the electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te</td><td>pprofile_T for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti</td><td>pprofile_T for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem</td><td>pprofile_T for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_offset</td><td>Initial phi offset of the plasma relative to the diagnostics in radians. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_offset</td><td>Initial Z offset of the plasma relative to the machine center. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pol_rad_ratio</td><td>Ratio of poloidal grid to radial grid. Defines the gird sizes when computing magnetic diagnostics. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit to log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for VMEC. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator pool for reconstruction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="ab2aedb4b919e973a902163d8da0a7109"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab2aedb4b919e973a902163d8da0a7109">&#9670;&nbsp;</a></span>vmec_construct_sub()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_construct_sub </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>wout_file_name</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ne</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>te</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>), pointer&#160;</td>
-          <td class="paramname"><em>ti</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structpprofile__t_1_1pprofile__pointer.html">pprofile_pointer</a>), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>sxrem</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>z_offset</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>pol_rad_ratio</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object. </p>
-<p>Initializes a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object. Runs vmec for one iteration to initialize all the input parameters. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">file_name</td><td>Filename of the vmec namelist input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Filename of the vmec wout input file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne</td><td>pprofile_T for the electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te</td><td>pprofile_T for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti</td><td>pprofile_T for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem</td><td>pprofile_T for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_offset</td><td>Initial phi offset of the plasma relative to the diagnostics in radians. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_offset</td><td>Initial Z offset of the plasma relative to the machine center. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pol_rad_ratio</td><td>Ratio of poloidal grid to radial grid. Defines the gird sizes when computing magnetic diagnostics. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit to log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for VMEC. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator pool for reconstruction. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8960e1424ec05154a2ab95bc3ea74237"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8960e1424ec05154a2ab95bc3ea74237">&#9670;&nbsp;</a></span>vmec_converge()</h2>
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-<div class="memitem">
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-          <td class="memname">logical function vmec_equilibrium::vmec_converge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>num_iter</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Solves the VMEC equilibrium. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae303206d825ca2ea689dcda3fa889a80">equilibrium::equilibrium_converge</a>. Solves the vmec equilibrium and loads the resulting wout file in preparation of computing modeled signals.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">num_iter</td><td>Counter to track the number of iterations. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/Output unit of the runlog file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for VMEC. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the convergece was sucessful and false otherwise. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000020">Todo:</a></b></dt><dd>FIXME: Put in error reporting here. For now leave this blank until I can figure how v3fit decides if vmec has converged. </dd></dl>
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-</div>
-</div>
-<a id="a6727b4c1743086f998f83a72e2bafe37"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6727b4c1743086f998f83a72e2bafe37">&#9670;&nbsp;</a></span>vmec_def_result()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_def_result </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>maxnsetps_dim_id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Define NetCDF variables for the result file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ab1a77f62a029a487c5bb29b041e63482">equilibrium::equilibrium_def_result</a>. Defines dimensions and variables for the VMEC contribution of the result file. Multi dimensional arrays need to be transposed so arrays appear in the correct order in non fortran languages.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">maxnsetps_dim_id</td><td>NetCDF dimension id of the number of steps dimension. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aac74c89608f1ab1ba7efa6a6a80bd9d5"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aac74c89608f1ab1ba7efa6a6a80bd9d5">&#9670;&nbsp;</a></span>vmec_destruct()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_destruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Deconstruct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object. </p>
-<p>Deallocates memory and uninitializes a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7d9a3804c4ddbfbe11aefe53d7382e1f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d9a3804c4ddbfbe11aefe53d7382e1f">&#9670;&nbsp;</a></span>vmec_get_area_int_element()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_area_int_element </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get area integration element. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae57f6af254fdd6577cc47cb3e28b285e">equilibrium::equilibrium_get_area_int_element</a>. For vmec this is |J||e^s|*du*dv where J is the jacobian. A 1/J term is integrated into kr, kphi and kz. Since due to the resulting |J|/J term, the the sign of the jacobian must be taken into account. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e" title="Set magnetic cache initialy.">vmec_equilibrium::vmec_set_magnetic_cache_calc</a> equation 3.</dd></dl>
-<ul>
-<li>du = 2*Pi/number of u grid</li>
-<li>dv = 2*Pi/number of field periods/number of toroidal planes</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The area integration element. </dd></dl>
-
-</div>
-</div>
-<a id="a96e24113a75f37fbf54fd62109a9d18f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a96e24113a75f37fbf54fd62109a9d18f">&#9670;&nbsp;</a></span>vmec_get_b_vac()</h2>
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-<div class="memitem">
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-          <td class="memname">real (rprec) function, dimension(3) vmec_equilibrium::vmec_get_b_vac </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>r_cyl</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the vacuum magnetic field vector at a position. </p>
-<p>This interpolated the mgrid field on to the position. This should not be called if free boundary modes was not used.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_cyl</td><td>Cartesian position to get the magnetic field vector at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The vaccum magnetic field vector at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a77d739f769354141eecec5844b37263a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a77d739f769354141eecec5844b37263a">&#9670;&nbsp;</a></span>vmec_get_b_vec()</h2>
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-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) vmec_equilibrium::vmec_get_b_vec </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>cyl</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the magnetic field vector at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_B_vec.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the magnetic field vector at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">cyl</td><td>Flag that specifies if the bfield should be returned in cartesian or cylindical coordinates. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The magnetic field vector at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a53c6f155f4a4bdbea63fe7cc3e229f82"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a53c6f155f4a4bdbea63fe7cc3e229f82">&#9670;&nbsp;</a></span>vmec_get_con_surface_kphigrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer vmec_equilibrium::vmec_get_con_surface_kphigrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kphi grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae0ddc62a0a73b6923d40e25235dcd608">equilibrium::equilibrium_get_con_surface_kphigrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ad660be69e79334570cc9fef5d824eb3a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad660be69e79334570cc9fef5d824eb3a">&#9670;&nbsp;</a></span>vmec_get_con_surface_krgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer vmec_equilibrium::vmec_get_con_surface_krgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kr grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ad5995f889d642a7b1e2cde874f9c3670">equilibrium::equilibrium_get_con_surface_krgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a45a1832aeb9f2a2247e0973fd57218ec"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a45a1832aeb9f2a2247e0973fd57218ec">&#9670;&nbsp;</a></span>vmec_get_con_surface_kzgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:), pointer vmec_equilibrium::vmec_get_con_surface_kzgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the conducting surface integration kz grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a05f9de6ea21b9862f05c7497b16ebc93">equilibrium::equilibrium_get_con_surface_kzgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="aa8fc30f3af769bb9675e9e6588ec01a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa8fc30f3af769bb9675e9e6588ec01a4">&#9670;&nbsp;</a></span>vmec_get_ext_b_plasma()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) vmec_equilibrium::vmec_get_ext_b_plasma </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>position</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>axi_only</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external plasma magnetic field. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ac5e34a9e88e40299503f1f4de95ff413">equilibrium::equilibrium_get_ext_b_plasma</a>. The b field is returned in cyclindical coordinates. This function does not require shifting the plasma relative to the diagnostics. The plasma has already been shifted when computing the surface currents and prime position.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">position</td><td>Position to compute the fields at in cylindrical coordinates. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">axi_only</td><td>Gives only the axisymmtric component of the magnetic field. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external currents. </dd></dl>
-
-</div>
-</div>
-<a id="a0a0f36d6a4d31de871ed1f0430e9317e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0a0f36d6a4d31de871ed1f0430e9317e">&#9670;&nbsp;</a></span>vmec_get_ext_currents()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer vmec_equilibrium::vmec_get_ext_currents </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_currents</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(out)&#160;</td>
-          <td class="paramname"><em>scale_currents</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get external current. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aa19f91d7d7db0a845b59f5106dbe3778">equilibrium::equilibrium_get_ext_currents</a>. The array memory containing the external currents is owned by VMEC. Return a pointer to it. if VMEC is run in fixed boundary mode, return a null() pointer.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_currents</td><td>Forces the number of currents to return if greater than zero. </td></tr>
-    <tr><td class="paramdir">[out]</td><td class="paramname">scale_currents</td><td>Informs the caller that currents need to be scaled. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The external currents. </dd></dl>
-
-</div>
-</div>
-<a id="a85a45be457fd2cd01d9161590731dcc1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a85a45be457fd2cd01d9161590731dcc1">&#9670;&nbsp;</a></span>vmec_get_flux()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_flux </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets VMEC normalized flux value at position. </p>
-<p>Converts from cartesian coordinates to VMEC's flux coordinates.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the s position at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The normalized flux position at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ae78a669c86f61b357cee909d7720cd02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae78a669c86f61b357cee909d7720cd02">&#9670;&nbsp;</a></span>vmec_get_gp_ne_ij()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ne_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the two indicies. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ad53a67218ebb9f98232331c17e81054b">equilibrium::equilibrium_get_gp_ne_ij</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="a3b025d92cb76b4918552f70f6f3ae557"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3b025d92cb76b4918552f70f6f3ae557">&#9670;&nbsp;</a></span>vmec_get_gp_ne_num_hyper_param()</h2>
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-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_gp_ne_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron density gp kernel hyper parameters. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a6b1e3e48ed232d3d681aa0bcd1077257">equilibrium::equilibrium_get_gp_ne_num_hyper_param</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="aa3795f5a6b5bdbac8556de3e6c4f480c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa3795f5a6b5bdbac8556de3e6c4f480c">&#9670;&nbsp;</a></span>vmec_get_gp_ne_pi()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ne_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1f8b1beb3be65794fe26c15da0e44e20">equilibrium::equilibrium_get_gp_ne_pi</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="ac917858da3176ed2a0c6c5f93adb0ae4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac917858da3176ed2a0c6c5f93adb0ae4">&#9670;&nbsp;</a></span>vmec_get_gp_ne_pp()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ne_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron density gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1e0710d9648460584c1371ce2cac1e08">equilibrium::equilibrium_get_gp_ne_pp</a>. If no density profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the electron density at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ac2cc60f25eaca40b76f82f4208b1809e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac2cc60f25eaca40b76f82f4208b1809e">&#9670;&nbsp;</a></span>vmec_get_gp_sxrem_ij()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_sxrem_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the two indicies. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1148888b36cd9805341b7b6b7d8551db">equilibrium::equilibrium_get_gp_sxrem_ij</a>. If no soft x-ray emissivity profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="a69d3909c224767679dcf0e5371d79649"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a69d3909c224767679dcf0e5371d79649">&#9670;&nbsp;</a></span>vmec_get_gp_sxrem_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_gp_sxrem_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of soft x-ray emission gp kernel hyper parameters. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a4d9c458221a534f7d60a8ce37fe8176e">equilibrium::equilibrium_get_gp_sxrem_num_hyper_param</a>. If no soft x-ray emission profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="ab2f4fa4892b21caeaa2e730d24c7c565"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab2f4fa4892b21caeaa2e730d24c7c565">&#9670;&nbsp;</a></span>vmec_get_gp_sxrem_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_sxrem_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a2033d74bc0923a953475cb1a522de1c6">equilibrium::equilibrium_get_gp_sxrem_pi</a>. If no soft x-ray emissivity profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="aca9eb27b9175b8e3005db02ec9f1b0a1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aca9eb27b9175b8e3005db02ec9f1b0a1">&#9670;&nbsp;</a></span>vmec_get_gp_sxrem_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_sxrem_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the soft x-ray emissivity gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a797743172f6b65ed4bdded8b6dce420c">equilibrium::equilibrium_get_gp_sxrem_pp</a>. If no soft x-ray emissivity profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a520d0f5ef178c883ed68f7e44b38c164"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a520d0f5ef178c883ed68f7e44b38c164">&#9670;&nbsp;</a></span>vmec_get_gp_te_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_te_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the two indicies. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a236332f09fc1597b62674fcb1d5392a1">equilibrium::equilibrium_get_gp_te_ij</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="a5d1e2a51f8c02300257ddc1c711df165"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d1e2a51f8c02300257ddc1c711df165">&#9670;&nbsp;</a></span>vmec_get_gp_te_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_gp_te_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of electron temperature gp kernel hyper parameters. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a2e5934e7ce31abb107f397cc2a3c8895">equilibrium::equilibrium_get_gp_te_num_hyper_param</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a2886974d81d88cb700bafeb8f3273fe8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2886974d81d88cb700bafeb8f3273fe8">&#9670;&nbsp;</a></span>vmec_get_gp_te_pi()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_te_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a15c35ecf90c3ec13d7561d2a6fd032b9">equilibrium::equilibrium_get_gp_te_pi</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="aeab774cc5fb4313d377d9f75cf1268db"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeab774cc5fb4313d377d9f75cf1268db">&#9670;&nbsp;</a></span>vmec_get_gp_te_pp()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_te_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the electron temperature gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aa33954648a43a182ee9c771679755d9a">equilibrium::equilibrium_get_gp_te_pp</a>. If no electron temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the electron temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a26bde51d5aefffcfce4cae769b085f6e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a26bde51d5aefffcfce4cae769b085f6e">&#9670;&nbsp;</a></span>vmec_get_gp_ti_ij()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ti_ij </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the two indicies. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#af3b16cbdb5a8dafd463333c0ada0a4f6">equilibrium::equilibrium_get_gp_ti_ij</a>. If no ion profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>ith profile position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j</td><td>jth profile position. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for i, j. </dd></dl>
-
-</div>
-</div>
-<a id="af19abc6f123b38c9c8ed0897d8194e61"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af19abc6f123b38c9c8ed0897d8194e61">&#9670;&nbsp;</a></span>vmec_get_gp_ti_num_hyper_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_gp_ti_num_hyper_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the number of ion temperature gp kernel hyper parameters. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a0532f8e915d83525f326d9b7c581a35e">equilibrium::equilibrium_get_gp_ti_num_hyper_param</a>. If no ion temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Number of kernel hyper parameters. </dd></dl>
-
-</div>
-</div>
-<a id="a5cc64e667306b00293c1eaa9b6d6a4eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5cc64e667306b00293c1eaa9b6d6a4eb">&#9670;&nbsp;</a></span>vmec_get_gp_ti_pi()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ti_pi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Get the ion temperature gp kernel value for the position and index. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#aebf430af623ee696d366dcfb93022e7c">equilibrium::equilibrium_get_gp_ti_pi</a>. If no ion temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i</td><td>Profile position index. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and i. </dd></dl>
-
-</div>
-</div>
-<a id="a544c0845bf4b62feaba66bb8d8676ff2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a544c0845bf4b62feaba66bb8d8676ff2">&#9670;&nbsp;</a></span>vmec_get_gp_ti_pp()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_gp_ti_pp </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>y_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the ion temperature gp kernel value for the position and position. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#acdd822f6042f77c085ed93034101f7da">equilibrium::equilibrium_get_gp_ti_pp</a>. If no ion temperature profile was created zero is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>First cartesian position to get the ion temperature at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">y_cart</td><td>Second cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the gp kernel function for x_cart and y_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a3ad17ca9d56db446c89d054904b48de1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3ad17ca9d56db446c89d054904b48de1">&#9670;&nbsp;</a></span>vmec_get_grid_size()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_grid_size </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get radial grid size. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium::equilibrium_get_grid_size</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Size of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="ace80249dec941b94c117a7196bcc82ff"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ace80249dec941b94c117a7196bcc82ff">&#9670;&nbsp;</a></span>vmec_get_grid_start()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_grid_start </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get start of the radial grid. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a382a991c74aed8d63e537d6b49b66918">equilibrium::equilibrium_get_grid_start</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Start of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="a454861ad80f655ff10470f3de886e8a4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a454861ad80f655ff10470f3de886e8a4">&#9670;&nbsp;</a></span>vmec_get_grid_stop()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_grid_stop </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get radial grid size. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium::equilibrium_get_grid_size</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Size of the radial grid. </dd></dl>
-
-</div>
-</div>
-<a id="aa571272262c2461ad439aacedb13b505"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa571272262c2461ad439aacedb13b505">&#9670;&nbsp;</a></span>vmec_get_int_b_dphi()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_int_b_dphi </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>theta</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Gets the loop integrated magnetic field at a position. </p>
-<p>This method overrides equilibrium::equilibrium_get_Int_B_dphi. This computes Int[B*dl]</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>S position to integrate about. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>U angle to integrate about. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The loop integrated magnetic field at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="abe3de7ad61803dbba28dab86b6837f37"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abe3de7ad61803dbba28dab86b6837f37">&#9670;&nbsp;</a></span>vmec_get_magnetic_volume_jphigrid()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer vmec_equilibrium::vmec_get_magnetic_volume_jphigrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jphi grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ab796210f7567a4b026b031859fa1e6ee">equilibrium::equilibrium_get_magnetic_volume_jphigrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ab067c8fc0ce2d09f848418141935e64a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab067c8fc0ce2d09f848418141935e64a">&#9670;&nbsp;</a></span>vmec_get_magnetic_volume_jrgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer vmec_equilibrium::vmec_get_magnetic_volume_jrgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jr grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a4beab3efa39f5999f28f554b089a32d6">equilibrium::equilibrium_get_magnetic_volume_jrgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a13885bbe9a9ada9d7cb6273e37f45b16"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a13885bbe9a9ada9d7cb6273e37f45b16">&#9670;&nbsp;</a></span>vmec_get_magnetic_volume_jzgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer vmec_equilibrium::vmec_get_magnetic_volume_jzgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration jz grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae1aae7df78c798deb4408bc38acd2b62">equilibrium::equilibrium_get_magnetic_volume_jzgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a2f39021e1aa97b9da18694fe73dcee02"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2f39021e1aa97b9da18694fe73dcee02">&#9670;&nbsp;</a></span>vmec_get_magnetic_volume_rgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer vmec_equilibrium::vmec_get_magnetic_volume_rgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Get volume magnetic volume integration radial grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#adbb086288f87bedec9abed1d02888dfc">equilibrium::equilibrium_get_magnetic_volume_rgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="a153e659e6b4e31436d722f36140b416a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a153e659e6b4e31436d722f36140b416a">&#9670;&nbsp;</a></span>vmec_get_magnetic_volume_zgrid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:,:,:), pointer vmec_equilibrium::vmec_get_magnetic_volume_zgrid </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume magnetic volume integration z grid points. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a58181cf1609d1dafa8e377746b4aafe3">equilibrium::equilibrium_get_magnetic_volume_zgrid</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The radial grid points. </dd></dl>
-
-</div>
-</div>
-<a id="ac9a9ea000c5ccc3b0b0cefd663cef3cc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac9a9ea000c5ccc3b0b0cefd663cef3cc">&#9670;&nbsp;</a></span>vmec_get_ne_af()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">real (rprec) function, dimension(:), pointer vmec_equilibrium::vmec_get_ne_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density profile af array. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a9122ee41d8ac4a6c3358ce3d10dca3b5">equilibrium::equilibrium_get_ne_af</a>. If no density profile was created a null pointer is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron density profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="a5162748610407fdba4edfeede1c56400"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5162748610407fdba4edfeede1c56400">&#9670;&nbsp;</a></span>vmec_get_ne_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_ne_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ne. If no density profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a38dff7757255c7f94de65a1b177b7111"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a38dff7757255c7f94de65a1b177b7111">&#9670;&nbsp;</a></span>vmec_get_ne_radial()</h2>
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-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_ne_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron density at a s position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ne. If no density profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron density at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron density at s. </dd></dl>
-
-</div>
-</div>
-<a id="a28da0b909345dd8940e046c432624f54"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a28da0b909345dd8940e046c432624f54">&#9670;&nbsp;</a></span>vmec_get_p_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_p_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a7d6de6e41f3b42cbe5f9c720e9412abe"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d6de6e41f3b42cbe5f9c720e9412abe">&#9670;&nbsp;</a></span>vmec_get_p_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_p_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>normalize</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the plasma pressure at a s position. </p>
-<p>This method overrides equilibrium::equilibrium_get_p.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the plasma pressure at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">normalize</td><td>Normalize the pressure value. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The plasma pressure at s. </dd></dl>
-
-</div>
-</div>
-<a id="ad99dfb81ec8b7b93feb015307f54da24"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad99dfb81ec8b7b93feb015307f54da24">&#9670;&nbsp;</a></span>vmec_get_param_id()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_param_id </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>param_name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the id for a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a1ba4b1fcc75d9c108010f5d4d2ac841f">equilibrium::equilibrium_get_param_id</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">param_name</td><td>Name of a reconstruction parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The id for a reconstruction parameter. </dd></dl>
-
-</div>
-</div>
-<a id="abb8ca11d6f8a608eacd9b1bb6a807332"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abb8ca11d6f8a608eacd9b1bb6a807332">&#9670;&nbsp;</a></span>vmec_get_param_name()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character(len=data_name_length) function vmec_equilibrium::vmec_get_param_name </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the name of a reconstruction VMEC parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium::equilibrium_get_param_name</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The name of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a2e7e72b5b8ee7491814a08c3d401cc73"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2e7e72b5b8ee7491814a08c3d401cc73">&#9670;&nbsp;</a></span>vmec_get_param_value()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_param_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get the value of a reconstruction VMEC parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a9f245806e056deef11873271976af9eb">equilibrium::equilibrium_get_param_value</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The value of the parameter. </dd></dl>
-
-</div>
-</div>
-<a id="a32f4955dc924eecc897cc2a0a8183d79"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a32f4955dc924eecc897cc2a0a8183d79">&#9670;&nbsp;</a></span>vmec_get_plasma_edge()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">integer function vmec_equilibrium::vmec_get_plasma_edge </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>phi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>r</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), pointer&#160;</td>
-          <td class="paramname"><em>z</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the r and z positions of the outer surface at a toroidal angle. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium::equilibrium_get_plasma_edge</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>Toroidal angle to determine the outer surface at. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">r</td><td>The radial postions of the other surface in a single toroidal angle. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">z</td><td>The Z postions of the other surface in a single toroidal angle. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The number of elements in the r and z arrays. </dd></dl>
-
-</div>
-</div>
-<a id="ab972cec76da4119a8904190c6ef1c625"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab972cec76da4119a8904190c6ef1c625">&#9670;&nbsp;</a></span>vmec_get_s()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_s </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets VMEC s value at position. </p>
-<p>Converts from cartesian coordinates to VMEC's flux coordinates.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the s position at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The s position at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ab7b4ef3ae9bb37c5dbdac077d64a7f36"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab7b4ef3ae9bb37c5dbdac077d64a7f36">&#9670;&nbsp;</a></span>vmec_get_suv()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(3) vmec_equilibrium::vmec_get_suv </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets VMEC suv position. </p>
-<p>Converts from cartesian coordinates to vmec's flux coordinates.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the s position at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The s position at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a7532757e09dfbc0ca78c3d163febc265"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7532757e09dfbc0ca78c3d163febc265">&#9670;&nbsp;</a></span>vmec_get_sxrem_af()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer vmec_equilibrium::vmec_get_sxrem_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity profile af array. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a6e162c86fa7e87cd3a96f79bfb3e7c3d">equilibrium::equilibrium_get_sxrem_af</a>. If no temperature profile was created a null pointer is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron temperature profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="ad00c4e2bf2224cf441531722a6e73681"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad00c4e2bf2224cf441531722a6e73681">&#9670;&nbsp;</a></span>vmec_get_sxrem_cart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_sxrem_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_sxrem. If no soft x-ray emissivity profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="aad5f316f17dd9811f1aa5a9ee49b3e8a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aad5f316f17dd9811f1aa5a9ee49b3e8a">&#9670;&nbsp;</a></span>vmec_get_sxrem_radial()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_sxrem_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the soft x-ray emissivity at a s position. </p>
-<p>This method overrides equilibrium::equilibrium_get_sxrem. If no soft x-ray emissivity profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the soft x-ray emissivity at. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the soft x-ray emissivity profile. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The soft x-ray emissivity at s. </dd></dl>
-
-</div>
-</div>
-<a id="a81c07bed241bb1202b5f23aeb808713b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a81c07bed241bb1202b5f23aeb808713b">&#9670;&nbsp;</a></span>vmec_get_te_af()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer vmec_equilibrium::vmec_get_te_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature profile af array. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">equilibrium::equilibrium_get_te_af</a>. If no electron temperature profile was created a null pointer is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the electron temperature profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="a380b877fbbdf96daa86ae594a58aa57b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a380b877fbbdf96daa86ae594a58aa57b">&#9670;&nbsp;</a></span>vmec_get_te_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_te_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_te. If no electron temperature profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="ab4edfad818935e2d96e6a744df849a4b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab4edfad818935e2d96e6a744df849a4b">&#9670;&nbsp;</a></span>vmec_get_te_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_te_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the electron temperature at a s position. </p>
-<p>This method overrides equilibrium::equilibrium_get_te. If no electron temperature profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the electron temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The electron temperature at s. </dd></dl>
-
-</div>
-</div>
-<a id="aae0b8ad513228cd7ddcfe7b9b5db41c1"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aae0b8ad513228cd7ddcfe7b9b5db41c1">&#9670;&nbsp;</a></span>vmec_get_ti_af()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function, dimension(:), pointer vmec_equilibrium::vmec_get_ti_af </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature profile af array. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a407d4263b4a24d72f683f7beecff4620">equilibrium::equilibrium_get_ti_af</a>. If no ion temperature profile was created a null pointer is returned.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>Pointer to the ion temperature profile af array. </dd></dl>
-
-</div>
-</div>
-<a id="aefb1dc6ad97f59a8d75d60f2737f688c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aefb1dc6ad97f59a8d75d60f2737f688c">&#9670;&nbsp;</a></span>vmec_get_ti_cart()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_ti_cart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>x_cart</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a cartesian position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ti. If no ion temperature profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">x_cart</td><td>Cartesian position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at x_cart. </dd></dl>
-
-</div>
-</div>
-<a id="a7e33bef6e48cc1fd769a35b2b4a27699"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7e33bef6e48cc1fd769a35b2b4a27699">&#9670;&nbsp;</a></span>vmec_get_ti_radial()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_ti_radial </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>s</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets the ion temperature at a s position. </p>
-<p>This method overrides equilibrium::equilibrium_get_ti. If no ion temperature profile was created, return zero.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">s</td><td>Radial position to get the ion temperature at. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The ion temperature at s. </dd></dl>
-
-</div>
-</div>
-<a id="a65aae6ba7b821665a846416e2357bbde"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a65aae6ba7b821665a846416e2357bbde">&#9670;&nbsp;</a></span>vmec_get_type()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">character (len=data_name_length) function vmec_equilibrium::vmec_get_type </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Gets a discription of the equilibrium type. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A string describing the signal type. </dd></dl>
-
-</div>
-</div>
-<a id="a4a6605a691589a81726ff51783fb2a27"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4a6605a691589a81726ff51783fb2a27">&#9670;&nbsp;</a></span>vmec_get_volume_int_element()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">real (rprec) function vmec_equilibrium::vmec_get_volume_int_element </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Get volume integration element. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ac2027b4e4ea0c3c21baba1b57f5a2ddc">equilibrium::equilibrium_get_volume_int_element</a>. For vmec this is J*ds*du*dv where J is the jacobian. The jacobian is integrated into Jr, Jphi and Jz but still need to account for the sign of the jacobian.</p>
-<ul>
-<li>ds = 1/(ns - 1)</li>
-<li>du = 2*Pi/number of flux surfaces</li>
-<li>dv = 2*Pi/number of field periods/number of toroidal planes</li>
-</ul>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>The volume integration element. </dd></dl>
-
-</div>
-</div>
-<a id="afd8255c2b4d1657391a66f44f3b3245b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#afd8255c2b4d1657391a66f44f3b3245b">&#9670;&nbsp;</a></span>vmec_is_1d_array()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vmec_equilibrium::vmec_is_1d_array </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a 1d array. </p>
-<p>This method overrides equilibrium::equilibrium_is_1d_array.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a 1d array and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a8995179b2033cbddfa164b805aaeb406"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8995179b2033cbddfa164b805aaeb406">&#9670;&nbsp;</a></span>vmec_is_2d_array()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vmec_equilibrium::vmec_is_2d_array </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a 2d array. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a3d5e4a4eb04a0a8d93c090ebfdd8ce89">equilibrium::equilibrium_is_2d_array</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a 2d array and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a490bc87b33d05f0d697d3f9708e23a75"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a490bc87b33d05f0d697d3f9708e23a75">&#9670;&nbsp;</a></span>vmec_is_recon_param()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vmec_equilibrium::vmec_is_recon_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Checks if a parameter id is a reconstruction parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ab34978d83d0ca311e835f259912979e0">equilibrium::equilibrium_is_recon_param</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a reconstruction parameter and false if otherwise. </dd></dl>
-
-</div>
-</div>
-<a id="a383754a3291c20e5769e7cbcae3e79fd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a383754a3291c20e5769e7cbcae3e79fd">&#9670;&nbsp;</a></span>vmec_is_scaler_value()</h2>
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-<div class="memitem">
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-          <td class="memname">logical function vmec_equilibrium::vmec_is_scaler_value </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Checks if a parameter id is a scaler value. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a99a35f56d6a8d501f52c0b4ac8447a03">equilibrium::equilibrium_is_scaler_value</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the parameter is a scaler and false if otherwise. </dd></dl>
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-</div>
-</div>
-<a id="aed15211e86e828d27bd6fe2fb2b74ae2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aed15211e86e828d27bd6fe2fb2b74ae2">&#9670;&nbsp;</a></span>vmec_is_using_point()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">logical function vmec_equilibrium::vmec_is_using_point </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Checks if a the point magnetics are being used. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a7549affbf460dbc78e762e99b6ce58de">equilibrium::equilibrium_is_using_point</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>True if the point magnetic are being used. </dd></dl>
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-</div>
-</div>
-<a id="af32bc9eb29e352de8b798cc60e2e7627"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af32bc9eb29e352de8b798cc60e2e7627">&#9670;&nbsp;</a></span>vmec_read_vac_file()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_read_vac_file </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Loads the vacuum magnetic field file. </p>
-<p>Loads the vacuum magnetic field file. This will get on multiple processes to allow parallel loading of the mgrid file. The extcur array will need to be broadcast to the child processes.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Index of the changed current. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for VMEC. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a061ad2b9b7b412d4b7277cfabe513b64"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a061ad2b9b7b412d4b7277cfabe513b64">&#9670;&nbsp;</a></span>vmec_reset_boundary()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_reset_boundary </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Reset the fixed boundary coefficients. </p>
-<p>When changing the boundary coefficients, there is extra work that must be performed to set the VMEC state.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a57b943ab3a3657eb188595c753695219"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a57b943ab3a3657eb188595c753695219">&#9670;&nbsp;</a></span>vmec_reset_state()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_reset_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Reset the internal state of the equilibrium. </p>
-<p>Copies the saved VMEC state back to VMEC.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aff8a8dae3f1900d997af8f18d65c8ebd"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aff8a8dae3f1900d997af8f18d65c8ebd">&#9670;&nbsp;</a></span>vmec_restart()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_restart </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Restart vmec from the result file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a5d4f0e13ecadfc197de9c0c4efa47033">equilibrium::equilibrium_restart</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to write variables to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aeced22814edb5c90369367fe8ab1fcb0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aeced22814edb5c90369367fe8ab1fcb0">&#9670;&nbsp;</a></span>vmec_save_state()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_save_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Save the internal state of the equilibrium. </p>
-<p>Saves the VMEC state and the wout file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a08c1386909dadbb57c3b8988a8c7206e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a08c1386909dadbb57c3b8988a8c7206e">&#9670;&nbsp;</a></span>vmec_set_magnetic_cache_calc()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_set_magnetic_cache_calc </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Set magnetic cache initialy. </p>
-<p>After the equilibrium has been converged calculate the r, z, jr, jphi and jz on grid of s, u, v points.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000015">Todo:</a></b></dt><dd>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000016">Todo:</a></b></dt><dd>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000017">Todo:</a></b></dt><dd>FIXME: There is no reason to recompute the sine and cosine for the u component arrays every time. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000018">Todo:</a></b></dt><dd>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </dd></dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000019">Todo:</a></b></dt><dd>FIXME: There is no reason to recompute the sine and cosine for the u component arrays every time. </dd></dl>
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-</div>
-</div>
-<a id="a355d774feafc69fda582d6fe0269b828"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a355d774feafc69fda582d6fe0269b828">&#9670;&nbsp;</a></span>vmec_set_magnetic_cache_point()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine vmec_equilibrium::vmec_set_magnetic_cache_point </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>use_axi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Set magnetic cache initialy. </p>
-<p>This method overrides equilibrium::equilibrium_set_magnetic_cache. This allocates a <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> structure. Point measurements require no array allocations.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">use_axi</td><td>Magnetics can subtract off axisymmetric components. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a624f406b1f3e2bcf8ee8825061f98bbf"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a624f406b1f3e2bcf8ee8825061f98bbf">&#9670;&nbsp;</a></span>vmec_set_magnetic_cache_response()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_set_magnetic_cache_response </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">type (<a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>response_object</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Set magnetic cache for plasma resonce. </p>
-<p>This method overrides equilibrium::equilibrium_set_magnetic_cache. This allocates a <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> structure. Point measurements require no array allocations.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">response_object</td><td>A <a class="el" href="structmagnetic__response_1_1magnetic__response__class.html">magnetic_response::magnetic_response_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ac1c8619aa312f52d85ac59c1ee0befe8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac1c8619aa312f52d85ac59c1ee0befe8">&#9670;&nbsp;</a></span>vmec_set_namelist()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_set_namelist </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Sets namelist variables from the solved VMEC equilibrium. </p>
-<p>This method updates the boundary and magnetic axis coefficients in the namelist input file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a08a558e21fb005492c9c4102dfa80ebc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a08a558e21fb005492c9c4102dfa80ebc">&#9670;&nbsp;</a></span>vmec_set_param()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_set_param </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>id</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>i_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>j_index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>value</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>eq_comm</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>state_flags</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
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-
-<p>Sets the value of a reconstruction equilibrium parameter. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium::equilibrium_set_param</a>. When a VMEC parameter is changed, propagate the changes to the VMEC internal state and inform the caller that the equilibrium needs reconvergence.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">id</td><td>ID of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">i_index</td><td>The ith index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">j_index</td><td>The jth index of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">value</td><td>The value of the parameter. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator for the child equilibrium processes. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000014">Todo:</a></b></dt><dd>FIXME: Consider throwing a fatal error here instead of silently doing nothing. </dd></dl>
-
-</div>
-</div>
-<a id="ae90a5479a5b49f344dd06bd649e1a18b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae90a5479a5b49f344dd06bd649e1a18b">&#9670;&nbsp;</a></span>vmec_sync_child()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_sync_child </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>index</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize a child vmec state to the parent. </p>
-<p>Syncs data between a child and the parent process. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">index</td><td>Reconstruction rank to sync. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a8fd9cef3fc180dadb977b7a797b2b698"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8fd9cef3fc180dadb977b7a797b2b698">&#9670;&nbsp;</a></span>vmec_sync_state()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_sync_state </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>recon_comm</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Syncronize the vmec state to children. </p>
-<p>Syncs data between the parent and child processes. If MPI support is not compiled in this subroutine reduces to a no op.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator for the reconstruction processes. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aea915707bad2fe421dc8a77c2d537932"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aea915707bad2fe421dc8a77c2d537932">&#9670;&nbsp;</a></span>vmec_write()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_write </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>iou</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write out the equilibrium to an output file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a52fe0a7f6fe457ba1e1397c04bea5d41">equilibrium::equilibrium_write</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit of the output file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af2834de9b8119aa4a0e70250df21e96a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af2834de9b8119aa4a0e70250df21e96a">&#9670;&nbsp;</a></span>vmec_write_init_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_write_init_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write inital data to NetCDF result file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#acd20e3a5ae2c924b620d654c076dc81e">equilibrium::equilibrium_write_init_data</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a3949073a7d7ce5b9b7365d8806e99f59"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a3949073a7d7ce5b9b7365d8806e99f59">&#9670;&nbsp;</a></span>vmec_write_input()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_write_input </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write the current valid input. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a84e1df0703c7493f444fa5dc0a392d34">equilibrium::equilibrium_write_input</a>. The boundary and other fixed parameters do not get updated as the reconstruction progresses. Need to update them manually if in free boundary mode.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step number to append to input filename. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a84eefb3c064582b6c393f00a5a7dce78"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a84eefb3c064582b6c393f00a5a7dce78">&#9670;&nbsp;</a></span>vmec_write_step_data()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_equilibrium::vmec_write_step_data </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>this</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>result_ncid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>current_step</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Write step data to NetCDF result file. </p>
-<p>This method overrides <a class="el" href="namespaceequilibrium.html#a502ea3221e3de780f53e85f8832eca33">equilibrium::equilibrium_write_step_data</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">this</td><td>A <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">result_ncid</td><td>NetCDF file id of the result file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">current_step</td><td>Step index to write variables to. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
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-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">vmec_file Module Reference</div>  </div>
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-
-<p>Defines the base class of the type <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>. This contains the output of a vmec equilibrium.  
-<a href="namespacevmec__file.html#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a vmec output.  <a href="structvmec__file_1_1vmec__file__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a2a134b867ea82ff10671fb3d656966f8"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__file.html#a2a134b867ea82ff10671fb3d656966f8">vmec_file_construct</a> (vmec_file_name)</td></tr>
-<tr class="memdesc:a2a134b867ea82ff10671fb3d656966f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object.  <a href="namespacevmec__file.html#a2a134b867ea82ff10671fb3d656966f8">More...</a><br /></td></tr>
-<tr class="separator:a2a134b867ea82ff10671fb3d656966f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a80c64481e8fa94dbe54b34b7315f11bc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__file.html#a80c64481e8fa94dbe54b34b7315f11bc">vmec_file_destruct</a> (this)</td></tr>
-<tr class="memdesc:a80c64481e8fa94dbe54b34b7315f11bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object.  <a href="namespacevmec__file.html#a80c64481e8fa94dbe54b34b7315f11bc">More...</a><br /></td></tr>
-<tr class="separator:a80c64481e8fa94dbe54b34b7315f11bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Defines the base class of the type <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>. This contains the output of a vmec equilibrium. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a2a134b867ea82ff10671fb3d656966f8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2a134b867ea82ff10671fb3d656966f8">&#9670;&nbsp;</a></span>vmec_file_construct()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>) function, pointer vmec_file::vmec_file_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>vmec_file_name</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object with an siesta restart file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec_file_name</td><td>File name for vacuum fields. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object. </dd></dl>
-
-</div>
-</div>
-<a id="a80c64481e8fa94dbe54b34b7315f11bc"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a80c64481e8fa94dbe54b34b7315f11bc">&#9670;&nbsp;</a></span>vmec_file_destruct()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine vmec_file::vmec_file_destruct </td>
-          <td>(</td>
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-<p>Deallocates memory and uninitializes a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object.</p>
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-  <table class="params">
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-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
-  <div class="headertitle">
-<div class="title">vmec_input Module Reference</div>  </div>
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-<p>This file contains all the variables for a VMEC namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs.  
-<a href="namespacevmec__input.html#details">More...</a></p>
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-<tr class="memdesc:a9e884375c83f4df99b09234573dae7e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of iterations to run after the preconditoner is activated. <br /></td></tr>
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-<tr class="memdesc:a6aaf949325c7cad6ef734c73897b1eb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time index value to label the output files. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a8c41130955e25f6268587e769ca668eb">nvacskip</a></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#acfe484dfe2745965f6ea403fc093211d">delt</a></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a12e6ea94c7c9767b9b080367fbbd7d58">lgiveup</a></td></tr>
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-<tr class="memdesc:aeee8ba3ec36bdee5af9386d3c974217c"><td class="mdescLeft">&#160;</td><td class="mdescRight">UNKNOWN. <br /></td></tr>
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-<tr class="memdesc:aa44376c0bdcded8b56e0fe70c11c6553"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allow non-stellarator symmetric terms. <br /></td></tr>
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-<tr class="memdesc:a10a6fb946588f8a10c060c4fa118b01a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Run in RFP mode. <br /></td></tr>
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-<tr class="memdesc:ab151be07a1d183aa2b518ad3de7c9aa2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use text output when writting wout files. <br /></td></tr>
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-<tr class="memdesc:a62905ea9c2036d628d902ede954da108"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out full threed1 file if force tolarance is not met. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a36fb0329a69072940e10f7482eedc9ba">l_v3fit</a></td></tr>
-<tr class="memdesc:a36fb0329a69072940e10f7482eedc9ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">VMEC called from inside v3fit. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a5edab550626b061c25f8f9cee7ff4984">lnyquist</a></td></tr>
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-<tr class="memdesc:af13b8bf7b06354a9aa444782a1d4207b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial surface redistribution factors. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a></td></tr>
-<tr class="memdesc:ad23b27aa1648d81036ade421ef1a0944"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of poloidal modes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a2db2a2c181b423ace37600fd6b49820a">ntheta</a></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#acdf327762893b41f2bbe147f5825e396">nzeta</a></td></tr>
-<tr class="memdesc:acdf327762893b41f2bbe147f5825e396"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of toroidal grid points. <br /></td></tr>
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-<tr class="memitem:a2a939cc67d1bd46be74f843de71a6b0e"><td class="memItemLeft" align="right" valign="top"><a id="a2a939cc67d1bd46be74f843de71a6b0e"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a2a939cc67d1bd46be74f843de71a6b0e">lfreeb</a></td></tr>
-<tr class="memdesc:a2a939cc67d1bd46be74f843de71a6b0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use external fields to determine the boundary shape. <br /></td></tr>
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-<tr class="memitem:af26e121e53eae32bc88ceaade7c767d6"><td class="memItemLeft" align="right" valign="top"><a id="af26e121e53eae32bc88ceaade7c767d6"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#af26e121e53eae32bc88ceaade7c767d6">ncurr</a></td></tr>
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-<tr class="memdesc:a498f47d198fd1d6d8b4610b5baee1c8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameterized current profile coefficents. <br /></td></tr>
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-<tr class="memdesc:a9ec244c7cffbffd75b564a47d9d17c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial knot position for the current profile splines. <br /></td></tr>
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-<tr class="memitem:a93ef97daaf0d372f7c9899f3d99f46a6"><td class="memItemLeft" align="right" valign="top"><a id="a93ef97daaf0d372f7c9899f3d99f46a6"></a>
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-<tr class="memdesc:a93ef97daaf0d372f7c9899f3d99f46a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Knot amplitudes for the current profile splines. <br /></td></tr>
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-<div class="textblock"><p>This file contains all the variables for a VMEC namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. </p>
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-<tr class="memdesc:a89b1a8554855aa3d6f3c63b2eb69bfab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a real valued 2D array.  <a href="namespacenetcdf__inc.html#a89b1a8554855aa3d6f3c63b2eb69bfab">More...</a><br /></td></tr>
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-<tr class="memdesc:abaaa08a79d7e9236dd9050e81966c6cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a 32bit complex value.  <a href="namespacenetcdf__inc.html#abaaa08a79d7e9236dd9050e81966c6cd">More...</a><br /></td></tr>
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-<tr class="memdesc:a1ca6a5e3768d1d4ab24389a41b50d73e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a 32bit complex valued array.  <a href="namespacenetcdf__inc.html#a1ca6a5e3768d1d4ab24389a41b50d73e">More...</a><br /></td></tr>
-<tr class="separator:a1ca6a5e3768d1d4ab24389a41b50d73e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a5b82be61a5d3d1d38c68a639f0ed2c22"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a 32bit complex valued 2D array.  <a href="namespacenetcdf__inc.html#a5b82be61a5d3d1d38c68a639f0ed2c22">More...</a><br /></td></tr>
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-<tr class="memdesc:a47c9bf8b575c1c4299bbba553625b4a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a 32bit complex valued 3D array.  <a href="namespacenetcdf__inc.html#a47c9bf8b575c1c4299bbba553625b4a6">More...</a><br /></td></tr>
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-<tr class="memdesc:af621a406987df5f3e5ea6025235793d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an integer value.  <a href="namespacenetcdf__inc.html#af621a406987df5f3e5ea6025235793d7">More...</a><br /></td></tr>
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-<tr class="memdesc:a3d85f5401b73580fbd6d664e21303ffa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an integer valued array.  <a href="namespacenetcdf__inc.html#a3d85f5401b73580fbd6d664e21303ffa">More...</a><br /></td></tr>
-<tr class="separator:a3d85f5401b73580fbd6d664e21303ffa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a7daf4d77220998a09b8580f7c7401f6b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an integer valued 2D array.  <a href="namespacenetcdf__inc.html#a7daf4d77220998a09b8580f7c7401f6b">More...</a><br /></td></tr>
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-<tr class="separator:a1e1f025dccc58c997110da587d4efa08"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a85cb7a6aed14173322953da8c9a6fe79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a text valued array.  <a href="namespacenetcdf__inc.html#a85cb7a6aed14173322953da8c9a6fe79">More...</a><br /></td></tr>
-<tr class="separator:a85cb7a6aed14173322953da8c9a6fe79"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad55b9f56ec5e2959bbe41a4405c63173"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad55b9f56ec5e2959bbe41a4405c63173">netcdf_inc::nf_put_att_text</a> (ncid, varid, name, length, text)</td></tr>
-<tr class="memdesc:ad55b9f56ec5e2959bbe41a4405c63173"><td class="mdescLeft">&#160;</td><td class="mdescRight">Put an text attribute.  <a href="namespacenetcdf__inc.html#ad55b9f56ec5e2959bbe41a4405c63173">More...</a><br /></td></tr>
-<tr class="separator:ad55b9f56ec5e2959bbe41a4405c63173"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acced04d6c828f5341f13d792092e71f8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#acced04d6c828f5341f13d792092e71f8">netcdf_inc::nf_put_att_double</a> (ncid, varid, name, xtype, length, dvals)</td></tr>
-<tr class="memdesc:acced04d6c828f5341f13d792092e71f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Put an double attribute.  <a href="namespacenetcdf__inc.html#acced04d6c828f5341f13d792092e71f8">More...</a><br /></td></tr>
-<tr class="separator:acced04d6c828f5341f13d792092e71f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e28c0d9797d80eecc8555176b9be49d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a1e28c0d9797d80eecc8555176b9be49d">netcdf_inc::nf_put_att_real</a> (ncid, varid, name, xtype, length, rvals)</td></tr>
-<tr class="memdesc:a1e28c0d9797d80eecc8555176b9be49d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Put an real attribute.  <a href="namespacenetcdf__inc.html#a1e28c0d9797d80eecc8555176b9be49d">More...</a><br /></td></tr>
-<tr class="separator:a1e28c0d9797d80eecc8555176b9be49d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a6f1396faaf917b0712cdf199b2c1d2a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a6f1396faaf917b0712cdf199b2c1d2a8">More...</a><br /></td></tr>
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-<tr class="memitem:a0f811b4a3aae119897db4219d5652e2e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a0f811b4a3aae119897db4219d5652e2e">netcdf_inc::nf_put_var_2d_double</a> (ncid, varid, dvals)</td></tr>
-<tr class="memdesc:a0f811b4a3aae119897db4219d5652e2e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a double valued 2D array.  <a href="namespacenetcdf__inc.html#a0f811b4a3aae119897db4219d5652e2e">More...</a><br /></td></tr>
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-<tr class="memitem:a29a59d5117872e5f4bf3751bfdac3571"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a29a59d5117872e5f4bf3751bfdac3571">netcdf_inc::nf_put_var_3d_double</a> (ncid, varid, dvals)</td></tr>
-<tr class="memdesc:a29a59d5117872e5f4bf3751bfdac3571"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double valued 3D array.  <a href="namespacenetcdf__inc.html#a29a59d5117872e5f4bf3751bfdac3571">More...</a><br /></td></tr>
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-<tr class="memitem:ae2984dcf09f9c056b21e47e82e49b374"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ae2984dcf09f9c056b21e47e82e49b374">netcdf_inc::nf_put_var_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:ae2984dcf09f9c056b21e47e82e49b374"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex value.  <a href="namespacenetcdf__inc.html#ae2984dcf09f9c056b21e47e82e49b374">More...</a><br /></td></tr>
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-<tr class="memitem:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad56f9c003fcc788c8f22d1ad3da220d0">netcdf_inc::nf_put_var_1d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued array.  <a href="namespacenetcdf__inc.html#ad56f9c003fcc788c8f22d1ad3da220d0">More...</a><br /></td></tr>
-<tr class="separator:ad56f9c003fcc788c8f22d1ad3da220d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a1a6fd75cd094cc4b5d07aa68586a5284">netcdf_inc::nf_put_var_2d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued 2D array.  <a href="namespacenetcdf__inc.html#a1a6fd75cd094cc4b5d07aa68586a5284">More...</a><br /></td></tr>
-<tr class="separator:a1a6fd75cd094cc4b5d07aa68586a5284"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a362154743c93a55597e0f06dee16d507"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a362154743c93a55597e0f06dee16d507">netcdf_inc::nf_put_var_3d_cpx_double</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a362154743c93a55597e0f06dee16d507"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 64bit complex valued 3D array.  <a href="namespacenetcdf__inc.html#a362154743c93a55597e0f06dee16d507">More...</a><br /></td></tr>
-<tr class="separator:a362154743c93a55597e0f06dee16d507"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad134c34cd4738e31b73af6384a64feed"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad134c34cd4738e31b73af6384a64feed">netcdf_inc::nf_put_vara_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:ad134c34cd4738e31b73af6384a64feed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#ad134c34cd4738e31b73af6384a64feed">More...</a><br /></td></tr>
-<tr class="separator:ad134c34cd4738e31b73af6384a64feed"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a6dd951ec6b0e8fbe343d1b5fa67a028d">netcdf_inc::nf_put_vara_2d_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a6dd951ec6b0e8fbe343d1b5fa67a028d">More...</a><br /></td></tr>
-<tr class="separator:a6dd951ec6b0e8fbe343d1b5fa67a028d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a431fcf28932f65ad9c4c8f2f069fe9a5">netcdf_inc::nf_put_vara_3d_double</a> (ncid, varid, start, count, dvals)</td></tr>
-<tr class="memdesc:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a431fcf28932f65ad9c4c8f2f069fe9a5">More...</a><br /></td></tr>
-<tr class="separator:a431fcf28932f65ad9c4c8f2f069fe9a5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad00350de3643ca25e0558f1e8fb88bdd"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad00350de3643ca25e0558f1e8fb88bdd">netcdf_inc::nf_put_vara_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:ad00350de3643ca25e0558f1e8fb88bdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex double value.  <a href="namespacenetcdf__inc.html#ad00350de3643ca25e0558f1e8fb88bdd">More...</a><br /></td></tr>
-<tr class="separator:ad00350de3643ca25e0558f1e8fb88bdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#aad0da7452ac67d014e1e0d3b44b8e99a">netcdf_inc::nf_put_vara_2d_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a complex double value.  <a href="namespacenetcdf__inc.html#aad0da7452ac67d014e1e0d3b44b8e99a">More...</a><br /></td></tr>
-<tr class="separator:aad0da7452ac67d014e1e0d3b44b8e99a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64eb0305bc346583635753ff4f70f2b0"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a64eb0305bc346583635753ff4f70f2b0">netcdf_inc::nf_put_vara_3d_cpx_double</a> (ncid, varid, start, count, cvals)</td></tr>
-<tr class="memdesc:a64eb0305bc346583635753ff4f70f2b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a double value.  <a href="namespacenetcdf__inc.html#a64eb0305bc346583635753ff4f70f2b0">More...</a><br /></td></tr>
-<tr class="separator:a64eb0305bc346583635753ff4f70f2b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac73ad95526fd93d3716ed06a821f925"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#aac73ad95526fd93d3716ed06a821f925">netcdf_inc::nf_put_var_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:aac73ad95526fd93d3716ed06a821f925"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real value.  <a href="namespacenetcdf__inc.html#aac73ad95526fd93d3716ed06a821f925">More...</a><br /></td></tr>
-<tr class="separator:aac73ad95526fd93d3716ed06a821f925"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0ae9d601f2077ab7ace3466a94b44be2"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a0ae9d601f2077ab7ace3466a94b44be2">netcdf_inc::nf_put_var_1d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:a0ae9d601f2077ab7ace3466a94b44be2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real valued array.  <a href="namespacenetcdf__inc.html#a0ae9d601f2077ab7ace3466a94b44be2">More...</a><br /></td></tr>
-<tr class="separator:a0ae9d601f2077ab7ace3466a94b44be2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad5981df591f7c712a2a9d2ba9ad639be"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#ad5981df591f7c712a2a9d2ba9ad639be">netcdf_inc::nf_put_var_2d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:ad5981df591f7c712a2a9d2ba9ad639be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read a real valued 2D array.  <a href="namespacenetcdf__inc.html#ad5981df591f7c712a2a9d2ba9ad639be">More...</a><br /></td></tr>
-<tr class="separator:ad5981df591f7c712a2a9d2ba9ad639be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a07eec7e7a01aff5cc3c0a9c7335734cd">netcdf_inc::nf_put_var_3d_real</a> (ncid, varid, rvals)</td></tr>
-<tr class="memdesc:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a real valued 3D array.  <a href="namespacenetcdf__inc.html#a07eec7e7a01aff5cc3c0a9c7335734cd">More...</a><br /></td></tr>
-<tr class="separator:a07eec7e7a01aff5cc3c0a9c7335734cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84968aae2c550659ed59042d657ea6f4"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a84968aae2c550659ed59042d657ea6f4">netcdf_inc::nf_put_var_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a84968aae2c550659ed59042d657ea6f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex value.  <a href="namespacenetcdf__inc.html#a84968aae2c550659ed59042d657ea6f4">More...</a><br /></td></tr>
-<tr class="separator:a84968aae2c550659ed59042d657ea6f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a51a993a010f843df1478697b88b541b8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a51a993a010f843df1478697b88b541b8">netcdf_inc::nf_put_var_1d_cpx_real</a> (ncid, varid, cvals)</td></tr>
-<tr class="memdesc:a51a993a010f843df1478697b88b541b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write a 32bit complex valued array.  <a href="namespacenetcdf__inc.html#a51a993a010f843df1478697b88b541b8">More...</a><br /></td></tr>
-<tr class="separator:a51a993a010f843df1478697b88b541b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4795f3324c22c204f904523ca5b9891e"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacenetcdf__inc.html#a4795f3324c22c204f904523ca5b9891e">netcdf_inc::nf_put_var_2d_cpx_real</a> (ncid, varid, cvals)</td></tr>
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-<a href="#namespaces">Modules</a> &#124;
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-<div class="title">pchelms.f90 File Reference</div>  </div>
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-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacepchelms.html">pchelms</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
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-<tr class="memitem:namespacepchelms"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html">pchelms</a></td></tr>
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-<tr class="memdesc:aec5cddc82bbffdf9a2c6e96d607ba90e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute real-space components of contravariant jac*B^i on half radial grid from curl(A).  <a href="namespacepchelms.html#aec5cddc82bbffdf9a2c6e96d607ba90e">More...</a><br /></td></tr>
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-<tr class="memitem:a5c588539b11ef597d1f30c6397af78a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a5c588539b11ef597d1f30c6397af78a6">pchelms::curlb_pchelms</a> (ksupsmnf, ksupumnf, ksupvmnf, asubsmnf,</td></tr>
-<tr class="memdesc:a5c588539b11ef597d1f30c6397af78a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute real-space components of contravariant jac*J^i on full radial grid from curl(B).  <a href="namespacepchelms.html#a5c588539b11ef597d1f30c6397af78a6">More...</a><br /></td></tr>
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-<tr class="memdesc:a3e988318d4f7538797336068e91fe5fa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert cylindical vector potential to contravariant components.  <a href="namespacepchelms.html#a3e988318d4f7538797336068e91fe5fa">More...</a><br /></td></tr>
-<tr class="separator:a3e988318d4f7538797336068e91fe5fa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a055dc5013104e1119dcfd6c8b99b65c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a165514a8e63c16e7afd2f4404e4c03ad"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a165514a8e63c16e7afd2f4404e4c03ad">pchelms::init_a</a> (cA_s, cA_u, cA_v, A_s, A_u, A_v, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:a165514a8e63c16e7afd2f4404e4c03ad"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize vector potential.  <a href="namespacepchelms.html#a165514a8e63c16e7afd2f4404e4c03ad">More...</a><br /></td></tr>
-<tr class="separator:a165514a8e63c16e7afd2f4404e4c03ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aac5e7cf44bc7d222874c152b0dce61b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a1bac7a0e1bf89a7618e5a0092eca9856"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compare Curl(Curl(A)) with the expected VMEC and vacuum currents.  <a href="namespacepchelms.html#a1bac7a0e1bf89a7618e5a0092eca9856">More...</a><br /></td></tr>
-<tr class="separator:a1bac7a0e1bf89a7618e5a0092eca9856"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a11fde1f18d2db817c31be925702ca27a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepchelms.html#a11fde1f18d2db817c31be925702ca27a">pchelms::dump_b</a> (js, iunit)</td></tr>
-<tr class="memdesc:a11fde1f18d2db817c31be925702ca27a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out magnetic field to file.  <a href="namespacepchelms.html#a11fde1f18d2db817c31be925702ca27a">More...</a><br /></td></tr>
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-<tr class="separator:a6cae02545c78f51ab7c3841373b05c55"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a835b9933774c798db9d3af83abd8f811"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab999d3174651fcdde4208231de35279c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Serial callback function for MatVec GMRES routine.  <a href="namespacepchelms.html#ab999d3174651fcdde4208231de35279c">More...</a><br /></td></tr>
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-<tr class="memdesc:afc36a9db8401258f3d4e3b6415e6dfda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parallel callback function for MatVec GMRES routine.  <a href="namespacepchelms.html#afc36a9db8401258f3d4e3b6415e6dfda">More...</a><br /></td></tr>
-<tr class="separator:afc36a9db8401258f3d4e3b6415e6dfda"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aad89a7b4e5adb8613efe6fa04700598a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacepchelms.html">pchelms</a>. </p>
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-<p>Contains module pprofile_T.  
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpprofile__t_1_1pprofile__pointer.html">pprofile_t::pprofile_pointer</a></td></tr>
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-<tr class="separator:a10f804e2272a8795fe7a843dfd4b0d63"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a4a8b9c655983bbaec1274a7a724f638e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21ef1957521ac33d669105dda3c0c1a0"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a21ef1957521ac33d669105dda3c0c1a0">pprofile_t::pprofile_get_gp_pi</a> (this, p, i)</td></tr>
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-<tr class="separator:a21ef1957521ac33d669105dda3c0c1a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af30a8e6d63ca54c1274afa9e0f157c08"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75711e82e59ad6c5fc3d9fbf6330d474"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a75711e82e59ad6c5fc3d9fbf6330d474">pprofile_t::pprofile_get_gp_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a75711e82e59ad6c5fc3d9fbf6330d474"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of hyper parameters for guassian process kernel.  <a href="namespacepprofile__t.html#a75711e82e59ad6c5fc3d9fbf6330d474">More...</a><br /></td></tr>
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-<tr class="memdesc:abc9605e5463c1559316fa5b38d708330"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the one dimensional squared exponential kernel.  <a href="namespacepprofile__t.html#abc9605e5463c1559316fa5b38d708330">More...</a><br /></td></tr>
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-<tr class="memdesc:a067ecbe88c417aeec34a6c034695f0ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the one dimensional squared exponential kernel.  <a href="namespacepprofile__t.html#a067ecbe88c417aeec34a6c034695f0ff">More...</a><br /></td></tr>
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-integer, parameter, public&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacepprofile__t.html#a051c0f0cb6180d07046287ca81845e07">pprofile_t::iub_asf</a> = 101</td></tr>
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-<div class="textblock"><p>Contains module pprofile_T. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-</div>
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-<div class="header">
-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
-<a href="#namespaces">Modules</a> &#124;
-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">primed_grid.f File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains module <a class="el" href="namespaceprimed__grid.html">primed_grid</a>.  
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-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a5418ac7b1982c948e232534948304c01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a5418ac7b1982c948e232534948304c01">More...</a><br /></td></tr>
-<tr class="separator:a5418ac7b1982c948e232534948304c01"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4eedac0cc0a8f9cbe1719f6998ecd3a8"><td class="memItemLeft" align="right" valign="top">type(primed_grid_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a4eedac0cc0a8f9cbe1719f6998ecd3a8">primed_grid::primed_grid_construct</a> (num_v, flags, vmec, vmec_vac_file, siesta_file_name, parallel, io_unit)</td></tr>
-<tr class="memdesc:a4eedac0cc0a8f9cbe1719f6998ecd3a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a4eedac0cc0a8f9cbe1719f6998ecd3a8">More...</a><br /></td></tr>
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-<tr class="memdesc:ad709f0120cee7f9a6808c607f22f80eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#ad709f0120cee7f9a6808c607f22f80eb">More...</a><br /></td></tr>
-<tr class="separator:ad709f0120cee7f9a6808c607f22f80eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a11bcd75bf5333367a181bb27f7b0eb7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a11bcd75bf5333367a181bb27f7b0eb7e">More...</a><br /></td></tr>
-<tr class="separator:a11bcd75bf5333367a181bb27f7b0eb7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="memItemLeft" align="right" valign="top">class(primed_grid_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a6cfab84b2d1a7fa7e9814a8d5d836445">primed_grid::primed_grid_construct_jv</a> (num_v, vmec, parallel)</td></tr>
-<tr class="memdesc:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a6cfab84b2d1a7fa7e9814a8d5d836445">More...</a><br /></td></tr>
-<tr class="separator:a6cfab84b2d1a7fa7e9814a8d5d836445"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a02df21a51214feb456ac82a14473eb64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a02df21a51214feb456ac82a14473eb64">More...</a><br /></td></tr>
-<tr class="separator:a02df21a51214feb456ac82a14473eb64"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1d18e979c0c657b0e1e5527184387b98"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprimed__grid.html#a1d18e979c0c657b0e1e5527184387b98">primed_grid::primed_grid_destruct</a> (this)</td></tr>
-<tr class="memdesc:a1d18e979c0c657b0e1e5527184387b98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object.  <a href="namespaceprimed__grid.html#a1d18e979c0c657b0e1e5527184387b98">More...</a><br /></td></tr>
-<tr class="separator:a1d18e979c0c657b0e1e5527184387b98"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceprimed__grid.html">primed_grid</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
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-<p>Contains module <a class="el" href="namespaceprior__gaussian.html" title="Defines the base class of the type prior_gaussian_class. This class implements priors of the type.">prior_gaussian</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:namespaceprior__gaussian"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defines the base class of the type <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a>. This class implements priors of the type. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="memItemLeft" align="right" valign="top">class(prior_gaussian_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a7d034a9e2a3cf1cd7be08e9aac69dd09">prior_gaussian::prior_gaussian_construct</a> (a_model, param_name, indices)</td></tr>
-<tr class="memdesc:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.  <a href="namespaceprior__gaussian.html#a7d034a9e2a3cf1cd7be08e9aac69dd09">More...</a><br /></td></tr>
-<tr class="separator:a7d034a9e2a3cf1cd7be08e9aac69dd09"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a451bef4ea3caf5746de01d22547b12a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian_class</a> object.  <a href="namespaceprior__gaussian.html#a451bef4ea3caf5746de01d22547b12a0">More...</a><br /></td></tr>
-<tr class="separator:a451bef4ea3caf5746de01d22547b12a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#aa2303aa811e1f1d8b44f51d38d58f8a0">prior_gaussian::prior_gaussian_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled signal.  <a href="namespaceprior__gaussian.html#aa2303aa811e1f1d8b44f51d38d58f8a0">More...</a><br /></td></tr>
-<tr class="separator:aa2303aa811e1f1d8b44f51d38d58f8a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21dc4528c76f30db022326b0f689850f"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a21dc4528c76f30db022326b0f689850f">prior_gaussian::prior_gaussian_get_type</a> (this)</td></tr>
-<tr class="memdesc:a21dc4528c76f30db022326b0f689850f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the prior type.  <a href="namespaceprior__gaussian.html#a21dc4528c76f30db022326b0f689850f">More...</a><br /></td></tr>
-<tr class="separator:a21dc4528c76f30db022326b0f689850f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d">prior_gaussian::prior_gaussian_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a position.  <a href="namespaceprior__gaussian.html#a55d2bfaa0b9774334e42644c9b9ea88d">More...</a><br /></td></tr>
-<tr class="separator:a55d2bfaa0b9774334e42644c9b9ea88d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e704a538a4729081b56bc144a05531d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d">prior_gaussian::prior_gaussian_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:a9e704a538a4729081b56bc144a05531d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a signal.  <a href="namespaceprior__gaussian.html#a9e704a538a4729081b56bc144a05531d">More...</a><br /></td></tr>
-<tr class="separator:a9e704a538a4729081b56bc144a05531d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40dde86d1f4794b3bc33005362d30c30"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30">prior_gaussian::prior_gaussian_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:a40dde86d1f4794b3bc33005362d30c30"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a prior signal and a cartesian position.  <a href="namespaceprior__gaussian.html#a40dde86d1f4794b3bc33005362d30c30">More...</a><br /></td></tr>
-<tr class="separator:a40dde86d1f4794b3bc33005362d30c30"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8">prior_gaussian::prior_gaussian_write_auxiliary</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out auxiliary signal information to an output file.  <a href="namespaceprior__gaussian.html#abac0352db48dbbc0a19808ad5ffa8ac8">More...</a><br /></td></tr>
-<tr class="separator:abac0352db48dbbc0a19808ad5ffa8ac8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespaceprior__gaussian.html" title="Defines the base class of the type prior_gaussian_class. This class implements priors of the type.">prior_gaussian</a>. </p>
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diff --git a/html/profile_sec.html b/html/profile_sec.html
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-<div class="title">Profiles types. </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#profile_namelist_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#profile_types_sec">Profile types</a><ul><li class="level2"><a href="#profile_none">none</a></li>
-<li class="level2"><a href="#profile_two_power">two_power</a></li>
-<li class="level2"><a href="#profile_two_power_gs">two_power_gs</a></li>
-<li class="level2"><a href="#profile_two_power_r">two_power_r</a></li>
-<li class="level2"><a href="#profile_power_series_gs">power_series</a></li>
-<li class="level2"><a href="#profile_cubic_spline">cubic_spline</a></li>
-<li class="level2"><a href="#profile_akima_spline">akima_spline</a></li>
-<li class="level2"><a href="#profile_line_segment">line_segment</a></li>
-<li class="level2"><a href="#profile_sq_ecp">sq_exp_1d</a></li>
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-</li>
-</ul>
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-<div class="textblock"><h1><a class="anchor" id="profile_namelist_intro_sec"></a>
-Introduction</h1>
-<p>This page contains discriptions of the types of profiles that can be used for parameterized profiles. Profiles are tagged in the <a class="el" href="namelist_sec.html#model_profile_sec">Model profile specification</a>, as <code>pp_*_</code> where <code>*</code> refers to the specific profile.</p>
-<h1><a class="anchor" id="profile_types_sec"></a>
-Profile types</h1>
-<p>Profiles can be defined as any of the following types.</p>
-<h2><a class="anchor" id="profile_none"></a>
-none</h2>
-<p><code>none</code> No profile is used in this instance.</p>
-<h2><a class="anchor" id="profile_two_power"></a>
-two_power</h2>
-<p><code>'two_power'</code> Profile is defined as a two power poly nomical with 4 coeffiecents. Coefficients are defined as in the first 4 indicies of the <code>'_b'</code> array. The profile is defined as follows.</p>
-<p>a(x) = b[0] + b[1]*(1 - x^b[2])^b[3]</p>
-<p>where x is valid from zero to one.</p>
-<h2><a class="anchor" id="profile_two_power_gs"></a>
-two_power_gs</h2>
-<p><code>'two_power_gs'</code> Profile is defined as a two power poly nomical with 4 coefficients plus and an arbitrary number of additional guassian functions. The number of giassian functions if limited to the size of the <code>'_b'</code> array. The two power part is defined the same as <a class="el" href="profile_sec.html#profile_two_power">two_power</a>. The remaining guassian bits are defined as</p>
-<p>a(x) = b[i]*Exp(-(x - b[i + 1])^2/b[i + 2]^2)</p>
-<h2><a class="anchor" id="profile_two_power_r"></a>
-two_power_r</h2>
-<p><code>'two_power_r'</code> Reversed Two power profile defined the same as <a class="el" href="profile_sec.html#profile_two_power">two_power</a> except the argument is reversed. The function is maximum at x = 1 and minimum at x = 0.</p>
-<h2><a class="anchor" id="profile_power_series_gs"></a>
-power_series</h2>
-<p><code>'power_series'</code> Profile is defined as a power series with <code>'_b'</code> array coefficients.</p>
-<p>a(x) = b[0] + b[1]*x + b[2]*x^2 + b[3]*x^3 + etc...</p>
-<h2><a class="anchor" id="profile_cubic_spline"></a>
-cubic_spline</h2>
-<p><code>'cubic_spline'</code> Profile defined as cubic spline segments. Splines knots are defined by the position, <code>'_as'</code> array, and amplitude, <code>'_af'</code> array.</p>
-<h2><a class="anchor" id="profile_akima_spline"></a>
-akima_spline</h2>
-<p><code>'akima_spline'</code> Profile defined as akima spline segments. Splines knots are defined by the position, <code>'_as'</code> array, and amplitude, <code>'_af'</code> array.</p>
-<h2><a class="anchor" id="profile_line_segment"></a>
-line_segment</h2>
-<p><code>'<a class="el" href="namespaceline__segment.html" title="Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sig...">line_segment</a>'</code> Profile defined as line segments. Segment knots are defined by the position, <code>'_as'</code> array, and amplitude, <code>'_af'</code> array.</p>
-<h2><a class="anchor" id="profile_sq_ecp"></a>
-sq_exp_1d</h2>
-<p><code>'sq_exp_1d'</code> Guassian process profile are defined by hyper parameters in the first two elements of the <code>'_b'</code> array. The points the profile is computed to is defined by positions on the <code>'_as'</code> array.</p>
-<h2><a class="anchor" id="profile_sq_ecp"></a>
-sq_exp_1d</h2>
-<p><code>'sq_exp_1d_ln'</code> Guassian process profile are defined by hyper parameters in the first two elements of the <code>'_b'</code> array. The points the profile is computed to is defined by positions on the <code>'_as'</code> array. </p>
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-<p>Contains module <a class="el" href="namespaceprofiler.html">profiler</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full table of profiled functions.  <a href="structprofiler_1_1profiler__bucket.html#details">More...</a><br /></td></tr>
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-<tr class="separator:ab266b6acb4f5255931690b43d31780e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ac00fd28da21b60f054b396a00c6546ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a824701798f5229e743f741d4655526ab"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a824701798f5229e743f741d4655526ab">profiler::profiler_hash_function</a> (symbol_name)</td></tr>
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-<tr class="separator:a824701798f5229e743f741d4655526ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0770360f61f6885a34f3983a4ad9625b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a0770360f61f6885a34f3983a4ad9625b">profiler::profiler_write</a> (iou)</td></tr>
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-<tr class="separator:a0770360f61f6885a34f3983a4ad9625b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#a8198497a26b6fc30d31c623f7aee2dd3">profiler::profiler_string_size</a> = 68</td></tr>
-<tr class="memdesc:a8198497a26b6fc30d31c623f7aee2dd3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max string length. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#aa864b887a08e8026d904ade234c18b5a">profiler::profiler_bucket_size</a> = 1000</td></tr>
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-type(profiler_bucket), dimension(profiler_bucket_size), save&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceprofiler.html#afc9a352239240fe921860cfaba7fea42">profiler::buckets</a></td></tr>
-<tr class="memdesc:afc9a352239240fe921860cfaba7fea42"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of buckets to hold the values. <br /></td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceprofiler.html">profiler</a>. </p>
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-
-<p>Contains module <a class="el" href="namespacereconstruction.html">reconstruction</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction::reconstruction_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class containing all the data needed to reconstruct a model.  <a href="structreconstruction_1_1reconstruction__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacereconstruction_1_1reconstruction__write__step.html">reconstruction::reconstruction_write_step</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interface for writing out step data.  <a href="interfacereconstruction_1_1reconstruction__write__step.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a83008030c2512b04eb98f02af3ee7f73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.  <a href="namespacereconstruction.html#a83008030c2512b04eb98f02af3ee7f73">More...</a><br /></td></tr>
-<tr class="separator:a83008030c2512b04eb98f02af3ee7f73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa851e7448de9605070f9c6f86bc917e8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aa851e7448de9605070f9c6f86bc917e8">reconstruction::reconstruction_destruct</a> (this)</td></tr>
-<tr class="memdesc:aa851e7448de9605070f9c6f86bc917e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structreconstruction_1_1reconstruction__class.html">reconstruction_class</a> object.  <a href="namespacereconstruction.html#aa851e7448de9605070f9c6f86bc917e8">More...</a><br /></td></tr>
-<tr class="separator:aa851e7448de9605070f9c6f86bc917e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab2fdf4a2adcf3f1b03537f3928e32f03"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the expected g^2 size.  <a href="namespacereconstruction.html#ab2fdf4a2adcf3f1b03537f3928e32f03">More...</a><br /></td></tr>
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-<tr class="separator:aab7abf0d1ec5b8cf95f436c8fd949836"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ad06056417e4dffb8c2bb40ccb0e3284b">reconstruction::reconstruction_get_dg2</a> (this)</td></tr>
-<tr class="memdesc:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the change in g^2.  <a href="namespacereconstruction.html#ad06056417e4dffb8c2bb40ccb0e3284b">More...</a><br /></td></tr>
-<tr class="separator:ad06056417e4dffb8c2bb40ccb0e3284b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aebe0eed2575d30465603e1a65babbeaa"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aebe0eed2575d30465603e1a65babbeaa">reconstruction::reconstruction_eval_e</a> (this, signals, a_model, gaussp, eq_steps, iou, eq_comm)</td></tr>
-<tr class="memdesc:aebe0eed2575d30465603e1a65babbeaa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the e vector for a reconstruction step.  <a href="namespacereconstruction.html#aebe0eed2575d30465603e1a65babbeaa">More...</a><br /></td></tr>
-<tr class="separator:aebe0eed2575d30465603e1a65babbeaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a05b135cafa07fb268af718143b1045ca"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a05b135cafa07fb268af718143b1045ca">reconstruction::reconstruction_eval_f</a> (this, derived_params, a_model)</td></tr>
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-<tr class="separator:a05b135cafa07fb268af718143b1045ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a03f66db6b79a6227bd62cb903a4b33f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3e5878cd436ed7442689bb2e314d9109"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a3e5878cd436ed7442689bb2e314d9109">reconstruction::reconstruction_eval_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, iou, recon_comm, eq_comm)</td></tr>
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-<tr class="separator:a3e5878cd436ed7442689bb2e314d9109"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a7cd22ee027910c53365e4320645a1798"><td class="mdescLeft">&#160;</td><td class="mdescRight">Take a straight line step.  <a href="namespacereconstruction.html#a7cd22ee027910c53365e4320645a1798">More...</a><br /></td></tr>
-<tr class="separator:a7cd22ee027910c53365e4320645a1798"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60bf72f758cf6286abaf39ef18cb533b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a60bf72f758cf6286abaf39ef18cb533b">reconstruction::reconstruction_seg_step</a> (this, k_use, step_size, delta_a)</td></tr>
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-<tr class="separator:a60bf72f758cf6286abaf39ef18cb533b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a9fb4f742bf8db5975f91c4bc9285bf8a">reconstruction::reconstruction_lm_step</a> (this, k_use, step_size, delta_a)</td></tr>
-<tr class="memdesc:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Take a Levenberg-Marquardt step.  <a href="namespacereconstruction.html#a9fb4f742bf8db5975f91c4bc9285bf8a">More...</a><br /></td></tr>
-<tr class="separator:a9fb4f742bf8db5975f91c4bc9285bf8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">reconstruction::reconstruction_lm_rootfind</a> (this, k_use, lambda_default, step_size, utdote)</td></tr>
-<tr class="memdesc:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Root find for Levenberg-Marquardt step.  <a href="namespacereconstruction.html#a2d7ee6781b0183caa35e8a38c7a29d50">More...</a><br /></td></tr>
-<tr class="separator:a2d7ee6781b0183caa35e8a38c7a29d50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9df684288ec8bcdbe3b28e6f0422537c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">reconstruction::reconstruction_lm_function</a> (this, f_sqrd, step_size_sqrd, lambda)</td></tr>
-<tr class="memdesc:a9df684288ec8bcdbe3b28e6f0422537c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Levenberg-Marquardt function.  <a href="namespacereconstruction.html#a9df684288ec8bcdbe3b28e6f0422537c">More...</a><br /></td></tr>
-<tr class="separator:a9df684288ec8bcdbe3b28e6f0422537c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a5e20cf78de4c712e93ffa8a955f38e0b">reconstruction::reconstruction_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Step the reconstruction.  <a href="namespacereconstruction.html#a5e20cf78de4c712e93ffa8a955f38e0b">More...</a><br /></td></tr>
-<tr class="separator:a5e20cf78de4c712e93ffa8a955f38e0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28543db9f9e3a81655f836fd230086c9"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a28543db9f9e3a81655f836fd230086c9">reconstruction::reconstruction_try_step</a> (this, signals, derived_params, locks, a_model, gaussp, params, eq_steps, max_step, iou, recon_comm, eq_comm)</td></tr>
-<tr class="memdesc:a28543db9f9e3a81655f836fd230086c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Try step size.  <a href="namespacereconstruction.html#a28543db9f9e3a81655f836fd230086c9">More...</a><br /></td></tr>
-<tr class="separator:a28543db9f9e3a81655f836fd230086c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a854eb885feba6eb040e61962347f5a1d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a854eb885feba6eb040e61962347f5a1d">reconstruction::reconstruction_eval_sem</a> (this, params, signals, derived_params)</td></tr>
-<tr class="memdesc:a854eb885feba6eb040e61962347f5a1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the parameter covariance and signal effectiveness.  <a href="namespacereconstruction.html#a854eb885feba6eb040e61962347f5a1d">More...</a><br /></td></tr>
-<tr class="separator:a854eb885feba6eb040e61962347f5a1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a93ef33f5f3c73c26a245afe2e0c42067"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a93ef33f5f3c73c26a245afe2e0c42067">reconstruction::reconstruction_invert_matrix</a> (this, matrix, sub, name)</td></tr>
-<tr class="memdesc:a93ef33f5f3c73c26a245afe2e0c42067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Invert an M x N matrix.  <a href="namespacereconstruction.html#a93ef33f5f3c73c26a245afe2e0c42067">More...</a><br /></td></tr>
-<tr class="separator:a93ef33f5f3c73c26a245afe2e0c42067"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8592936bc0d810a89a8119dd0fcb4304"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a8592936bc0d810a89a8119dd0fcb4304">reconstruction::reconstruction_normalize_correlations</a> (params)</td></tr>
-<tr class="memdesc:a8592936bc0d810a89a8119dd0fcb4304"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normalize a correlation matrix.  <a href="namespacereconstruction.html#a8592936bc0d810a89a8119dd0fcb4304">More...</a><br /></td></tr>
-<tr class="separator:a8592936bc0d810a89a8119dd0fcb4304"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a304df94be496fd98208fd6572ea3c513"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a304df94be496fd98208fd6572ea3c513">reconstruction::reconstruction_write</a> (this, iou)</td></tr>
-<tr class="memdesc:a304df94be496fd98208fd6572ea3c513"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a reconstruction.  <a href="namespacereconstruction.html#a304df94be496fd98208fd6572ea3c513">More...</a><br /></td></tr>
-<tr class="separator:a304df94be496fd98208fd6572ea3c513"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85ec5fed3e79ce85950af391a015303d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a85ec5fed3e79ce85950af391a015303d">reconstruction::reconstruction_write_step1</a> (this, step_type, iou)</td></tr>
-<tr class="memdesc:a85ec5fed3e79ce85950af391a015303d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a reconstruction step attempt.  <a href="namespacereconstruction.html#a85ec5fed3e79ce85950af391a015303d">More...</a><br /></td></tr>
-<tr class="separator:a85ec5fed3e79ce85950af391a015303d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a298d4515dba754c1cfa422a67c4a6e50"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a298d4515dba754c1cfa422a67c4a6e50">reconstruction::reconstruction_write_step2</a> (this, iou)</td></tr>
-<tr class="memdesc:a298d4515dba754c1cfa422a67c4a6e50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a final reconstruction step.  <a href="namespacereconstruction.html#a298d4515dba754c1cfa422a67c4a6e50">More...</a><br /></td></tr>
-<tr class="separator:a298d4515dba754c1cfa422a67c4a6e50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a373ad3d2bfa182a7e382c78037eb6e25"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a373ad3d2bfa182a7e382c78037eb6e25">reconstruction::reconstruction_restart</a> (this, result_ncid, current_step, signals, derived_params, a_model)</td></tr>
-<tr class="memdesc:a373ad3d2bfa182a7e382c78037eb6e25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart from result file.  <a href="namespacereconstruction.html#a373ad3d2bfa182a7e382c78037eb6e25">More...</a><br /></td></tr>
-<tr class="separator:a373ad3d2bfa182a7e382c78037eb6e25"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ae69288ef17dae11c7af8f4eb7c6cca8d">reconstruction::reconstruction_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize state to children.  <a href="namespacereconstruction.html#ae69288ef17dae11c7af8f4eb7c6cca8d">More...</a><br /></td></tr>
-<tr class="separator:ae69288ef17dae11c7af8f4eb7c6cca8d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a37ca9ee0f2fd85d905ea78872669b432"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a37ca9ee0f2fd85d905ea78872669b432">reconstruction::reconstruction_sync_svd</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a37ca9ee0f2fd85d905ea78872669b432"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize svd.  <a href="namespacereconstruction.html#a37ca9ee0f2fd85d905ea78872669b432">More...</a><br /></td></tr>
-<tr class="separator:a37ca9ee0f2fd85d905ea78872669b432"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad911e0912a500e5566f4d751bef25b50"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#ad911e0912a500e5566f4d751bef25b50">reconstruction::reconstruction_sync_parent</a> (this, params, num_signal, num_derived_params, stride, offset, recon_comm)</td></tr>
-<tr class="memdesc:ad911e0912a500e5566f4d751bef25b50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize child state back to parent.  <a href="namespacereconstruction.html#ad911e0912a500e5566f4d751bef25b50">More...</a><br /></td></tr>
-<tr class="separator:ad911e0912a500e5566f4d751bef25b50"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Variables</h2></td></tr>
-<tr class="memitem:aed2cb2c702c10d9dce1b0591bc06807e"><td class="memItemLeft" align="right" valign="top"><a id="aed2cb2c702c10d9dce1b0591bc06807e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aed2cb2c702c10d9dce1b0591bc06807e">reconstruction::reconstruction_no_step_type</a> = -1</td></tr>
-<tr class="memdesc:aed2cb2c702c10d9dce1b0591bc06807e"><td class="mdescLeft">&#160;</td><td class="mdescRight">No reconstruction step type. <br /></td></tr>
-<tr class="separator:aed2cb2c702c10d9dce1b0591bc06807e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afba83f8244382977e7b285a145896598"><td class="memItemLeft" align="right" valign="top"><a id="afba83f8244382977e7b285a145896598"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#afba83f8244382977e7b285a145896598">reconstruction::reconstruction_sl_step_type</a> = 0</td></tr>
-<tr class="memdesc:afba83f8244382977e7b285a145896598"><td class="mdescLeft">&#160;</td><td class="mdescRight">Straight line reconstruction step type. <br /></td></tr>
-<tr class="separator:afba83f8244382977e7b285a145896598"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7657feeddb327f040f5113551cf9c7a4"><td class="memItemLeft" align="right" valign="top"><a id="a7657feeddb327f040f5113551cf9c7a4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#a7657feeddb327f040f5113551cf9c7a4">reconstruction::reconstruction_lm_step_type</a> = 1</td></tr>
-<tr class="memdesc:a7657feeddb327f040f5113551cf9c7a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Levenberg-Marquardt reconstruction step type. <br /></td></tr>
-<tr class="separator:a7657feeddb327f040f5113551cf9c7a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec1d97990ec03ad2134005a2b7ede596"><td class="memItemLeft" align="right" valign="top"><a id="aec1d97990ec03ad2134005a2b7ede596"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacereconstruction.html#aec1d97990ec03ad2134005a2b7ede596">reconstruction::reconstruction_seg_step_type</a> = 2</td></tr>
-<tr class="memdesc:aec1d97990ec03ad2134005a2b7ede596"><td class="mdescLeft">&#160;</td><td class="mdescRight">Segmented path reconstruction step type. <br /></td></tr>
-<tr class="separator:aec1d97990ec03ad2134005a2b7ede596"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ade1b7d51a807205755790a61f672a92b"><td class="memItemLeft" align="right" valign="top"><a id="ade1b7d51a807205755790a61f672a92b"></a>
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-<tr class="memdesc:ade1b7d51a807205755790a61f672a92b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of reconstruction step attemps. <br /></td></tr>
-<tr class="separator:ade1b7d51a807205755790a61f672a92b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacereconstruction.html">reconstruction</a>. </p>
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-<div class="title">restart_mod.f90 File Reference</div>  </div>
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-<p>Contains module <a class="el" href="namespacerestart__mod.html">restart_mod</a>.  
-<a href="#details">More...</a></p>
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-Modules</h2></td></tr>
-<tr class="memitem:namespacerestart__mod"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html">restart_mod</a></td></tr>
-<tr class="memdesc:namespacerestart__mod"><td class="mdescLeft">&#160;</td><td class="mdescRight">Contains routines for writting the restart file. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a34f956ea16409ac910dfe87512777129"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a34f956ea16409ac910dfe87512777129">restart_mod::restart_read</a> (restart_ext, wout_file, mpolin, ntorin, nfpi</td></tr>
-<tr class="memdesc:a34f956ea16409ac910dfe87512777129"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reads the restart file.  <a href="namespacerestart__mod.html#a34f956ea16409ac910dfe87512777129">More...</a><br /></td></tr>
-<tr class="separator:a34f956ea16409ac910dfe87512777129"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aec29a5ee88a04205090d268fc7cca0d6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aec29a5ee88a04205090d268fc7cca0d6">restart_mod::restart_write</a> (restart_ext, wout_file)</td></tr>
-<tr class="memdesc:aec29a5ee88a04205090d268fc7cca0d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the restart file.  <a href="namespacerestart__mod.html#aec29a5ee88a04205090d268fc7cca0d6">More...</a><br /></td></tr>
-<tr class="separator:aec29a5ee88a04205090d268fc7cca0d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a4fc9f56a2d4a8f7a7ef862251ccd1554">restart_mod::interpit</a> (aold, anew, ns_old, ns_new, mpol_old, mpol_new, ntor_old, ntor_new, nfp_old, nfp_new, tor_modes_old, tor_modes_new, lhalf)</td></tr>
-<tr class="memdesc:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate fourier quantites from the restart file.  <a href="namespacerestart__mod.html#a4fc9f56a2d4a8f7a7ef862251ccd1554">More...</a><br /></td></tr>
-<tr class="separator:a4fc9f56a2d4a8f7a7ef862251ccd1554"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab6c0b33cf218694723a8c8a97458b37c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab6c0b33cf218694723a8c8a97458b37c">restart_mod::interpit_1d</a> (aold, anew, ns_old, ns_new, lhalf, <a class="el" href="classparity.html">parity</a>)</td></tr>
-<tr class="memdesc:ab6c0b33cf218694723a8c8a97458b37c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolate radial quantites from the restart file.  <a href="namespacerestart__mod.html#ab6c0b33cf218694723a8c8a97458b37c">More...</a><br /></td></tr>
-<tr class="separator:ab6c0b33cf218694723a8c8a97458b37c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0651fbc27038ba424694c72a11c12210"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a0651fbc27038ba424694c72a11c12210">restart_mod::restart_normalize</a> (xmn, factor)</td></tr>
-<tr class="memdesc:a0651fbc27038ba424694c72a11c12210"><td class="mdescLeft">&#160;</td><td class="mdescRight">Denormalize a quantity so the value written to the restart file can be summed directly.  <a href="namespacerestart__mod.html#a0651fbc27038ba424694c72a11c12210">More...</a><br /></td></tr>
-<tr class="separator:a0651fbc27038ba424694c72a11c12210"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acecd3079289cc38e4b4ab34c59f6eddf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#acecd3079289cc38e4b4ab34c59f6eddf">restart_mod::restart_denormalize</a> (xmn, factor)</td></tr>
-<tr class="memdesc:acecd3079289cc38e4b4ab34c59f6eddf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Denormalize a quantity so the value written to the restart file can be summed directly.  <a href="namespacerestart__mod.html#acecd3079289cc38e4b4ab34c59f6eddf">More...</a><br /></td></tr>
-<tr class="separator:acecd3079289cc38e4b4ab34c59f6eddf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:a08081680dba11808460eace49ccf7b6a"><td class="memItemLeft" align="right" valign="top"><a id="a08081680dba11808460eace49ccf7b6a"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a08081680dba11808460eace49ccf7b6a">restart_mod::restart_version</a> = 0</td></tr>
-<tr class="memdesc:a08081680dba11808460eace49ccf7b6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Version number. <br /></td></tr>
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-<tr class="memitem:afa95c0985ae71d66bc4ae3e1933949bc"><td class="memItemLeft" align="right" valign="top"><a id="afa95c0985ae71d66bc4ae3e1933949bc"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#afa95c0985ae71d66bc4ae3e1933949bc">restart_mod::restart_lasym</a> = 31</td></tr>
-<tr class="memdesc:afa95c0985ae71d66bc4ae3e1933949bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position for the lasym flag. <br /></td></tr>
-<tr class="separator:afa95c0985ae71d66bc4ae3e1933949bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e458e8ae5a115086ee07111bab513a3"><td class="memItemLeft" align="right" valign="top"><a id="a7e458e8ae5a115086ee07111bab513a3"></a>
-character(len= *), dimension(1), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a7e458e8ae5a115086ee07111bab513a3">restart_mod::radial_dim</a> = (/ 'radius' /)</td></tr>
-<tr class="memdesc:a7e458e8ae5a115086ee07111bab513a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial Dimension names. <br /></td></tr>
-<tr class="separator:a7e458e8ae5a115086ee07111bab513a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28b2ca053fd487156841d1e4292cc9c5"><td class="memItemLeft" align="right" valign="top"><a id="a28b2ca053fd487156841d1e4292cc9c5"></a>
-character(len= *), dimension(3), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a28b2ca053fd487156841d1e4292cc9c5">restart_mod::restart_dims</a> = (/ 'm-mode', 'n-mode', radial_dim(1) /)</td></tr>
-<tr class="memdesc:a28b2ca053fd487156841d1e4292cc9c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Fourier Dimension names. <br /></td></tr>
-<tr class="separator:a28b2ca053fd487156841d1e4292cc9c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af1522f71f25dd55499b88dfe7658c974"><td class="memItemLeft" align="right" valign="top"><a id="af1522f71f25dd55499b88dfe7658c974"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#af1522f71f25dd55499b88dfe7658c974">restart_mod::vn_nsin</a> = 'nrad'</td></tr>
-<tr class="memdesc:af1522f71f25dd55499b88dfe7658c974"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of radial points. <br /></td></tr>
-<tr class="separator:af1522f71f25dd55499b88dfe7658c974"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1fae051325f7b6aadce1fe56c031f860"><td class="memItemLeft" align="right" valign="top"><a id="a1fae051325f7b6aadce1fe56c031f860"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a1fae051325f7b6aadce1fe56c031f860">restart_mod::vn_mpolin</a> = 'mpol'</td></tr>
-<tr class="memdesc:a1fae051325f7b6aadce1fe56c031f860"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of poloidal modes. <br /></td></tr>
-<tr class="separator:a1fae051325f7b6aadce1fe56c031f860"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed51bc3c7dc09d1c572d17fdcd8821e4"><td class="memItemLeft" align="right" valign="top"><a id="aed51bc3c7dc09d1c572d17fdcd8821e4"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aed51bc3c7dc09d1c572d17fdcd8821e4">restart_mod::vn_ntorin</a> = 'ntor'</td></tr>
-<tr class="memdesc:aed51bc3c7dc09d1c572d17fdcd8821e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of toroidal modes. <br /></td></tr>
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-<tr class="memitem:ae8e866611996006e9489bad12af8ad1c"><td class="memItemLeft" align="right" valign="top"><a id="ae8e866611996006e9489bad12af8ad1c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ae8e866611996006e9489bad12af8ad1c">restart_mod::vn_nfpin</a> = 'nfp'</td></tr>
-<tr class="memdesc:ae8e866611996006e9489bad12af8ad1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of field periods. <br /></td></tr>
-<tr class="separator:ae8e866611996006e9489bad12af8ad1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af98cc2e59f0dfde95f34cbd6fcee7f13"><td class="memItemLeft" align="right" valign="top"><a id="af98cc2e59f0dfde95f34cbd6fcee7f13"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#af98cc2e59f0dfde95f34cbd6fcee7f13">restart_mod::vn_wout</a> = 'wout_file'</td></tr>
-<tr class="memdesc:af98cc2e59f0dfde95f34cbd6fcee7f13"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of wout file modes. <br /></td></tr>
-<tr class="separator:af98cc2e59f0dfde95f34cbd6fcee7f13"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf00308f8ce571403fd618a50532588d"><td class="memItemLeft" align="right" valign="top"><a id="aaf00308f8ce571403fd618a50532588d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#aaf00308f8ce571403fd618a50532588d">restart_mod::vn_flags</a> = 'state_flags'</td></tr>
-<tr class="memdesc:aaf00308f8ce571403fd618a50532588d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file number of state flags modes. <br /></td></tr>
-<tr class="separator:aaf00308f8ce571403fd618a50532588d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac704019af262476e08dea0d90739d2b5"><td class="memItemLeft" align="right" valign="top"><a id="ac704019af262476e08dea0d90739d2b5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ac704019af262476e08dea0d90739d2b5">restart_mod::vn_tor_modes</a> = 'tor_modes'</td></tr>
-<tr class="memdesc:ac704019af262476e08dea0d90739d2b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file toroidal modes array. <br /></td></tr>
-<tr class="separator:ac704019af262476e08dea0d90739d2b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8dabe58f043ba85ceb69a36b0807182d"><td class="memItemLeft" align="right" valign="top"><a id="a8dabe58f043ba85ceb69a36b0807182d"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a8dabe58f043ba85ceb69a36b0807182d">restart_mod::vn_jbsupss</a> = 'JBsupssh_m_n_r_'</td></tr>
-<tr class="memdesc:a8dabe58f043ba85ceb69a36b0807182d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupss. <br /></td></tr>
-<tr class="separator:a8dabe58f043ba85ceb69a36b0807182d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1b5936c09a0b6b0e676667bee9066594"><td class="memItemLeft" align="right" valign="top"><a id="a1b5936c09a0b6b0e676667bee9066594"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a1b5936c09a0b6b0e676667bee9066594">restart_mod::vn_jbsupuc</a> = 'JBsupuch_m_n_r_'</td></tr>
-<tr class="memdesc:a1b5936c09a0b6b0e676667bee9066594"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupuc. <br /></td></tr>
-<tr class="separator:a1b5936c09a0b6b0e676667bee9066594"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b75f6044a7205024884ae8512a9f507"><td class="memItemLeft" align="right" valign="top"><a id="a3b75f6044a7205024884ae8512a9f507"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a3b75f6044a7205024884ae8512a9f507">restart_mod::vn_jbsupvc</a> = 'JBsupvch_m_n_r_'</td></tr>
-<tr class="memdesc:a3b75f6044a7205024884ae8512a9f507"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupvc. <br /></td></tr>
-<tr class="separator:a3b75f6044a7205024884ae8512a9f507"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="memItemLeft" align="right" valign="top"><a id="a6e74e96bdb92be900d8d3d7528af0dc6"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a6e74e96bdb92be900d8d3d7528af0dc6">restart_mod::vn_jbsupsc</a> = 'JBsupsch_m_n_r_'</td></tr>
-<tr class="memdesc:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupsc. <br /></td></tr>
-<tr class="separator:a6e74e96bdb92be900d8d3d7528af0dc6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="memItemLeft" align="right" valign="top"><a id="a2ae1cf9e4dcce7158729039c1a77cb8b"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a2ae1cf9e4dcce7158729039c1a77cb8b">restart_mod::vn_jbsupus</a> = 'JBsupush_m_n_r_'</td></tr>
-<tr class="memdesc:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupus. <br /></td></tr>
-<tr class="separator:a2ae1cf9e4dcce7158729039c1a77cb8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="memItemLeft" align="right" valign="top"><a id="ab89517f93a0ae13e5fa9d8e21afbe076"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#ab89517f93a0ae13e5fa9d8e21afbe076">restart_mod::vn_jbsupvs</a> = 'JBsupvsh_m_n_r_'</td></tr>
-<tr class="memdesc:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jbsupus. <br /></td></tr>
-<tr class="separator:ab89517f93a0ae13e5fa9d8e21afbe076"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a001d7e0137df07e4a922aa6a766ffe7c"><td class="memItemLeft" align="right" valign="top"><a id="a001d7e0137df07e4a922aa6a766ffe7c"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a001d7e0137df07e4a922aa6a766ffe7c">restart_mod::vn_jpresc</a> = 'jpresch_m_n_r_'</td></tr>
-<tr class="memdesc:a001d7e0137df07e4a922aa6a766ffe7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jpresc. <br /></td></tr>
-<tr class="separator:a001d7e0137df07e4a922aa6a766ffe7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64102fe7bf802f4509f1f751f9e04df4"><td class="memItemLeft" align="right" valign="top"><a id="a64102fe7bf802f4509f1f751f9e04df4"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a64102fe7bf802f4509f1f751f9e04df4">restart_mod::vn_jpress</a> = 'jpressh_m_n_r_'</td></tr>
-<tr class="memdesc:a64102fe7bf802f4509f1f751f9e04df4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file jpress. <br /></td></tr>
-<tr class="separator:a64102fe7bf802f4509f1f751f9e04df4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8ede25cf3a8e129d2a253aefe25059c5"><td class="memItemLeft" align="right" valign="top"><a id="a8ede25cf3a8e129d2a253aefe25059c5"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacerestart__mod.html#a8ede25cf3a8e129d2a253aefe25059c5">restart_mod::vn_rmnc</a> = 'rmnc_m_n_r_'</td></tr>
-<tr class="memdesc:a8ede25cf3a8e129d2a253aefe25059c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name for the restart file rmnc. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacerestart__mod.html">restart_mod</a>. </p>
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diff --git a/html/result_file_bmw.html b/html/result_file_bmw.html
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-Introduction</h1>
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-Variables</h1>
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-<td width="20%"><code>Variable(Dimensions)</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
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-<td width="20%"><code>px_grid (num_s, num_u, num_v)</code></td><td width="50%">X position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#a1529c0e86beac9d7ad0d407b678c196a">primed_grid::primed_grid_class::x</a> </td></tr>
-<tr>
-<td width="20%"><code>py_grid (num_s, num_u, num_v)</code></td><td width="50%">Y position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#adda9934aea052d0f5c3489d97ded1ebb">primed_grid::primed_grid_class::y</a> </td></tr>
-<tr>
-<td width="20%"><code>pz_grid (num_s, num_u, num_v)</code></td><td width="50%">Z position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#a6e2a724909cf8166c550f5a07ebd1d7d">primed_grid::primed_grid_class::z</a> </td></tr>
-<tr>
-<td width="20%"><code>jx_grid (num_s, num_u, num_v)</code></td><td width="50%">X position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#aeeeef2920686a0d73729219fa29ced72">primed_grid::primed_grid_class::j_x</a> </td></tr>
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-<td width="20%"><code>jy_grid (num_s, num_u, num_v)</code></td><td width="50%">Y position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#a71fccb32ae9aae78184f27ed1c28aac8">primed_grid::primed_grid_class::j_y</a> </td></tr>
-<tr>
-<td width="20%"><code>jz_grid (num_s, num_u, num_v)</code></td><td width="50%">Z position of the primed grid.</td><td width="30%"><a class="el" href="structprimed__grid_1_1primed__grid__class.html#acde247240e8f1b2730219886f9786e2d">primed_grid::primed_grid_class::j_z</a> </td></tr>
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-  <div class="headertitle">
-<div class="title">Result File </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#result_file_main_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#result_file_main_dim_sec">Dimensions</a><ul><li class="level2"><a href="#result_file_main_eq_dim_sec">Equilibrium Dimensions</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#result_file_main_var_sec">Variables</a><ul><li class="level2"><a href="#result_file_main_dir_param_var_sec">Derived Parameter Variables</a></li>
-<li class="level2"><a href="#result_file_main_param_var_sec">Reconstruction Parameter Variables</a></li>
-<li class="level2"><a href="#result_file_main_sig_var_sec">Signal Variables</a></li>
-<li class="level2"><a href="#result_file_main_eq_var_sec">Equilibrium Variables</a></li>
-</ul>
-</li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="result_file_main_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a result NetCDF file.</p>
-<h1><a class="anchor" id="result_file_main_dim_sec"></a>
-Dimensions</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Dimension</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>maxnsteps</code></td><td width="50%">The max number of reconstruction steps.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#adc0364b9f818950f73a6812862c2eb9c">v3fit_input::nrstep</a> </td></tr>
-<tr>
-<td width="20%"><code>ndparam</code></td><td width="50%">Number of derived parameters.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a7adc371e0b3a169e5e4beacbf6be9478">v3fit_input::n_dp</a> </td></tr>
-<tr>
-<td width="20%"><code>nparam</code></td><td width="50%">Number of reconstruction parameters.</td><td width="30%"><a class="el" href="namespacev3fit__input.html#a6c1c93425f04f7f004593be942760314">v3fit_input::n_rp</a> </td></tr>
-<tr>
-<td width="20%"><code>nparamindex</code></td><td width="50%">Number of parameter indices.</td><td width="30%"><a class="el" href="namespacedata__parameters.html#a71ff4854fd6b5cf86c1c4f46a19db20c">data_parameters::data_max_indices</a> </td></tr>
-<tr>
-<td width="20%"><code>nsignal</code></td><td width="50%">Number of constructed signals.</td><td width="30%"><a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a40c8a67405aa0f88675d619ea0c763ed">v3fit_context::v3fit_context_class::signals</a> </td></tr>
-<tr>
-<td width="20%"><code>string_len</code></td><td width="50%">Max lenth of strings.</td><td width="30%"><a class="el" href="namespacedata__parameters.html#a5af930b6b7d6148f98708d2b522eba76">data_parameters::data_name_length</a> </td></tr>
-</table>
-<h2><a class="anchor" id="result_file_main_eq_dim_sec"></a>
-Equilibrium Dimensions</h2>
-<p>Equilibrium dimensions change depending on the equilibrium used.</p><ul>
-<li>Model <a class="el" href="result_file_model.html#result_file_model_dim_sec">Dimensions</a></li>
-<li>VMEC <a class="el" href="result_file_vmec.html#result_file_vmec_dim_sec">Dimensions</a></li>
-</ul>
-<h1><a class="anchor" id="result_file_main_var_sec"></a>
-Variables</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Variable(Dimensions)</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>nsteps</code></td><td width="50%">Actual number of steps taken.</td><td width="30%"><a class="el" href="structreconstruction_1_1reconstruction__class.html#a546b0abdb96cd9dc930edd3a6d5cec38">reconstruction::reconstruction_class::current_step</a> </td></tr>
-<tr>
-<td width="20%"><code>g2 (maxnsteps)</code></td><td width="50%">g^2 value for each reconstruction step.</td><td width="30%"><a class="el" href="namespacereconstruction.html#aad364ff7c16ea1de63c90635257fd2dc">reconstruction::reconstruction_get_g2</a> </td></tr>
-</table>
-<h2><a class="anchor" id="result_file_main_dir_param_var_sec"></a>
-Derived Parameter Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>derived_param_name (string_len, ndparam)</code></td><td width="50%">Name of the derived parameter.</td><td width="30%"><a class="el" href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">v3fit_params::param_get_name</a> </td></tr>
-<tr>
-<td width="20%"><code>derived_param_index (nparamindex, ndparam)</code></td><td width="50%">Indices of the derived parameter.</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#a49d29b2f4a7d9073065fa6de1fbf4bf3">v3fit_params::param_class::indices</a> </td></tr>
-<tr>
-<td width="20%"><code>derived_param_value (ndparam, maxnsteps)</code></td><td width="50%">Parameter values for each derived step.</td><td width="30%"><a class="el" href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">v3fit_params::param_get_value</a> </td></tr>
-<tr>
-<td width="20%"><code>derived_param_sigma (ndparam, maxnsteps)</code></td><td width="50%">Parameter sigmas for each derived step.</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#ae37c690d1971fae91ce73570a2aa4a32">v3fit_params::param_class::sigma</a> </td></tr>
-<tr>
-<td width="20%"><code>derived_param_corr (ndparam, ndparam, maxnsteps)</code></td><td width="50%">Correlation matrix of the derived parameters</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">v3fit_params::param_class::correlation</a> </td></tr>
-</table>
-<h2><a class="anchor" id="result_file_main_param_var_sec"></a>
-Reconstruction Parameter Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>param_name (string_len, nparam)</code></td><td width="50%">Name of the reconstruction parameter.</td><td width="30%"><a class="el" href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">v3fit_params::param_get_name</a> </td></tr>
-<tr>
-<td width="20%"><code>param_index (nparamindex, nparam)</code></td><td width="50%">Indices of the reconstruction parameter.</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#a49d29b2f4a7d9073065fa6de1fbf4bf3">v3fit_params::param_class::indices</a> </td></tr>
-<tr>
-<td width="20%"><code>param_value (nparam, maxnsteps)</code></td><td width="50%">Parameter values for each reconstruction step.</td><td width="30%"><a class="el" href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">v3fit_params::param_get_value</a> </td></tr>
-<tr>
-<td width="20%"><code>param_sigma (nparam, maxnsteps)</code></td><td width="50%">Parameter sigmas for each reconstruction step.</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#ae37c690d1971fae91ce73570a2aa4a32">v3fit_params::param_class::sigma</a> </td></tr>
-<tr>
-<td width="20%"><code>param_corr (nparam, nparam, maxnsteps)</code></td><td width="50%">Correlation matrix of the reconstruction parameters</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__class.html#ab25a31f630c7fb81d452ca150c67fef5">v3fit_params::param_class::correlation</a> </td></tr>
-<tr>
-<td width="20%"><code>signal_eff_matrix (nsignal, nparam, maxnsteps)</code></td><td width="50%">Signal effectiveness for each reconstruction step.</td><td width="30%"><a class="el" href="structv3fit__params_1_1param__recon__class.html#a3426102cdc2791aa5bf82e29d9c3f056">v3fit_params::param_recon_class::sem</a> </td></tr>
-</table>
-<h2><a class="anchor" id="result_file_main_sig_var_sec"></a>
-Signal Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>signal_name (string_len, nsignal)</code></td><td width="50%">Short name of the signal.</td><td width="30%"><a class="el" href="structsignal_1_1signal__class.html#ac189e7767d60286a0f70faa5fce91dd1">signal::signal_class::s_name</a> </td></tr>
-<tr>
-<td width="20%"><code>signal_type (string_len, nsignal)</code></td><td width="50%">Description of the signal.</td><td width="30%"><a class="el" href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">signal::signal_get_type</a> </td></tr>
-<tr>
-<td width="20%"><code>signal_weight (nsignal)</code></td><td width="50%">Weight value of the signal.</td><td width="30%"><a class="el" href="structsignal_1_1signal__class.html#ac8c29f7c1ffb2980dae3dc06bce53b0e">signal::signal_class::weight</a> </td></tr>
-<tr>
-<td width="20%"><code>signal_observed_value (nsignal)</code></td><td width="50%">Observed value of the signal.</td><td width="30%"><a class="el" href="structsignal_1_1signal__class.html#aa5950221a08dd382a96b139e4ddafb32">signal::signal_class::observed</a> </td></tr>
-<tr>
-<td width="20%"><code>signal_model_value (nsignal, maxnsteps)</code></td><td width="50%">Modeled value of the signal at each reconstruction step.</td><td width="30%">signal::signal_get_modeled_signal </td></tr>
-<tr>
-<td width="20%"><code>signal_sigma_value (nsignal, maxnsteps)</code></td><td width="50%">Sigma value of the signal at each reconstruction step.</td><td width="30%"><a class="el" href="namespacesignal.html#af8b5017e0bb197117d7bdcba69603d3f">signal::signal_get_g2</a> </td></tr>
-</table>
-<h2><a class="anchor" id="result_file_main_eq_var_sec"></a>
-Equilibrium Variables</h2>
-<p>Equilibrium variables change depending on the equilibrium used.</p><ul>
-<li>Model <a class="el" href="result_file_model.html#result_file_model_var_sec">Variables</a></li>
-<li>VMEC <a class="el" href="result_file_vmec.html#result_file_vmec_var_sec">Variables</a> </li>
-</ul>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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diff --git a/html/result_file_model.html b/html/result_file_model.html
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-  <div class="headertitle">
-<div class="title">Model Result File </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#result_file_model_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#result_file_model_dim_sec">Dimensions</a></li>
-<li class="level1"><a href="#result_file_model_var_sec">Variables</a><ul><li class="level2"><a href="#result_file_model_grid_sec">Model Profiles</a></li>
-</ul>
-</li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="result_file_model_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a result NetCDF file contributed by the model. The remaining parts of the result file are documented in the <a class="el" href="result_file_main.html">Result File</a> page.</p>
-<h1><a class="anchor" id="result_file_model_dim_sec"></a>
-Dimensions</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Dimension</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>model_grid_size</code></td><td width="50%">Size of the radial profile grids</td><td width="30%"><a class="el" href="namespaceequilibrium.html#a5e269ab9a6543c2c2dd4900ae96c19b8">equilibrium::equilibrium_get_grid_size</a> </td></tr>
-<tr>
-<td width="20%"><code>model_num_sxrem</code></td><td width="50%">Number of soft x-ray emissivity profiles.</td><td width="30%">v3fit_input::v3fit_max_sxrem_profiles </td></tr>
-<tr>
-<td width="20%"><code>model_num_coosig_w</code></td><td width="50%">Number of combination signal weights.</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a631c6dc717db9be92f2a4054283e2627">model::model_class::coosig_wgts</a> </td></tr>
-</table>
-<h1><a class="anchor" id="result_file_model_var_sec"></a>
-Variables</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Variable(Dimensions)</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>model_ne_type (string_len)</code></td><td width="50%">Discription of the electron density model.</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a6d398cba565b1c43bb47e56af3617f02">model::model_class::ne_type</a> </td></tr>
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-<td width="20%"><code>ne_min (maxnsteps)</code></td><td width="50%">Minimum electron density</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#ad0c9a9c35a6a1ed07c062338bc2fd041">model::model_class::ne_min</a> </td></tr>
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-<td width="20%"><code>coosig_wgts (num_wgts, maxnsteps)</code></td><td width="50%">Combination Signal Weights</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a631c6dc717db9be92f2a4054283e2627">model::model_class::coosig_wgts</a> </td></tr>
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-<td width="20%"><code>ne_grid (model_grid_size, maxnsteps)</code></td><td width="50%">Radial profile of the electron density</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a4b715366e74c2cabc1ae86964c4ba19d">model::model_class::ne_grid</a> </td></tr>
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-<td width="20%"><code>te_grid (model_grid_size, maxnsteps)</code></td><td width="50%">Radial profile of the electron temperature</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a9aeefdd06df09cf6343f105c02e13556">model::model_class::te_grid</a> </td></tr>
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-<td width="20%"><code>ti_grid (model_grid_size, maxnsteps)</code></td><td width="50%">Radial profile of the ion temperature</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a8c40878b64246666ce472b688e7b634c">model::model_class::ti_grid</a> </td></tr>
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-<td width="20%"><code>sxrem_grid (model_grid_size, model_num_sxrem, maxnsteps)</code></td><td width="50%">Radial profile of the soft x-ray emissivity</td><td width="30%"><a class="el" href="structmodel_1_1model__class.html#a2ef64f2a8cc0059e1539ce915434d50d">model::model_class::sxrem_grid</a> </td></tr>
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-Introduction</h1>
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-<div id="SRResults"></div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-createResults();
-/* @license-end */
-</script>
-<div class="SRStatus" id="Searching">Searching...</div>
-<div class="SRStatus" id="NoMatches">No Matches</div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-document.getElementById("Loading").style.display="none";
-document.getElementById("NoMatches").style.display="none";
-var searchResults = new SearchResults("searchResults");
-searchResults.Search();
-window.addEventListener("message", function(event) {
-  if (event.data == "take_focus") {
-    var elem = searchResults.NavNext(0);
-    if (elem) elem.focus();
-  }
-});
-/* @license-end */
-</script>
-</div>
-</body>
-</html>
diff --git a/html/search/pages_9.js b/html/search/pages_9.js
deleted file mode 100644
index 9a9ffb1..0000000
--- a/html/search/pages_9.js
+++ /dev/null
@@ -1,4 +0,0 @@
-var searchData=
-[
-  ['result_20file_5848',['Result File',['../result_file_main.html',1,'']]]
-];
diff --git a/html/search/pages_a.html b/html/search/pages_a.html
deleted file mode 100644
index 2cc9d19..0000000
--- a/html/search/pages_a.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head><title></title>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<link rel="stylesheet" type="text/css" href="search.css"/>
-<script type="text/javascript" src="pages_a.js"></script>
-<script type="text/javascript" src="search.js"></script>
-</head>
-<body class="SRPage">
-<div id="SRIndex">
-<div class="SRStatus" id="Loading">Loading...</div>
-<div id="SRResults"></div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-createResults();
-/* @license-end */
-</script>
-<div class="SRStatus" id="Searching">Searching...</div>
-<div class="SRStatus" id="NoMatches">No Matches</div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-document.getElementById("Loading").style.display="none";
-document.getElementById("NoMatches").style.display="none";
-var searchResults = new SearchResults("searchResults");
-searchResults.Search();
-window.addEventListener("message", function(event) {
-  if (event.data == "take_focus") {
-    var elem = searchResults.NavNext(0);
-    if (elem) elem.focus();
-  }
-});
-/* @license-end */
-</script>
-</div>
-</body>
-</html>
diff --git a/html/search/pages_a.js b/html/search/pages_a.js
deleted file mode 100644
index 705a056..0000000
--- a/html/search/pages_a.js
+++ /dev/null
@@ -1,12 +0,0 @@
-var searchData=
-[
-  ['siesta_5849',['SIESTA',['../md_SIESTA_README.html',1,'']]],
-  ['siesta_20equilibrium_20manual_5850',['SIESTA Equilibrium Manual',['../siesta_equilibrium_sec.html',1,'']]],
-  ['siesta_20result_20file_5851',['SIESTA Result File',['../result_file_siesta.html',1,'']]],
-  ['soft_20x_2dray_20diagnostic_20dot_20file_5852',['Soft X-Ray Diagnostic Dot File',['../sxrem_dot_sec.html',1,'']]],
-  ['soft_20x_2dray_20emission_20file_20manual_5853',['Soft X-Ray Emission File Manual',['../emission_file_sec.html',1,'']]],
-  ['soft_20x_2dray_20emissivity_20ratio_20dot_20file_5854',['Soft X-ray Emissivity Ratio Dot File',['../sxrem_ratio_dot_sec.html',1,'']]],
-  ['stellarator_2dtools_5855',['Stellarator-Tools',['../md_README.html',1,'']]],
-  ['stellarator_2dtools_20build_20system_5856',['Stellarator-Tools Build System',['../build_system.html',1,'']]],
-  ['surface_5857',['SURFACE',['../md_SURFACE_README.html',1,'']]]
-];
diff --git a/html/search/pages_b.html b/html/search/pages_b.html
deleted file mode 100644
index 151db55..0000000
--- a/html/search/pages_b.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head><title></title>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<link rel="stylesheet" type="text/css" href="search.css"/>
-<script type="text/javascript" src="pages_b.js"></script>
-<script type="text/javascript" src="search.js"></script>
-</head>
-<body class="SRPage">
-<div id="SRIndex">
-<div class="SRStatus" id="Loading">Loading...</div>
-<div id="SRResults"></div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-createResults();
-/* @license-end */
-</script>
-<div class="SRStatus" id="Searching">Searching...</div>
-<div class="SRStatus" id="NoMatches">No Matches</div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-document.getElementById("Loading").style.display="none";
-document.getElementById("NoMatches").style.display="none";
-var searchResults = new SearchResults("searchResults");
-searchResults.Search();
-window.addEventListener("message", function(event) {
-  if (event.data == "take_focus") {
-    var elem = searchResults.NavNext(0);
-    if (elem) elem.focus();
-  }
-});
-/* @license-end */
-</script>
-</div>
-</body>
-</html>
diff --git a/html/search/pages_b.js b/html/search/pages_b.js
deleted file mode 100644
index b0a997d..0000000
--- a/html/search/pages_b.js
+++ /dev/null
@@ -1,6 +0,0 @@
-var searchData=
-[
-  ['testing_20framework_20documentation_5858',['Testing Framework Documentation',['../testing.html',1,'']]],
-  ['thomson_20scattering_20diagnostic_20dot_20file_5859',['Thomson Scattering Diagnostic Dot File',['../thomson_dot_sec.html',1,'']]],
-  ['todo_20list_5860',['Todo List',['../todo.html',1,'']]]
-];
diff --git a/html/search/pages_c.html b/html/search/pages_c.html
deleted file mode 100644
index 6790b0d..0000000
--- a/html/search/pages_c.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head><title></title>
-<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta name="generator" content="Doxygen 1.9.1"/>
-<link rel="stylesheet" type="text/css" href="search.css"/>
-<script type="text/javascript" src="pages_c.js"></script>
-<script type="text/javascript" src="search.js"></script>
-</head>
-<body class="SRPage">
-<div id="SRIndex">
-<div class="SRStatus" id="Loading">Loading...</div>
-<div id="SRResults"></div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-createResults();
-/* @license-end */
-</script>
-<div class="SRStatus" id="Searching">Searching...</div>
-<div class="SRStatus" id="NoMatches">No Matches</div>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
-document.getElementById("Loading").style.display="none";
-document.getElementById("NoMatches").style.display="none";
-var searchResults = new SearchResults("searchResults");
-searchResults.Search();
-window.addEventListener("message", function(event) {
-  if (event.data == "take_focus") {
-    var elem = searchResults.NavNext(0);
-    if (elem) elem.focus();
-  }
-});
-/* @license-end */
-</script>
-</div>
-</body>
-</html>
diff --git a/html/search/pages_c.js b/html/search/pages_c.js
deleted file mode 100644
index f5cbf29..0000000
--- a/html/search/pages_c.js
+++ /dev/null
@@ -1,10 +0,0 @@
-var searchData=
-[
-  ['v3fit_5861',['V3FIT',['../md_V3FIT_README.html',1,'']]],
-  ['v3fit_20architecture_5862',['V3FIT Architecture',['../architecture.html',1,'']]],
-  ['v3rfun_5863',['V3RFUN',['../md_V3RFUN_README.html',1,'']]],
-  ['vacuum_20equilibrium_20manual_5864',['Vacuum Equilibrium Manual',['../vacuum_equilibrium_sec.html',1,'']]],
-  ['vmec_5865',['VMEC',['../md_PARVMEC_README.html',1,'']]],
-  ['vmec_20equilibrium_20manual_5866',['VMEC Equilibrium Manual',['../vmec_equilibrium_sec.html',1,'']]],
-  ['vmec_20result_20file_5867',['VMEC Result File',['../result_file_vmec.html',1,'']]]
-];
diff --git a/html/search/search.css b/html/search/search.css
deleted file mode 100644
index 9074198..0000000
--- a/html/search/search.css
+++ /dev/null
@@ -1,257 +0,0 @@
-/*---------------- Search Box */
-
-#MSearchBox {
-    white-space : nowrap;
-    background: white;
-    border-radius: 0.65em;
-    box-shadow: inset 0.5px 0.5px 3px 0px #555;
-    z-index: 102;
-}
-
-#MSearchBox .left {
-    display: inline-block;
-    vertical-align: middle;
-    height: 1.4em;
-}
-
-#MSearchSelect {
-    display: inline-block;
-    vertical-align: middle;
-    height: 1.4em;
-    padding: 0 0 0 0.3em;
-    margin: 0;
-}
-
-#MSearchField {
-    display: inline-block;
-    vertical-align: middle;
-    width: 7.5em;
-    height: 1.1em;
-    margin: 0 0.15em;
-    padding: 0;
-    line-height: 1em;
-    border:none;
-    color: #909090;
-    outline: none;
-    font-family: Arial, Verdana, sans-serif;
-    -webkit-border-radius: 0px;
-    border-radius: 0px;
-    background: none;
-}
-
-
-#MSearchBox .right {
-    display: inline-block;
-    vertical-align: middle;
-    width: 1.4em;
-    height: 1.4em;
-}
-
-#MSearchClose {
-    display: none;
-    font-size: inherit;
-    background : none;
-    border: none;
-    margin: 0;
-    padding: 0;
-    outline: none;
-
-}
-
-#MSearchCloseImg {
-    height: 1.4em;
-    padding: 0.3em;
-    margin: 0;
-}
-
-.MSearchBoxActive #MSearchField {
-    color: #000000;
-}
-
-#main-menu > li:last-child {
-    /* This <li> object is the parent of the search bar */
-    display: flex;
-    justify-content: center;
-    align-items: center;
-    height: 36px;
-    margin-right: 1em;
-}
-
-/*---------------- Search filter selection */
-
-#MSearchSelectWindow {
-    display: none;
-    position: absolute;
-    left: 0; top: 0;
-    border: 1px solid #90A5CE;
-    background-color: #F9FAFC;
-    z-index: 10001;
-    padding-top: 4px;
-    padding-bottom: 4px;
-    -moz-border-radius: 4px;
-    -webkit-border-top-left-radius: 4px;
-    -webkit-border-top-right-radius: 4px;
-    -webkit-border-bottom-left-radius: 4px;
-    -webkit-border-bottom-right-radius: 4px;
-    -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
-}
-
-.SelectItem {
-    font: 8pt Arial, Verdana, sans-serif;
-    padding-left:  2px;
-    padding-right: 12px;
-    border: 0px;
-}
-
-span.SelectionMark {
-    margin-right: 4px;
-    font-family: monospace;
-    outline-style: none;
-    text-decoration: none;
-}
-
-a.SelectItem {
-    display: block;
-    outline-style: none;
-    color: #000000; 
-    text-decoration: none;
-    padding-left:   6px;
-    padding-right: 12px;
-}
-
-a.SelectItem:focus,
-a.SelectItem:active {
-    color: #000000; 
-    outline-style: none;
-    text-decoration: none;
-}
-
-a.SelectItem:hover {
-    color: #FFFFFF;
-    background-color: #3D578C;
-    outline-style: none;
-    text-decoration: none;
-    cursor: pointer;
-    display: block;
-}
-
-/*---------------- Search results window */
-
-iframe#MSearchResults {
-    width: 60ex;
-    height: 15em;
-}
-
-#MSearchResultsWindow {
-    display: none;
-    position: absolute;
-    left: 0; top: 0;
-    border: 1px solid #000;
-    background-color: #EEF1F7;
-    z-index:10000;
-}
-
-/* ----------------------------------- */
-
-
-#SRIndex {
-    clear:both; 
-    padding-bottom: 15px;
-}
-
-.SREntry {
-    font-size: 10pt;
-    padding-left: 1ex;
-}
-
-.SRPage .SREntry {
-    font-size: 8pt;
-    padding: 1px 5px;
-}
-
-body.SRPage {
-    margin: 5px 2px;
-}
-
-.SRChildren {
-    padding-left: 3ex; padding-bottom: .5em 
-}
-
-.SRPage .SRChildren {
-    display: none;
-}
-
-.SRSymbol {
-    font-weight: bold; 
-    color: #425E97;
-    font-family: Arial, Verdana, sans-serif;
-    text-decoration: none;
-    outline: none;
-}
-
-a.SRScope {
-    display: block;
-    color: #425E97; 
-    font-family: Arial, Verdana, sans-serif;
-    text-decoration: none;
-    outline: none;
-}
-
-a.SRSymbol:focus, a.SRSymbol:active,
-a.SRScope:focus, a.SRScope:active {
-    text-decoration: underline;
-}
-
-span.SRScope {
-    padding-left: 4px;
-    font-family: Arial, Verdana, sans-serif;
-}
-
-.SRPage .SRStatus {
-    padding: 2px 5px;
-    font-size: 8pt;
-    font-style: italic;
-    font-family: Arial, Verdana, sans-serif;
-}
-
-.SRResult {
-    display: none;
-}
-
-div.searchresults {
-    margin-left: 10px;
-    margin-right: 10px;
-}
-
-/*---------------- External search page results */
-
-.searchresult {
-    background-color: #F0F3F8;
-}
-
-.pages b {
-   color: white;
-   padding: 5px 5px 3px 5px;
-   background-image: url("../tab_a.png");
-   background-repeat: repeat-x;
-   text-shadow: 0 1px 1px #000000;
-}
-
-.pages {
-    line-height: 17px;
-    margin-left: 4px;
-    text-decoration: none;
-}
-
-.hl {
-    font-weight: bold;
-}
-
-#searchresults {
-    margin-bottom: 20px;
-}
-
-.searchpages {
-    margin-top: 10px;
-}
-
diff --git a/html/search/search.js b/html/search/search.js
deleted file mode 100644
index fb226f7..0000000
--- a/html/search/search.js
+++ /dev/null
@@ -1,816 +0,0 @@
-/*
- @licstart  The following is the entire license notice for the JavaScript code in this file.
-
- The MIT License (MIT)
-
- Copyright (C) 1997-2020 by Dimitri van Heesch
-
- Permission is hereby granted, free of charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge, publish, distribute,
- sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
-
- The above copyright notice and this permission notice shall be included in all copies or
- substantial portions of the Software.
-
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
- BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
- DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
- @licend  The above is the entire license notice for the JavaScript code in this file
- */
-function convertToId(search)
-{
-  var result = '';
-  for (i=0;i<search.length;i++)
-  {
-    var c = search.charAt(i);
-    var cn = c.charCodeAt(0);
-    if (c.match(/[a-z0-9\u0080-\uFFFF]/))
-    {
-      result+=c;
-    }
-    else if (cn<16)
-    {
-      result+="_0"+cn.toString(16);
-    }
-    else
-    {
-      result+="_"+cn.toString(16);
-    }
-  }
-  return result;
-}
-
-function getXPos(item)
-{
-  var x = 0;
-  if (item.offsetWidth)
-  {
-    while (item && item!=document.body)
-    {
-      x   += item.offsetLeft;
-      item = item.offsetParent;
-    }
-  }
-  return x;
-}
-
-function getYPos(item)
-{
-  var y = 0;
-  if (item.offsetWidth)
-  {
-     while (item && item!=document.body)
-     {
-       y   += item.offsetTop;
-       item = item.offsetParent;
-     }
-  }
-  return y;
-}
-
-/* A class handling everything associated with the search panel.
-
-   Parameters:
-   name - The name of the global variable that will be
-          storing this instance.  Is needed to be able to set timeouts.
-   resultPath - path to use for external files
-*/
-function SearchBox(name, resultsPath, inFrame, label, extension)
-{
-  if (!name || !resultsPath) {  alert("Missing parameters to SearchBox."); }
-  if (!extension || extension == "") { extension = ".html"; }
-
-  // ---------- Instance variables
-  this.name                  = name;
-  this.resultsPath           = resultsPath;
-  this.keyTimeout            = 0;
-  this.keyTimeoutLength      = 500;
-  this.closeSelectionTimeout = 300;
-  this.lastSearchValue       = "";
-  this.lastResultsPage       = "";
-  this.hideTimeout           = 0;
-  this.searchIndex           = 0;
-  this.searchActive          = false;
-  this.insideFrame           = inFrame;
-  this.searchLabel           = label;
-  this.extension             = extension;
-
-  // ----------- DOM Elements
-
-  this.DOMSearchField = function()
-  {  return document.getElementById("MSearchField");  }
-
-  this.DOMSearchSelect = function()
-  {  return document.getElementById("MSearchSelect");  }
-
-  this.DOMSearchSelectWindow = function()
-  {  return document.getElementById("MSearchSelectWindow");  }
-
-  this.DOMPopupSearchResults = function()
-  {  return document.getElementById("MSearchResults");  }
-
-  this.DOMPopupSearchResultsWindow = function()
-  {  return document.getElementById("MSearchResultsWindow");  }
-
-  this.DOMSearchClose = function()
-  {  return document.getElementById("MSearchClose"); }
-
-  this.DOMSearchBox = function()
-  {  return document.getElementById("MSearchBox");  }
-
-  // ------------ Event Handlers
-
-  // Called when focus is added or removed from the search field.
-  this.OnSearchFieldFocus = function(isActive)
-  {
-    this.Activate(isActive);
-  }
-
-  this.OnSearchSelectShow = function()
-  {
-    var searchSelectWindow = this.DOMSearchSelectWindow();
-    var searchField        = this.DOMSearchSelect();
-
-    if (this.insideFrame)
-    {
-      var left = getXPos(searchField);
-      var top  = getYPos(searchField);
-      left += searchField.offsetWidth + 6;
-      top += searchField.offsetHeight;
-
-      // show search selection popup
-      searchSelectWindow.style.display='block';
-      left -= searchSelectWindow.offsetWidth;
-      searchSelectWindow.style.left =  left + 'px';
-      searchSelectWindow.style.top  =  top  + 'px';
-    }
-    else
-    {
-      var left = getXPos(searchField);
-      var top  = getYPos(searchField);
-      top += searchField.offsetHeight;
-
-      // show search selection popup
-      searchSelectWindow.style.display='block';
-      searchSelectWindow.style.left =  left + 'px';
-      searchSelectWindow.style.top  =  top  + 'px';
-    }
-
-    // stop selection hide timer
-    if (this.hideTimeout)
-    {
-      clearTimeout(this.hideTimeout);
-      this.hideTimeout=0;
-    }
-    return false; // to avoid "image drag" default event
-  }
-
-  this.OnSearchSelectHide = function()
-  {
-    this.hideTimeout = setTimeout(this.name +".CloseSelectionWindow()",
-                                  this.closeSelectionTimeout);
-  }
-
-  // Called when the content of the search field is changed.
-  this.OnSearchFieldChange = function(evt)
-  {
-    if (this.keyTimeout) // kill running timer
-    {
-      clearTimeout(this.keyTimeout);
-      this.keyTimeout = 0;
-    }
-
-    var e  = (evt) ? evt : window.event; // for IE
-    if (e.keyCode==40 || e.keyCode==13)
-    {
-      if (e.shiftKey==1)
-      {
-        this.OnSearchSelectShow();
-        var win=this.DOMSearchSelectWindow();
-        for (i=0;i<win.childNodes.length;i++)
-        {
-          var child = win.childNodes[i]; // get span within a
-          if (child.className=='SelectItem')
-          {
-            child.focus();
-            return;
-          }
-        }
-        return;
-      }
-      else
-      {
-        window.frames.MSearchResults.postMessage("take_focus", "*");
-      }
-    }
-    else if (e.keyCode==27) // Escape out of the search field
-    {
-      this.DOMSearchField().blur();
-      this.DOMPopupSearchResultsWindow().style.display = 'none';
-      this.DOMSearchClose().style.display = 'none';
-      this.lastSearchValue = '';
-      this.Activate(false);
-      return;
-    }
-
-    // strip whitespaces
-    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
-
-    if (searchValue != this.lastSearchValue) // search value has changed
-    {
-      if (searchValue != "") // non-empty search
-      {
-        // set timer for search update
-        this.keyTimeout = setTimeout(this.name + '.Search()',
-                                     this.keyTimeoutLength);
-      }
-      else // empty search field
-      {
-        this.DOMPopupSearchResultsWindow().style.display = 'none';
-        this.DOMSearchClose().style.display = 'none';
-        this.lastSearchValue = '';
-      }
-    }
-  }
-
-  this.SelectItemCount = function(id)
-  {
-    var count=0;
-    var win=this.DOMSearchSelectWindow();
-    for (i=0;i<win.childNodes.length;i++)
-    {
-      var child = win.childNodes[i]; // get span within a
-      if (child.className=='SelectItem')
-      {
-        count++;
-      }
-    }
-    return count;
-  }
-
-  this.SelectItemSet = function(id)
-  {
-    var i,j=0;
-    var win=this.DOMSearchSelectWindow();
-    for (i=0;i<win.childNodes.length;i++)
-    {
-      var child = win.childNodes[i]; // get span within a
-      if (child.className=='SelectItem')
-      {
-        var node = child.firstChild;
-        if (j==id)
-        {
-          node.innerHTML='&#8226;';
-        }
-        else
-        {
-          node.innerHTML='&#160;';
-        }
-        j++;
-      }
-    }
-  }
-
-  // Called when an search filter selection is made.
-  // set item with index id as the active item
-  this.OnSelectItem = function(id)
-  {
-    this.searchIndex = id;
-    this.SelectItemSet(id);
-    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
-    if (searchValue!="" && this.searchActive) // something was found -> do a search
-    {
-      this.Search();
-    }
-  }
-
-  this.OnSearchSelectKey = function(evt)
-  {
-    var e = (evt) ? evt : window.event; // for IE
-    if (e.keyCode==40 && this.searchIndex<this.SelectItemCount()) // Down
-    {
-      this.searchIndex++;
-      this.OnSelectItem(this.searchIndex);
-    }
-    else if (e.keyCode==38 && this.searchIndex>0) // Up
-    {
-      this.searchIndex--;
-      this.OnSelectItem(this.searchIndex);
-    }
-    else if (e.keyCode==13 || e.keyCode==27)
-    {
-      this.OnSelectItem(this.searchIndex);
-      this.CloseSelectionWindow();
-      this.DOMSearchField().focus();
-    }
-    return false;
-  }
-
-  // --------- Actions
-
-  // Closes the results window.
-  this.CloseResultsWindow = function()
-  {
-    this.DOMPopupSearchResultsWindow().style.display = 'none';
-    this.DOMSearchClose().style.display = 'none';
-    this.Activate(false);
-  }
-
-  this.CloseSelectionWindow = function()
-  {
-    this.DOMSearchSelectWindow().style.display = 'none';
-  }
-
-  // Performs a search.
-  this.Search = function()
-  {
-    this.keyTimeout = 0;
-
-    // strip leading whitespace
-    var searchValue = this.DOMSearchField().value.replace(/^ +/, "");
-
-    var code = searchValue.toLowerCase().charCodeAt(0);
-    var idxChar = searchValue.substr(0, 1).toLowerCase();
-    if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) // surrogate pair
-    {
-      idxChar = searchValue.substr(0, 2);
-    }
-
-    var resultsPage;
-    var resultsPageWithSearch;
-    var hasResultsPage;
-
-    var idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar);
-    if (idx!=-1)
-    {
-       var hexCode=idx.toString(16);
-       resultsPage = this.resultsPath + '/' + indexSectionNames[this.searchIndex] + '_' + hexCode + this.extension;
-       resultsPageWithSearch = resultsPage+'?'+escape(searchValue);
-       hasResultsPage = true;
-    }
-    else // nothing available for this search term
-    {
-       resultsPage = this.resultsPath + '/nomatches' + this.extension;
-       resultsPageWithSearch = resultsPage;
-       hasResultsPage = false;
-    }
-
-    window.frames.MSearchResults.location = resultsPageWithSearch;
-    var domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow();
-
-    if (domPopupSearchResultsWindow.style.display!='block')
-    {
-       var domSearchBox = this.DOMSearchBox();
-       this.DOMSearchClose().style.display = 'inline-block';
-       if (this.insideFrame)
-       {
-         var domPopupSearchResults = this.DOMPopupSearchResults();
-         domPopupSearchResultsWindow.style.position = 'relative';
-         domPopupSearchResultsWindow.style.display  = 'block';
-         var width = document.body.clientWidth - 8; // the -8 is for IE :-(
-         domPopupSearchResultsWindow.style.width    = width + 'px';
-         domPopupSearchResults.style.width          = width + 'px';
-       }
-       else
-       {
-         var domPopupSearchResults = this.DOMPopupSearchResults();
-         var left = getXPos(domSearchBox) + 150; // domSearchBox.offsetWidth;
-         var top  = getYPos(domSearchBox) + 20;  // domSearchBox.offsetHeight + 1;
-         domPopupSearchResultsWindow.style.display = 'block';
-         left -= domPopupSearchResults.offsetWidth;
-         domPopupSearchResultsWindow.style.top     = top  + 'px';
-         domPopupSearchResultsWindow.style.left    = left + 'px';
-       }
-    }
-
-    this.lastSearchValue = searchValue;
-    this.lastResultsPage = resultsPage;
-  }
-
-  // -------- Activation Functions
-
-  // Activates or deactivates the search panel, resetting things to
-  // their default values if necessary.
-  this.Activate = function(isActive)
-  {
-    if (isActive || // open it
-        this.DOMPopupSearchResultsWindow().style.display == 'block'
-       )
-    {
-      this.DOMSearchBox().className = 'MSearchBoxActive';
-
-      var searchField = this.DOMSearchField();
-
-      if (searchField.value == this.searchLabel) // clear "Search" term upon entry
-      {
-        searchField.value = '';
-        this.searchActive = true;
-      }
-    }
-    else if (!isActive) // directly remove the panel
-    {
-      this.DOMSearchBox().className = 'MSearchBoxInactive';
-      this.DOMSearchField().value   = this.searchLabel;
-      this.searchActive             = false;
-      this.lastSearchValue          = ''
-      this.lastResultsPage          = '';
-    }
-  }
-}
-
-// -----------------------------------------------------------------------
-
-// The class that handles everything on the search results page.
-function SearchResults(name)
-{
-    // The number of matches from the last run of <Search()>.
-    this.lastMatchCount = 0;
-    this.lastKey = 0;
-    this.repeatOn = false;
-
-    // Toggles the visibility of the passed element ID.
-    this.FindChildElement = function(id)
-    {
-      var parentElement = document.getElementById(id);
-      var element = parentElement.firstChild;
-
-      while (element && element!=parentElement)
-      {
-        if (element.nodeName.toLowerCase() == 'div' && element.className == 'SRChildren')
-        {
-          return element;
-        }
-
-        if (element.nodeName.toLowerCase() == 'div' && element.hasChildNodes())
-        {
-           element = element.firstChild;
-        }
-        else if (element.nextSibling)
-        {
-           element = element.nextSibling;
-        }
-        else
-        {
-          do
-          {
-            element = element.parentNode;
-          }
-          while (element && element!=parentElement && !element.nextSibling);
-
-          if (element && element!=parentElement)
-          {
-            element = element.nextSibling;
-          }
-        }
-      }
-    }
-
-    this.Toggle = function(id)
-    {
-      var element = this.FindChildElement(id);
-      if (element)
-      {
-        if (element.style.display == 'block')
-        {
-          element.style.display = 'none';
-        }
-        else
-        {
-          element.style.display = 'block';
-        }
-      }
-    }
-
-    // Searches for the passed string.  If there is no parameter,
-    // it takes it from the URL query.
-    //
-    // Always returns true, since other documents may try to call it
-    // and that may or may not be possible.
-    this.Search = function(search)
-    {
-      if (!search) // get search word from URL
-      {
-        search = window.location.search;
-        search = search.substring(1);  // Remove the leading '?'
-        search = unescape(search);
-      }
-
-      search = search.replace(/^ +/, ""); // strip leading spaces
-      search = search.replace(/ +$/, ""); // strip trailing spaces
-      search = search.toLowerCase();
-      search = convertToId(search);
-
-      var resultRows = document.getElementsByTagName("div");
-      var matches = 0;
-
-      var i = 0;
-      while (i < resultRows.length)
-      {
-        var row = resultRows.item(i);
-        if (row.className == "SRResult")
-        {
-          var rowMatchName = row.id.toLowerCase();
-          rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_'
-
-          if (search.length<=rowMatchName.length &&
-             rowMatchName.substr(0, search.length)==search)
-          {
-            row.style.display = 'block';
-            matches++;
-          }
-          else
-          {
-            row.style.display = 'none';
-          }
-        }
-        i++;
-      }
-      document.getElementById("Searching").style.display='none';
-      if (matches == 0) // no results
-      {
-        document.getElementById("NoMatches").style.display='block';
-      }
-      else // at least one result
-      {
-        document.getElementById("NoMatches").style.display='none';
-      }
-      this.lastMatchCount = matches;
-      return true;
-    }
-
-    // return the first item with index index or higher that is visible
-    this.NavNext = function(index)
-    {
-      var focusItem;
-      while (1)
-      {
-        var focusName = 'Item'+index;
-        focusItem = document.getElementById(focusName);
-        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
-        {
-          break;
-        }
-        else if (!focusItem) // last element
-        {
-          break;
-        }
-        focusItem=null;
-        index++;
-      }
-      return focusItem;
-    }
-
-    this.NavPrev = function(index)
-    {
-      var focusItem;
-      while (1)
-      {
-        var focusName = 'Item'+index;
-        focusItem = document.getElementById(focusName);
-        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
-        {
-          break;
-        }
-        else if (!focusItem) // last element
-        {
-          break;
-        }
-        focusItem=null;
-        index--;
-      }
-      return focusItem;
-    }
-
-    this.ProcessKeys = function(e)
-    {
-      if (e.type == "keydown")
-      {
-        this.repeatOn = false;
-        this.lastKey = e.keyCode;
-      }
-      else if (e.type == "keypress")
-      {
-        if (!this.repeatOn)
-        {
-          if (this.lastKey) this.repeatOn = true;
-          return false; // ignore first keypress after keydown
-        }
-      }
-      else if (e.type == "keyup")
-      {
-        this.lastKey = 0;
-        this.repeatOn = false;
-      }
-      return this.lastKey!=0;
-    }
-
-    this.Nav = function(evt,itemIndex)
-    {
-      var e  = (evt) ? evt : window.event; // for IE
-      if (e.keyCode==13) return true;
-      if (!this.ProcessKeys(e)) return false;
-
-      if (this.lastKey==38) // Up
-      {
-        var newIndex = itemIndex-1;
-        var focusItem = this.NavPrev(newIndex);
-        if (focusItem)
-        {
-          var child = this.FindChildElement(focusItem.parentNode.parentNode.id);
-          if (child && child.style.display == 'block') // children visible
-          {
-            var n=0;
-            var tmpElem;
-            while (1) // search for last child
-            {
-              tmpElem = document.getElementById('Item'+newIndex+'_c'+n);
-              if (tmpElem)
-              {
-                focusItem = tmpElem;
-              }
-              else // found it!
-              {
-                break;
-              }
-              n++;
-            }
-          }
-        }
-        if (focusItem)
-        {
-          focusItem.focus();
-        }
-        else // return focus to search field
-        {
-           parent.document.getElementById("MSearchField").focus();
-        }
-      }
-      else if (this.lastKey==40) // Down
-      {
-        var newIndex = itemIndex+1;
-        var focusItem;
-        var item = document.getElementById('Item'+itemIndex);
-        var elem = this.FindChildElement(item.parentNode.parentNode.id);
-        if (elem && elem.style.display == 'block') // children visible
-        {
-          focusItem = document.getElementById('Item'+itemIndex+'_c0');
-        }
-        if (!focusItem) focusItem = this.NavNext(newIndex);
-        if (focusItem)  focusItem.focus();
-      }
-      else if (this.lastKey==39) // Right
-      {
-        var item = document.getElementById('Item'+itemIndex);
-        var elem = this.FindChildElement(item.parentNode.parentNode.id);
-        if (elem) elem.style.display = 'block';
-      }
-      else if (this.lastKey==37) // Left
-      {
-        var item = document.getElementById('Item'+itemIndex);
-        var elem = this.FindChildElement(item.parentNode.parentNode.id);
-        if (elem) elem.style.display = 'none';
-      }
-      else if (this.lastKey==27) // Escape
-      {
-        parent.searchBox.CloseResultsWindow();
-        parent.document.getElementById("MSearchField").focus();
-      }
-      else if (this.lastKey==13) // Enter
-      {
-        return true;
-      }
-      return false;
-    }
-
-    this.NavChild = function(evt,itemIndex,childIndex)
-    {
-      var e  = (evt) ? evt : window.event; // for IE
-      if (e.keyCode==13) return true;
-      if (!this.ProcessKeys(e)) return false;
-
-      if (this.lastKey==38) // Up
-      {
-        if (childIndex>0)
-        {
-          var newIndex = childIndex-1;
-          document.getElementById('Item'+itemIndex+'_c'+newIndex).focus();
-        }
-        else // already at first child, jump to parent
-        {
-          document.getElementById('Item'+itemIndex).focus();
-        }
-      }
-      else if (this.lastKey==40) // Down
-      {
-        var newIndex = childIndex+1;
-        var elem = document.getElementById('Item'+itemIndex+'_c'+newIndex);
-        if (!elem) // last child, jump to parent next parent
-        {
-          elem = this.NavNext(itemIndex+1);
-        }
-        if (elem)
-        {
-          elem.focus();
-        }
-      }
-      else if (this.lastKey==27) // Escape
-      {
-        parent.searchBox.CloseResultsWindow();
-        parent.document.getElementById("MSearchField").focus();
-      }
-      else if (this.lastKey==13) // Enter
-      {
-        return true;
-      }
-      return false;
-    }
-}
-
-function setKeyActions(elem,action)
-{
-  elem.setAttribute('onkeydown',action);
-  elem.setAttribute('onkeypress',action);
-  elem.setAttribute('onkeyup',action);
-}
-
-function setClassAttr(elem,attr)
-{
-  elem.setAttribute('class',attr);
-  elem.setAttribute('className',attr);
-}
-
-function createResults()
-{
-  var results = document.getElementById("SRResults");
-  for (var e=0; e<searchData.length; e++)
-  {
-    var id = searchData[e][0];
-    var srResult = document.createElement('div');
-    srResult.setAttribute('id','SR_'+id);
-    setClassAttr(srResult,'SRResult');
-    var srEntry = document.createElement('div');
-    setClassAttr(srEntry,'SREntry');
-    var srLink = document.createElement('a');
-    srLink.setAttribute('id','Item'+e);
-    setKeyActions(srLink,'return searchResults.Nav(event,'+e+')');
-    setClassAttr(srLink,'SRSymbol');
-    srLink.innerHTML = searchData[e][1][0];
-    srEntry.appendChild(srLink);
-    if (searchData[e][1].length==2) // single result
-    {
-      srLink.setAttribute('href',searchData[e][1][1][0]);
-      if (searchData[e][1][1][1])
-      {
-       srLink.setAttribute('target','_parent');
-      }
-      var srScope = document.createElement('span');
-      setClassAttr(srScope,'SRScope');
-      srScope.innerHTML = searchData[e][1][1][2];
-      srEntry.appendChild(srScope);
-    }
-    else // multiple results
-    {
-      srLink.setAttribute('href','javascript:searchResults.Toggle("SR_'+id+'")');
-      var srChildren = document.createElement('div');
-      setClassAttr(srChildren,'SRChildren');
-      for (var c=0; c<searchData[e][1].length-1; c++)
-      {
-        var srChild = document.createElement('a');
-        srChild.setAttribute('id','Item'+e+'_c'+c);
-        setKeyActions(srChild,'return searchResults.NavChild(event,'+e+','+c+')');
-        setClassAttr(srChild,'SRScope');
-        srChild.setAttribute('href',searchData[e][1][c+1][0]);
-        if (searchData[e][1][c+1][1])
-        {
-         srChild.setAttribute('target','_parent');
-        }
-        srChild.innerHTML = searchData[e][1][c+1][2];
-        srChildren.appendChild(srChild);
-      }
-      srEntry.appendChild(srChildren);
-    }
-    srResult.appendChild(srEntry);
-    results.appendChild(srResult);
-  }
-}
-
-function init_search()
-{
-  var results = document.getElementById("MSearchSelectWindow");
-  for (var key in indexSectionLabels)
-  {
-    var link = document.createElement('a');
-    link.setAttribute('class','SelectItem');
-    link.setAttribute('onclick','searchBox.OnSelectItem('+key+')');
-    link.href='javascript:void(0)';
-    link.innerHTML='<span class="SelectionMark">&#160;</span>'+indexSectionLabels[key];
-    results.appendChild(link);
-  }
-  searchBox.OnSelectItem(0);
-}
-/* @license-end */
diff --git a/html/search/search_l.png b/html/search/search_l.png
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diff --git a/html/search/search_m.png b/html/search/search_m.png
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diff --git a/html/search/searchdata.js b/html/search/searchdata.js
deleted file mode 100644
index bb51d93..0000000
--- a/html/search/searchdata.js
+++ /dev/null
@@ -1,42 +0,0 @@
-var indexSectionsWithContent =
-{
-  0: "abcdefghijklmnopqrstuvwxyz~",
-  1: "abcdefghilmnprstuvwxz",
-  2: "bcdefgilmnprstuv",
-  3: "bcdefgilmnprstuvw",
-  4: "abcdefghilmnprstuvwxy~",
-  5: "abcdefghijklmnopqrstuvwxyz",
-  6: "asv",
-  7: "l",
-  8: "c",
-  9: "bcdeilmnprstv"
-};
-
-var indexSectionNames =
-{
-  0: "all",
-  1: "classes",
-  2: "namespaces",
-  3: "files",
-  4: "functions",
-  5: "variables",
-  6: "typedefs",
-  7: "enums",
-  8: "defines",
-  9: "pages"
-};
-
-var indexSectionLabels =
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-<p>Contains module <a class="el" href="namespaceshared__data.html">shared_data</a>.  
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4ae8c6b693a5004b362a9ce4ca1aaaf6">shared_data::nsp</a></td></tr>
-<tr class="memdesc:a4ae8c6b693a5004b362a9ce4ca1aaaf6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total radial grid size in the VMEC region. <br /></td></tr>
-<tr class="separator:a4ae8c6b693a5004b362a9ce4ca1aaaf6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="memItemLeft" align="right" valign="top"><a id="a33e8c2a3a278ef7f959c79164ecf09a4"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a33e8c2a3a278ef7f959c79164ecf09a4">shared_data::nprecon</a></td></tr>
-<tr class="memdesc:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Preconditioner flag. <br /></td></tr>
-<tr class="separator:a33e8c2a3a278ef7f959c79164ecf09a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7497643de2848aaf6a144842b10a3315"><td class="memItemLeft" align="right" valign="top"><a id="a7497643de2848aaf6a144842b10a3315"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a7497643de2848aaf6a144842b10a3315">shared_data::nprecon_type</a></td></tr>
-<tr class="memdesc:a7497643de2848aaf6a144842b10a3315"><td class="mdescLeft">&#160;</td><td class="mdescRight">Preconditioner type. <br /></td></tr>
-<tr class="separator:a7497643de2848aaf6a144842b10a3315"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a17742427a611e4fbdf91af6885a78902"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a17742427a611e4fbdf91af6885a78902">shared_data::ngmres_type</a> = gmres</td></tr>
-<tr class="memdesc:a17742427a611e4fbdf91af6885a78902"><td class="mdescLeft">&#160;</td><td class="mdescRight">GMRES control flag.  <a href="namespaceshared__data.html#a17742427a611e4fbdf91af6885a78902">More...</a><br /></td></tr>
-<tr class="separator:a17742427a611e4fbdf91af6885a78902"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83">shared_data::iortho</a> = 3</td></tr>
-<tr class="memdesc:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="mdescLeft">&#160;</td><td class="mdescRight">Orthogonalization in GMRES.  <a href="namespaceshared__data.html#a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83">More...</a><br /></td></tr>
-<tr class="separator:a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abc2e97d9043baaf076efe1e5034b7f84"><td class="memItemLeft" align="right" valign="top"><a id="abc2e97d9043baaf076efe1e5034b7f84"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#abc2e97d9043baaf076efe1e5034b7f84">shared_data::hesspass_test</a> = -1</td></tr>
-<tr class="memdesc:abc2e97d9043baaf076efe1e5034b7f84"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dump block and data files for testing. <br /></td></tr>
-<tr class="separator:abc2e97d9043baaf076efe1e5034b7f84"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a361402311d7f8d1d5a71e3788015f4de"><td class="memItemLeft" align="right" valign="top"><a id="a361402311d7f8d1d5a71e3788015f4de"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a361402311d7f8d1d5a71e3788015f4de">shared_data::in_hess_nfunct</a></td></tr>
-<tr class="memdesc:a361402311d7f8d1d5a71e3788015f4de"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a361402311d7f8d1d5a71e3788015f4de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="memItemLeft" align="right" valign="top"><a id="a4a4aba0c35915ced4f6a3cbcb2d7c13f"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4a4aba0c35915ced4f6a3cbcb2d7c13f">shared_data::out_hess_nfunct</a></td></tr>
-<tr class="memdesc:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a4a4aba0c35915ced4f6a3cbcb2d7c13f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="memItemLeft" align="right" valign="top"><a id="a0661d0f76647ea92b0d6ea69d1bc32cc"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0661d0f76647ea92b0d6ea69d1bc32cc">shared_data::mupar_test</a></td></tr>
-<tr class="memdesc:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME UNKNOWN. <br /></td></tr>
-<tr class="separator:a0661d0f76647ea92b0d6ea69d1bc32cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="memItemLeft" align="right" valign="top"><a id="ae87ec7ee4ec725ed2d9c707a1396a2de"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ae87ec7ee4ec725ed2d9c707a1396a2de">shared_data::fsq_total</a></td></tr>
-<tr class="memdesc:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 WITH column scaling. <br /></td></tr>
-<tr class="separator:ae87ec7ee4ec725ed2d9c707a1396a2de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64a148b306f5aa1ed22767f78da22e37"><td class="memItemLeft" align="right" valign="top"><a id="a64a148b306f5aa1ed22767f78da22e37"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a64a148b306f5aa1ed22767f78da22e37">shared_data::fsq_total1</a></td></tr>
-<tr class="memdesc:a64a148b306f5aa1ed22767f78da22e37"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 WITHOUT column scaling. <br /></td></tr>
-<tr class="separator:a64a148b306f5aa1ed22767f78da22e37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="memItemLeft" align="right" valign="top"><a id="ab4e75e1fc1ed72aef88d3d5fe0d80b2d"></a>
-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ab4e75e1fc1ed72aef88d3d5fe0d80b2d">shared_data::xc</a></td></tr>
-<tr class="memdesc:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D array of Fourier mode displacement components. <br /></td></tr>
-<tr class="separator:ab4e75e1fc1ed72aef88d3d5fe0d80b2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="memItemLeft" align="right" valign="top"><a id="abfb92ff7d52f4380ae1e5a0d633dee7e"></a>
-real(dp), dimension(:), allocatable, target&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#abfb92ff7d52f4380ae1e5a0d633dee7e">shared_data::gc</a></td></tr>
-<tr class="memdesc:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of Fourier mode MHD force components <br /></td></tr>
-<tr class="separator:abfb92ff7d52f4380ae1e5a0d633dee7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3745e9a9c2c7c59a2245597b24189c7f"><td class="memItemLeft" align="right" valign="top"><a id="a3745e9a9c2c7c59a2245597b24189c7f"></a>
-real(dp), dimension(:), allocatable, target&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a3745e9a9c2c7c59a2245597b24189c7f">shared_data::gc_sup</a></td></tr>
-<tr class="memdesc:a3745e9a9c2c7c59a2245597b24189c7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of Fourier mode MHD force components, FIXME Check if this is really needed. <br /></td></tr>
-<tr class="separator:a3745e9a9c2c7c59a2245597b24189c7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a836da8f25468546ad58fd57d97f185c3"><td class="memItemLeft" align="right" valign="top"><a id="a836da8f25468546ad58fd57d97f185c3"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a836da8f25468546ad58fd57d97f185c3">shared_data::buv_res</a></td></tr>
-<tr class="memdesc:a836da8f25468546ad58fd57d97f185c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Resonant magnetic field perturbation. <br /></td></tr>
-<tr class="separator:a836da8f25468546ad58fd57d97f185c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="memItemLeft" align="right" valign="top"><a id="a78f1ef4a9077f3e374ba136f0477fcf5"></a>
-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a78f1ef4a9077f3e374ba136f0477fcf5">shared_data::xc0</a></td></tr>
-<tr class="memdesc:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved fouier displacements. <br /></td></tr>
-<tr class="separator:a78f1ef4a9077f3e374ba136f0477fcf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab00894e982c488d364e27c139f6c6488"><td class="memItemLeft" align="right" valign="top"><a id="ab00894e982c488d364e27c139f6c6488"></a>
-real(dp), dimension(:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ab00894e982c488d364e27c139f6c6488">shared_data::gc0</a></td></tr>
-<tr class="memdesc:ab00894e982c488d364e27c139f6c6488"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved fouier MHD forces. <br /></td></tr>
-<tr class="separator:ab00894e982c488d364e27c139f6c6488"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae1ff7bcb6fd97f19a43689b0b5d0f193"><td class="memItemLeft" align="right" valign="top">real(dp), dimension(:,:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ae1ff7bcb6fd97f19a43689b0b5d0f193">shared_data::col_scale</a></td></tr>
-<tr class="memdesc:ae1ff7bcb6fd97f19a43689b0b5d0f193"><td class="mdescLeft">&#160;</td><td class="mdescRight">Column scaling factors.  <a href="namespaceshared__data.html#ae1ff7bcb6fd97f19a43689b0b5d0f193">More...</a><br /></td></tr>
-<tr class="separator:ae1ff7bcb6fd97f19a43689b0b5d0f193"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3538e0d55f5ff09fc913b9152a5be1ac"><td class="memItemLeft" align="right" valign="top"><a id="a3538e0d55f5ff09fc913b9152a5be1ac"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a3538e0d55f5ff09fc913b9152a5be1ac">shared_data::fsq_gmres</a></td></tr>
-<tr class="memdesc:a3538e0d55f5ff09fc913b9152a5be1ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for GMRES iterations. <br /></td></tr>
-<tr class="separator:a3538e0d55f5ff09fc913b9152a5be1ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad065d7130cde806a941afb467546c88b"><td class="memItemLeft" align="right" valign="top"><a id="ad065d7130cde806a941afb467546c88b"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ad065d7130cde806a941afb467546c88b">shared_data::fsq_lin</a></td></tr>
-<tr class="memdesc:ad065d7130cde806a941afb467546c88b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Linear |F|^2. <br /></td></tr>
-<tr class="separator:ad065d7130cde806a941afb467546c88b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad1644f3c84ff72f6f26e72243bfc2755"><td class="memItemLeft" align="right" valign="top"><a id="ad1644f3c84ff72f6f26e72243bfc2755"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ad1644f3c84ff72f6f26e72243bfc2755">shared_data::etak_tol</a></td></tr>
-<tr class="memdesc:ad1644f3c84ff72f6f26e72243bfc2755"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:ad1644f3c84ff72f6f26e72243bfc2755"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e0914dbbdfbffd1a15e99db8f9fa6cb"><td class="memItemLeft" align="right" valign="top"><a id="a0e0914dbbdfbffd1a15e99db8f9fa6cb"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0e0914dbbdfbffd1a15e99db8f9fa6cb">shared_data::levm_scale</a> = 1</td></tr>
-<tr class="memdesc:a0e0914dbbdfbffd1a15e99db8f9fa6cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a0e0914dbbdfbffd1a15e99db8f9fa6cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac49c9f28243d9fa2303dd635cdbc4b5e"><td class="memItemLeft" align="right" valign="top"><a id="ac49c9f28243d9fa2303dd635cdbc4b5e"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac49c9f28243d9fa2303dd635cdbc4b5e">shared_data::wtotal</a></td></tr>
-<tr class="memdesc:ac49c9f28243d9fa2303dd635cdbc4b5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">MHD energy sum of magnetic and thermal. <br /></td></tr>
-<tr class="separator:ac49c9f28243d9fa2303dd635cdbc4b5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea5a669987a6f60096701138b2c6694e"><td class="memItemLeft" align="right" valign="top"><a id="aea5a669987a6f60096701138b2c6694e"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aea5a669987a6f60096701138b2c6694e">shared_data::wtotal0</a></td></tr>
-<tr class="memdesc:aea5a669987a6f60096701138b2c6694e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saved MHD energy sum of magnetic and thermal. <br /></td></tr>
-<tr class="separator:aea5a669987a6f60096701138b2c6694e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a8d5133c94698b30e9aca6f4a7296e1"><td class="memItemLeft" align="right" valign="top"><a id="a0a8d5133c94698b30e9aca6f4a7296e1"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0a8d5133c94698b30e9aca6f4a7296e1">shared_data::delta_t</a></td></tr>
-<tr class="memdesc:a0a8d5133c94698b30e9aca6f4a7296e1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time step. <br /></td></tr>
-<tr class="separator:a0a8d5133c94698b30e9aca6f4a7296e1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac110d052f831d741b4308227cd276b9a"><td class="memItemLeft" align="right" valign="top"><a id="ac110d052f831d741b4308227cd276b9a"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac110d052f831d741b4308227cd276b9a">shared_data::fsqvs</a></td></tr>
-<tr class="memdesc:ac110d052f831d741b4308227cd276b9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for s components. <br /></td></tr>
-<tr class="separator:ac110d052f831d741b4308227cd276b9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8c71aa69c189259760cc60182519e4b3"><td class="memItemLeft" align="right" valign="top"><a id="a8c71aa69c189259760cc60182519e4b3"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a8c71aa69c189259760cc60182519e4b3">shared_data::fsqvu</a></td></tr>
-<tr class="memdesc:a8c71aa69c189259760cc60182519e4b3"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for u components. <br /></td></tr>
-<tr class="separator:a8c71aa69c189259760cc60182519e4b3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acbce8fab7171fae05234f81cf20654ff"><td class="memItemLeft" align="right" valign="top"><a id="acbce8fab7171fae05234f81cf20654ff"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#acbce8fab7171fae05234f81cf20654ff">shared_data::fsqvv</a></td></tr>
-<tr class="memdesc:acbce8fab7171fae05234f81cf20654ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">|F|^2 for v components. <br /></td></tr>
-<tr class="separator:acbce8fab7171fae05234f81cf20654ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0961e17161781c386896ceb97b614fca"><td class="memItemLeft" align="right" valign="top"><a id="a0961e17161781c386896ceb97b614fca"></a>
-real(dp), dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0961e17161781c386896ceb97b614fca">shared_data::ste</a></td></tr>
-<tr class="memdesc:a0961e17161781c386896ceb97b614fca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Spectral Truncation RMS error,. <br /></td></tr>
-<tr class="separator:a0961e17161781c386896ceb97b614fca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32b30a1868d788df49ddf6ceb676fad8"><td class="memItemLeft" align="right" valign="top"><a id="a32b30a1868d788df49ddf6ceb676fad8"></a>
-real(dp), dimension(12)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a32b30a1868d788df49ddf6ceb676fad8">shared_data::bs0</a></td></tr>
-<tr class="memdesc:a32b30a1868d788df49ddf6ceb676fad8"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a32b30a1868d788df49ddf6ceb676fad8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84e0aa451ddaa0a2fd1d0768fd81bed3"><td class="memItemLeft" align="right" valign="top"><a id="a84e0aa451ddaa0a2fd1d0768fd81bed3"></a>
-real(dp), dimension(12)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a84e0aa451ddaa0a2fd1d0768fd81bed3">shared_data::bu0</a></td></tr>
-<tr class="memdesc:a84e0aa451ddaa0a2fd1d0768fd81bed3"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
-<tr class="separator:a84e0aa451ddaa0a2fd1d0768fd81bed3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5313ff897194d604ad7cac62ac45a9d9"><td class="memItemLeft" align="right" valign="top"><a id="a5313ff897194d604ad7cac62ac45a9d9"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a5313ff897194d604ad7cac62ac45a9d9">shared_data::bsbu_ratio_s</a></td></tr>
-<tr class="memdesc:a5313ff897194d604ad7cac62ac45a9d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:aa7e55c7f97f403b98c7a08f89ef3bda9"><td class="memItemLeft" align="right" valign="top"><a id="aa7e55c7f97f403b98c7a08f89ef3bda9"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aa7e55c7f97f403b98c7a08f89ef3bda9">shared_data::jsju_ratio_s</a></td></tr>
-<tr class="memdesc:aa7e55c7f97f403b98c7a08f89ef3bda9"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a48b33ca731e8daf55ba6805e1fe9bf1d"><td class="memItemLeft" align="right" valign="top"><a id="a48b33ca731e8daf55ba6805e1fe9bf1d"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a48b33ca731e8daf55ba6805e1fe9bf1d">shared_data::bsbu_ratio_a</a></td></tr>
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-<tr class="memitem:a5064d1d6c5e7caede14985f8cd91a03f"><td class="memItemLeft" align="right" valign="top"><a id="a5064d1d6c5e7caede14985f8cd91a03f"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a5064d1d6c5e7caede14985f8cd91a03f">shared_data::jsju_ratio_a</a></td></tr>
-<tr class="memdesc:a5064d1d6c5e7caede14985f8cd91a03f"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a194b5aff743f47131f8c3646adc35a2b"><td class="memItemLeft" align="right" valign="top"><a id="a194b5aff743f47131f8c3646adc35a2b"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a194b5aff743f47131f8c3646adc35a2b">shared_data::scale_u</a></td></tr>
-<tr class="memdesc:a194b5aff743f47131f8c3646adc35a2b"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a586d2f5eed2fe8372726edd47133a6c8"><td class="memItemLeft" align="right" valign="top"><a id="a586d2f5eed2fe8372726edd47133a6c8"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a586d2f5eed2fe8372726edd47133a6c8">shared_data::r1_i</a></td></tr>
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-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a500ed2566486b349325e42568464b380">shared_data::z1_i</a></td></tr>
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-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a8b7d4357fbc8cc9cc02c43e556bdeb35">shared_data::ru_i</a></td></tr>
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-<tr class="memitem:ac5ee632cf8cf72462c05efd2790d0e4d"><td class="memItemLeft" align="right" valign="top"><a id="ac5ee632cf8cf72462c05efd2790d0e4d"></a>
-real(dp), dimension(:,:,:), allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac5ee632cf8cf72462c05efd2790d0e4d">shared_data::zv_i</a></td></tr>
-<tr class="memdesc:ac5ee632cf8cf72462c05efd2790d0e4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">dZ/dv coordinates of the computational grid. <br /></td></tr>
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-<tr class="memitem:a4014f588f274ad3d1fb1f715ae85de6d"><td class="memItemLeft" align="right" valign="top"><a id="a4014f588f274ad3d1fb1f715ae85de6d"></a>
-real(dp)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a4014f588f274ad3d1fb1f715ae85de6d">shared_data::jsupvdota</a></td></tr>
-<tr class="memdesc:a4014f588f274ad3d1fb1f715ae85de6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a87573fa1ab016ed2588da37ccca86835"><td class="memItemLeft" align="right" valign="top"><a id="a87573fa1ab016ed2588da37ccca86835"></a>
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-<tr class="memdesc:a87573fa1ab016ed2588da37ccca86835"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for stellator symmetric s component on full grid. <br /></td></tr>
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-<tr class="memitem:a33becb95782782d593d234c2e6a086e6"><td class="memItemLeft" align="right" valign="top"><a id="a33becb95782782d593d234c2e6a086e6"></a>
-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a33becb95782782d593d234c2e6a086e6">shared_data::asubsmncf</a></td></tr>
-<tr class="memdesc:a33becb95782782d593d234c2e6a086e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for non-stellator symmetric s component on full grid. <br /></td></tr>
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-<tr class="memitem:ac0f10bb1709996044a49dbcc782bebde"><td class="memItemLeft" align="right" valign="top"><a id="ac0f10bb1709996044a49dbcc782bebde"></a>
-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#ac0f10bb1709996044a49dbcc782bebde">shared_data::asubumncf</a></td></tr>
-<tr class="memdesc:ac0f10bb1709996044a49dbcc782bebde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for stellator symmetric u component on full grid. <br /></td></tr>
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-<tr class="memitem:a8204cbbc6aecc2985b44ef64e2de4806"><td class="memItemLeft" align="right" valign="top"><a id="a8204cbbc6aecc2985b44ef64e2de4806"></a>
-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a8204cbbc6aecc2985b44ef64e2de4806">shared_data::asubumnsf</a></td></tr>
-<tr class="memdesc:a8204cbbc6aecc2985b44ef64e2de4806"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for non-stellator symmetric u component on full grid. <br /></td></tr>
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-<tr class="memitem:a0a3336731ffa506840e6cc8d78f89f68"><td class="memItemLeft" align="right" valign="top"><a id="a0a3336731ffa506840e6cc8d78f89f68"></a>
-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0a3336731ffa506840e6cc8d78f89f68">shared_data::asubvmncf</a></td></tr>
-<tr class="memdesc:a0a3336731ffa506840e6cc8d78f89f68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for stellator symmetric v component on full grid. <br /></td></tr>
-<tr class="separator:a0a3336731ffa506840e6cc8d78f89f68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca9fad6a7edf01ae301be04653e258a7"><td class="memItemLeft" align="right" valign="top"><a id="aca9fad6a7edf01ae301be04653e258a7"></a>
-real(dp), dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aca9fad6a7edf01ae301be04653e258a7">shared_data::asubvmnsf</a></td></tr>
-<tr class="memdesc:aca9fad6a7edf01ae301be04653e258a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Covariant vector potential for non-stellator symmetric v component on full grid. <br /></td></tr>
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-<tr class="memitem:aece08127d9c525bdc59f0fa681c38531"><td class="memItemLeft" align="right" valign="top"><a id="aece08127d9c525bdc59f0fa681c38531"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#aece08127d9c525bdc59f0fa681c38531">shared_data::l_push_edge</a></td></tr>
-<tr class="memdesc:aece08127d9c525bdc59f0fa681c38531"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solve u,v components at s=1. <br /></td></tr>
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-<tr class="memitem:a74603b95c2f34002c89acdedbd736c34"><td class="memItemLeft" align="right" valign="top"><a id="a74603b95c2f34002c89acdedbd736c34"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a74603b95c2f34002c89acdedbd736c34">shared_data::l_push_s</a></td></tr>
-<tr class="memdesc:a74603b95c2f34002c89acdedbd736c34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solve for s component at origin. <br /></td></tr>
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-<tr class="memitem:a8b243dd08c54fb79e1aa91bb0b6fb87e"><td class="memItemLeft" align="right" valign="top"><a id="a8b243dd08c54fb79e1aa91bb0b6fb87e"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a8b243dd08c54fb79e1aa91bb0b6fb87e">shared_data::l_push_u</a></td></tr>
-<tr class="memdesc:a8b243dd08c54fb79e1aa91bb0b6fb87e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solve for u component at origin. <br /></td></tr>
-<tr class="separator:a8b243dd08c54fb79e1aa91bb0b6fb87e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af771b1e74df5b57a9d2c521318f2c4f0"><td class="memItemLeft" align="right" valign="top"><a id="af771b1e74df5b57a9d2c521318f2c4f0"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#af771b1e74df5b57a9d2c521318f2c4f0">shared_data::l_push_v</a></td></tr>
-<tr class="memdesc:af771b1e74df5b57a9d2c521318f2c4f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solve for v component at origin. <br /></td></tr>
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-<tr class="memitem:a6545c83fcebbb90a389e3046ca3cd2f6"><td class="memItemLeft" align="right" valign="top"><a id="a6545c83fcebbb90a389e3046ca3cd2f6"></a>
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-<tr class="memdesc:a6545c83fcebbb90a389e3046ca3cd2f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use linearized forces. <br /></td></tr>
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-<tr class="memitem:a8599b59368574618a5632c3c5d45fc9e"><td class="memItemLeft" align="right" valign="top"><a id="a8599b59368574618a5632c3c5d45fc9e"></a>
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-<tr class="memdesc:a8599b59368574618a5632c3c5d45fc9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">FIXME: UNKNOWN. <br /></td></tr>
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-<tr class="memitem:a8db245a5914674d3a66facf50cba3d9c"><td class="memItemLeft" align="right" valign="top"><a id="a8db245a5914674d3a66facf50cba3d9c"></a>
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-<tr class="memdesc:a8db245a5914674d3a66facf50cba3d9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute MHD energy. <br /></td></tr>
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-<tr class="memitem:a6dfe77af64d8bba5bf6ba9d2d055bbcd"><td class="memItemLeft" align="right" valign="top"><a id="a6dfe77af64d8bba5bf6ba9d2d055bbcd"></a>
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-<tr class="memdesc:a6dfe77af64d8bba5bf6ba9d2d055bbcd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute |F|^2. <br /></td></tr>
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-<tr class="memitem:a0e48039f239cd70fa0b9fc7dd7877769"><td class="memItemLeft" align="right" valign="top"><a id="a0e48039f239cd70fa0b9fc7dd7877769"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#a0e48039f239cd70fa0b9fc7dd7877769">shared_data::l_printoriginforces</a> = .false.</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceshared__data.html#afa14a74a802656caa1f97eff9a064b84">shared_data::l_init_state</a></td></tr>
-<tr class="memdesc:afa14a74a802656caa1f97eff9a064b84"><td class="mdescLeft">&#160;</td><td class="mdescRight">Store initial field/pressure state. <br /></td></tr>
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-<p>Contains main routines for SIESTA.  
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-<tr class="memdesc:aa38a6f5e7ea941bfabcb10353f795484"><td class="mdescLeft">&#160;</td><td class="mdescRight">SIESTA is an ideal MHD equilibrium code that allows for islands and stocastic fields. SIESTA has been created with contributions from.  <a href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">More...</a><br /></td></tr>
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-<div class="textblock"><p>Contains main routines for SIESTA. </p>
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-<p>SIESTA is an ideal MHD equilibrium code that allows for islands and stocastic fields. SIESTA has been created with contributions from. </p>
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-Sudip Seal </dd>
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-Mark Cianciosa</dd></dl>
-<p>The theory behind SIESTA is outlined in S.P. Hirshman et. al. <a href="https://doi.org/10.1063/1.3597155">https://doi.org/10.1063/1.3597155</a> The design of the parallelization method is outlined in S.K. Seal at. al. <a href="https://doi.org/10.1002/cpe.2919">https://doi.org/10.1002/cpe.2919</a></p>
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-<p>SIESTA Main program.</p>
-<p>Highest level SIESTA routine. </p>
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-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<p>Contains module <a class="el" href="namespacesiesta__equilibrium.html">siesta_equilibrium</a>.  
-<a href="#details">More...</a></p>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa03917edd53b3948f4e8244f8a7f751e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32d246bc60798c59b64f68e06a74c236"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a32d246bc60798c59b64f68e06a74c236">siesta_equilibrium::siesta_destruct</a> (this)</td></tr>
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-<tr class="separator:a32d246bc60798c59b64f68e06a74c236"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">siesta_equilibrium::siesta_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacesiesta__equilibrium.html#ae8c13ca064ce474f2ac8fe15d3f74595">More...</a><br /></td></tr>
-<tr class="separator:ae8c13ca064ce474f2ac8fe15d3f74595"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a77a4b6ce278dd903391c0844177c3b1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache for plasma response.  <a href="namespacesiesta__equilibrium.html#a77a4b6ce278dd903391c0844177c3b1c">More...</a><br /></td></tr>
-<tr class="separator:a77a4b6ce278dd903391c0844177c3b1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">siesta_equilibrium::siesta_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacesiesta__equilibrium.html#ad8bcfb2af6ccfc495a8f6d13065ac2a2">More...</a><br /></td></tr>
-<tr class="separator:ad8bcfb2af6ccfc495a8f6d13065ac2a2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aeacc50357fd0c9adb56459a920dbd7b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ae5a15e82b88abb835199195da719b0be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a54de6feb8b13ad7c925dc68bb9c1a4f3"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3">siesta_equilibrium::siesta_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:a54de6feb8b13ad7c925dc68bb9c1a4f3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespacesiesta__equilibrium.html#a54de6feb8b13ad7c925dc68bb9c1a4f3">More...</a><br /></td></tr>
-<tr class="separator:a54de6feb8b13ad7c925dc68bb9c1a4f3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff380751c52f470e900fb99bde7d5e60"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">siesta_equilibrium::siesta_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:aff380751c52f470e900fb99bde7d5e60"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction siesta parameter.  <a href="namespacesiesta__equilibrium.html#aff380751c52f470e900fb99bde7d5e60">More...</a><br /></td></tr>
-<tr class="separator:aff380751c52f470e900fb99bde7d5e60"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">siesta_equilibrium::siesta_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the name of a reconstruction siesta parameter.  <a href="namespacesiesta__equilibrium.html#a9db07a52ad3c5ffdc311e9fb976cf29d">More...</a><br /></td></tr>
-<tr class="separator:a9db07a52ad3c5ffdc311e9fb976cf29d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a448d412d29e7703ff89562bd5e3e54a8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8">siesta_equilibrium::siesta_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a448d412d29e7703ff89562bd5e3e54a8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#a448d412d29e7703ff89562bd5e3e54a8">More...</a><br /></td></tr>
-<tr class="separator:a448d412d29e7703ff89562bd5e3e54a8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a63a68789cb55a6459cd96a016c8eda24"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24">siesta_equilibrium::siesta_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a63a68789cb55a6459cd96a016c8eda24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a63a68789cb55a6459cd96a016c8eda24">More...</a><br /></td></tr>
-<tr class="separator:a63a68789cb55a6459cd96a016c8eda24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad68bd4d3c819bafd069caa2bb6ed6d85">siesta_equilibrium::siesta_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacesiesta__equilibrium.html#ad68bd4d3c819bafd069caa2bb6ed6d85">More...</a><br /></td></tr>
-<tr class="separator:ad68bd4d3c819bafd069caa2bb6ed6d85"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab9d801f89b6ac53588c95898b2db119d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ab9d801f89b6ac53588c95898b2db119d">siesta_equilibrium::siesta_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:ab9d801f89b6ac53588c95898b2db119d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#ab9d801f89b6ac53588c95898b2db119d">More...</a><br /></td></tr>
-<tr class="separator:ab9d801f89b6ac53588c95898b2db119d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a">siesta_equilibrium::siesta_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#aa5bbea72e955a9b46a22a5d1c5e4324a">More...</a><br /></td></tr>
-<tr class="separator:aa5bbea72e955a9b46a22a5d1c5e4324a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a56e632399cfc3288b335767ed08d1ea4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4">siesta_equilibrium::siesta_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a56e632399cfc3288b335767ed08d1ea4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a56e632399cfc3288b335767ed08d1ea4">More...</a><br /></td></tr>
-<tr class="separator:a56e632399cfc3288b335767ed08d1ea4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">siesta_equilibrium::siesta_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacesiesta__equilibrium.html#a4a8d2307b72ed538168ed75c6cfe8c05">More...</a><br /></td></tr>
-<tr class="separator:a4a8d2307b72ed538168ed75c6cfe8c05"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a363671f9a484fec5eaafa6dc4dddc927"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a363671f9a484fec5eaafa6dc4dddc927">siesta_equilibrium::siesta_get_te_radial</a> (this, s)</td></tr>
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-<tr class="separator:a363671f9a484fec5eaafa6dc4dddc927"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a60a0c3b99f3ebabcb67039e76bb6bbb4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a60a0c3b99f3ebabcb67039e76bb6bbb4">siesta_equilibrium::siesta_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
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-<tr class="separator:a60a0c3b99f3ebabcb67039e76bb6bbb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6205bad364c1f4c8082dcdf9393314c2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2">siesta_equilibrium::siesta_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a6205bad364c1f4c8082dcdf9393314c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#a6205bad364c1f4c8082dcdf9393314c2">More...</a><br /></td></tr>
-<tr class="separator:a6205bad364c1f4c8082dcdf9393314c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a428711cef00c9eaba9d9a54d6ba82118"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">siesta_equilibrium::siesta_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a428711cef00c9eaba9d9a54d6ba82118"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacesiesta__equilibrium.html#a428711cef00c9eaba9d9a54d6ba82118">More...</a><br /></td></tr>
-<tr class="separator:a428711cef00c9eaba9d9a54d6ba82118"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">siesta_equilibrium::siesta_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a12207edeb41cc4c4cae459d3c65d8b3d">More...</a><br /></td></tr>
-<tr class="separator:a12207edeb41cc4c4cae459d3c65d8b3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef">siesta_equilibrium::siesta_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacesiesta__equilibrium.html#a62ed7117acc7cfde48ec0dbc3d8388ef">More...</a><br /></td></tr>
-<tr class="separator:a62ed7117acc7cfde48ec0dbc3d8388ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6">siesta_equilibrium::siesta_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacesiesta__equilibrium.html#ad53bc0a2bb7b84357cf38b416f1b92f6">More...</a><br /></td></tr>
-<tr class="separator:ad53bc0a2bb7b84357cf38b416f1b92f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa10053169557919b41ae9bd542d668d1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">siesta_equilibrium::siesta_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:aa10053169557919b41ae9bd542d668d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacesiesta__equilibrium.html#aa10053169557919b41ae9bd542d668d1">More...</a><br /></td></tr>
-<tr class="separator:aa10053169557919b41ae9bd542d668d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a001556a88f398acce1ee5e78aa76de7b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">siesta_equilibrium::siesta_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:a001556a88f398acce1ee5e78aa76de7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a001556a88f398acce1ee5e78aa76de7b">More...</a><br /></td></tr>
-<tr class="separator:a001556a88f398acce1ee5e78aa76de7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa2d312ef8b79ab3d3a65add7e854b796"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">siesta_equilibrium::siesta_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:aa2d312ef8b79ab3d3a65add7e854b796"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespacesiesta__equilibrium.html#aa2d312ef8b79ab3d3a65add7e854b796">More...</a><br /></td></tr>
-<tr class="separator:aa2d312ef8b79ab3d3a65add7e854b796"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2eccdc619618a32b1be98be0397689ab"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">siesta_equilibrium::siesta_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a2eccdc619618a32b1be98be0397689ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a s, u=0, v=0 position.  <a href="namespacesiesta__equilibrium.html#a2eccdc619618a32b1be98be0397689ab">More...</a><br /></td></tr>
-<tr class="separator:a2eccdc619618a32b1be98be0397689ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0cdd17a4604dc78a951681eb26b7242b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">siesta_equilibrium::siesta_get_p_flux</a> (this, flux, normalize)</td></tr>
-<tr class="memdesc:a0cdd17a4604dc78a951681eb26b7242b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a flux position.  <a href="namespacesiesta__equilibrium.html#a0cdd17a4604dc78a951681eb26b7242b">More...</a><br /></td></tr>
-<tr class="separator:a0cdd17a4604dc78a951681eb26b7242b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a580d79b630d31f3b072075e968173a8b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a580d79b630d31f3b072075e968173a8b">siesta_equilibrium::siesta_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a580d79b630d31f3b072075e968173a8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespacesiesta__equilibrium.html#a580d79b630d31f3b072075e968173a8b">More...</a><br /></td></tr>
-<tr class="separator:a580d79b630d31f3b072075e968173a8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a83d2f3344c9c4744e68a556b45d41f4b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a83d2f3344c9c4744e68a556b45d41f4b">siesta_equilibrium::siesta_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a83d2f3344c9c4744e68a556b45d41f4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacesiesta__equilibrium.html#a83d2f3344c9c4744e68a556b45d41f4b">More...</a><br /></td></tr>
-<tr class="separator:a83d2f3344c9c4744e68a556b45d41f4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0b30d0214b96e71293af9af5094de36"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">siesta_equilibrium::siesta_get_suv</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ac0b30d0214b96e71293af9af5094de36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets siesta s value at position.  <a href="namespacesiesta__equilibrium.html#ac0b30d0214b96e71293af9af5094de36">More...</a><br /></td></tr>
-<tr class="separator:ac0b30d0214b96e71293af9af5094de36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">siesta_equilibrium::siesta_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">More...</a><br /></td></tr>
-<tr class="separator:a5c60ae6d4eb59e160c920f2da2f605d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49">siesta_equilibrium::siesta_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespacesiesta__equilibrium.html#ac12ae30f9bfa1641d5e4d31e559c0b49">More...</a><br /></td></tr>
-<tr class="separator:ac12ae30f9bfa1641d5e4d31e559c0b49"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a5d5fbcaffe1d49ed291648ecc24d1259">siesta_equilibrium::siesta_get_int_b_plasma</a> (this, flux)</td></tr>
-<tr class="memdesc:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get internal plasma magnetic field.  <a href="namespacesiesta__equilibrium.html#a5d5fbcaffe1d49ed291648ecc24d1259">More...</a><br /></td></tr>
-<tr class="separator:a5d5fbcaffe1d49ed291648ecc24d1259"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388">siesta_equilibrium::siesta_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacesiesta__equilibrium.html#a8fa4714e6f1b1e8ce7aaf7feec54e388">More...</a><br /></td></tr>
-<tr class="separator:a8fa4714e6f1b1e8ce7aaf7feec54e388"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73fb404a24d6dd1755f6847dd98ce0be"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">siesta_equilibrium::siesta_is_1d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a73fb404a24d6dd1755f6847dd98ce0be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 1d array.  <a href="namespacesiesta__equilibrium.html#a73fb404a24d6dd1755f6847dd98ce0be">More...</a><br /></td></tr>
-<tr class="separator:a73fb404a24d6dd1755f6847dd98ce0be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a513834604de744b1779b4dc803efc630"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">siesta_equilibrium::siesta_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:a513834604de744b1779b4dc803efc630"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespacesiesta__equilibrium.html#a513834604de744b1779b4dc803efc630">More...</a><br /></td></tr>
-<tr class="separator:a513834604de744b1779b4dc803efc630"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aa002c0e73f884fb2a1a3a2e11854b4c2">siesta_equilibrium::siesta_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the siesta equilibrium.  <a href="namespacesiesta__equilibrium.html#aa002c0e73f884fb2a1a3a2e11854b4c2">More...</a><br /></td></tr>
-<tr class="separator:aa002c0e73f884fb2a1a3a2e11854b4c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a14a150afd6c526771bbde5237d53d72b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">siesta_equilibrium::siesta_save_state</a> (this)</td></tr>
-<tr class="memdesc:a14a150afd6c526771bbde5237d53d72b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespacesiesta__equilibrium.html#a14a150afd6c526771bbde5237d53d72b">More...</a><br /></td></tr>
-<tr class="separator:a14a150afd6c526771bbde5237d53d72b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0e5961578d443ce3e3e13ae34f41ae56"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">siesta_equilibrium::siesta_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a0e5961578d443ce3e3e13ae34f41ae56"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespacesiesta__equilibrium.html#a0e5961578d443ce3e3e13ae34f41ae56">More...</a><br /></td></tr>
-<tr class="separator:a0e5961578d443ce3e3e13ae34f41ae56"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aecadf78aa6839a8fa8e066b11cd3f547"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">siesta_equilibrium::siesta_write</a> (this, iou)</td></tr>
-<tr class="memdesc:aecadf78aa6839a8fa8e066b11cd3f547"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespacesiesta__equilibrium.html#aecadf78aa6839a8fa8e066b11cd3f547">More...</a><br /></td></tr>
-<tr class="separator:aecadf78aa6839a8fa8e066b11cd3f547"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0551767a732b51891984375ed98b08d3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">siesta_equilibrium::siesta_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a0551767a732b51891984375ed98b08d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the current valid input.  <a href="namespacesiesta__equilibrium.html#a0551767a732b51891984375ed98b08d3">More...</a><br /></td></tr>
-<tr class="separator:a0551767a732b51891984375ed98b08d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40383ec407420d91a3aed6c13c7bbe33"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">siesta_equilibrium::siesta_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a40383ec407420d91a3aed6c13c7bbe33"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the siesta state to children.  <a href="namespacesiesta__equilibrium.html#a40383ec407420d91a3aed6c13c7bbe33">More...</a><br /></td></tr>
-<tr class="separator:a40383ec407420d91a3aed6c13c7bbe33"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af28819457f5a29e912480ed6dd558e82"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">siesta_equilibrium::siesta_sync_child</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:af28819457f5a29e912480ed6dd558e82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize a child siesta state to the parent.  <a href="namespacesiesta__equilibrium.html#af28819457f5a29e912480ed6dd558e82">More...</a><br /></td></tr>
-<tr class="separator:af28819457f5a29e912480ed6dd558e82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c553c755a447272f1e5634e7b9cf477"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">siesta_equilibrium::siesta_to_vmec_s</a> (s)</td></tr>
-<tr class="memdesc:a3c553c755a447272f1e5634e7b9cf477"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map the siesta s to the vmec s.  <a href="namespacesiesta__equilibrium.html#a3c553c755a447272f1e5634e7b9cf477">More...</a><br /></td></tr>
-<tr class="separator:a3c553c755a447272f1e5634e7b9cf477"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">siesta_equilibrium::siesta_to_siesta_s</a> (s)</td></tr>
-<tr class="memdesc:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map the vmec s to the siesta s.  <a href="namespacesiesta__equilibrium.html#a4f94198ae29d9352b62dc5a9dd357b5a">More...</a><br /></td></tr>
-<tr class="separator:a4f94198ae29d9352b62dc5a9dd357b5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a47aea8cfcb70b39596d19b886868b2ab"><td class="memItemLeft" align="right" valign="top">pure real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__equilibrium.html#a47aea8cfcb70b39596d19b886868b2ab">siesta_equilibrium::siesta_to_i_vmec</a> (s)</td></tr>
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-<tr class="separator:ad77a5b26b47f1b280cb4bfed48acd990"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a4a50687337ce61a2a3abecf80ba92739"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add parallel flow damping terms to forces (for Hessian calculation) to suppress null space at resonances.  <a href="namespacesiesta__force.html#a4a50687337ce61a2a3abecf80ba92739">More...</a><br /></td></tr>
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-<a href="#namespaces">Modules</a> &#124;
-<a href="#func-members">Functions/Subroutines</a> &#124;
-<a href="#var-members">Variables</a>  </div>
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-<div class="title">siesta_namelist.f90 File Reference</div>  </div>
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-<p>Contains module <a class="el" href="namespacesiesta__namelist.html">siesta_namelist</a>.  
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-<table class="memberdecls">
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-<tr class="memitem:namespacesiesta__namelist"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html">siesta_namelist</a></td></tr>
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-<tr class="separator:a3b21b61be1715b54e98f9b9cef8dc068"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a3337260f4eaa82a64058d6972453c294"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes the namelist input file.  <a href="namespacesiesta__namelist.html#a3337260f4eaa82a64058d6972453c294">More...</a><br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a33133507bba1231bc8ceaaa642281d27">siesta_namelist::lrestart</a> = .FALSE.</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#a9ce10cbbca6fbb1464e1b980af9fd4bd">siesta_namelist::l_vmec_uniform</a></td></tr>
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-<tr class="memdesc:ac64d37e97cd94c6e9eb9643f6405983a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Recompute lambda on the SIESTA grid. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__namelist.html#afb27bbf272c0e9e170063a6f4727bf3d">siesta_namelist::niter</a> = 10</td></tr>
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-<tr class="memitem:adc41b9cb1681f385e9f1fe81126fcda4"><td class="memItemLeft" align="right" valign="top"><a id="adc41b9cb1681f385e9f1fe81126fcda4"></a>
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-<p>Contains a context to store the siesta quantities.  
-<a href="#details">More...</a></p>
-<div class="textblock"><code>#include &lt;string&gt;</code><br />
-<code>#include &lt;netcdf.h&gt;</code><br />
-<code>#include &quot;<a class="el" href="grid__quantity_8hpp_source.html">grid_quantity.hpp</a>&quot;</code><br />
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-<p><a href="siesta__quantities_8hpp_source.html">Go to the source code of this file.</a></p>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Siesta quantities.  <a href="classsiesta__quantities.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains a context to store the siesta quantities. </p>
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-<a href="siesta__quantities_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment"></span><span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
-<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#ifndef siesta_quantities_hpp</span></div>
-<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#define siesta_quantities_hpp</span></div>
-<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
-<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
-<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;netcdf.h&gt;</span></div>
-<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160; </div>
-<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="grid__quantity_8hpp.html">grid_quantity.hpp</a>&quot;</span></div>
-<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160; </div>
-<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00019"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html">   19</a></span>&#160;<span class="keyword">class </span><a class="code" href="classsiesta__quantities.html">siesta_quantities</a> {</div>
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-<div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">   22</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__grid.html">siesta_grid&lt;full_grid&gt;</a> <a class="code" href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">test_full</a>;</div>
-<div class="line"><a name="l00024"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">   24</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">r</a>;</div>
-<div class="line"><a name="l00026"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a85bd2f9b008e7848087cc3c2abe9b516">   26</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a85bd2f9b008e7848087cc3c2abe9b516">drds</a>;</div>
-<div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a556b5145f1ba0fbe902e5a81c2fd73ad">   28</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#a556b5145f1ba0fbe902e5a81c2fd73ad">z</a>;</div>
-<div class="line"><a name="l00030"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a884adc0a6de033e5cb0c85a06e92658c">   30</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#a884adc0a6de033e5cb0c85a06e92658c">dzds</a>;</div>
-<div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ac93a1d131e62a5ce960446dc730eddfc">   32</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__grid.html">siesta_grid&lt;full_grid&gt;</a> <a class="code" href="classsiesta__quantities.html#ac93a1d131e62a5ce960446dc730eddfc">phipf</a>;</div>
-<div class="line"><a name="l00034"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a6d46c1f2cc589a9a30cd2961396a9d16">   34</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__grid.html">siesta_grid&lt;full_grid&gt;</a> <a class="code" href="classsiesta__quantities.html#a6d46c1f2cc589a9a30cd2961396a9d16">chipf</a>;</div>
-<div class="line"><a name="l00036"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a72b431d872c372f0b29d1d19cf3068e3">   36</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#a72b431d872c372f0b29d1d19cf3068e3">jbsups</a>;</div>
-<div class="line"><a name="l00038"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a247d54db419403cab2d04e88a50ec82e">   38</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#a247d54db419403cab2d04e88a50ec82e">djbsupsds</a>;</div>
-<div class="line"><a name="l00040"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a8406f584abe51291c6c1e267b67f8a9e">   40</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a8406f584abe51291c6c1e267b67f8a9e">jbsupu</a>;</div>
-<div class="line"><a name="l00042"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ab349008782f9762d6a16bafa642be0a1">   42</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#ab349008782f9762d6a16bafa642be0a1">jbsupv</a>;</div>
-<div class="line"><a name="l00044"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ae0e2d19e8d57b34bceb17c4b8d2165e3">   44</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#ae0e2d19e8d57b34bceb17c4b8d2165e3">bsups</a>;</div>
-<div class="line"><a name="l00046"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a5fb4060d9f1fb5226c79d7cb003c4fc5">   46</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a5fb4060d9f1fb5226c79d7cb003c4fc5">bsupu</a>;</div>
-<div class="line"><a name="l00048"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a6eb0268b64b0b8612649093a610ec0d4">   48</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a6eb0268b64b0b8612649093a610ec0d4">bsupv</a>;</div>
-<div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#abab0a02a7435a0b074787dee97c08806">   50</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#abab0a02a7435a0b074787dee97c08806">bsubs</a>;</div>
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-<div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ad9ad42f1c28773bcab1a48773b5a2a1b">   54</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#ad9ad42f1c28773bcab1a48773b5a2a1b">bsubv</a>;</div>
-<div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ac6c8d5a38be2b61f8a952eb53f1c9c01">   56</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, sine&gt;</a> <a class="code" href="classsiesta__quantities.html#ac6c8d5a38be2b61f8a952eb53f1c9c01">jksups</a>;</div>
-<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a6a4e7a1d6587314bced1b55f7c97502e">   58</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#a6a4e7a1d6587314bced1b55f7c97502e">jksupu</a>;</div>
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-<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#afc38acc88e8722b07fd08c876c052627">   64</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classsiesta__quantities.html#afc38acc88e8722b07fd08c876c052627">p</a>;</div>
-<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160; </div>
-<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a38fbfd9b3872ff213cdf8ec6a430b180">   73</a></span>&#160;    <a class="code" href="classsiesta__quantities.html#a38fbfd9b3872ff213cdf8ec6a430b180">siesta_quantities</a>(<span class="keyword">const</span> std::string &amp;restart_file) :</div>
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-<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;        nc_get_var(ncid, varid, tor_modes.data());</div>
-<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160; </div>
-<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;        <span class="keywordtype">int</span> <a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>;</div>
-<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;nfp&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;        nc_get_var(ncid, varid, &amp;<a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>);</div>
-<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160; </div>
-<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;        <a class="code" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity&lt;GIRD_CLASS&gt;</a> quantity;</div>
-<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> m = 0, em = <a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>; m &lt;= em; m++) {</div>
-<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">long</span> n = -<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>, en = <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>; n &lt;= en; n++) {</div>
-<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">size_t</span> ni = n + <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>;</div>
-<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160; </div>
-<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;                std::vector&lt;double&gt; temp(nrad);</div>
-<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;                nc_inq_varid(ncid, name.c_str(), &amp;varid);</div>
-<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160; </div>
-<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;                <span class="keyword">const</span> std::array&lt;size_t, 3&gt; start = {0, ni, m};</div>
-<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;                <span class="keyword">const</span> std::array&lt;size_t, 3&gt; end = {<span class="keyword">static_cast&lt;</span><span class="keywordtype">size_t</span><span class="keyword">&gt;</span> (nrad), 1, 1};</div>
-<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;                nc_get_vara(ncid, varid,</div>
-<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;                            start.data(), end.data(),</div>
-<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;                            temp.data());</div>
-<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160; </div>
-<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;                <span class="keywordflow">if</span> (n == -<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>) {</div>
-<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;                    <a class="code" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d&lt;GIRD_CLASS&gt;</a> new_grid;</div>
-<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;                    new_grid.push_back(temp);</div>
-<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;                    quantity.push_back(new_grid);</div>
-<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;                } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;                    quantity[m].push_back(<a class="code" href="classsiesta__grid.html">siesta_grid&lt;GIRD_CLASS&gt;</a> (temp));</div>
-<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;                }</div>
-<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;            }</div>
-<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;        }</div>
-<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160; </div>
-<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;        nc_close(ncid);</div>
-<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160; </div>
-<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;GIRD_CLASS, PARITY&gt;</a> (quantity, <a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>, <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>,</div>
-<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;                                                   tor_modes, <a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>);</div>
-<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;    }</div>
-<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160; </div>
-<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;    <span class="keyword">template</span>&lt;<span class="keyword">class</span> GIRD_CLASS, <span class="keyword">class</span> PARITY&gt;</div>
-<div class="line"><a name="l00248"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">  248</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;GIRD_CLASS, PARITY&gt;</a> <a class="code" href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">load_fourier_denorm</a>(<span class="keyword">const</span> std::string &amp;restart_file,</div>
-<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;                                                                  <span class="keyword">const</span> std::string &amp;name) {</div>
-<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;        <span class="keywordtype">int</span> ncid;</div>
-<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;        <span class="keywordtype">int</span> status = nc_open(restart_file.c_str(), NC_NOWRITE, &amp;ncid);</div>
-<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;        <span class="keywordflow">if</span> (status) {</div>
-<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;Failed to open &quot;</span> &lt;&lt; restart_file &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;            exit(status);</div>
-<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        }</div>
-<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160; </div>
-<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        <span class="keywordtype">int</span> varid;</div>
-<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;        <span class="keywordtype">int</span> nrad;</div>
-<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;nrad&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;        nc_get_var(ncid, varid, &amp;nrad);</div>
-<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160; </div>
-<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        <span class="keywordtype">int</span> <a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>;</div>
-<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;mpol&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;        nc_get_var(ncid, varid, &amp;<a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>);</div>
-<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160; </div>
-<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;        <span class="keywordtype">int</span> <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>;</div>
-<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;ntor&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;        nc_get_var(ncid, varid, &amp;<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>);</div>
-<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160; </div>
-<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;tor_modes&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        std::vector&lt;int&gt; tor_modes(2*<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a> + 1);</div>
-<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;        nc_get_var(ncid, varid, tor_modes.data());</div>
-<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160; </div>
-<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;        <span class="keywordtype">int</span> <a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>;</div>
-<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;nfp&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;        nc_get_var(ncid, varid, &amp;<a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>);</div>
-<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160; </div>
-<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;        <span class="keywordtype">double</span> bfactor;</div>
-<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;        nc_inq_varid(ncid, <span class="stringliteral">&quot;b_factor&quot;</span>, &amp;varid);</div>
-<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;        nc_get_var(ncid, varid, &amp;bfactor);</div>
-<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160; </div>
-<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        <a class="code" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity&lt;GIRD_CLASS&gt;</a> quantity;</div>
-<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> m = 0, em = <a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>; m &lt;= em; m++) {</div>
-<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">long</span> n = -<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>, en = <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>; n &lt;= en; n++) {</div>
-<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">size_t</span> ni = n + <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>;</div>
-<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160; </div>
-<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;                std::vector&lt;double&gt; temp(nrad);</div>
-<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;                nc_inq_varid(ncid, name.c_str(), &amp;varid);</div>
-<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160; </div>
-<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;                <span class="keyword">const</span> std::array&lt;size_t, 3&gt; start = {0, ni, m};</div>
-<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;                <span class="keyword">const</span> std::array&lt;size_t, 3&gt; end = {<span class="keyword">static_cast&lt;</span><span class="keywordtype">size_t</span><span class="keyword">&gt;</span> (nrad), 1, 1};</div>
-<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;                nc_get_vara(ncid, varid,</div>
-<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;                            start.data(), end.data(),</div>
-<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;                            temp.data());</div>
-<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160; </div>
-<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; nrad; i++) {</div>
-<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;                    <span class="keywordflow">if</span> (m == 0 &amp;&amp; n == 0) {</div>
-<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;                        temp[i] = temp[i]/bfactor;</div>
-<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;                    } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;                        temp[i] = sqrt(2.0)*temp[i]/bfactor;</div>
-<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;                    }</div>
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-<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160; </div>
-<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;                <span class="keywordflow">if</span> (n == -<a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>) {</div>
-<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;                    <a class="code" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d&lt;GIRD_CLASS&gt;</a> new_grid;</div>
-<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;                    new_grid.push_back(temp);</div>
-<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;                    quantity.push_back(new_grid);</div>
-<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;                } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;                    quantity[m].push_back(<a class="code" href="classsiesta__grid.html">siesta_grid&lt;GIRD_CLASS&gt;</a> (temp));</div>
-<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;                }</div>
-<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;            }</div>
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-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160; </div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        nc_close(ncid);</div>
-<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160; </div>
-<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;GIRD_CLASS, PARITY&gt;</a> (quantity, <a class="code" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">mpol</a>, <a class="code" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">ntor</a>,</div>
-<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;                                                   tor_modes, <a class="code" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">nfp</a>);</div>
-<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;    }</div>
-<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160; </div>
-<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;    <span class="keyword">template</span>&lt;<span class="keyword">class</span> PARITY&gt;</div>
-<div class="line"><a name="l00327"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a6b36ce3d5f1bdff79ff1a7f3cd0069af">  327</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, PARITY&gt;</a> <a class="code" href="classsiesta__quantities.html#a6b36ce3d5f1bdff79ff1a7f3cd0069af">to_prime</a>(<span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, PARITY&gt;</a> <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>) {</div>
-<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;        <a class="code" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity&lt;half_grid&gt;</a> half_quanity;</div>
-<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160; </div>
-<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;        <span class="keywordflow">for</span> (<span class="keyword">const</span> <a class="code" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d&lt;full_grid&gt;</a> slice : <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.quantity) {</div>
-<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;            <a class="code" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d&lt;half_grid&gt;</a> half_slice;</div>
-<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160; </div>
-<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;            <span class="keywordflow">for</span> (<span class="keyword">const</span> <a class="code" href="classsiesta__grid.html">siesta_grid&lt;full_grid&gt;</a> &amp;q : slice) {</div>
-<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;                half_slice.push_back(<a class="code" href="classsiesta__grid.html">siesta_grid&lt;half_grid&gt;</a> (q.grid.get_prime()));</div>
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-<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;                                                  <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.ntor,</div>
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-<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;                                                  <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.nfp);</div>
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-<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00354"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">  354</a></span>&#160;    <span class="keyword">static</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;full_grid, PARITY&gt;</a> <a class="code" href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">to_prime</a>(<span class="keyword">const</span> <a class="code" href="classsiesta__fourier.html">siesta_fourier&lt;half_grid, PARITY&gt;</a> <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>) {</div>
-<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;        <a class="code" href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity&lt;full_grid&gt;</a> full_quanity;</div>
-<div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160; </div>
-<div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> m = 0, em = <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.mpol; m &lt;= em; m++) {</div>
-<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;            <a class="code" href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d&lt;full_grid&gt;</a> full_slice;</div>
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-<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;                <span class="keyword">const</span> <span class="keywordtype">size_t</span> ni = n + <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.ntor;</div>
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-<div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160; </div>
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-<div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;                                                  <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.ntor,</div>
-<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;                                                  <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.tor_modes,</div>
-<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;                                                  <a class="code" href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a>.nfp);</div>
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-<div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">r</a>.<a class="code" href="classsiesta__fourier.html#a56fce8779f974e68f57b5b19476484c5">get</a>(s, u, v);</div>
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-<div class="line"><a name="l00394"></a><span class="lineno">  394</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00395"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">  395</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">get_r_prime</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00406"></a><span class="lineno">  406</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00407"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a482cd5fdfb0203f8ef8f24e47242ca2d">  407</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__quantities.html#a482cd5fdfb0203f8ef8f24e47242ca2d">get_dr_du</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00419"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a53a72705ab9d93719c560df5d9977994">  419</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__quantities.html#a53a72705ab9d93719c560df5d9977994">get_dr_dv</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
-<div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">r</a>.<a class="code" href="classsiesta__fourier.html#a6832e09cc3673072b02ef2413689cfc8">get_dv</a>(s, u, v);</div>
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-<div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00431"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">  431</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">get_z</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00442"></a><span class="lineno">  442</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00510"></a><span class="lineno">  510</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00559"></a><span class="lineno"><a class="line" href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">  559</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">get_bsubv</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00594"></a><span class="lineno">  594</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00606"></a><span class="lineno">  606</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00676"></a><span class="lineno">  676</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00680"></a><span class="lineno">  680</span>&#160; </div>
-<div class="line"><a name="l00681"></a><span class="lineno">  681</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00692"></a><span class="lineno">  692</span>&#160; </div>
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-<div class="ttc" id="aclasscosine_html"><div class="ttname"><a href="classcosine.html">cosine</a></div><div class="ttdoc">Cosine Parity function interface.</div><div class="ttdef"><b>Definition:</b> parity.hpp:62</div></div>
-<div class="ttc" id="aclassfull__grid_html"><div class="ttname"><a href="classfull__grid.html">full_grid</a></div><div class="ttdoc">A full grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:49</div></div>
-<div class="ttc" id="aclasshalf__grid_html"><div class="ttname"><a href="classhalf__grid.html">half_grid</a></div><div class="ttdoc">A half grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:80</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html"><div class="ttname"><a href="classsiesta__fourier.html">siesta_fourier&lt; full_grid, cosine &gt;</a></div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a56fce8779f974e68f57b5b19476484c5"><div class="ttname"><a href="classsiesta__fourier.html#a56fce8779f974e68f57b5b19476484c5">siesta_fourier::get</a></div><div class="ttdeci">double get(const double s, const double u, const double v) const</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:329</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a5751b6fabd640aef95768fbedd79f4fa"><div class="ttname"><a href="classsiesta__fourier.html#a5751b6fabd640aef95768fbedd79f4fa">siesta_fourier::get_du</a></div><div class="ttdeci">double get_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get a poloidal derivative at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:354</div></div>
-<div class="ttc" id="aclasssiesta__fourier_html_a6832e09cc3673072b02ef2413689cfc8"><div class="ttname"><a href="classsiesta__fourier.html#a6832e09cc3673072b02ef2413689cfc8">siesta_fourier::get_dv</a></div><div class="ttdeci">double get_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get a toroidal derivative at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:379</div></div>
-<div class="ttc" id="aclasssiesta__grid_html"><div class="ttname"><a href="classsiesta__grid.html">siesta_grid&lt; full_grid &gt;</a></div></div>
-<div class="ttc" id="aclasssiesta__grid_html_abf2853edf8e6e7217d09c31b331495df"><div class="ttname"><a href="classsiesta__grid.html#abf2853edf8e6e7217d09c31b331495df">siesta_grid::get</a></div><div class="ttdeci">double get(const double s) const</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:175</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html"><div class="ttname"><a href="classsiesta__quantities.html">siesta_quantities</a></div><div class="ttdoc">Siesta quantities.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:19</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a0e66173f52bd4dc5ed0d9141bdc3a9ae"><div class="ttname"><a href="classsiesta__quantities.html#a0e66173f52bd4dc5ed0d9141bdc3a9ae">siesta_quantities::get_z</a></div><div class="ttdeci">double get_z(const double s, const double u, const double v) const</div><div class="ttdoc">Get Z quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:431</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a12fa6cbc53cae3ca1a53d715e81b37ea"><div class="ttname"><a href="classsiesta__quantities.html#a12fa6cbc53cae3ca1a53d715e81b37ea">siesta_quantities::get_jacobian</a></div><div class="ttdeci">double get_jacobian(const double s, const double u, const double v) const</div><div class="ttdoc">Get jacobian.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:643</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a1e9b2b38d1edfff00a1d3f9e2dfbbfef"><div class="ttname"><a href="classsiesta__quantities.html#a1e9b2b38d1edfff00a1d3f9e2dfbbfef">siesta_quantities::get_r_prime</a></div><div class="ttdeci">double get_r_prime(const double s, const double u, const double v) const</div><div class="ttdoc">Get R' quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:395</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a247d54db419403cab2d04e88a50ec82e"><div class="ttname"><a href="classsiesta__quantities.html#a247d54db419403cab2d04e88a50ec82e">siesta_quantities::djbsupsds</a></div><div class="ttdeci">const siesta_fourier&lt; full_grid, sine &gt; djbsupsds</div><div class="ttdoc">dJB^sds</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:38</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a26d37b454e3d1757149dcc5fb593430e"><div class="ttname"><a href="classsiesta__quantities.html#a26d37b454e3d1757149dcc5fb593430e">siesta_quantities::get_bsups</a></div><div class="ttdeci">double get_bsups(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsups quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:499</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a292ea304c80d08766dfc3ac0852861da"><div class="ttname"><a href="classsiesta__quantities.html#a292ea304c80d08766dfc3ac0852861da">siesta_quantities::make_full</a></div><div class="ttdeci">static siesta_grid&lt; full_grid &gt; make_full()</div><div class="ttdoc">Factory method to make a test quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:102</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a2d7eea2d822d40c9d2e826048fcfda09"><div class="ttname"><a href="classsiesta__quantities.html#a2d7eea2d822d40c9d2e826048fcfda09">siesta_quantities::get_jksupv</a></div><div class="ttdeci">double get_jksupv(const double s, const double u, const double v) const</div><div class="ttdoc">Get jksupv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:595</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a2db2fae2b55c13698b036e0fe07d1e1d"><div class="ttname"><a href="classsiesta__quantities.html#a2db2fae2b55c13698b036e0fe07d1e1d">siesta_quantities::jksupv</a></div><div class="ttdeci">const siesta_fourier&lt; full_grid, cosine &gt; jksupv</div><div class="ttdoc">JK^v.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:60</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a379b44376a45be5641b81ae2eb7e119d"><div class="ttname"><a href="classsiesta__quantities.html#a379b44376a45be5641b81ae2eb7e119d">siesta_quantities::r</a></div><div class="ttdeci">const siesta_fourier&lt; full_grid, cosine &gt; r</div><div class="ttdoc">r</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:24</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a3839869c05da0ecf22125d26a29fc866"><div class="ttname"><a href="classsiesta__quantities.html#a3839869c05da0ecf22125d26a29fc866">siesta_quantities::get_jksups</a></div><div class="ttdeci">double get_jksups(const double s, const double u, const double v) const</div><div class="ttdoc">Get jksups quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:571</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a38fbfd9b3872ff213cdf8ec6a430b180"><div class="ttname"><a href="classsiesta__quantities.html#a38fbfd9b3872ff213cdf8ec6a430b180">siesta_quantities::siesta_quantities</a></div><div class="ttdeci">siesta_quantities(const std::string &amp;restart_file)</div><div class="ttdoc">Siesta quantities.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:73</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a482cd5fdfb0203f8ef8f24e47242ca2d"><div class="ttname"><a href="classsiesta__quantities.html#a482cd5fdfb0203f8ef8f24e47242ca2d">siesta_quantities::get_dr_du</a></div><div class="ttdeci">double get_dr_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get dRdu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:407</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a53a72705ab9d93719c560df5d9977994"><div class="ttname"><a href="classsiesta__quantities.html#a53a72705ab9d93719c560df5d9977994">siesta_quantities::get_dr_dv</a></div><div class="ttdeci">double get_dr_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get dRdv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:419</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a556b5145f1ba0fbe902e5a81c2fd73ad"><div class="ttname"><a href="classsiesta__quantities.html#a556b5145f1ba0fbe902e5a81c2fd73ad">siesta_quantities::z</a></div><div class="ttdeci">const siesta_fourier&lt; full_grid, sine &gt; z</div><div class="ttdoc">z</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:28</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a57c5b1a8292a333573eb22542299647a"><div class="ttname"><a href="classsiesta__quantities.html#a57c5b1a8292a333573eb22542299647a">siesta_quantities::load_scalar</a></div><div class="ttdeci">static double load_scalar(const std::string &amp;restart_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a scalar siesta quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:153</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a5fb4060d9f1fb5226c79d7cb003c4fc5"><div class="ttname"><a href="classsiesta__quantities.html#a5fb4060d9f1fb5226c79d7cb003c4fc5">siesta_quantities::bsupu</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; bsupu</div><div class="ttdoc">JB^u.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:46</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a60b43e6e1883166b50382a819efae6ca"><div class="ttname"><a href="classsiesta__quantities.html#a60b43e6e1883166b50382a819efae6ca">siesta_quantities::get_djbsups_ds</a></div><div class="ttdeci">double get_djbsups_ds(const double s, const double u, const double v) const</div><div class="ttdoc">Get djbsupsds quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:665</div></div>
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-<div class="ttc" id="aclasssiesta__quantities_html_a75d7bef24419fa90067c88fc47be1562"><div class="ttname"><a href="classsiesta__quantities.html#a75d7bef24419fa90067c88fc47be1562">siesta_quantities::get_chipf</a></div><div class="ttdeci">double get_chipf(const double s) const</div><div class="ttdoc">Get chipf quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:487</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a776d9546f9f8e164506ba47bf41a9f7a"><div class="ttname"><a href="classsiesta__quantities.html#a776d9546f9f8e164506ba47bf41a9f7a">siesta_quantities::bsubu</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; bsubu</div><div class="ttdoc">B_u.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:52</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a803c04dd5a597f8640e2c43e07afc10a"><div class="ttname"><a href="classsiesta__quantities.html#a803c04dd5a597f8640e2c43e07afc10a">siesta_quantities::get_divb</a></div><div class="ttdeci">double get_divb(const double s, const double u, const double v) const</div><div class="ttdoc">Get divergence of B.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:701</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a81d304fadf75b7010c4419bdd4530394"><div class="ttname"><a href="classsiesta__quantities.html#a81d304fadf75b7010c4419bdd4530394">siesta_quantities::get_z_prime</a></div><div class="ttdeci">double get_z_prime(const double s, const double u, const double v) const</div><div class="ttdoc">Get Z' quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:443</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a8406f584abe51291c6c1e267b67f8a9e"><div class="ttname"><a href="classsiesta__quantities.html#a8406f584abe51291c6c1e267b67f8a9e">siesta_quantities::jbsupu</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; jbsupu</div><div class="ttdoc">JB^u.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:40</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a85bd2f9b008e7848087cc3c2abe9b516"><div class="ttname"><a href="classsiesta__quantities.html#a85bd2f9b008e7848087cc3c2abe9b516">siesta_quantities::drds</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; drds</div><div class="ttdoc">drds</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:26</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a884adc0a6de033e5cb0c85a06e92658c"><div class="ttname"><a href="classsiesta__quantities.html#a884adc0a6de033e5cb0c85a06e92658c">siesta_quantities::dzds</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, sine &gt; dzds</div><div class="ttdoc">dzds</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:30</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a8a3e9e3450432f9061ff1fb47a51efc8"><div class="ttname"><a href="classsiesta__quantities.html#a8a3e9e3450432f9061ff1fb47a51efc8">siesta_quantities::get_r</a></div><div class="ttdeci">double get_r(const double s, const double u, const double v) const</div><div class="ttdoc">Get R quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:383</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a8a41e9027bcb2e6b7873d449f167b8f3"><div class="ttname"><a href="classsiesta__quantities.html#a8a41e9027bcb2e6b7873d449f167b8f3">siesta_quantities::get_jksupu</a></div><div class="ttdeci">double get_jksupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get jksupu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:583</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a8d2f65174417a3ed72fe23f23bfc12c2"><div class="ttname"><a href="classsiesta__quantities.html#a8d2f65174417a3ed72fe23f23bfc12c2">siesta_quantities::load_fourier</a></div><div class="ttdeci">static siesta_fourier&lt; GIRD_CLASS, PARITY &gt; load_fourier(const std::string &amp;restart_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a fourier siesta quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:180</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_a9f6ed9113b40f01e2f54e7f1bd2b68ff"><div class="ttname"><a href="classsiesta__quantities.html#a9f6ed9113b40f01e2f54e7f1bd2b68ff">siesta_quantities::get_djbsupv_dv</a></div><div class="ttdeci">double get_djbsupv_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get djbsupvdv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:689</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_aa194548bec488ea0b5e1a53b2caac47c"><div class="ttname"><a href="classsiesta__quantities.html#aa194548bec488ea0b5e1a53b2caac47c">siesta_quantities::get_bsubv</a></div><div class="ttdeci">double get_bsubv(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:559</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ab1fbd9a44f1bf55b859085d2ccf6a77d"><div class="ttname"><a href="classsiesta__quantities.html#ab1fbd9a44f1bf55b859085d2ccf6a77d">siesta_quantities::get_pressure</a></div><div class="ttdeci">double get_pressure(const double s, const double u, const double v) const</div><div class="ttdoc">Get pressure.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:713</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ab349008782f9762d6a16bafa642be0a1"><div class="ttname"><a href="classsiesta__quantities.html#ab349008782f9762d6a16bafa642be0a1">siesta_quantities::jbsupv</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; jbsupv</div><div class="ttdoc">JB^v.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:42</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ab7b8b1c7e8af9d13ea6ff8216c6fac47"><div class="ttname"><a href="classsiesta__quantities.html#ab7b8b1c7e8af9d13ea6ff8216c6fac47">siesta_quantities::to_prime</a></div><div class="ttdeci">static siesta_fourier&lt; full_grid, PARITY &gt; to_prime(const siesta_fourier&lt; half_grid, PARITY &gt; siesta)</div><div class="ttdoc">Convert full grid quantity to half grid primed.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:354</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_abab0a02a7435a0b074787dee97c08806"><div class="ttname"><a href="classsiesta__quantities.html#abab0a02a7435a0b074787dee97c08806">siesta_quantities::bsubs</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, sine &gt; bsubs</div><div class="ttdoc">B_s.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:50</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_abeb99e354de5810056b408bdc3875361"><div class="ttname"><a href="classsiesta__quantities.html#abeb99e354de5810056b408bdc3875361">siesta_quantities::get_bsubs</a></div><div class="ttdeci">double get_bsubs(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubs quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:535</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ac6c8d5a38be2b61f8a952eb53f1c9c01"><div class="ttname"><a href="classsiesta__quantities.html#ac6c8d5a38be2b61f8a952eb53f1c9c01">siesta_quantities::jksups</a></div><div class="ttdeci">const siesta_fourier&lt; full_grid, sine &gt; jksups</div><div class="ttdoc">JK^s.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:56</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ac93a1d131e62a5ce960446dc730eddfc"><div class="ttname"><a href="classsiesta__quantities.html#ac93a1d131e62a5ce960446dc730eddfc">siesta_quantities::phipf</a></div><div class="ttdeci">const siesta_grid&lt; full_grid &gt; phipf</div><div class="ttdoc">Radial derivative of toroidal flux.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:32</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ac9c5a36d456734a82eb3117d8bff7b97"><div class="ttname"><a href="classsiesta__quantities.html#ac9c5a36d456734a82eb3117d8bff7b97">siesta_quantities::get_bsupv</a></div><div class="ttdeci">double get_bsupv(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsupv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:523</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ad279a13b1c34c7dd6f5f8be8259ff103"><div class="ttname"><a href="classsiesta__quantities.html#ad279a13b1c34c7dd6f5f8be8259ff103">siesta_quantities::get_bsupu</a></div><div class="ttdeci">double get_bsupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsupu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:511</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ad9ad42f1c28773bcab1a48773b5a2a1b"><div class="ttname"><a href="classsiesta__quantities.html#ad9ad42f1c28773bcab1a48773b5a2a1b">siesta_quantities::bsubv</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; bsubv</div><div class="ttdoc">B_v.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:54</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_adc6157d34f8ed498ac7e76e5f05ab122"><div class="ttname"><a href="classsiesta__quantities.html#adc6157d34f8ed498ac7e76e5f05ab122">siesta_quantities::get_phipf</a></div><div class="ttdeci">double get_phipf(const double s) const</div><div class="ttdoc">Get phipf quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:477</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_adf92d0015ead4b3a2b2af5e33b7359e2"><div class="ttname"><a href="classsiesta__quantities.html#adf92d0015ead4b3a2b2af5e33b7359e2">siesta_quantities::get_test</a></div><div class="ttdeci">double get_test(const double s) const</div><div class="ttdoc">Get test quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:723</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ae0e2d19e8d57b34bceb17c4b8d2165e3"><div class="ttname"><a href="classsiesta__quantities.html#ae0e2d19e8d57b34bceb17c4b8d2165e3">siesta_quantities::bsups</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, sine &gt; bsups</div><div class="ttdoc">JB^s.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:44</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ae0e376d0ae7883344e0d53ad7fc393ff"><div class="ttname"><a href="classsiesta__quantities.html#ae0e376d0ae7883344e0d53ad7fc393ff">siesta_quantities::get_jbsupu</a></div><div class="ttdeci">double get_jbsupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get jbsupu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:619</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_ae417bbe4b74e6fb0596857d17ccca440"><div class="ttname"><a href="classsiesta__quantities.html#ae417bbe4b74e6fb0596857d17ccca440">siesta_quantities::load</a></div><div class="ttdeci">static siesta_grid&lt; GIRD_CLASS &gt; load(const std::string &amp;restart_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a siesta quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:123</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_aea287b3f155627f9122915aa09264727"><div class="ttname"><a href="classsiesta__quantities.html#aea287b3f155627f9122915aa09264727">siesta_quantities::get_dz_dv</a></div><div class="ttdeci">double get_dz_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get dZdv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:467</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_aebf2929d68e776a50c2887cdc46355cf"><div class="ttname"><a href="classsiesta__quantities.html#aebf2929d68e776a50c2887cdc46355cf">siesta_quantities::get_djbsupu_du</a></div><div class="ttdeci">double get_djbsupu_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get djbsupudu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:677</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_aeef3716a6b06587f469d8bcda4a5402a"><div class="ttname"><a href="classsiesta__quantities.html#aeef3716a6b06587f469d8bcda4a5402a">siesta_quantities::curtor</a></div><div class="ttdeci">const double curtor</div><div class="ttdoc">Total toroidal current.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:62</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_af170653edec6c27fffa8ea045bc5b801"><div class="ttname"><a href="classsiesta__quantities.html#af170653edec6c27fffa8ea045bc5b801">siesta_quantities::get_curtor</a></div><div class="ttdeci">double get_curtor() const</div><div class="ttdoc">Get total toroidal current.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:653</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_af20735e0ec4d611ca6f29d01557f8dd8"><div class="ttname"><a href="classsiesta__quantities.html#af20735e0ec4d611ca6f29d01557f8dd8">siesta_quantities::get_dz_du</a></div><div class="ttdeci">double get_dz_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get dZdu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:455</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_af8d6e03ad168a7ce35b4e5f788142b2a"><div class="ttname"><a href="classsiesta__quantities.html#af8d6e03ad168a7ce35b4e5f788142b2a">siesta_quantities::get_bsubu</a></div><div class="ttdeci">double get_bsubu(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubu quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:547</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_af9c5873c9e6ea3d4918745f21a08a6c3"><div class="ttname"><a href="classsiesta__quantities.html#af9c5873c9e6ea3d4918745f21a08a6c3">siesta_quantities::load_fourier_denorm</a></div><div class="ttdeci">static siesta_fourier&lt; GIRD_CLASS, PARITY &gt; load_fourier_denorm(const std::string &amp;restart_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a fourier denormalized siesta quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:248</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_afbb57375dccb0b630b5ff5c6d8317f10"><div class="ttname"><a href="classsiesta__quantities.html#afbb57375dccb0b630b5ff5c6d8317f10">siesta_quantities::test_full</a></div><div class="ttdeci">const siesta_grid&lt; full_grid &gt; test_full</div><div class="ttdoc">test function</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:22</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_afc38acc88e8722b07fd08c876c052627"><div class="ttname"><a href="classsiesta__quantities.html#afc38acc88e8722b07fd08c876c052627">siesta_quantities::p</a></div><div class="ttdeci">const siesta_fourier&lt; half_grid, cosine &gt; p</div><div class="ttdoc">Pressure.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:64</div></div>
-<div class="ttc" id="aclasssiesta__quantities_html_afd0d098b42ceb3b143ff7fba7b6def7b"><div class="ttname"><a href="classsiesta__quantities.html#afd0d098b42ceb3b143ff7fba7b6def7b">siesta_quantities::get_jbsupv</a></div><div class="ttdeci">double get_jbsupv(const double s, const double u, const double v) const</div><div class="ttdoc">Get jbsupv quantity.</div><div class="ttdef"><b>Definition:</b> siesta_quantities.hpp:631</div></div>
-<div class="ttc" id="aclasssine_html"><div class="ttname"><a href="classsine.html">sine</a></div><div class="ttdoc">Sine Parity function interface.</div><div class="ttdef"><b>Definition:</b> parity.hpp:36</div></div>
-<div class="ttc" id="agrid__quantity_8hpp_html"><div class="ttname"><a href="grid__quantity_8hpp.html">grid_quantity.hpp</a></div><div class="ttdoc">Contains classes to interpolate full and half grid quanities.</div></div>
-<div class="ttc" id="agrid__quantity_8hpp_html_a6f57755e702c1b65b151b4bf155c4d87"><div class="ttname"><a href="grid__quantity_8hpp.html#a6f57755e702c1b65b151b4bf155c4d87">siesta_quantity_1d</a></div><div class="ttdeci">std::vector&lt; siesta_grid&lt; GRID_CLASS &gt; &gt; siesta_quantity_1d</div><div class="ttdoc">Type for siesta fourier quantities for a single dimension.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:279</div></div>
-<div class="ttc" id="agrid__quantity_8hpp_html_ac60ced47d44d94ae603f98afabdde266"><div class="ttname"><a href="grid__quantity_8hpp.html#ac60ced47d44d94ae603f98afabdde266">siesta_quantity</a></div><div class="ttdeci">std::vector&lt; siesta_quantity_1d&lt; GRID_CLASS &gt; &gt; siesta_quantity</div><div class="ttdoc">Type for siesta fourier quantities.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:283</div></div>
-<div class="ttc" id="anamespacevmec__input_html_ab0cc4e8af292085788e013dffad82886"><div class="ttname"><a href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">vmec_input::nfp</a></div><div class="ttdeci">integer nfp</div><div class="ttdoc">Number of field periods.</div><div class="ttdef"><b>Definition:</b> vmec_input.f:350</div></div>
-<div class="ttc" id="anamespacevmec__input_html_ac6f2567548169008268f14d0bc8ca4b8"><div class="ttname"><a href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">vmec_input::ntor</a></div><div class="ttdeci">integer ntor</div><div class="ttdoc">Largest value of the toroidal modes.</div><div class="ttdef"><b>Definition:</b> vmec_input.f:348</div></div>
-<div class="ttc" id="anamespacevmec__input_html_ad23b27aa1648d81036ade421ef1a0944"><div class="ttname"><a href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">vmec_input::mpol</a></div><div class="ttdeci">integer mpol</div><div class="ttdoc">Total number of poloidal modes.</div><div class="ttdef"><b>Definition:</b> vmec_input.f:346</div></div>
-<div class="ttc" id="asiesta_8f90_html_aa38a6f5e7ea941bfabcb10353f795484"><div class="ttname"><a href="siesta_8f90.html#aa38a6f5e7ea941bfabcb10353f795484">siesta</a></div><div class="ttdeci">program siesta</div><div class="ttdoc">SIESTA is an ideal MHD equilibrium code that allows for islands and stocastic fields....</div><div class="ttdef"><b>Definition:</b> siesta.f90:32</div></div>
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-<p>Contains module <a class="el" href="namespacesiesta__run.html">siesta_run</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a39f2be7bdf0394de83c9d366dbd3edac"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a34192c15f6cda422bdf260056fee9ddb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the SIESTA equilibrium.  <a href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">More...</a><br /></td></tr>
-<tr class="separator:a34192c15f6cda422bdf260056fee9ddb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7d064142ea9b752edc46db8bf587326"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">siesta_run::siesta_run_sync</a> (this)</td></tr>
-<tr class="memdesc:aa7d064142ea9b752edc46db8bf587326"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync child equilibria.  <a href="namespacesiesta__run.html#aa7d064142ea9b752edc46db8bf587326">More...</a><br /></td></tr>
-<tr class="separator:aa7d064142ea9b752edc46db8bf587326"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
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-Variables</h2></td></tr>
-<tr class="memitem:aa2d2bc4e99ec0e6793849e2bcbb30d4b"><td class="memItemLeft" align="right" valign="top"><a id="aa2d2bc4e99ec0e6793849e2bcbb30d4b"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa2d2bc4e99ec0e6793849e2bcbb30d4b">siesta_run::siesta_run_control_clear</a> = 0</td></tr>
-<tr class="memdesc:aa2d2bc4e99ec0e6793849e2bcbb30d4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clear all control bits. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#a3edbdc3a80b2a5c1e24606fc25eab448">siesta_run::siesta_run_control_mpi</a> = 1</td></tr>
-<tr class="memdesc:a3edbdc3a80b2a5c1e24606fc25eab448"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to initalize mpi. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aa3050a3f5a2791a245c899b101605239">siesta_run::siesta_run_control_wout</a> = 2</td></tr>
-<tr class="memdesc:aa3050a3f5a2791a245c899b101605239"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to close the wout file. <br /></td></tr>
-<tr class="separator:aa3050a3f5a2791a245c899b101605239"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed7a512f2da2451105ece9eb19f43c7e"><td class="memItemLeft" align="right" valign="top"><a id="aed7a512f2da2451105ece9eb19f43c7e"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesiesta__run.html#aed7a512f2da2451105ece9eb19f43c7e">siesta_run::siesta_run_sync_namelist</a> = 3</td></tr>
-<tr class="memdesc:aed7a512f2da2451105ece9eb19f43c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bit position to sycn the namelist inputs. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacesiesta__run.html">siesta_run</a>. </p>
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-<div class="title">SIESTA Equilibrium Manual </div>  </div>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#siesta_equilibrium_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#siesta_equilibrium_recon_param_sec">SIESTA Reconstruction Parameters</a><ul><li class="level2"><a href="#siesta_equilibrium_vmec_recon_param_sec">SIESTA Equilibrium Reconstruction Parameters</a></li>
-<li class="level2"><a href="#siesta_equilibrium_aux_recon_param_sec">SIESTA Auxiliary Reconstruction Parameters</a></li>
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-</li>
-</ul>
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-<div class="textblock"><h1><a class="anchor" id="siesta_equilibrium_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the V3FIT interface to the SIESTA equilibrium solver. This lists all the parameters associated with a SIESTA equilibrium. These parameters are divided input two types, reconstruction parameters and derived parameters. All parameters are documented in a table of the following form. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<h1><a class="anchor" id="siesta_equilibrium_recon_param_sec"></a>
-SIESTA Reconstruction Parameters</h1>
-<p>Reconstruction parameters are divided into two types, SIESTA reconstruction parameters and auxillary parameters. </p>
-<h2><a class="anchor" id="siesta_equilibrium_vmec_recon_param_sec"></a>
-SIESTA Equilibrium Reconstruction Parameters</h2>
-<p>SIESTA Equilibrium reconstruction parameters are parameters that maybe reconstructed that change the equilibirum. These parameters require the equilibrium to reconverge. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>helpert</code></td><td width="50%">1D Array of helical perturbation amplitudes.</td><td width="30%">@ref siesta_context::helpert </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_equilibrium_aux_recon_param_sec"></a>
-SIESTA Auxiliary Reconstruction Parameters</h2>
-<p>SIESTA Auxiliary reconstruction parameters are parameters that maybe reconstructed that do not change the equilibirum. These parameters do not require the equilibrium to reconverge. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>pp_ne_b</code></td><td width="50%">1D Array of function density profile parameters.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_as</code></td><td width="50%">1D Array of segment density profile s poitions.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_af</code></td><td width="50%">1D Array of segment density profile f values.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b</code></td><td width="50%">1D Array of function sxrem profile parameters. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_as</code></td><td width="50%">1D Array of segment sxrem profile s poitions. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_af</code></td><td width="50%">1D Array of segment sxrem profile f values. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b_a</code></td><td width="50%">2D Array of function sxrem profile parameters. First index is the profile number.</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34" title="pprofile_T describing a flux surface conatsnt soft x-ray emissivity profile.">siesta_equilibrium::siesta_class::sxrem</a> </td></tr>
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-<td width="20%"><code>pp_te_as</code></td><td width="50%">1D Array of segment electron temperature profile s poitions.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
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-</div><!-- top -->
-<div class="PageDoc"><div class="header">
-  <div class="headertitle">
-<div class="title">Namelist siesta_main_nli definition </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#siesta_namelist_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#siesta_namelist_var_sec">Namelist Variables</a><ul><li class="level2"><a href="#siesta_flag_sec">Control Flags</a></li>
-<li class="level2"><a href="#siesta_algrothim_sec">Algrothim Control Variables</a></li>
-<li class="level2"><a href="#siesta_island_sec">Island Parameters</a></li>
-<li class="level2"><a href="#siesta_grid_size_sec">Grid Sizes</a><ul><li class="level3"><a href="#siesta_grid_size_out_sec">Output Grid Sizes</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#siesta_file_name_sec">File Names</a></li>
-<li class="level2"><a href="#siesta_test_sec">Test Controls</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#siesta_namelist_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="siesta_namelist_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a SIESTA namelist input file. SIESTA namelist variables are defined in the <code>siesta_info</code> common block.</p>
-<h1><a class="anchor" id="siesta_namelist_var_sec"></a>
-Namelist Variables</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<h2><a class="anchor" id="siesta_flag_sec"></a>
-Control Flags</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>ladd_pert</code></td><td width="50%">Use helical perturbation.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a74f4a611349b2a1a425613c724b56519">siesta_namelist::ladd_pert</a> </td></tr>
-<tr>
-<td width="20%"><code>lresistive</code></td><td width="50%">Use resistive perturbation.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#ad156dc8c98ae58ca02dc697f4f48cb41">siesta_namelist::lresistive</a> </td></tr>
-<tr>
-<td width="20%"><code>lrestart</code></td><td width="50%">Restart SIESTA from pervious run.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a33133507bba1231bc8ceaaa642281d27">siesta_namelist::lrestart</a> </td></tr>
-<tr>
-<td width="20%"><code>l_tracing</code></td><td width="50%">Produce output file for fieldline tracing.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#aacab78f4d88efc204f565cd25917d463">siesta_namelist::l_tracing</a> </td></tr>
-<tr>
-<td width="20%"><code>lcolscale</code></td><td width="50%">Use column scaling.</td><td width="30%"><a class="el" href="namespaceshared__data.html#acd61b4f909ffaba70b0084fb06fdc4df">shared_data::lcolscale</a> </td></tr>
-<tr>
-<td width="20%"><code>l_silo_output</code></td><td width="50%">Produce silo output.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a0f0f3577ffa289377e6ae8d12ba7d68e">siesta_namelist::l_silo_output</a> </td></tr>
-<tr>
-<td width="20%"><code>l_silo3D</code></td><td width="50%">Produce silo 3D output.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a83d92599194e6e14d6f17582ad93be35">siesta_namelist::l_silo3d</a> </td></tr>
-<tr>
-<td width="20%"><code>l_output_alliter</code></td><td width="50%">Write output files on all iterations instead of only iterations that lower the MHD energy and force residuals.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a862817756335c5f140475c535775ae6b">siesta_namelist::l_output_alliter</a> </td></tr>
-<tr>
-<td width="20%"><code>l_VMEC_Uniform</code></td><td width="50%">UNKNOWN</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a9ce10cbbca6fbb1464e1b980af9fd4bd">siesta_namelist::l_vmec_uniform</a> </td></tr>
-<tr>
-<td width="20%"><code>lasym</code></td><td width="50%">Use non stellarator symmetric terms.</td><td width="30%"><a class="el" href="namespaceshared__data.html#a5d807a0397226b49764c470d9c2e32a5">shared_data::lasym</a> </td></tr>
-<tr>
-<td width="20%"><code>l_vessel</code></td><td width="50%">Use free-boundary grid extension to vessel wall.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a9cf180f8f8051badebf8399a77a27ec0">siesta_namelist::l_vessel</a> </td></tr>
-<tr>
-<td width="20%"><code>lrecon</code></td><td width="50%">Add additional output to the restart file when used in a reconstruction context. DEPRICATED</td><td width="30%"><a class="el" href="namespaceshared__data.html#af01f56f0921599e96571e9dd049f01c1">shared_data::lrecon</a> </td></tr>
-<tr>
-<td width="20%"><code>l_lambda</code></td><td width="50%">Recompute the VMEC lambda on a SIESTA grid. Fixed boundary only.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#ac64d37e97cd94c6e9eb9643f6405983a">siesta_namelist::l_lambda</a> </td></tr>
-<tr>
-<td width="20%"><code>l_force_restart</code></td><td width="50%">Force writing of the restart file on each iteration.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#af57a51e3891726ea0935c45f09b55c9a">siesta_namelist::l_force_restart</a> </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_algrothim_sec"></a>
-Algrothim Control Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>niter</code></td><td width="50%">Maximum number of iterations after diagonal prec.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#afb27bbf272c0e9e170063a6f4727bf3d">siesta_namelist::niter</a> </td></tr>
-<tr>
-<td width="20%"><code>ftol</code></td><td width="50%">Minimum force tolarance for converged solution.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#ae64f42cf055173d5c482a8cd115f38ab">siesta_namelist::ftol</a> </td></tr>
-<tr>
-<td width="20%"><code>mupar</code></td><td width="50%">Resistivity factor.</td><td width="30%">hessian::mupar </td></tr>
-<tr>
-<td width="20%"><code>levmarq_param</code></td><td width="50%">Inital value of Levenberg-Marquardt parameter.</td><td width="30%">hessian::levmarq_param </td></tr>
-<tr>
-<td width="20%"><code>eta_factor</code></td><td width="50%">Resistivity value.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a5c34fd50cada7045ae178a8fb1b2d259">siesta_namelist::eta_factor</a> </td></tr>
-<tr>
-<td width="20%"><code>nprecon</code></td><td width="50%">Skip diagonal preconditioner if greater than zero.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a1953e5123f43e0a6630d797dde716a22">siesta_namelist::nprecon</a> </td></tr>
-<tr>
-<td width="20%"><code>ngmres_type</code></td><td width="50%">Preconditioner type.</td><td width="30%"><a class="el" href="namespaceshared__data.html#a17742427a611e4fbdf91af6885a78902">shared_data::ngmres_type</a> </td></tr>
-<tr>
-<td width="20%"><code>iortho</code></td><td width="50%">UNKNOWN</td><td width="30%"><a class="el" href="namespaceshared__data.html#a1c4cd51a3ebc3cb3c5d9b9bc7aa08c83">shared_data::iortho</a> </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_island_sec"></a>
-Island Parameters</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>mres</code></td><td width="50%">M numbers of island resonances.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#adc41b9cb1681f385e9f1fe81126fcda4">siesta_namelist::mres</a> </td></tr>
-<tr>
-<td width="20%"><code>helpert</code></td><td width="50%">Sizes of the helical perturbation.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#ab484920d7381a8323343d3c831d5d0c2">siesta_namelist::helpert</a> </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_grid_size_sec"></a>
-Grid Sizes</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>nsin</code></td><td width="50%">Size of plasma radial grid.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a68fde2dc4a7fc24cf54d81ec6d7ce1c9">siesta_namelist::nsin</a> </td></tr>
-<tr>
-<td width="20%"><code>nsin_ext</code></td><td width="50%">Size of extended radial grid.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a5db1f262e269d20f2589a8a9517c154a">siesta_namelist::nsin_ext</a> </td></tr>
-<tr>
-<td width="20%"><code>ntor_type</code></td><td width="50%">Type of toroidal modes. Available types are<ol type="1">
-<li><code>'dense'</code> Use all toroidal modes.</li>
-<li><code>'sparse'</code> Use selected toroidal modes.</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a4d9abc8eca8cb7ad4cbb8a0124cfdf42">siesta_namelist::ntor_type</a> </td></tr>
-<tr>
-<td width="20%"><code>mpolin</code></td><td width="50%">Number of poloidal modes.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a0c32c591d47bf6261c66f521db2f9b13">siesta_namelist::mpolin</a> </td></tr>
-<tr>
-<td width="20%"><code>ntorin</code></td><td width="50%">Number of toroidal modes.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a8d54dbdd3913d2009948fba9e41a19fb">siesta_namelist::ntorin</a> </td></tr>
-<tr>
-<td width="20%"><code>nfpin</code></td><td width="50%">Number of field periods to use. Setting this to anything less than one will use the value form the wout file.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#afdb40d9a582f32071bc4e4d5b3c932c5">siesta_namelist::nfpin</a> </td></tr>
-<tr>
-<td width="20%"><code>ntor_modes</code></td><td width="50%">Sparse toroidal mode numbers.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a39a58bdae616e2d4dbb07be9348a1e37">siesta_namelist::ntor_modes</a> </td></tr>
-</table>
-<h3><a class="anchor" id="siesta_grid_size_out_sec"></a>
-Output Grid Sizes</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>nphis</code></td><td width="50%">Number of cylindrical phi planes.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#aba3567b3968e6c263a69c930338dcbcc">siesta_namelist::nphis</a> </td></tr>
-<tr>
-<td width="20%"><code>nrs</code></td><td width="50%">Number of radial grid points.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#ad31194b302457af042767b2c89e32dcf">siesta_namelist::nrs</a> </td></tr>
-<tr>
-<td width="20%"><code>nzs</code></td><td width="50%">Number of vertical grid points.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#aa2eec19be319194798166084c2801204">siesta_namelist::nzs</a> </td></tr>
-<tr>
-<td width="20%"><code>nvs</code></td><td width="50%">Number of flux space toroidal points.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a48bc8c3a9904f90c87655201c78b3d23">siesta_namelist::nvs</a> </td></tr>
-<tr>
-<td width="20%"><code>nus</code></td><td width="50%">Number of flux space poloidal points.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#aa611c16676737334b9607022cd032fb8">siesta_namelist::nus</a> </td></tr>
-<tr>
-<td width="20%"><code>nss</code></td><td width="50%">Number of flux space radial points.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a029be8c8fd1e187f0df0cc271c0b2752">siesta_namelist::nss</a> </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_file_name_sec"></a>
-File Names</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>wout_file</code></td><td width="50%">Filename of the VMEC woutfile.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">siesta_namelist::wout_file</a> </td></tr>
-<tr>
-<td width="20%"><code>restart_ext</code></td><td width="50%">Name of the restart file extension.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#afc6f7d08fed7c3d94ee39455ed79b02d">siesta_namelist::restart_ext</a> </td></tr>
-<tr>
-<td width="20%"><code>mgrid_file</code></td><td width="50%">Filename of the MGRID file.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#a0786d7fe79a02575fa7080531d16070c">siesta_namelist::mgrid_file</a> </td></tr>
-<tr>
-<td width="20%"><code>vessel_file</code></td><td width="50%">Filename of the extended surfaces.</td><td width="30%"><a class="el" href="namespacesiesta__namelist.html#af552ff3682f00474151794c35b2cbb59">siesta_namelist::vessel_file</a> </td></tr>
-</table>
-<h2><a class="anchor" id="siesta_test_sec"></a>
-Test Controls</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>hesspass_test</code></td><td width="50%">UNKNOWN</td><td width="30%"><a class="el" href="namespaceshared__data.html#abc2e97d9043baaf076efe1e5034b7f84">shared_data::hesspass_test</a> </td></tr>
-<tr>
-<td width="20%"><code>mupar_test</code></td><td width="50%">UNKNOWN</td><td width="30%"><a class="el" href="namespaceshared__data.html#a0661d0f76647ea92b0d6ea69d1bc32cc">shared_data::mupar_test</a> </td></tr>
-</table>
-<h1><a class="anchor" id="siesta_namelist_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement this namelist is found in the <a class="el" href="namespacesiesta__namelist.html">siesta_namelist</a> module. </p>
-</div></div><!-- contents -->
-</div><!-- PageDoc -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-<div class="title">Command Line Arguments </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#siesta_test_cl_parsing_intro">Introduction</a></li>
-<li class="level1"><a href="#siesta_test_cl_parsing_arg_sec">Command Line Arguments</a></li>
-<li class="level1"><a href="#siesta_test_cl_test_names_sec">Test names.</a></li>
-<li class="level1"><a href="#siesta_test_cl_pasring_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="siesta_test_cl_parsing_intro"></a>
-Introduction</h1>
-<p>This contains a description of the command line arguments. All arguments take the form of</p>
-<p><code>-arg=value</code></p>
-<h1><a class="anchor" id="siesta_test_cl_parsing_arg_sec"></a>
-Command Line Arguments</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Argument</code></td><td width="5%">Takes Value</td><td width="75%">Discription</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code><code>-h</code></code></td><td width="5%">N</td><td width="75%">Displays the help text and exits the program. </td></tr>
-<tr>
-<td width="20%"><code><code>-wout_file</code></code></td><td width="5%">Y</td><td width="75%">Specify the wout input file name. </td></tr>
-<tr>
-<td width="20%"><code><code>-restart_file</code></code></td><td width="5%">Y</td><td width="75%">Specify the restart input file name. </td></tr>
-<tr>
-<td width="20%"><code><code>-test_name</code></code></td><td width="5%">Y</td><td width="75%">Name of the test to run. </td></tr>
-<tr>
-<td width="20%"><code><code>-tol</code></code></td><td width="5%">Y</td><td width="75%">Tolarance value. </td></tr>
-<tr>
-<td width="20%"><code><code>-min</code></code></td><td width="5%">Y</td><td width="75%">Minimum radial value. </td></tr>
-<tr>
-<td width="20%"><code><code>-max</code></code></td><td width="5%">Y</td><td width="75%">Maximum radial value. </td></tr>
-<tr>
-<td width="20%"><code><code>-relative</code></code></td><td width="5%">N</td><td width="75%">Use relative error. </td></tr>
-<tr>
-<td width="20%"><code><code>-dump</code></code></td><td width="5%">N</td><td width="75%">Dump values to the screen. </td></tr>
-<tr>
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-Test names.</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="30%"><code>test</code></td><td width="70%">Check a test profile of a known function. </td></tr>
-<tr>
-<td width="30%"><code>r</code></td><td width="70%">Check profiles of r. </td></tr>
-<tr>
-<td width="30%"><code>z</code></td><td width="70%">Check profiles of z. </td></tr>
-<tr>
-<td width="30%"><code>drdu</code></td><td width="70%">Check profiles of drdu. </td></tr>
-<tr>
-<td width="30%"><code>drdv</code></td><td width="70%">Check profiles of drdv. </td></tr>
-<tr>
-<td width="30%"><code>dzdu</code></td><td width="70%">Check profiles of dzdu. </td></tr>
-<tr>
-<td width="30%"><code>dzdv</code></td><td width="70%">Check profiles of dzdv. </td></tr>
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-<td width="30%"><code>phipf</code></td><td width="70%">Check profiles of phipf. </td></tr>
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-<td width="30%"><code>chipf</code></td><td width="70%">Check profiles of chipf. </td></tr>
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-<td width="30%"><code>bsups</code></td><td width="70%">Check profiles of bsups. </td></tr>
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-<td width="30%"><code>bsupu</code></td><td width="70%">Check profiles of bsupu. </td></tr>
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-<td width="30%"><code>bsupv</code></td><td width="70%">Check profiles of bsupv. </td></tr>
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-<td width="30%"><code>bsubs</code></td><td width="70%">Check profiles of bsubs. </td></tr>
-<tr>
-<td width="30%"><code>bsubu</code></td><td width="70%">Check profiles of bsubu. </td></tr>
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-<td width="30%"><code>bsubv</code></td><td width="70%">Check profiles of bsubv. </td></tr>
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-<td width="30%"><code>jbsups</code></td><td width="70%">Check profiles of jbsups. </td></tr>
-<tr>
-<td width="30%"><code>jbsupu</code></td><td width="70%">Check profiles of jbsupu. </td></tr>
-<tr>
-<td width="30%"><code>jbsupv</code></td><td width="70%">Check profiles of jbsupv. </td></tr>
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-<td width="30%"><code>jksups</code></td><td width="70%">Check profiles of jksups. </td></tr>
-<tr>
-<td width="30%"><code>jksupu</code></td><td width="70%">Check profiles of jksupu. </td></tr>
-<tr>
-<td width="30%"><code>jksupv</code></td><td width="70%">Check profiles of jksupv. </td></tr>
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-<td width="30%"><code>jacobian</code></td><td width="70%">Check profiles of the jacobian. </td></tr>
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-<td width="30%"><code>vmec_divb</code></td><td width="70%">Check vmec diveregence of B. </td></tr>
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-</table>
-<h1><a class="anchor" id="siesta_test_cl_pasring_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement command line parsing is found in the <a class="el" href="classcommandline__parser.html">commandline_parser</a> class. </p>
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-</div><!-- PageDoc -->
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-<p>Contains module <a class="el" href="namespacesignal.html">signal</a>.  
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-<tr class="separator:a25e264489ca9153afdb805417a7e52fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9f5b5cd4713e9e7d71a3f7ef772d8621"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:afad11360e689ce7c9e3cad4431035bd7"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:af8b5017e0bb197117d7bdcba69603d3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aa0480190087d9d45e35ec9e9b345ef6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the e contribution of a signal.  <a href="namespacesignal.html#aa0480190087d9d45e35ec9e9b345ef6d">More...</a><br /></td></tr>
-<tr class="separator:aa0480190087d9d45e35ec9e9b345ef6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aebf5d5f26bb348c2df6bedf295718d77"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total sigma^2 of a signal.  <a href="namespacesignal.html#aebf5d5f26bb348c2df6bedf295718d77">More...</a><br /></td></tr>
-<tr class="separator:aebf5d5f26bb348c2df6bedf295718d77"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7f1f415c888be6c78d87d88a48ff0679"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a7f1f415c888be6c78d87d88a48ff0679">signal::signal_get_type</a> (this)</td></tr>
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-<tr class="separator:a7f1f415c888be6c78d87d88a48ff0679"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acbe0039aa08ce6ffc1a7ffc19c64f3e5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#acbe0039aa08ce6ffc1a7ffc19c64f3e5">signal::signal_get_header</a> (this, header)</td></tr>
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-<tr class="separator:acbe0039aa08ce6ffc1a7ffc19c64f3e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">signal::signal_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and a position.  <a href="namespacesignal.html#a014fe1928fcaf5de944ad3e7b2c3e9c9">More...</a><br /></td></tr>
-<tr class="separator:a014fe1928fcaf5de944ad3e7b2c3e9c9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af3f88f23350477f73d4097853ee2e35b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">signal::signal_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:af3f88f23350477f73d4097853ee2e35b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and a signal.  <a href="namespacesignal.html#af3f88f23350477f73d4097853ee2e35b">More...</a><br /></td></tr>
-<tr class="separator:af3f88f23350477f73d4097853ee2e35b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aaf1c5a6f36d6e6ca0e73a5799e8d3018"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">signal::signal_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:aaf1c5a6f36d6e6ca0e73a5799e8d3018"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a signal and cartesian position.  <a href="namespacesignal.html#aaf1c5a6f36d6e6ca0e73a5799e8d3018">More...</a><br /></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bmw_commandline_parser_destruct</b> (defined in <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a>)</td><td class="entry"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>flag_requires_value</b>=&gt; bmw_commandline_parser_flag_requires_value (defined in <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a>)</td><td class="entry"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_integer</b>=&gt; bmw_commandline_parser_get_integer (defined in <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a>)</td><td class="entry"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_string</b>=&gt; bmw_commandline_parser_get_string (defined in <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a>)</td><td class="entry"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_flag_set</b>=&gt; bmw_commandline_parser_is_flag_set (defined in <a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a>)</td><td class="entry"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser::bmw_commandline_parser_class</a></td><td class="entry"></td></tr>
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-<p>Base class containing a parsed bmw_commandline.  
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-<tr class="memitem:a2b300a914ebb6fdce77cf7ec1978e8bc"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html">bmw_commandline_parser_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbmw__commandline__parser_1_1bmw__commandline__parser__class.html#a2b300a914ebb6fdce77cf7ec1978e8bc">bmw_commandline_parser_construct</a> (parallel)</td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html#ab6944f40b6b5380da3f4e01f29924c74">bmw_context_construct</a>(mgrid_file_name, wout_file_name, siesta_file_name, flags, num_p, parallel, io_unit)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html#af2d036c9253345215d2c43fd0c4af919">bmw_context_construct_plasma</a>(wout_file_name, siesta_file_name, flags, num_r, num_p, num_z, rmax, rmin, zmax, zmin, parallel, io_unit)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bmw_context_destruct</b> (defined in <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html#a0356ccf130571a4d6d7316fc4f37bcff">m_grid</a></td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html#af504ab47cd085d740ec7b66ecb21c0ab">p_grid</a></td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_up_grid</b>=&gt; set_up_grid_m, set_up_grid_a, set_up_grid_c (defined in <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_up_grid_m</b>=&gt; bmw_context_set_up_grid_m (defined in <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html#aa8dbb0bfefd01ba986dfdfbfa79f3b5b">vmec</a></td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>=&gt; bmw_context_write (defined in <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context::bmw_context_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a bmw context. This contains all memory needed to operate bmw.  
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-<tr class="memitem:ab6944f40b6b5380da3f4e01f29924c74"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structbmw__context_1_1bmw__context__class.html#ab6944f40b6b5380da3f4e01f29924c74">bmw_context_construct</a> (mgrid_file_name, wout_file_name, siesta_file_name, flags, num_p, parallel, io_unit)</td></tr>
-<tr class="memdesc:ab6944f40b6b5380da3f4e01f29924c74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.  <a href="structbmw__context_1_1bmw__context__class.html#ab6944f40b6b5380da3f4e01f29924c74">More...</a><br /></td></tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
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-<p>Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>Path and name of the mgrid file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Path and name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Path and name of the siesta file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Option flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of phi planes per field period. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_r</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_p</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_z</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>rmin</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>zmax</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-<p>Construct a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>Path and name of the mgrid file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file_name</td><td>Path and name of the wout file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">siesta_file_name</td><td>Path and name of the siesta file. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Option flags. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_r</td><td>Number of radial points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of toroidal points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_z</td><td>Number of vertical points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structbmw__context_1_1bmw__context__class.html">bmw_context_class</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>BMW/Sources/<a class="el" href="bmw__context_8f.html">bmw_context.f</a></li>
-</ul>
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-<div class="title">bmw_parallel_context::bmw_parallel_context_class Member List</div>  </div>
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-
-<p>This is the complete list of members for <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a088ef5900036e5e67f1bae54bd85b861">bmw_parallel_context_construct</a>(comm)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bmw_parallel_context_destruct</b> (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a4f05714e2bde0f3bd75cc421edb738b0">comm</a></td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>end</b>=&gt; bmw_parallel_context_end (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a33d121a4d564a8a8180653bf0ff2cb97">initialized_mpi</a></td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a5642266674984449f64b184dbbcb42cf">num_threads</a></td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a0fb1d6fe9d80ca447889ee89487cadf6">offset</a></td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>reduce</b>=&gt; reduce1, reduce2, reduce3, reduce4 (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reduce1</b>=&gt; bmw_parallel_context_reduce1 (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>reduce2</b>=&gt; bmw_parallel_context_reduce2 (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reduce3</b>=&gt; bmw_parallel_context_reduce3 (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>reduce4</b>=&gt; bmw_parallel_context_reduce4 (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>report</b>=&gt; bmw_parallel_context_report (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_threads</b>=&gt; bmw_parallel_context_set_threads (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>start</b>=&gt; bmw_parallel_context_start (defined in <a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a>)</td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#a90ecfff59b58e6e5ab6d1bf64244b042">stride</a></td><td class="entry"><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a></td><td class="entry"></td></tr>
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diff --git a/html/structbmw__parallel__context_1_1bmw__parallel__context__class.html b/html/structbmw__parallel__context_1_1bmw__parallel__context__class.html
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-<a href="#pub-methods">Public Member Functions</a> &#124;
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-<a href="structbmw__parallel__context_1_1bmw__parallel__context__class-members.html">List of all members</a>  </div>
-  <div class="headertitle">
-<div class="title">bmw_parallel_context::bmw_parallel_context_class Interface Reference</div>  </div>
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-
-<p>Base class representing a bmw parallel context. This contains all memory needed parameters needed to parallel processing.  
- <a href="structbmw__parallel__context_1_1bmw__parallel__context__class.html#details">More...</a></p>
-<table class="memberdecls">
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-<div class="title">combination::combination_class Member List</div>  </div>
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-
-<p>This is the complete list of members for <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>, including all inherited members.</p>
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-  <tr class="even"><td class="entry"><a class="el" href="structcombination_1_1combination__class.html#a1482ab624fb6af56f779e21d000aac35">a</a></td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structcombination_1_1combination__class.html#a63bdead59d722c73519f32eb08356784">combination_construct</a>(n_signals, combination_type, wgt_index)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>combination_destruct</b> (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_i</b>=&gt; signal_get_gp_i (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_x</b>=&gt; signal_get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_header</b>=&gt; combination_get_header (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_last</b>=&gt; combination_get_modeled_signal (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_type</b>=&gt; combination_get_type (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#aea71d7a16b18fb0970ddc2aa01e6b277">l_name</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_signal</b>=&gt; combination_set_signal (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_weight</b>=&gt; combination_set_weight (defined in <a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a>)</td><td class="entry"><a class="el" href="structcombination_1_1combination__class.html">combination::combination_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_last</b>=&gt; ece_get_modeled_signal (defined in <a class="el" href="structece_1_1ece__class.html">ece::ece_class</a>)</td><td class="entry"><a class="el" href="structece_1_1ece__class.html">ece::ece_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#aa5950221a08dd382a96b139e4ddafb32">observed</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr><td class="entry"><a class="el" href="structece_1_1ece__class.html#a5e9b4d1348955282fb207a38381db18b">resonance</a></td><td class="entry"><a class="el" href="structece_1_1ece__class.html">ece::ece_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#ac189e7767d60286a0f70faa5fce91dd1">s_name</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_child</b>=&gt; signal_sync_child (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<div class="header">
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-<a href="#pub-attribs">Public Attributes</a> &#124;
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-
-<p>Base class representing the soft x-ray emission function.  
- <a href="structemission_1_1emission__class.html#details">More...</a></p>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structemission_1_1emission__class.html#a8c9e94a46561f055181fe240ba242f4a">te_start</a> = 0.0</td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structemission_1_1emission__class.html#aad3b87d7c9017ca5fe4316c9c4eb936e">te_step</a> = 0.0</td></tr>
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-real(rprec), dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structemission_1_1emission__class.html#ab69b2f9144b9f8eb6eba8e97cad15a6e">emissivity</a> =&gt; null()</td></tr>
-<tr class="memdesc:ab69b2f9144b9f8eb6eba8e97cad15a6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">X-Ray Emission function. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing the soft x-ray emission function. </p>
-</div><hr/>The documentation for this type was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="emission_8f.html">emission.f</a></li>
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-  <div class="headertitle">
-<div class="title">equilibrium::equilibrium_class Member List</div>  </div>
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-
-<p>This is the complete list of members for <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>converge</b>=&gt; equilibrium_converge (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>def_result</b>=&gt; equilibrium_def_result (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>equilibrium_destruct</b> (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html#acda058731cbf9b3deeba5058de328519">force_solve</a></td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_area_int_element</b>=&gt; equilibrium_get_area_int_element (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_b_vec</b>=&gt; equilibrium_get_b_vec (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_con_surface_kphigrid</b>=&gt; equilibrium_get_con_surface_kphigrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_con_surface_krgrid</b>=&gt; equilibrium_get_con_surface_krgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_con_surface_kzgrid</b>=&gt; equilibrium_get_con_surface_kzgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ext_b_plasma</b>=&gt; equilibrium_get_ext_b_plasma (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ext_currents</b>=&gt; equilibrium_get_ext_currents (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne</b>=&gt; get_gp_ne_ij, get_gp_ne_pi, get_gp_ne_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_ij</b>=&gt; equilibrium_get_gp_ne_ij (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_num_hyper_param</b>=&gt; equilibrium_get_gp_ne_num_hyper_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_pi</b>=&gt; equilibrium_get_gp_ne_pi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_pp</b>=&gt; equilibrium_get_gp_ne_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem</b>=&gt; get_gp_sxrem_ij, get_gp_sxrem_pi, get_gp_sxrem_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_ij</b>=&gt; equilibrium_get_gp_sxrem_ij (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_num_hyper_param</b>=&gt; equilibrium_get_gp_sxrem_num_hyper_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_pi</b>=&gt; equilibrium_get_gp_sxrem_pi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_pp</b>=&gt; equilibrium_get_gp_sxrem_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te</b>=&gt; get_gp_te_ij, get_gp_te_pi, get_gp_te_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_ij</b>=&gt; equilibrium_get_gp_te_ij (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_num_hyper_param</b>=&gt; equilibrium_get_gp_te_num_hyper_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_pi</b>=&gt; equilibrium_get_gp_te_pi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_pp</b>=&gt; equilibrium_get_gp_te_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti</b>=&gt; get_gp_ti_ij, get_gp_ti_pi, get_gp_ti_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_ij</b>=&gt; equilibrium_get_gp_ti_ij (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_num_hyper_param</b>=&gt; equilibrium_get_gp_ti_num_hyper_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_pi</b>=&gt; equilibrium_get_gp_ti_pi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_pp</b>=&gt; equilibrium_get_gp_ti_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_size</b>=&gt; equilibrium_get_grid_size (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_start</b>=&gt; equilibrium_get_grid_start (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_stop</b>=&gt; equilibrium_get_grid_stop (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_int_b_dphi</b>=&gt; equilibrium_get_int_b_dphi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jphigrid</b>=&gt; equilibrium_get_magnetic_volume_jphigrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_jrgrid</b>=&gt; equilibrium_get_magnetic_volume_jrgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jzgrid</b>=&gt; equilibrium_get_magnetic_volume_jzgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_rgrid</b>=&gt; equilibrium_get_magnetic_volume_rgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_zgrid</b>=&gt; equilibrium_get_magnetic_volume_zgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne</b>=&gt; get_ne_cart, get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_af</b>=&gt; equilibrium_get_ne_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_cart</b>=&gt; equilibrium_get_ne_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_radial</b>=&gt; equilibrium_get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p</b>=&gt; get_p_cart, get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p_cart</b>=&gt; equilibrium_get_p_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p_radial</b>=&gt; equilibrium_get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_id</b>=&gt; equilibrium_get_param_id (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_name</b>=&gt; equilibrium_get_param_name (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_value</b>=&gt; equilibrium_get_param_value (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_plasma_edge</b>=&gt; equilibrium_get_plasma_edge (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem</b>=&gt; get_sxrem_cart, get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_af</b>=&gt; equilibrium_get_sxrem_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_cart</b>=&gt; equilibrium_get_sxrem_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_radial</b>=&gt; equilibrium_get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te</b>=&gt; get_te_cart, get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_af</b>=&gt; equilibrium_get_te_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_cart</b>=&gt; equilibrium_get_te_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_radial</b>=&gt; equilibrium_get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti</b>=&gt; get_ti_cart, get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_af</b>=&gt; equilibrium_get_ti_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_cart</b>=&gt; equilibrium_get_ti_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_radial</b>=&gt; equilibrium_get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_type</b>=&gt; equilibrium_get_type (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_volume_int_element</b>=&gt; equilibrium_get_volume_int_element (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_2d_array</b>=&gt; equilibrium_is_2d_array (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_recon_param</b>=&gt; equilibrium_is_recon_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_scaler_value</b>=&gt; equilibrium_is_scaler_value (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_using_point</b>=&gt; equilibrium_is_using_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_vac_file</b>=&gt; equilibrium_read_vac_file (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_state</b>=&gt; equilibrium_reset_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>restart</b>=&gt; equilibrium_restart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_state</b>=&gt; equilibrium_save_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache</b>=&gt; set_magnetic_cache_response, set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_point</b>=&gt; equilibrium_set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache_response</b>=&gt; equilibrium_set_magnetic_cache_response (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_param</b>=&gt; equilibrium_set_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; equilibrium_sync_child (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_state</b>=&gt; equilibrium_sync_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>=&gt; equilibrium_write (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_init_data</b>=&gt; equilibrium_write_init_data (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_input</b>=&gt; equilibrium_write_input (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_step_data</b>=&gt; equilibrium_write_step_data (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
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-<li class="navelem"><a class="el" href="namespaceequilibrium.html">equilibrium</a></li><li class="navelem"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium_class</a></li>  </ul>
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-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pub-attribs">Public Attributes</a> &#124;
-<a href="structequilibrium_1_1equilibrium__class-members.html">List of all members</a>  </div>
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-<div class="title">equilibrium::equilibrium_class Type Reference</div>  </div>
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-<p>Base class representing a equilibrium.  
- <a href="structequilibrium_1_1equilibrium__class.html#details">More...</a></p>
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-Inheritance diagram for equilibrium::equilibrium_class:</div>
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-PROCEDURE&#160;</td><td class="memItemRight" valign="bottom"><b>set_param</b> =&gt; <a class="el" href="namespaceequilibrium.html#ae25254f1165258631e26d4a34b34c206">equilibrium_set_param</a></td></tr>
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-PROCEDURE&#160;</td><td class="memItemRight" valign="bottom"><b>get_param_name</b> =&gt; <a class="el" href="namespaceequilibrium.html#a53677debed221aa3ab4a836e965e9a41">equilibrium_get_param_name</a></td></tr>
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-PROCEDURE&#160;</td><td class="memItemRight" valign="bottom"><b>get_te_af</b> =&gt; <a class="el" href="namespaceequilibrium.html#a3d3fcf615ad1a19de07e4306cde0ac23">equilibrium_get_te_af</a></td></tr>
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-  <tr><td class="entry"><a class="el" href="structextcurz_1_1extcurz__class.html#ae64f8fc21e6457a62700d2d42930bb62">theta</a></td><td class="entry"><a class="el" href="structextcurz_1_1extcurz__class.html">extcurz::extcurz_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bcval2max</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bcval2min</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bcval3max</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bcval3min</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fspl</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>hspline</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ibctype1</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ibctype2</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ibctype3</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ilin1</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ilin2</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ilin3</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ishermite</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>ishybrid</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>islinear</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>isready</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>klookup1</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>klookup2</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>klookup3</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>n1</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>n2</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>n3</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>nguard</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x1</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x1max</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x1min</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x1pkg</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x2</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x2max</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x2min</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x2pkg</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x3</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x3max</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>x3min</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>x3pkg</b> (defined in <a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a>)</td><td class="entry"><a class="el" href="structezspline__type_1_1ezspline3__r4.html">ezspline_type::ezspline3_r4</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#acc46600e8169f1fb6f1f10c79568e537">cosmu</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a29fa97b6d9d192068e186d6b020754d4">cosmui</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-  <tr><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a4ed9dd60ff51dc97658107b8f9bf70d7">cosnv</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#ac02e5b61b1d72f6538b2244217b2745b">cosnvn</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a0d184fe9031824c11a0b5c031db6581f">fourier_construct</a>(mpol, ntor, ntheta, nzeta, nfp, sym, tor_modes)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>fourier_destruct</b> (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_index</b>=&gt; fourier_get_index (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_origin</b>=&gt; fourier_get_origin (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a03b9fc569beac3def7b96b55a2507582">orthonorm</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a149797c8d34416ee2b2b382df812d110">sinmu</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html#a6baec980b314584c0d793e2b8774b3d3">sinmui</a></td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>toijsp</b>=&gt; toijsp_2d, toijsp_3d (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>toijsp_2d</b>=&gt; fourier_toijsp_2d (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>tomnsp_2d_pest</b> (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>tomnsp_2d_u_pest</b>=&gt; fourier_tomnsp_2d_u_pest (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>tomnsp_2d_u_pest</b> (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>tomnsp_2d_v</b>=&gt; fourier_tomnsp_2d_v (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>tomnsp_3d_pest</b> (defined in <a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a>)</td><td class="entry"><a class="el" href="structfourier_1_1fourier__class.html">fourier::fourier_class</a></td><td class="entry"></td></tr>
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-<a href="#pub-methods">Public Member Functions</a> &#124;
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-<p>Base class containing fourier memory.  
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class containing fourier memory. </p>
-<p>Interface for the fourier constructor. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="a0d184fe9031824c11a0b5c031db6581f"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0d184fe9031824c11a0b5c031db6581f">&#9670;&nbsp;</a></span>fourier_construct()</h2>
-
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a>) function, pointer fourier::fourier_class::fourier_construct </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>mpol</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntor</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>ntheta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nzeta</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>nfp</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>sym</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, dimension(-ntor:ntor), intent(in)&#160;</td>
-          <td class="paramname"><em>tor_modes</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structfourier_1_1fourier__class.html">fourier_class</a> object. Computes the othronorm and cosine and sine buffers.</p>
-<p>This subroutine computes the cosine-sine factors that will be needed when moving between Fourier and real space. All normalizations are contained in the poloidal quantities used in the Fourier to real space transformation:</p><ul>
-<li>sinmui</li>
-<li>cosmui</li>
-</ul>
-<p>Fourier representations are assumed to have stellarator symmetry: *# cosine (iparity=0): C(u, v) = sum_u sum_v (C_mn COS(mu + n*nfp*v)) *# sine (iparity=1): S(u, v) = sum_u sum_v (S_mn SIN(mu + n*nfp*v))</p>
-<p>The number of collocation points have been set initalially equal to the number of modes: theta_j = j*pi/M, j = 0,...,M Where M = mpol - 1 zeta_k = k*2*pi/(2N + 1) k = 0,...,2N Where N = ntor.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mpol</td><td>Number of poloidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntor</td><td>Number of toroidal modes. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ntheta</td><td>Number of poloidal real grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nzeta</td><td>Number of toroidal real grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">nfp</td><td>Number of field periods. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sym</td><td>Symmetry flag. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">tor_modes</td><td>Toroidal mode numbers. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>SIESTA/Sources/<a class="el" href="fourier_8f90.html">fourier.f90</a></li>
-</ul>
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-<li class="navelem"><b>gmres_lib</b></li><li class="navelem"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_info</a></li>  </ul>
-</div>
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-<div class="title">gmres_lib::gmres_info Member List</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This is the complete list of members for <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>, including all inherited members.</p>
-<table class="directory">
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>cntl</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>info</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>l_nonlinear</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>mblk_size</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>ngmres_type</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>nprocs</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>rcounts</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>startglobrow</b> (defined in <a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a>)</td><td class="entry"><a class="el" href="structgmres__lib_1_1gmres__info.html">gmres_lib::gmres_info</a></td><td class="entry"></td></tr>
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-  <div class="summary">
-<a href="#pub-attribs">Public Attributes</a> &#124;
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-  <div class="headertitle">
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-
-<p>Base class representing a gaussian process.  
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-<table class="memberdecls">
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-<div class="textblock"><p>Base class representing a gaussian process. </p>
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-<h2 class="memtitle"><span class="permalink"><a href="#acf90c97ebf6aadee0e78c2b7aa2f974a">&#9670;&nbsp;</a></span>flags</h2>
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-<p>Type descriptor of the gaussian procees type. </p>
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-<li>gaussp_ne_type </li>
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-
-</div>
-</div>
-<hr/>The documentation for this type was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="guassian__process_8f.html">guassian_process.f</a></li>
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-<p>Pointer to a gaussian process object. Used for creating arrays of gaussian process pointers. This is needed because fortran does not allow arrays of pointers directly.  
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-</div><hr/>The documentation for this type was generated from the following file:<ul>
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-  <tr><td class="entry"><a class="el" href="structintegration__path_1_1integration__path__class.html#a353949be0a762ea53788fb9b722179e3">integration_path_construct</a>()</td><td class="entry"><a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path::integration_path_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_i</b>=&gt; intpol_get_gp_i (defined in <a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a>)</td><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_s</b>=&gt; intpol_get_gp_s (defined in <a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a>)</td><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_x</b>=&gt; intpol_get_gp_x (defined in <a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a>)</td><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_header</b>=&gt; signal_get_header (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_last</b>=&gt; intpol_get_modeled_signal (defined in <a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a>)</td><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sigma2</b>=&gt; signal_get_sigma2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html#a3a2c257e9df2095a2334346541e46d1e">intpol_construct</a>(chord_paths)</td><td class="entry"><a class="el" href="structintpol_1_1intpol__class.html">intpol::intpol_class</a></td><td class="entry"></td></tr>
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-  <tr><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a391bc77f5bf72edb82fe05335adc38b7">modeled</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a10a2ce7dcc4fa80ba85d732c2b41336f">observed_sigma</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>scale_and_offset</b>=&gt; signal_scale_and_offset (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_child</b>=&gt; signal_sync_child (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a7888c74513301e4bc98fad7eb6f78384">units</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a interferometer signal.  
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-<p>Base class representing a polarimetry signal.  
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-<p>Construct a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object representing a polarimetry diagnostic. </p>
-<p>Allocates memory and initializes a <a class="el" href="structintpol_1_1intpol__class.html">intpol_class</a> object.</p>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Specifies if the sigals is degrees or radians. True specifies degree while false specifies radians. </td></tr>
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-
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-<hr/>The documentation for this interface was generated from the following file:<ul>
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-</ul>
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-  <tr class="even"><td class="entry"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html#a5ee65429553e091986e3a9ad07306ddc">grid</a></td><td class="entry"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid::limiter_grid_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>limiter_destruct</b> (defined in <a class="el" href="structlimiter_1_1limiter__class.html">limiter::limiter_class</a>)</td><td class="entry"><a class="el" href="structlimiter_1_1limiter__class.html">limiter::limiter_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html#a2a21be1875090cfb7a7de4737bec2d21">limiter_grid_construct</a>(lgrid_file, on_edge)</td><td class="entry"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid::limiter_grid_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>limiter_grid_destruct</b> (defined in <a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid::limiter_grid_class</a>)</td><td class="entry"><a class="el" href="structlimiter__grid_1_1limiter__grid__class.html">limiter_grid::limiter_grid_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a391bc77f5bf72edb82fe05335adc38b7">modeled</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a limiter_iso function. </p>
-<p>Interface for iso contour limiter constructor.</p>
-<p>1) Limiter iso: limiter_iso Contains the data to define a scalar function of position, so that the iso-contour f=0 of the function corresponds to a geometric limit to the plasma. Also contains data to specify the minimum number poloidal points on the s=1 surface to use, and the toroidal planes on which to s=1 surface will be evaluated</p>
-<p>Second attempt:</p>
-<p>e = SUM_over_i(0,4)_j(0,4) [arz(i,j) (r - rc)^i (z - zc)^j] f = e / |grad(e)|</p>
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-<li><dl class="section note"><dt>Note</dt><dd></dd></dl>
-</li>
-</ul>
-<ol type="1">
-<li>For now, axisymmetric</li>
-<li>Easy to put in circles, ellipses, and planes</li>
-<li>Function f is approximately distance. </li>
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-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
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-<h2 class="memtitle"><span class="permalink"><a href="#a7f0577eaa3c7bca9a89f5949071787f1">&#9670;&nbsp;</a></span>limiter_iso_construct()</h2>
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-  <tr class="even"><td class="entry"><a class="el" href="structm__grid_1_1m__grid__class.html#ae18c2a3b40b21a1afd0604023ea5d4c4">m_grid_construct</a>(mgrid_file_name, parallel, io_unit, vmec)</td><td class="entry"><a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structm__grid_1_1m__grid__class.html#a689666e156f0655045ab34a53b84414d">m_grid_construct_plasma</a>(num_r, num_p, num_z, rmax, rmin, zmax, zmin, parallel, io_unit, vmec)</td><td class="entry"><a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a></td><td class="entry"></td></tr>
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-<tr class="memitem:ae18c2a3b40b21a1afd0604023ea5d4c4"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structm__grid_1_1m__grid__class.html#ae18c2a3b40b21a1afd0604023ea5d4c4">m_grid_construct</a> (mgrid_file_name, parallel, io_unit, vmec)</td></tr>
-<tr class="memdesc:ae18c2a3b40b21a1afd0604023ea5d4c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object.  <a href="structm__grid_1_1m__grid__class.html#ae18c2a3b40b21a1afd0604023ea5d4c4">More...</a><br /></td></tr>
-<tr class="separator:ae18c2a3b40b21a1afd0604023ea5d4c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:af9cb7ad35ed9218e00760cabe7542e97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector potential in the R direction. <br /></td></tr>
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-<tr class="memdesc:a1a24568fe4859c23005039c181096e6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector potential in the Phi direction. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a m grid. This is grid contains information about the vacuum fields. </p>
-<p>Interface for the <a class="el" href="namespacebmw__commandline__parser.html" title="Defines the base class of the type bmw_commandline_parser_class.">bmw_commandline_parser</a> constructor. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="ae18c2a3b40b21a1afd0604023ea5d4c4"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ae18c2a3b40b21a1afd0604023ea5d4c4">&#9670;&nbsp;</a></span>m_grid_construct()</h2>
-
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-<div class="memproto">
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-        <tr>
-          <td class="memname">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>) function, pointer m_grid::m_grid_class::m_grid_construct </td>
-          <td>(</td>
-          <td class="paramtype">character (len=*), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid_file_name</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
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-        <tr>
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-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>&#160;</td>
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-
-<p>Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object with an mgrid file.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid_file_name</td><td>File name for vacuum fields. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>The vmec file object. </td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#a689666e156f0655045ab34a53b84414d">&#9670;&nbsp;</a></span>m_grid_construct_plasma()</h2>
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-          <td class="memname">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>) function, pointer m_grid::m_grid_class::m_grid_construct_plasma </td>
-          <td>(</td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_r</em>, </td>
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-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>num_p</em>, </td>
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-        <tr>
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-          <td class="paramtype">integer, intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramkey"></td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>parallel</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>io_unit</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a>), intent(in), pointer&#160;</td>
-          <td class="paramname"><em>vmec</em>&#160;</td>
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-
-<p>Construct a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> for plasma only responce on a manual grid.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_r</td><td>Number of radial points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_p</td><td>Number of toroidal points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">num_z</td><td>Number of vertical points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmax</td><td>Maximum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">rmin</td><td>Minimum radial position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmax</td><td>Maximum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">zmin</td><td>Minimum vertical position. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td>bmw_parallel_context_class object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>The vmec file object. </td></tr>
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-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>BMW/Sources/<a class="el" href="m__grid_8f.html">m_grid.f</a></li>
-</ul>
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-<li class="navelem"><a class="el" href="namespacemagnetic.html">magnetic</a></li><li class="navelem"><a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a></li>  </ul>
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-  <tr class="even"><td class="entry"><a class="el" href="structmagnetic_1_1magnetic__class.html#a4ccf47415ce08fe004948d14d27b9fd4">control_flags</a></td><td class="entry"><a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic::magnetic_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_i</b>=&gt; signal_get_gp_i (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_s</b>=&gt; signal_get_gp_s (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_x</b>=&gt; signal_get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>magnetic_destruct</b> (defined in <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic::magnetic_class</a>)</td><td class="entry"><a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic::magnetic_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#aae5e549be177848b8b7c1bf8c296aee6">modeled_sigma</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a10a2ce7dcc4fa80ba85d732c2b41336f">observed_sigma</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structmagnetic_1_1magnetic__class.html#abc1bab11526f89415a17836014839198">response</a></td><td class="entry"><a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic::magnetic_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>scale_and_offset</b>=&gt; signal_scale_and_offset (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a magnetic signal response function. </p>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne</b>=&gt; get_gp_ne_ij, get_gp_ne_pi, get_gp_ne_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_ij</b>=&gt; model_get_gp_ne_ij (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_num_hyper_param</b>=&gt; model_get_gp_ne_num_hyper_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_pi</b>=&gt; model_get_gp_ne_pi (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_pp</b>=&gt; model_get_gp_ne_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem</b>=&gt; get_gp_sxrem_ij, get_gp_sxrem_pi, get_gp_sxrem_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_ij</b>=&gt; model_get_gp_sxrem_ij (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_num_hyper_param</b>=&gt; model_get_gp_sxrem_num_hyper_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_pi</b>=&gt; model_get_gp_sxrem_pi (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_pp</b>=&gt; model_get_gp_sxrem_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te</b>=&gt; get_gp_te_ij, get_gp_te_pi, get_gp_te_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_ij</b>=&gt; model_get_gp_te_ij (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_num_hyper_param</b>=&gt; model_get_gp_te_num_hyper_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_pi</b>=&gt; model_get_gp_te_pi (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_pp</b>=&gt; model_get_gp_te_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti</b>=&gt; get_gp_ti_ij, get_gp_ti_pi, get_gp_ti_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_ij</b>=&gt; model_get_gp_ti_ij (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_num_hyper_param</b>=&gt; model_get_gp_ti_num_hyper_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_pi</b>=&gt; model_get_gp_ti_pi (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_pp</b>=&gt; model_get_gp_ti_pp (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne</b>=&gt; get_ne_cart, get_ne_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_af</b>=&gt; model_get_ne_af (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_cart</b>=&gt; model_get_ne_cart (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_radial</b>=&gt; model_get_ne_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_type</b>=&gt; model_get_ne_type (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_id</b>=&gt; model_get_param_id (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_name</b>=&gt; model_get_param_name (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_value</b>=&gt; model_get_param_value (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_signal_factor</b>=&gt; model_get_signal_factor (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_signal_offset</b>=&gt; model_get_signal_offset (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem</b>=&gt; get_sxrem_cart, get_sxrem_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_af</b>=&gt; model_get_sxrem_af (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_cart</b>=&gt; model_get_sxrem_cart (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_radial</b>=&gt; model_get_sxrem_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_ratio</b>=&gt; model_get_sxrem_ratio (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_type</b>=&gt; model_get_sxrem_type (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te</b>=&gt; get_te_cart, get_te_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_af</b>=&gt; model_get_te_af (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_cart</b>=&gt; model_get_te_cart (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_radial</b>=&gt; model_get_te_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_type</b>=&gt; model_get_te_type (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti</b>=&gt; get_ti_cart, get_ti_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_af</b>=&gt; model_get_ti_af (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_cart</b>=&gt; model_get_te_cart (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_radial</b>=&gt; model_get_ti_radial (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_type</b>=&gt; model_get_ti_type (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a567f5c565127e6829ec5e04dbaad8826">grid_start</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a247edaa21ae9eaa5ea820ca976af1445">grid_step</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a680aa8269271244d6b9ca09af96eb186">int_params</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_recon_param</b>=&gt; model_is_recon_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a5ac89c01e086265e985a5a4bbf04636a">model_construct</a>(ne_type, sxrem_type, te_type, ti_type, ne_unit, ne_min, te_min, ti_min, sxrem_min, pressure_fraction, emission, equilibrium, sxrem_te, sxrem_ratio, resonace_range, coosig_wgts, state_flags, signal_factor, signal_offset, int_params)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>model_destruct</b> (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a4b715366e74c2cabc1ae86964c4ba19d">ne_grid</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structmodel_1_1model__class.html#ad0c9a9c35a6a1ed07c062338bc2fd041">ne_min</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a6d398cba565b1c43bb47e56af3617f02">ne_type</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structmodel_1_1model__class.html#ace2ede44f1e935e64dc731326d85b009">ne_unit</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#abcc0d9be14123f800b8fec2ed2dda034">pressure_fraction</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_state</b>=&gt; model_reset_state (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a82be6dde7d49e42791481574384553f9">resonace_range</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>restart</b>=&gt; model_restart (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>save_state</b>=&gt; model_save_state (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_grid_params</b>=&gt; model_set_grid_params (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_grid_profiles</b>=&gt; model_set_grid_profiles (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_param</b>=&gt; model_set_param (defined in <a class="el" href="structmodel_1_1model__class.html">model::model_class</a>)</td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#acb04711e18d5ad032c0f3dc18dd22352">signal_factor</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a5dd292c5d8307c795fb9509eb9b3d4a2">signal_offset</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a3385fb1d7d2f4ead045e7f46fc34ec78">state_flags</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structmodel_1_1model__class.html#a2ef64f2a8cc0059e1539ce915434d50d">sxrem_grid</a></td><td class="entry"><a class="el" href="structmodel_1_1model__class.html">model::model_class</a></td><td class="entry"></td></tr>
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-<tr class="memdesc:a5ac89c01e086265e985a5a4bbf04636a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> containing an <a class="el" href="namespaceequilibrium.html">equilibrium</a> object.  <a href="structmodel_1_1model__class.html#a5ac89c01e086265e985a5a4bbf04636a">More...</a><br /></td></tr>
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-<tr class="memitem:a5dd292c5d8307c795fb9509eb9b3d4a2"><td class="memItemLeft" align="right" valign="top"><a id="a5dd292c5d8307c795fb9509eb9b3d4a2"></a>
-real(rprec), dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmodel_1_1model__class.html#a5dd292c5d8307c795fb9509eb9b3d4a2">signal_offset</a> =&gt; null()</td></tr>
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-class(<a class="el" href="structintegration__path_1_1integration__path__class.html">integration_path_class</a>), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmodel_1_1model__class.html#a680aa8269271244d6b9ca09af96eb186">int_params</a> =&gt; null()</td></tr>
-<tr class="memdesc:a680aa8269271244d6b9ca09af96eb186"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integration parameters. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a model. </p>
-<p>Interface for the construction of mse_class types using mse_construct_vec or mse_construct_rad. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
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-<h2 class="memtitle"><span class="permalink"><a href="#a5ac89c01e086265e985a5a4bbf04636a">&#9670;&nbsp;</a></span>model_construct()</h2>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">character (len=data_name_length), dimension(:), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">character (len=data_name_length), intent(in)&#160;</td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>ne_min</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>te_min</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramname"><em>sxrem_min</em>, </td>
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-          <td class="paramname"><em>pressure_fraction</em>, </td>
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-          <td class="paramkey"></td>
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-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
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-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
-          <td class="paramname"><em>signal_factor</em>, </td>
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-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:), intent(in)&#160;</td>
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-
-<p>Construct a <a class="el" href="structmodel_1_1model__class.html">model_class</a> containing an <a class="el" href="namespaceequilibrium.html">equilibrium</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmodel_1_1model__class.html">model_class</a> object. </p><dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_type</td><td>Model type for the electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_type</td><td>Model type for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te_type</td><td>Model type for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti_type</td><td>Model type for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_unit</td><td>Scaleing of the electron denisty. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ne_min</td><td>Minimum electron density. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">te_min</td><td>Minimum electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti_min</td><td>Minimum ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_min</td><td>Minimum soft x-ray emission. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pressure_fraction</td><td>Fraction of the pressure provided by electrons. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">equilibrium</td><td>An instance of an <a class="el" href="namespaceequilibrium.html">equilibrium</a>. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem_te</td><td>Soft x-ray ratio function te. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname"><a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a></td><td>Soft x-ray ratio function ratio. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">resonace_range</td><td>ECE resonance interval. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">coosig_wgts</td><td>Combination Signal Weights </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">not_converged</td><td>If true the equilibrium was constructed in an unconverged state. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">state_flags</td><td>Bitwise flags to indicate which parts of the model changed. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_factor</td><td>Array of signal factors to scale model signals by. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">signal_offset</td><td>Array of signal factors to offset model signals by. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">int_params</td><td>Parameters for the integration method. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmodel_1_1model__class.html">model_class</a> object. </dd></dl>
-
-</div>
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-<hr/>The documentation for this interface was generated from the following file:<ul>
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-<li class="navelem"><a class="el" href="namespacemse.html">mse</a></li><li class="navelem"><a class="el" href="structmse_1_1mse__class.html">mse_class</a></li>  </ul>
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-<p>This is the complete list of members for <a class="el" href="structmse_1_1mse__class.html">mse::mse_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structmse_1_1mse__class.html#a7e0bdbfc8e2b9b7740d634403c78e83a">alpha</a></td><td class="entry"><a class="el" href="structmse_1_1mse__class.html">mse::mse_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_last</b>=&gt; mse_get_modeled_signal (defined in <a class="el" href="structmse_1_1mse__class.html">mse::mse_class</a>)</td><td class="entry"><a class="el" href="structmse_1_1mse__class.html">mse::mse_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<p>Allocates memory and initializes a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. Uses angle representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">point</td><td>Measurement point of the mse diagnostic. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">omega</td><td>Angle between the neutral beam and the toroidal in the horizontal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">alpha</td><td>Angle between the view chord and the toroidal in the horizontal. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">delta</td><td>Pitch angle to the horizontal and the neutral beam. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>Pitch angle to the horizontal and the view chord. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Channel measures degrees. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ratio</td><td>Channel measures ratio. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. </dd></dl>
-
-</div>
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-          <td>(</td>
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-          <td class="paramname"><em>point</em>, </td>
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-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>view_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>view_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>beam_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(3), intent(in)&#160;</td>
-          <td class="paramname"><em>beam_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>in_degrees</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>is_ratio</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Construct a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object representing a motional stark effect diagnostic. </p>
-<p>Allocates memory and initializes a <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. Uses vector representation.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">point</td><td>Measurement point of the mse diagnostic. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">view_start</td><td>Starting point of the view vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">view_end</td><td>Ending point of the view vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">beam_start</td><td>Starting point of the beam vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">beam_end</td><td>Ending point of the beam vector. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">in_degrees</td><td>Channel measures degrees. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">is_ratio</td><td>Channel measures ratio. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structmse_1_1mse__class.html">mse_class</a> object. </dd></dl>
-
-</div>
-</div>
-<hr/>The documentation for this interface was generated from the following file:<ul>
-<li>V3FIT/Sources/<a class="el" href="mse_8f.html">mse.f</a></li>
-</ul>
-</div><!-- contents -->
-<!-- start footer part -->
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-  <td id="projectlogo"><img alt="Logo" src="flux_surfaces.png"/></td>
-  <td id="projectalign" style="padding-left: 0.5em;">
-   <div id="projectname">Stellarator-Tools
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-<div id="nav-path" class="navpath">
-  <ul>
-<li class="navelem"><a class="el" href="namespacepprofile__t.html">pprofile_t</a></li><li class="navelem"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a></li>  </ul>
-</div>
-</div><!-- top -->
-<div class="header">
-  <div class="headertitle">
-<div class="title">pprofile_t::pprofile_class Member List</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>This is the complete list of members for <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr class="even"><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a8e7c9cbd88e4e2941e041365c593ec69">af</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a93f23406d8927e7b19a6570f8ee4becb">as</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#af05580e2ec73c7d8098259d97bc22c22">b</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a1f043520851b656c494842e2a9a7bd15">cache</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#adb5dc03f826e524a643ee8091297ce45">cache_hyper</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_ij, get_gp_pi, get_gp_pp (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ij</b>=&gt; pprofile_get_gp_ij (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_num_hyper_param</b>=&gt; pprofile_get_gp_num_hyper_param (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_pi</b>=&gt; pprofile_get_gp_pi (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_pp</b>=&gt; pprofile_get_gp_pp (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p_type_name</b>=&gt; pprofile_get_p_type_name (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_value</b>=&gt; pprofile_get_value (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a6aa9f28a49c8bbd40180b4423974d9fd">maxsplineindex</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a0b46f577c29bf1d7727d9acdee5be529">p_type</a></td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a62289625f6095d43728319b18c0ca22b">pprofile_construct</a>(p_type, b, as, af)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>pprofile_destruct</b> (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_state</b>=&gt; pprofile_reset_state (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>save_state</b>=&gt; pprofile_save_state (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; pprofile_write (defined in <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a>)</td><td class="entry"><a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_t::pprofile_class</a></td><td class="entry"></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structpprofile__t_1_1pprofile__class.html#a0b46f577c29bf1d7727d9acdee5be529">p_type</a> = pprofile_none_type</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a parameterized profile. </p>
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-<h2 class="memtitle"><span class="permalink"><a href="#a62289625f6095d43728319b18c0ca22b">&#9670;&nbsp;</a></span>pprofile_construct()</h2>
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-<p>Construct a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>. </p>
-<p>Allocates memory and initializes a <a class="el" href="structpprofile__t_1_1pprofile__class.html">pprofile_class</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
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-    <tr><td class="paramdir">[in]</td><td class="paramname">b</td><td>Array of functional profile coefficients </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">as</td><td>Array of segmented radial positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">af</td><td>Array of segmented profile values. </td></tr>
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-
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-          <td class="paramkey"></td>
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-<p>Allocates memory and initializes a <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a> object depending on the option flags.</p>
-<dl class="params"><dt>Parameters</dt><dd>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">flags</td><td>Number of toroidal grid points. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>VMEC file object. </td></tr>
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-
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-
-<p>This is the complete list of members for <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_i</b>=&gt; prior_gaussian_get_gp_i (defined in <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>)</td><td class="entry"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_s</b>=&gt; prior_gaussian_get_gp_s (defined in <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>)</td><td class="entry"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_x</b>=&gt; prior_gaussian_get_gp_x (defined in <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>)</td><td class="entry"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_last</b>=&gt; prior_gaussian_get_modeled_signal (defined in <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>)</td><td class="entry"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sigma2</b>=&gt; signal_get_sigma2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a7888c74513301e4bc98fad7eb6f78384">units</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_auxiliary</b>=&gt; prior_gaussian_write_auxiliary (defined in <a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a>)</td><td class="entry"><a class="el" href="structprior__gaussian_1_1prior__gaussian__class.html">prior_gaussian::prior_gaussian_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a prior_guassian signal.  
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_pi</b>=&gt; siesta_get_gp_ne_pi (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_pp</b>=&gt; siesta_get_gp_ne_pp (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem</b>=&gt; get_gp_sxrem_ij, get_gp_sxrem_pi, get_gp_sxrem_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_ij</b>=&gt; vmec_get_gp_sxrem_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_num_hyper_param</b>=&gt; vmec_get_gp_sxrem_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_pi</b>=&gt; siesta_get_gp_sxrem_pi (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_pp</b>=&gt; siesta_get_gp_sxrem_pp (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te</b>=&gt; get_gp_te_ij, get_gp_te_pi, get_gp_te_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_ij</b>=&gt; vmec_get_gp_te_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_num_hyper_param</b>=&gt; vmec_get_gp_te_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_pi</b>=&gt; siesta_get_gp_te_pi (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_pp</b>=&gt; siesta_get_gp_te_pp (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti</b>=&gt; get_gp_ti_ij, get_gp_ti_pi, get_gp_ti_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_ij</b>=&gt; vmec_get_gp_ti_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_num_hyper_param</b>=&gt; vmec_get_gp_ti_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_pi</b>=&gt; siesta_get_gp_ti_pi (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_pp</b>=&gt; siesta_get_gp_ti_pp (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_size</b>=&gt; siesta_get_grid_size (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_start</b>=&gt; vmec_get_grid_start (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_stop</b>=&gt; vmec_get_grid_stop (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_int_b_dphi</b>=&gt; siesta_get_int_b_dphi (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_int_b_plasma</b>=&gt; siesta_get_int_b_plasma (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jphigrid</b>=&gt; vmec_get_magnetic_volume_jphigrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_jrgrid</b>=&gt; vmec_get_magnetic_volume_jrgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jzgrid</b>=&gt; vmec_get_magnetic_volume_jzgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_rgrid</b>=&gt; vmec_get_magnetic_volume_rgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_zgrid</b>=&gt; vmec_get_magnetic_volume_zgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne</b>=&gt; get_ne_cart, get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_af</b>=&gt; vmec_get_ne_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_cart</b>=&gt; siesta_get_ne_cart (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_radial</b>=&gt; siesta_get_ne_radial (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p</b>=&gt; get_p_cart, get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p_cart</b>=&gt; siesta_get_p_cart (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p_flux</b>=&gt; siesta_get_p_flux (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p_radial</b>=&gt; siesta_get_p_radial (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_id</b>=&gt; siesta_get_param_id (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_name</b>=&gt; siesta_get_param_name (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_value</b>=&gt; siesta_get_param_value (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_plasma_edge</b>=&gt; siesta_get_plasma_edge (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_s</b>=&gt; vmec_get_s (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_suv</b>=&gt; siesta_get_suv (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem</b>=&gt; get_sxrem_cart, get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_af</b>=&gt; vmec_get_sxrem_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_cart</b>=&gt; siesta_get_sxrem_cart (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_radial</b>=&gt; siesta_get_sxrem_radial (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te</b>=&gt; get_te_cart, get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_af</b>=&gt; vmec_get_te_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_cart</b>=&gt; siesta_get_te_cart (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_radial</b>=&gt; siesta_get_te_radial (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti</b>=&gt; get_ti_cart, get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_af</b>=&gt; vmec_get_ti_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_cart</b>=&gt; siesta_get_ti_cart (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_radial</b>=&gt; siesta_get_ti_radial (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_type</b>=&gt; siesta_get_type (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_volume_int_element</b>=&gt; vmec_get_volume_int_element (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_1d_array</b>=&gt; siesta_is_1d_array (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_2d_array</b>=&gt; vmec_is_2d_array (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_recon_param</b>=&gt; siesta_is_recon_param\ (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_scaler_value</b>=&gt; vmec_is_scaler_value (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_using_point</b>=&gt; vmec_is_using_point (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a3e3ae3c5cf36703625154e29ad38ce60">magnetic_cache</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a584aeb71ce1f5967bcfccdf438abda18">ne</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a8ac0d4c83e989c6937735e05cbd01ff6">ns_index</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a713a315e222accda5ce7ede256a2f557">phi_offset</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ac003aa814fa611fa4e3fcad0f1500fed">pol_rad_ratio</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>read_vac_file</b>=&gt; vmec_read_vac_file (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>reset_state</b>=&gt; siesta_reset_state (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>restart</b>=&gt; vmec_restart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#a13072e00583bf4a02054abb0ffd4136f">restart_file_name</a></td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_state</b>=&gt; siesta_save_state (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache</b>=&gt; set_magnetic_cache_response, set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_calc</b>=&gt; siesta_set_magnetic_cache_calc (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache_point</b>=&gt; siesta_set_magnetic_cache_point (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_response</b>=&gt; siesta_set_magnetic_cache_response (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_namelist</b>=&gt; vmec_set_namelist (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_param</b>=&gt; siesta_set_param (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#a7900cb5480d226474d0bde934d0775b7">siesta_construct</a>(file_name, restart_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, vmec_namelist, wout_file_name, force_solve)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>siesta_destruct</b> (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#ae19c1b20b25402d8bc6ccee2a71cc487">siesta_file_name</a></td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34">sxrem</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; siesta_sync_child (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_state</b>=&gt; siesta_sync_state (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0dfd08d4f237fae503c7b27513cfee02">te</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a82d2d9bfc3da51b9af56dec9d6019eac">ti</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a7afdd9567d8677511fa81dc84f2ab055">vmec_construct</a>(file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0317c9ff99c7700394dc03a47d709797">vmec_context_save</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>vmec_destruct</b> (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ad7acdbbcea1727c6d76e99b70aeb0b04">vmec_file_name</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a31929fb764bd503d781f77983a407797">wout_file_name</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; siesta_write (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_init_data</b>=&gt; vmec_write_init_data (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_input</b>=&gt; siesta_write_input (defined in <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a>)</td><td class="entry"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_equilibrium::siesta_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_step_data</b>=&gt; vmec_write_step_data (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a5d271bc12f77cee3d936c67e06679bc0">z_offset</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
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-<tr class="memitem:a7900cb5480d226474d0bde934d0775b7"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#a7900cb5480d226474d0bde934d0775b7">siesta_construct</a> (file_name, <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html#a13072e00583bf4a02054abb0ffd4136f">restart_file_name</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a584aeb71ce1f5967bcfccdf438abda18">ne</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0dfd08d4f237fae503c7b27513cfee02">te</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a82d2d9bfc3da51b9af56dec9d6019eac">ti</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34">sxrem</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a713a315e222accda5ce7ede256a2f557">phi_offset</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a5d271bc12f77cee3d936c67e06679bc0">z_offset</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ac003aa814fa611fa4e3fcad0f1500fed">pol_rad_ratio</a>, iou, eq_comm, recon_comm, state_flags, vmec_namelist, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a31929fb764bd503d781f77983a407797">wout_file_name</a>, <a class="el" href="structequilibrium_1_1equilibrium__class.html#acda058731cbf9b3deeba5058de328519">force_solve</a>)</td></tr>
-<tr class="memdesc:a7900cb5480d226474d0bde934d0775b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structsiesta__equilibrium_1_1siesta__class.html">siesta_class</a> object.  <a href="structsiesta__equilibrium_1_1siesta__class.html#a7900cb5480d226474d0bde934d0775b7">More...</a><br /></td></tr>
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-<tr class="inherit_header pub_methods_structvmec__equilibrium_1_1vmec__class"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_structvmec__equilibrium_1_1vmec__class')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-    <tr><td class="paramdir">[in]</td><td class="paramname">te</td><td>pprofile_T for the electron temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">ti</td><td>pprofile_T for the ion temperature. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">sxrem</td><td>pprofile_T for the soft x-ray emissivity. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">phi_offset</td><td>Initial phi offset of the plasma relative to the diagnostics in radians. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_offset</td><td>Initial Z offset of the plasma relative to the machine center. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">iou</td><td>Input/output unit to log messages to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">eq_comm</td><td>MPI communicator pool for SIESTA. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">recon_comm</td><td>MPI communicator pool for reconstruction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">vmec</td><td>An instance of a <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a> object. </td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html#a10736dcc182478e390404b2773b46c74">control_state</a></td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>converge</b>=&gt; siesta_run_converge (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set</b>=&gt; set_1d (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_1d</b>=&gt; siesta_run_set_1d (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_restart</b>=&gt; siesta_run_set_restart (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_vmec</b>=&gt; set_vmec_, set_vmec_temp (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_vmec_</b>=&gt; siesta_run_set_vmec (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_vmec_temp</b>=&gt; siesta_run_set_vmec_temp (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html#a81af6a398e7e503b2dda2c6bb798c6a4">siesta_run_construct</a>(run_comm, verbose, init_mpi, close_w</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>siesta_run_destruct</b> (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync</b>=&gt; siesta_run_sync (defined in <a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a>)</td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html#aebcb77698125edcb8097900b602a3189">time_on</a></td><td class="entry"><a class="el" href="structsiesta__run_1_1siesta__run__class.html">siesta_run::siesta_run_class</a></td><td class="entry"></td></tr>
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-PROCEDURE&#160;</td><td class="memItemRight" valign="bottom"><b>converge</b> =&gt; <a class="el" href="namespacesiesta__run.html#a34192c15f6cda422bdf260056fee9ddb">siesta_run_converge</a></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<div class="title">signal::signal_class Type Reference</div>  </div>
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-<p>Base class representing a signal.  
- <a href="structsignal_1_1signal__class.html#details">More...</a></p>
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-Inheritance diagram for signal::signal_class:</div>
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-<p>Base class containing a parsed surface_commandline.  
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-<tr class="memitem:ab7ab938e41f4b5edae2228b010b35fad"><td class="memItemLeft" align="right" valign="top">class(<a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html">surface_commandline_parser_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structsurface__commandline__parser_1_1surface__commandline__parser__class.html#ab7ab938e41f4b5edae2228b010b35fad">surface_commandline_parser_construct</a> (parallel)</td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; signal_sync_child (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a soft x-ray emissivity signal.  
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_i</b>=&gt; sxrem_ti_get_gp_i (defined in <a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem::sxrem_ti_class</a>)</td><td class="entry"><a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem::sxrem_ti_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_s</b>=&gt; sxrem_ti_get_gp_s (defined in <a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem::sxrem_ti_class</a>)</td><td class="entry"><a class="el" href="structsxrem_1_1sxrem__ti__class.html">sxrem::sxrem_ti_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_header</b>=&gt; signal_get_header (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sxrem_destruct</b> (defined in <a class="el" href="structsxrem_1_1sxrem__class.html">sxrem::sxrem_class</a>)</td><td class="entry"><a class="el" href="structsxrem_1_1sxrem__class.html">sxrem::sxrem_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; signal_sync_child (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a7888c74513301e4bc98fad7eb6f78384">units</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>thomson_destruct</b> (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sigma2</b>=&gt; signal_get_sigma2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_type</b>=&gt; thomson_get_type (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
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-  <tr><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a10a2ce7dcc4fa80ba85d732c2b41336f">observed_sigma</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>signal_destruct</b> (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>thomson_destruct</b> (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structthomson_1_1thomson__ne__class.html#a432325b8d88db4b88f2a7398da9ba3e4">thomson_ne_construct</a>(xcart)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__ne__class.html">thomson::thomson_ne_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a7888c74513301e4bc98fad7eb6f78384">units</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a thomson scattering te signal.  
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-<li class="navelem"><a class="el" href="namespacethomson.html">thomson</a></li><li class="navelem"><a class="el" href="structthomson_1_1thomson__p__class.html">thomson_p_class</a></li>  </ul>
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-<div class="title">thomson::thomson_p_class Member List</div>  </div>
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-<p>This is the complete list of members for <a class="el" href="structthomson_1_1thomson__p__class.html">thomson::thomson_p_class</a>, including all inherited members.</p>
-<table class="directory">
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_i</b>=&gt; signal_get_gp_i (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_s</b>=&gt; signal_get_gp_s (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_x</b>=&gt; signal_get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_header</b>=&gt; signal_get_header (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_last</b>=&gt; thomson_p_get_modeled_signal (defined in <a class="el" href="structthomson_1_1thomson__p__class.html">thomson::thomson_p_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__p__class.html">thomson::thomson_p_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sigma2</b>=&gt; signal_get_sigma2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_type</b>=&gt; thomson_get_type (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#aa5950221a08dd382a96b139e4ddafb32">observed</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; signal_sync_child (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>thomson_destruct</b> (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structthomson_1_1thomson__p__class.html#a57e71f7419a08c35c854bed968077622">thomson_p_construct</a>(xcart)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__p__class.html">thomson::thomson_p_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structsignal_1_1signal__class.html#a7888c74513301e4bc98fad7eb6f78384">units</a></td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_header</b>=&gt; signal_write_header (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_step_data</b>=&gt; signal_write_step_data (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<p>Base class representing a thomson scattering te signal.  
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-<table class="directory">
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_e</b>=&gt; signal_get_e (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_g2</b>=&gt; signal_get_g2 (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp</b>=&gt; get_gp_i, get_gp_s, get_gp_x (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_i</b>=&gt; thomson_te_get_gp_i (defined in <a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_s</b>=&gt; signal_get_gp_s (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_x</b>=&gt; thomson_te_get_gp_x (defined in <a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal</b>=&gt; get_modeled_signal_cache, get_modeled_signal_last (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_modeled_signal_cache</b>=&gt; signal_get_modeled_signal_cache (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_modeled_signal_last</b>=&gt; thomson_te_get_modeled_signal (defined in <a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__te__class.html">thomson::thomson_te_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_observed_signal</b>=&gt; signal_get_observed_signal (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>thomson_destruct</b> (defined in <a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a>)</td><td class="entry"><a class="el" href="structthomson_1_1thomson__class.html">thomson::thomson_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; signal_write (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_auxiliary</b>=&gt; signals_write_auxiliary (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_header</b>=&gt; signal_write_header (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_step_data</b>=&gt; signal_write_step_data (defined in <a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a>)</td><td class="entry"><a class="el" href="structsignal_1_1signal__class.html">signal::signal_class</a></td><td class="entry"></td></tr>
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-<tr class="memitem:af5b7d52e180c49aa96b39f543b5f36f4"><td class="memItemLeft" align="right" valign="top"><a id="af5b7d52e180c49aa96b39f543b5f36f4"></a>
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-<tr class="memdesc:af5b7d52e180c49aa96b39f543b5f36f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">B field in the Phi direction. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Base class representing a unprimed grid. This is grid the volume integral will be summed over. </p>
-<p>Interface to constructors. </p>
-</div><h2 class="groupheader">Member Function/Subroutine Documentation</h2>
-<a id="abe7dc5b1f7ff3b0e5578350c2291ee99"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#abe7dc5b1f7ff3b0e5578350c2291ee99">&#9670;&nbsp;</a></span>unprimed_grid_construct_a()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_class::unprimed_grid_construct_a </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>r_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), dimension(:,:,:), intent(in)&#160;</td>
-          <td class="paramname"><em>z_grid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">real (rprec), intent(in)&#160;</td>
-          <td class="paramname"><em>dphi</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
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-          <td></td>
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-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object at specfied points. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. The primed grid is supplied as arbitrary r and z positions with a uniformly spaced phi grid. Since the primed grid is arbitrary, this function does not compute the magnetic field components. The middle index represents phi positions.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">r_grid</td><td>3D Array of r positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">z_grid</td><td>3D Array of z positions. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">dphi</td><td>Phi grid spacing. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a56682ef18522a761c80cc85604bdc53d">&#9670;&nbsp;</a></span>unprimed_grid_construct_c()</h2>
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-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_class::unprimed_grid_construct_c </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>mgrid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>pgrid_vac</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
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-        </tr>
-        <tr>
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-
-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. Magnetic field components are provided on a truncated grid. Due to the central differencing, field componetents cannot be provided for first and last points on the r and z grids.</p>
-<p>This version removes vacuum current contribuitons.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid_vac</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object for the vacuum correction. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_start</td><td>Starting phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_end</td><td>Ending phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
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-<h2 class="memtitle"><span class="permalink"><a href="#a246ea95f4c1a9c6756aa2514a964f96f">&#9670;&nbsp;</a></span>unprimed_grid_construct_m()</h2>
-
-<div class="memitem">
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-      <table class="memname">
-        <tr>
-          <td class="memname">class (<a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a>) function, pointer unprimed_grid::unprimed_grid_class::unprimed_grid_construct_m </td>
-          <td>(</td>
-          <td class="paramtype">class (<a class="el" href="structm__grid_1_1m__grid__class.html">m_grid_class</a>), intent(in)&#160;</td>
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-          <td class="paramname"><em>pgrid</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_start</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(in)&#160;</td>
-          <td class="paramname"><em>p_end</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">class (<a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context_class</a>), intent(in)&#160;</td>
-          <td class="paramname"><em>parallel</em>, </td>
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-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
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-
-<p>Construct a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </p>
-<p>Allocates memory and initializes a <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. This computes the vector potential, magnetic field and positions on the unprimed grid. Magnetic field components are provided on a truncated grid. Due to the central differencing, field componetents cannot be provided for first and last points on the r and z grids.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">mgrid</td><td>A <a class="el" href="structm__grid_1_1m__grid__class.html">m_grid::m_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">pgrid</td><td>A <a class="el" href="structprimed__grid_1_1primed__grid__class.html">primed_grid::primed_grid_class</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_start</td><td>Starting phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">p_end</td><td>Ending phi index to compute fields to. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">parallel</td><td><a class="el" href="structbmw__parallel__context_1_1bmw__parallel__context__class.html">bmw_parallel_context::bmw_parallel_context_class</a> object instance. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">io_unit</td><td>Unit number to write messages to. </td></tr>
-  </table>
-  </dd>
-</dl>
-<dl class="section return"><dt>Returns</dt><dd>A pointer to a constructed <a class="el" href="structunprimed__grid_1_1unprimed__grid__class.html">unprimed_grid_class</a> object. </dd></dl>
-
-</div>
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-<hr/>The documentation for this interface was generated from the following file:<ul>
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-<p>Class to hold variables needed when a parameter is a locking parameter. The locking parameter coefficents are stored in the correlation array of the parent type.  
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-<p>Pointer to a parameter object. Used for creating arrays of signal pointers. This is needed because fortran does not allow arrays of pointers directly.  
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-<p>Class to hold variables needed when a parameter is a reconstruction parameter.  
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-<div class="header">
-  <div class="summary">
-<a href="#pub-attribs">Public Attributes</a> &#124;
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_ij</b>=&gt; equilibrium_get_gp_ti_ij (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_num_hyper_param</b>=&gt; equilibrium_get_gp_ti_num_hyper_param (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_pi</b>=&gt; equilibrium_get_gp_ti_pi (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_pp</b>=&gt; equilibrium_get_gp_ti_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_size</b>=&gt; equilibrium_get_grid_size (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_start</b>=&gt; equilibrium_get_grid_start (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_stop</b>=&gt; equilibrium_get_grid_stop (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_int_b_dphi</b>=&gt; vacuum_get_int_b_dphi (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_jphigrid</b>=&gt; equilibrium_get_magnetic_volume_jphigrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jrgrid</b>=&gt; equilibrium_get_magnetic_volume_jrgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_jzgrid</b>=&gt; equilibrium_get_magnetic_volume_jzgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_rgrid</b>=&gt; equilibrium_get_magnetic_volume_rgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_zgrid</b>=&gt; equilibrium_get_magnetic_volume_zgrid (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne</b>=&gt; get_ne_cart, get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_af</b>=&gt; equilibrium_get_ne_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_cart</b>=&gt; equilibrium_get_ne_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_radial</b>=&gt; equilibrium_get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p</b>=&gt; get_p_cart, get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p_cart</b>=&gt; equilibrium_get_p_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p_radial</b>=&gt; equilibrium_get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_id</b>=&gt; vacuum_get_param_id (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_name</b>=&gt; vacuum_get_param_name (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_value</b>=&gt; vacuum_get_param_value (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_plasma_edge</b>=&gt; equilibrium_get_plasma_edge (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem</b>=&gt; get_sxrem_cart, get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_af</b>=&gt; equilibrium_get_sxrem_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_cart</b>=&gt; equilibrium_get_sxrem_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_radial</b>=&gt; equilibrium_get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te</b>=&gt; get_te_cart, get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_af</b>=&gt; equilibrium_get_te_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_cart</b>=&gt; equilibrium_get_te_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_radial</b>=&gt; equilibrium_get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti</b>=&gt; get_ti_cart, get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_af</b>=&gt; equilibrium_get_ti_af (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_cart</b>=&gt; equilibrium_get_ti_cart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_radial</b>=&gt; equilibrium_get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_type</b>=&gt; vacuum_get_type (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_volume_int_element</b>=&gt; equilibrium_get_volume_int_element (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_1d_array</b>=&gt; vacuum_is_1d_array (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_2d_array</b>=&gt; equilibrium_is_2d_array (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_recon_param</b>=&gt; vacuum_is_recon_param (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_scaler_value</b>=&gt; equilibrium_is_scaler_value (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_using_point</b>=&gt; equilibrium_is_using_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_vac_file</b>=&gt; equilibrium_read_vac_file (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_state</b>=&gt; equilibrium_reset_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>restart</b>=&gt; equilibrium_restart (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_state</b>=&gt; equilibrium_save_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache</b>=&gt; set_magnetic_cache_response, set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_point</b>=&gt; equilibrium_set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache_response</b>=&gt; equilibrium_set_magnetic_cache_response (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_param</b>=&gt; vacuum_set_param (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_child</b>=&gt; equilibrium_sync_child (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_state</b>=&gt; equilibrium_sync_state (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html#a6f4d1d1ca3be0fb900f9f1406529920f">vacuum_construct</a>(file_name, iou, force_solve)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>vacuum_destruct</b> (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html#a21e0272ac3b5dcdf9a58da16f4dedaf0">vacuum_file_name</a></td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write</b>=&gt; vacuum_write (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_init_data</b>=&gt; equilibrium_write_init_data (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_input</b>=&gt; vacuum_write_input (defined in <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a>)</td><td class="entry"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_step_data</b>=&gt; equilibrium_write_step_data (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
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-<a href="#pub-methods">Public Member Functions</a> &#124;
-<a href="#pub-attribs">Public Attributes</a> &#124;
-<a href="structvacuum__equilibrium_1_1vacuum__class-members.html">List of all members</a>  </div>
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-<div class="title">vacuum_equilibrium::vacuum_class Interface Reference</div>  </div>
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-<p>Base class representing a <a class="el" href="namespacevacuum__equilibrium.html" title="Defines the base class of the type vacuum_class. This module contains all the code necessary to inter...">vacuum_equilibrium</a>.  
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-<div class="title">vmec_equilibrium::vmec_class Member List</div>  </div>
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-<p>This is the complete list of members for <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>, including all inherited members.</p>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>converge</b>=&gt; vmec_converge (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>def_result</b>=&gt; vmec_def_result (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_area_int_element</b>=&gt; vmec_get_area_int_element (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_b_vac</b>=&gt; vmec_get_b_vac (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_b_vec</b>=&gt; vmec_get_b_vec (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_con_surface_kphigrid</b>=&gt; vmec_get_con_surface_kphigrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_con_surface_krgrid</b>=&gt; vmec_get_con_surface_krgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_con_surface_kzgrid</b>=&gt; vmec_get_con_surface_kzgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ext_b_plasma</b>=&gt; vmec_get_ext_b_plasma (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ne_pi</b>=&gt; vmec_get_gp_ne_pi (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ne_pp</b>=&gt; vmec_get_gp_ne_pp (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem</b>=&gt; get_gp_sxrem_ij, get_gp_sxrem_pi, get_gp_sxrem_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_ij</b>=&gt; vmec_get_gp_sxrem_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_num_hyper_param</b>=&gt; vmec_get_gp_sxrem_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_sxrem_pi</b>=&gt; vmec_get_gp_sxrem_pi (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_sxrem_pp</b>=&gt; vmec_get_gp_sxrem_pp (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te</b>=&gt; get_gp_te_ij, get_gp_te_pi, get_gp_te_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_ij</b>=&gt; vmec_get_gp_te_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_num_hyper_param</b>=&gt; vmec_get_gp_te_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_te_pi</b>=&gt; vmec_get_gp_te_pi (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_te_pp</b>=&gt; vmec_get_gp_te_pp (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti</b>=&gt; get_gp_ti_ij, get_gp_ti_pi, get_gp_ti_pp (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_ij</b>=&gt; vmec_get_gp_ti_ij (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_num_hyper_param</b>=&gt; vmec_get_gp_ti_num_hyper_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_gp_ti_pi</b>=&gt; vmec_get_gp_ti_pi (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_gp_ti_pp</b>=&gt; vmec_get_gp_ti_pp (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_size</b>=&gt; vmec_get_grid_size (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_grid_start</b>=&gt; vmec_get_grid_start (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_grid_stop</b>=&gt; vmec_get_grid_stop (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_int_b_dphi</b>=&gt; vmec_get_int_b_dphi (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jphigrid</b>=&gt; vmec_get_magnetic_volume_jphigrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_jrgrid</b>=&gt; vmec_get_magnetic_volume_jrgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_jzgrid</b>=&gt; vmec_get_magnetic_volume_jzgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_magnetic_volume_rgrid</b>=&gt; vmec_get_magnetic_volume_rgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_magnetic_volume_zgrid</b>=&gt; vmec_get_magnetic_volume_zgrid (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne</b>=&gt; get_ne_cart, get_ne_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_af</b>=&gt; vmec_get_ne_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ne_cart</b>=&gt; vmec_get_ne_cart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ne_radial</b>=&gt; vmec_get_ne_radial (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p</b>=&gt; get_p_cart, get_p_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_p_cart</b>=&gt; vmec_get_p_cart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_p_radial</b>=&gt; vmec_get_p_radial (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_id</b>=&gt; vmec_get_param_id (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_param_name</b>=&gt; vmec_get_param_name (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_param_value</b>=&gt; vmec_get_param_value (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_plasma_edge</b>=&gt; vmec_get_plasma_edge (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_s</b>=&gt; vmec_get_s (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_suv</b>=&gt; vmec_get_suv (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem</b>=&gt; get_sxrem_cart, get_sxrem_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_af</b>=&gt; vmec_get_sxrem_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_sxrem_cart</b>=&gt; vmec_get_sxrem_cart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_sxrem_radial</b>=&gt; vmec_get_sxrem_radial (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te</b>=&gt; get_te_cart, get_te_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_af</b>=&gt; vmec_get_te_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_te_cart</b>=&gt; vmec_get_te_cart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_te_radial</b>=&gt; vmec_get_te_radial (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti</b>=&gt; get_ti_cart, get_ti_radial (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_af</b>=&gt; vmec_get_ti_af (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_ti_cart</b>=&gt; vmec_get_ti_cart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_ti_radial</b>=&gt; vmec_get_ti_radial (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_type</b>=&gt; vmec_get_type (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_volume_int_element</b>=&gt; vmec_get_volume_int_element (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_1d_array</b>=&gt; vmec_is_1d_array (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_2d_array</b>=&gt; vmec_is_2d_array (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_recon_param</b>=&gt; vmec_is_recon_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>is_scaler_value</b>=&gt; vmec_is_scaler_value (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>is_using_point</b>=&gt; vmec_is_using_point (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a3e3ae3c5cf36703625154e29ad38ce60">magnetic_cache</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a584aeb71ce1f5967bcfccdf438abda18">ne</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a8ac0d4c83e989c6937735e05cbd01ff6">ns_index</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a713a315e222accda5ce7ede256a2f557">phi_offset</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ac003aa814fa611fa4e3fcad0f1500fed">pol_rad_ratio</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>read_vac_file</b>=&gt; vmec_read_vac_file (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>reset_state</b>=&gt; vmec_reset_state (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>restart</b>=&gt; vmec_restart (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>save_state</b>=&gt; vmec_save_state (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache</b>=&gt; set_magnetic_cache_response, set_magnetic_cache_point (defined in <a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a>)</td><td class="entry"><a class="el" href="structequilibrium_1_1equilibrium__class.html">equilibrium::equilibrium_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_calc</b>=&gt; vmec_set_magnetic_cache_calc (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_magnetic_cache_point</b>=&gt; vmec_set_magnetic_cache_point (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_magnetic_cache_response</b>=&gt; vmec_set_magnetic_cache_response (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>set_namelist</b>=&gt; vmec_set_namelist (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>set_param</b>=&gt; vmec_set_param (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34">sxrem</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>sync_child</b>=&gt; vmec_sync_child (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>sync_state</b>=&gt; vmec_sync_state (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0dfd08d4f237fae503c7b27513cfee02">te</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a82d2d9bfc3da51b9af56dec9d6019eac">ti</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a7afdd9567d8677511fa81dc84f2ab055">vmec_construct</a>(file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0317c9ff99c7700394dc03a47d709797">vmec_context_save</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>vmec_destruct</b> (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ad7acdbbcea1727c6d76e99b70aeb0b04">vmec_file_name</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a31929fb764bd503d781f77983a407797">wout_file_name</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write</b>=&gt; vmec_write (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_init_data</b>=&gt; vmec_write_init_data (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>write_input</b>=&gt; vmec_write_input (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>write_step_data</b>=&gt; vmec_write_step_data (defined in <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a>)</td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
-  <tr><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a5d271bc12f77cee3d936c67e06679bc0">z_offset</a></td><td class="entry"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_equilibrium::vmec_class</a></td><td class="entry"></td></tr>
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-<tr class="memitem:a7afdd9567d8677511fa81dc84f2ab055"><td class="memItemLeft" align="right" valign="top">type(<a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a7afdd9567d8677511fa81dc84f2ab055">vmec_construct</a> (file_name, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a31929fb764bd503d781f77983a407797">wout_file_name</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a584aeb71ce1f5967bcfccdf438abda18">ne</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a0dfd08d4f237fae503c7b27513cfee02">te</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a82d2d9bfc3da51b9af56dec9d6019eac">ti</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34">sxrem</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a713a315e222accda5ce7ede256a2f557">phi_offset</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a5d271bc12f77cee3d936c67e06679bc0">z_offset</a>, <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#ac003aa814fa611fa4e3fcad0f1500fed">pol_rad_ratio</a>, iou, eq_comm, recon_comm, state_flags, <a class="el" href="structequilibrium_1_1equilibrium__class.html#acda058731cbf9b3deeba5058de328519">force_solve</a>)</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-<a href="#pub-attribs">Public Attributes</a> &#124;
-<a href="structvmec__equilibrium_1_1vmec__magnetic__cache-members.html">List of all members</a>  </div>
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-<div class="title">vmec_equilibrium::vmec_magnetic_cache Type Reference</div>  </div>
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-<p>Object to cache data needed to compute magnetic signals.  
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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-<div class="title">vmec_file::vmec_file_class Member List</div>  </div>
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-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bsupumnch</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bsupumnsh</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>bsupvmnch</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>bsupvmnsh</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>extcur</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>isigng</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>jksupumncf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>jksupumnsf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>jksupvmncf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>jksupvmnsf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>lasym</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>mnmax</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
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-  <tr bgcolor="#f0f0f0"><td class="entry"><b>presf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
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-  <tr class="even"><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html#a27bd57e4216c7ae8d5cc3fb2a8a048ae">vmec_file_construct</a>(vmec_file_name)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>vmec_file_destruct</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>xm</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>xm_nyq</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>xn</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0"><td class="entry"><b>xn_nyq</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>zmncf</b> (defined in <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a>)</td><td class="entry"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td><td class="entry"></td></tr>
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-<li class="navelem"><a class="el" href="dir_c56891cdec73a15790d380939a7a6e34.html">V3FIT</a></li><li class="navelem"><a class="el" href="dir_9685e927764a102f62dca2400b4ec5d4.html">Sources</a></li>  </ul>
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-<a href="#nested-classes">Data Types</a> &#124;
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-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">sxrem.f File Reference</div>  </div>
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-
-<p>Contains module <a class="el" href="namespacesxrem.html">sxrem</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a0f725023edd776ab35b1d69a75f77d88"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a7951a757a028449cccdc36353c29715b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3504d2727f12e9edcc8589f775e81aac"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a06ff81f3a17713d6e579a7ab928f40f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2d6df79edd9ff1537a1e94f4e4b0d442"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2afcf039fae9ddf05156f09a39a34d2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<p>Contains module <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>.  
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-<div class="textblock"><p>Contains module <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>. </p>
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-<p>Contains module <a class="el" href="namespacesxrem__ratio__dot.html">sxrem_ratio_dot</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ad759c01e4c13062892dd26b649ce2b64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Read an sxrem ratio dot file.  <a href="namespacesxrem__ratio__dot.html#ad759c01e4c13062892dd26b649ce2b64">More...</a><br /></td></tr>
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-<tr class="memdesc:af8bab8b0e2f8f538b13b74531db89560"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse soft x-ray ratio point.  <a href="namespacesxrem__ratio__dot.html#af8bab8b0e2f8f538b13b74531db89560">More...</a><br /></td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespacesxrem__ratio__dot.html">sxrem_ratio_dot</a>. </p>
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-<ul><li class="level1"><a href="#sxrem_dot_intro_sec">Introduction</a></li>
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-Introduction</h1>
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-<p>This document contains information about the soft x-ray chord specifications. Chords are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#a72d9b20480f9377f4ebc813caa9c4fda">v3fit_input::sxrch_dot_filename</a> variable of the name list input file. Chords are specified as two verticies in either meters or radians.</p>
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-Keywords</h1>
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-<td width="30%"><code>sxr_chord_XYZ</code></td><td width="70%">A soft x-ray chord specified in Cartesian coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_RPhiDegZ</code></td><td width="70%">A soft x-ray chord specified in Cylindrical coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_XYZ_geo</code></td><td width="70%">A soft x-ray chord specified in Cartesian coordinates with the geometric factor. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_RPhiDegZ_geo</code></td><td width="70%">A soft x-ray chord specified in Cylindrical coordinates with the geometric factor. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_XYZ_xics_emiss</code></td><td width="70%">A XICS emission chord specified in Cartesian coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_RPhiDegZ_xics_emiss</code></td><td width="70%">A XICS emission chord specified in Cylindrical coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_XYZ_xics_ti</code></td><td width="70%">A XICS electron temperature chord specified in Cartesian coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_chord_RPhiDegZ_xics_ti</code></td><td width="70%">A XICS electron temperature chord specified in Cylindrical coordinates. </td></tr>
-<tr>
-<td width="30%"><code>sxr_new_profile</code></td><td width="70%">Mark the start of chords that begin the next profile. </td></tr>
-</table>
-<h1><a class="anchor" id="sxrem_dot_chord_spec_sec"></a>
-Chord Specification</h1>
-<p>All soft x-ray chords are specified in the following manner.</p>
-<p><code>key_word<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>x2(REAL) y2(REAL) z2(REAL)<br  />
-</code></p>
-<p>Keywords that end with _geo, contain an extra geomtric factor.</p>
-<p><code>key_word_geo<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>x2(REAL) y2(REAL) z2(REAL)<br  />
-</code> <code>geo(REAL)<br  />
-</code></p>
-<h1><a class="anchor" id="sxrem_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  A soft x-ray chord specified in Cartesian coordinates.</span></div>
-<div class="line">sxr_chord_xyz</div>
-<div class="line">sxr001</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A soft x-ray chord specified in Cylindrical coordinates.</span></div>
-<div class="line">sxr_chord_rphidegz</div>
-<div class="line">sxr002</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h2><a class="anchor" id="sxrem_dot_exam_two_color_sec"></a>
-Two Color Example File</h2>
-<div class="fragment"><div class="line"><span class="comment">!  A soft x-ray chord specified in Cartesian coordinates.</span></div>
-<div class="line">sxr_chord_xyz</div>
-<div class="line">sxr001</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line">sxr_new_profile</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A soft x-ray chord specified in Cylindrical coordinates.</span></div>
-<div class="line">sxr_chord_rphidegz</div>
-<div class="line">sxr002</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">0.5 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h1><a class="anchor" id="sxrem_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespacesxrch__dot.html">sxrch_dot</a> modules. </p>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
-</small></address>
-</body>
-</html>
diff --git a/html/sxrem_ratio_dot_sec.html b/html/sxrem_ratio_dot_sec.html
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-  <div class="headertitle">
-<div class="title">Soft X-ray Emissivity Ratio Dot File </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#sxrem_ratio_dot_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#sxrem_ratio_dot_key_sec">Keywords</a></li>
-<li class="level1"><a href="#sxrem_ratio_dot_chord_spec_sec">Point Specification</a></li>
-<li class="level1"><a href="#sxrem_ratio_dot_exam_sec">Example File</a></li>
-<li class="level1"><a href="#sxrem_ratio_dot_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="sxrem_ratio_dot_intro_sec"></a>
-Introduction</h1>
-<p>Diagnostic dot files specify geometric and auxiliary information about each diagnostic. Parsing of a diagnostic dot file begins by searching for a valid keyword. All lines before a valid keyword is reached are ignored allowing for comments and other information to be inserted in the file. Once a keyword is reached, the parsing becomes strict. The diagnostic description format is dependant on the specific keyword. All diagnostic dot files must end with an <code>end_of_file</code> keyword.</p>
-<p>This document contains information about the sxrem ratio point specifications. Points are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">v3fit_input::sxrem_ratio_dot_filename</a> variable of the name list input file. Points are specified as a verticies in either meters or radians.</p>
-<h1><a class="anchor" id="sxrem_ratio_dot_key_sec"></a>
-Keywords</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="30%"><code>sxrem_ratio_XYZ</code></td><td width="70%">A sxrem ratio point specified in Cartesian coordinates measuring electron temperature. </td></tr>
-<tr>
-<td width="30%"><code>sxrem_ratio_RPhiDegZ</code></td><td width="70%">A sxrem ratio point specified in Cylindrical coordinates measuring electron temperature. </td></tr>
-</table>
-<h1><a class="anchor" id="sxrem_ratio_dot_chord_spec_sec"></a>
-Point Specification</h1>
-<p>All thomson scattering points are specified in the following manner. Indices a specified such that the order defines the ratio as index1/index2.</p>
-<p><code>key_word<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code> <code>index1(INTEGER index2(INTEGER)</code></p>
-<h1><a class="anchor" id="sxrem_ratio_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  A sxrem ratio point specified in Cartesian coordinates for the profile ration of indices 2/3.</span></div>
-<div class="line">sxrem_ratio_xyz</div>
-<div class="line">ratio1</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">2 3</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A sxrem ratio point specified in Cartesian coordinates for the profile ration of indices 4/1.</span></div>
-<div class="line">sxrem_ratio_rphidegz</div>
-<div class="line">ratio2</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line">4 1</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h1><a class="anchor" id="sxrem_ratio_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespacesxrem__ratio__dot.html">sxrem_ratio_dot</a> modules. </p>
-</div></div><!-- contents -->
-</div><!-- PageDoc -->
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-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<li class="level1"><a href="#testing_regression_tests">Regression Tests</a></li>
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-<p>For any large software project, testing is a critical part of the development process. Regular code testing helps ensure that code is not only correct, but remains correct as pieces change. Testing of the V3FIT code is currently implemented at two levels. The unit testing level tests components at the function and subroutine levels. This ensures code correctness. Regression tests check the results of the code against expected values. Note that tests have only been setup for the new coding. If using the old coding version of V3FIT, tests are expected to fail.</p>
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-Unit Tests</h1>
-<p>This tests are implemented at the module level. A module with unit testing capability should provide a *_test function. These tests should check each function and subroutine in the module against an analytic result. These tests are meant to test for correctness.</p>
-<p>All unit tests are run in the <a class="el" href="v3fita_8f.html#a4ebe95c4aecd9fcd05033b53c61f2620">task_unit_tests</a> subroutine. Unit testing may be run by setting the <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> variable to <code>unit_test</code> or by using the <code>-test</code> <a class="el" href="cl_parsing_sec.html">Command Line Arguments</a>.</p>
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-Regression Tests</h1>
-<p>Regression tests run the code in full and check against expected results. These tests are make up of a collective of individual tests. Regression tests are typically setup where the first test check the sucessful operation of the code (ie. no segfault, crashes, etc...). Subsequent tests check individual pieces of the results against expected results.</p>
-<p>It is not recommended to setup tests where a result file is checked against a "Good" file. These types of tests can lead to false positives due to changes in formatting of a file over the course of development or variations in code run. For instance, the recout file and runlog files contain the the execution time of V3FIT. This time will change depending a variy of factors.</p>
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-Cmake Test Framework</h1>
-<p>In the <a class="el" href="build_system.html">Stellarator-Tools Build System</a>, a task is setup in the make file to configure and run the tests. All tests can be found in the testing directory. In the testing directory there are a series of sub directories. The test_files directory contains files that are common to all tests. These files are copied to the test working directory when tests are configured. The test_utilities directory contains python scripts to test the results of files. The tests directory contains the actual tests.</p>
-<p>In the tests directory, the various sub folders are the working directories for the tests. In each directory, the CMakeLists.txt contains the tests to run. A test is added to this file using the add_test command. Each test needs a unique name and a command. The test is deamed to pass if the exit code returned is zero.</p>
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-Running Tests</h1>
-<p>Tests are run from the Cmake generated make file (see <a class="el" href="build_system.html#build_system_testing">Testing</a>) or by using the <code>ctest</code> command. Individual or ranges of tests maybe run by using the <code>ctest -R &amp;ltregex&amp;gt</code> command. As an example to run all the tests for diagnostic rotation use the command </p><div class="fragment"><div class="line">ctest -R ^diagnostic_rotation</div>
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-Test Results</h2>
-<p>Test results are immidately displayed showing the result of the number of failed tests out of the total number of tests. Once tests have completed running, a directory called Temporary in the Testing directory is created. Inside this directory is a file listing the last tests that failed and the current log file for each test. When a test fails, it is encouraged to either check the log file for the reason the test crashed or run the test manually. </p>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a thomson scattering te signal.  <a href="structthomson_1_1thomson__p__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a1cc5dc0ccb2d5b512af08205eca1e16b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object measureing temperature.  <a href="namespacethomson.html#a1cc5dc0ccb2d5b512af08205eca1e16b">More...</a><br /></td></tr>
-<tr class="separator:a1cc5dc0ccb2d5b512af08205eca1e16b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8c8b7ae3490784655862d004c75dfcfc"><td class="memItemLeft" align="right" valign="top">class(thomson_ne_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a8c8b7ae3490784655862d004c75dfcfc">thomson::thomson_ne_construct</a> (xcart)</td></tr>
-<tr class="memdesc:a8c8b7ae3490784655862d004c75dfcfc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object measureing density.  <a href="namespacethomson.html#a8c8b7ae3490784655862d004c75dfcfc">More...</a><br /></td></tr>
-<tr class="separator:a8c8b7ae3490784655862d004c75dfcfc"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ad46f3991fb572fc3bf469c7b65ab2513"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structthomson_1_1thomson__class.html">thomson_class</a> object.  <a href="namespacethomson.html#ad46f3991fb572fc3bf469c7b65ab2513">More...</a><br /></td></tr>
-<tr class="separator:ad46f3991fb572fc3bf469c7b65ab2513"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3d42a4d600168c3c53fb28a3db35a858"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a3d42a4d600168c3c53fb28a3db35a858">thomson::thomson_te_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a3d42a4d600168c3c53fb28a3db35a858"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled te signal.  <a href="namespacethomson.html#a3d42a4d600168c3c53fb28a3db35a858">More...</a><br /></td></tr>
-<tr class="separator:a3d42a4d600168c3c53fb28a3db35a858"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f5aea84ecb67cb6f085177a914ab711"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a2f5aea84ecb67cb6f085177a914ab711">thomson::thomson_ne_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
-<tr class="memdesc:a2f5aea84ecb67cb6f085177a914ab711"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the modeled ne signal.  <a href="namespacethomson.html#a2f5aea84ecb67cb6f085177a914ab711">More...</a><br /></td></tr>
-<tr class="separator:a2f5aea84ecb67cb6f085177a914ab711"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0beaae26008bb46c750e4b73cc39005c"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a0beaae26008bb46c750e4b73cc39005c">thomson::thomson_p_get_modeled_signal</a> (this, a_model, sigma, last_value)</td></tr>
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-<tr class="separator:a0beaae26008bb46c750e4b73cc39005c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c69b8158aa88dbf4bb5227044c9c4dd"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#a1c69b8158aa88dbf4bb5227044c9c4dd">thomson::thomson_get_type</a> (this)</td></tr>
-<tr class="memdesc:a1c69b8158aa88dbf4bb5227044c9c4dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the thomson type.  <a href="namespacethomson.html#a1c69b8158aa88dbf4bb5227044c9c4dd">More...</a><br /></td></tr>
-<tr class="separator:a1c69b8158aa88dbf4bb5227044c9c4dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab639ad3d6b0cae850a7226772a513860"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860">thomson::thomson_get_gp_s</a> (this, a_model, signal, flags)</td></tr>
-<tr class="memdesc:ab639ad3d6b0cae850a7226772a513860"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson signal and a signal.  <a href="namespacethomson.html#ab639ad3d6b0cae850a7226772a513860">More...</a><br /></td></tr>
-<tr class="separator:ab639ad3d6b0cae850a7226772a513860"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa100d27e0798f8cafd946b05a0fe25a6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#aa100d27e0798f8cafd946b05a0fe25a6">thomson::thomson_te_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:aa100d27e0798f8cafd946b05a0fe25a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson te signal and a position.  <a href="namespacethomson.html#aa100d27e0798f8cafd946b05a0fe25a6">More...</a><br /></td></tr>
-<tr class="separator:aa100d27e0798f8cafd946b05a0fe25a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad857caf892011a452b4550c96744c7e2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ad857caf892011a452b4550c96744c7e2">thomson::thomson_te_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:ad857caf892011a452b4550c96744c7e2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson te signal and a cartesian position.  <a href="namespacethomson.html#ad857caf892011a452b4550c96744c7e2">More...</a><br /></td></tr>
-<tr class="separator:ad857caf892011a452b4550c96744c7e2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ad9f23e91103f97fa00d8beff5e4b5ce5">thomson::thomson_ne_get_gp_i</a> (this, a_model, i, flags)</td></tr>
-<tr class="memdesc:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson ne signal and a position.  <a href="namespacethomson.html#ad9f23e91103f97fa00d8beff5e4b5ce5">More...</a><br /></td></tr>
-<tr class="separator:ad9f23e91103f97fa00d8beff5e4b5ce5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#ac75d9e1d51a15dcc51646e98b3268ca8">thomson::thomson_ne_get_gp_x</a> (this, a_model, x_cart, flags)</td></tr>
-<tr class="memdesc:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the guassian process kernel for a thomson ne signal and a cartesian position.  <a href="namespacethomson.html#ac75d9e1d51a15dcc51646e98b3268ca8">More...</a><br /></td></tr>
-<tr class="separator:ac75d9e1d51a15dcc51646e98b3268ca8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:acfc8ae82895e70907a183578f4cc576e"><td class="memItemLeft" align="right" valign="top"><a id="acfc8ae82895e70907a183578f4cc576e"></a>
-character(len= *), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacethomson.html#acfc8ae82895e70907a183578f4cc576e">thomson::thomson_p_error</a> = 'Guassian processes are not supported ' // 'for thomson pressure measurements.'</td></tr>
-<tr class="memdesc:acfc8ae82895e70907a183578f4cc576e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assert message for pressure methods. <br /></td></tr>
-<tr class="separator:acfc8ae82895e70907a183578f4cc576e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacethomson.html">thomson</a>. </p>
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-<div class="title">Thomson Scattering Diagnostic Dot File </div>  </div>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#thomson_dot_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#thomson_dot_key_sec">Keywords</a></li>
-<li class="level1"><a href="#thomson_dot_chord_spec_sec">Chord Specification</a></li>
-<li class="level1"><a href="#thomson_dot_exam_sec">Example File</a></li>
-<li class="level1"><a href="#thomson_dot_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="thomson_dot_intro_sec"></a>
-Introduction</h1>
-<p>Diagnostic dot files specify geometric and auxiliary information about each diagnostic. Parsing of a diagnostic dot file begins by searching for a valid keyword. All lines before a valid keyword is reached are ignored allowing for comments and other information to be inserted in the file. Once a keyword is reached, the parsing becomes strict. The diagnostic description format is dependant on the specific keyword. All diagnostic dot files must end with an <code>end_of_file</code> keyword.</p>
-<p>This document contains information about the thomson scattering point specifications. Points are specified in a structured text file. This file is read in by the <a class="el" href="namespacev3fit__input.html#a44c3bf45a946bb5583996a47eab2e1c7">v3fit_input::thscte_dot_filename</a> variable of the name list input file. Points are specified as a verticies in either meters or radians.</p>
-<h1><a class="anchor" id="thomson_dot_key_sec"></a>
-Keywords</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="30%"><code>thscte_XYZ</code><br  />
- <code>thscte_XYZ_te</code></td><td width="70%">A thomson scattering point specified in Cartesian coordinates measuring electron temperature. </td></tr>
-<tr>
-<td width="30%"><code>thscte_RPhiDegZ</code><br  />
- <code>thscte_RPhiDegZ_te</code></td><td width="70%">A thomson scattering point specified in Cylindrical coordinates measuring electron temperature. </td></tr>
-<tr>
-<td width="30%"><code>thscte_XYZ_ne</code></td><td width="70%">A thomson scattering point specified in Cartesian coordinates measuring electron denisty. </td></tr>
-<tr>
-<td width="30%"><code>thscte_RPhiDegZ_ne</code></td><td width="70%">A thomson scattering point specified in Cylindrical coordinates measuring electron denisty. </td></tr>
-<tr>
-<td width="30%"><code>thscte_XYZ_pres</code></td><td width="70%">A thomson scattering point specified in Cartesian coordinates measuring plasma pressure. </td></tr>
-<tr>
-<td width="30%"><code>thscte_RPhiDegZ_pres</code></td><td width="70%">A thomson scattering point specified in Cylindrical coordinates measuring plasma pressure. </td></tr>
-</table>
-<h1><a class="anchor" id="thomson_dot_chord_spec_sec"></a>
-Chord Specification</h1>
-<p>All thomson scattering points are specified in the following manner.</p>
-<p><code>key_word<br  />
-</code> <code>name(STRING len:<a class="el" href="namespacedata__parameters.html#a824296bcea77226a075b7f645cdce56c">data_parameters::data_short_name_length</a>)<br  />
-</code> <code>x1(REAL) y1(REAL) z1(REAL)<br  />
-</code></p>
-<h1><a class="anchor" id="thomson_dot_exam_sec"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">!  A thomson scattering point specified in Cartesian coordinates measuring electron temperature.</span></div>
-<div class="line">thscte_xyz_te</div>
-<div class="line">tsc001</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  A soft x-ray chord specified in Cylindrical coordinates measuring electron denisty.</span></div>
-<div class="line">thscte_rphidegz_ne</div>
-<div class="line">tsc002</div>
-<div class="line">1.0 0.0 0.0</div>
-<div class="line"> </div>
-<div class="line"><span class="comment">!  All files must end with</span></div>
-<div class="line">end_of_file</div>
-</div><!-- fragment --><h1><a class="anchor" id="thomson_dot_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to parse these files can be found in the <a class="el" href="namespacesignal__dot.html">signal_dot</a> and <a class="el" href="namespacethscte__dot.html">thscte_dot</a> modules. </p>
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<p>Contains module <a class="el" href="namespacethscte__dot.html">thscte_dot</a>.  
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-<tr class="separator:a7c177423fb3b2ea5d7a06293177280de"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ab7e0fba6bc6e693eea2930045b92124a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse thomson scattering diagnostic chord.  <a href="namespacethscte__dot.html#ab7e0fba6bc6e693eea2930045b92124a">More...</a><br /></td></tr>
-<tr class="separator:ab7e0fba6bc6e693eea2930045b92124a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespacethscte__dot.html">thscte_dot</a>. </p>
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diff --git a/html/todo.html b/html/todo.html
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-<div class="title">Todo List </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="textblock"><dl class="reflist">
-<dt>Subprogram <a class="el" href="namespaceece__dot.html#ac59e5722238eb63eed49d487c5666238">ece_dot::ece_dot_read</a>  (ece_file, signals, signals_created, observed, sigma, weight, first_index)</dt>
-<dd><a class="anchor" id="_todo000001"></a>FIXME: Remove the _new when removing the old code.  </dd>
-<dt>Subprogram <a class="el" href="namespaceequilibrium.html#a6761083f9efa93db8f53826785bce684">equilibrium::equilibrium_get_plasma_edge</a>  (this, phi, r, z)</dt>
-<dd><a class="anchor" id="_todo000002"></a>An "edge" could be defined as a the last field line that intersects a limiter for the vacuum case. By defineing a r_last parameter, a feild line can be followed around the machine. When that field line intersecs the desired phi plane, record the r and z positions. Field line following will also need to be performed for siesta.  </dd>
-<dt>Subprogram <a class="el" href="namespaceguassian__process.html#ac3d674cdda094bc99fb1d665b60be709">guassian_process::gaussp_construct</a>  (a_model, n_signals, gaussp_type, profile_index, vrnc, tolerance, cholesky_fac)</dt>
-<dd><a class="anchor" id="_todo000003"></a>FIXME: The guassian process kernels should know the correct ranges. Query those instead. For now set all to infinity.  </dd>
-<dt>Subprogram <a class="el" href="namespacemagnetic.html#adf463be6bae38afa96d325a0a0bcae5c">magnetic::magnetic_get_modeled_signal_coil</a>  (this, a_model, sigma)</dt>
-<dd><a class="anchor" id="_todo000004"></a>FIXME: For a single diagnostic these never change. Allocate these once and cache these in the <a class="el" href="structmagnetic_1_1magnetic__class.html">magnetic_class</a> object.  </dd>
-<dt>Subprogram <a class="el" href="namespacemodel.html#aba4858fbaa5f5546819d80132d41c204">model::model_construct</a>  (ne_type, sxrem_type, te_type, ti_type, ne_unit, ne_min, te_min, ti_min, sxrem_min, pressure_fraction, emission, equilibrium, sxrem_te, <a class="el" href="namespacesxrem__ratio.html" title="Defines a feedback signal based on the temperature based on the ration of the soft x-ray emissivity p...">sxrem_ratio</a>, resonace_range, coosig_wgts, state_flags, signal_factor, signal_offset, int_params)</dt>
-<dd><a class="anchor" id="_todo000005"></a>FIXME: Name here shouldn't have vmec in it  </dd>
-<dt>Page <a class="el" href="namelist_sec.html">Namelist v3fit_main_nli definition</a>  </dt>
-<dd><a class="anchor" id="_todo000009"></a>FIXME: S and U are VMEC specific. Make these a radial position and poloidal angle.  </dd>
-<dt>Subprogram <a class="el" href="namespacepprofile__t.html#aeff18f2ba94083ded9d51ea20a7e8ee3">pprofile_t::pprofile_get_value</a>  (this, s_arg)</dt>
-<dd><a class="anchor" id="_todo000006"></a>This function makes vmec specific assumptions of 1 being the maximum radial value.  </dd>
-<dt>Subprogram <a class="el" href="namespacesiesta__equilibrium.html#a5c60ae6d4eb59e160c920f2da2f605d8">siesta_equilibrium::siesta_get_plasma_edge</a>  (this, phi, r, z)</dt>
-<dd><a class="anchor" id="_todo000007"></a>FIXME: The vmec boundary won't be the case for Free boundary siesta. </dd>
-<dt>Subprogram <a class="el" href="namespacesxrch__dot.html#a1d1c61c5ce3570230efbc3dade765cba">sxrch_dot::sxrch_dot_read</a>  (sxrch_file, signals, signals_created, observed, sigma, weight, first_index)</dt>
-<dd><a class="anchor" id="_todo000008"></a>FIXME: Remove the _new when removing the old code.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">v3fit_input::extcurz_s0</a>  </dt>
-<dd><a class="anchor" id="_todo000011"></a>FIXME: The label of s0 and u0 are vmec specific. These should be changed to a radial coordinate and poloidal angle.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a3516a594cb5e51020f4aa30ef8e20aa4">v3fit_input::l_zero_xcdot</a>  </dt>
-<dd><a class="anchor" id="_todo000012"></a>FIXME: VMEC specific. Not implemented.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">v3fit_input::model_ne_type</a>  </dt>
-<dd><a class="anchor" id="_todo000010"></a>FIXME: New coding contains a model_ne_type that old code did not have. Make the default value pp_ne for compatibility. Eventially this shoud be set back to none and users should set model_ne_type in the namelist input.  </dd>
-<dt>Subprogram <a class="el" href="namespacev3fit__input.html#a3ee7923a0e8823098df46d2929d1b0ab">v3fit_input::v3fit_input_read_namelist</a>  (namelist_file)</dt>
-<dd><a class="anchor" id="_todo000013"></a>FIXME: Remove this when n_sig_coosig is mandatory.  </dd>
-<dt>Subprogram <a class="el" href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">vmec_equilibrium::vmec_converge</a>  (this, num_iter, iou, eq_comm, state_flags)</dt>
-<dd><a class="anchor" id="_todo000020"></a>FIXME: Put in error reporting here. For now leave this blank until I can figure how v3fit decides if vmec has converged.  </dd>
-<dt>Subprogram <a class="el" href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e">vmec_equilibrium::vmec_set_magnetic_cache_calc</a>  (this)</dt>
-<dd><p class="startdd"><a class="anchor" id="_todo000015"></a>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </p>
-<p class="interdd"><a class="anchor" id="_todo000016"></a>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </p>
-<p class="interdd"><a class="anchor" id="_todo000017"></a>FIXME: There is no reason to recompute the sine and cosine for the u component arrays every time. </p>
-<p class="interdd"><a class="anchor" id="_todo000018"></a>FIXME: There is no reason to recalculate the sin and cosin for the u component arrays every time. The v components can change if phi_offset is being reconstructed. The u components can be cached in the <a class="el" href="structvmec__equilibrium_1_1vmec__magnetic__cache.html">vmec_magnetic_cache</a> and calculated once in <a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_set_magnetic_cache_response</a>. </p>
-<p class="enddd"><a class="anchor" id="_todo000019"></a>FIXME: There is no reason to recompute the sine and cosine for the u component arrays every time.  </p>
-</dd>
-<dt>Subprogram <a class="el" href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc">vmec_equilibrium::vmec_set_param</a>  (this, id, i_index, j_index, value, eq_comm, state_flags)</dt>
-<dd><a class="anchor" id="_todo000014"></a>FIXME: Consider throwing a fatal error here instead of silently doing nothing. </dd>
-</dl>
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-<tr class="memdesc:af6ecd3130b163a10811c5c6ede95485a"><td class="mdescLeft">&#160;</td><td class="mdescRight">These tests run module tests embeded within specific modules. <br /></td></tr>
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-<tr class="separator:a001873e5aa19fce5d04482dde1e081bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a020ef8a2392cbc73ff8f3ffdb0ec2b24"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a4c9976c2bc582dc3d1eaa214623e4311"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:acd65733c2b544b3a4c4e593b8b45ff32"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aa8f338cb8baf6e5037a88ab897404521"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:aefb81c8bfa3087cdaad4c2617e4383df"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e6a8da8f9874f6e6fcec023e6964c2f"><td class="memItemLeft" align="right" valign="top">pure subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceutilities.html#a9e6a8da8f9874f6e6fcec023e6964c2f">utilities::set_bndy_fouier_m0</a> (amn, <a class="el" href="classparity.html">parity</a>)</td></tr>
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-<tr class="separator:a9e6a8da8f9874f6e6fcec023e6964c2f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a969bf9187692dd68e7b48a00f70f372d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a5673acaafc8662d0527dbe1b8a28b790"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a365a15cb83921febb9278a6a9b158079"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3595a7fa86d5b7714483cc9cb05ff00f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespaceperturbation.html">perturbation</a>. </p>
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-<div class="contents">
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-<p>Contains module <a class="el" href="namespacev3fit__context.html">v3fit_context</a>.  
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-<tr class="separator:a1a18a7ea156e72da552e4bc6e6a2ca67"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a397be0527ba6e7d56eacdfd2b9a04b4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:ae603bd5c6255bc5ac0c713645184a2ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to the defined variables.  <a href="namespacev3fit__context.html#ae603bd5c6255bc5ac0c713645184a2ba">More...</a><br /></td></tr>
-<tr class="separator:ae603bd5c6255bc5ac0c713645184a2ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc956ea722061536cdc2ecd478308f4d"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__context.html#afc956ea722061536cdc2ecd478308f4d">v3fit_context::v3fit_context_restart</a> (this, current_step)</td></tr>
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-<tr class="separator:afc956ea722061536cdc2ecd478308f4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacev3fit__context.html">v3fit_context</a>. </p>
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-<div class="title">v3fit_input.f File Reference</div>  </div>
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-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacev3fit__input.html">v3fit_input</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
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-<tr class="memitem:namespacev3fit__input"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html">v3fit_input</a></td></tr>
-<tr class="memdesc:namespacev3fit__input"><td class="mdescLeft">&#160;</td><td class="mdescRight">This file contains all the variables and maximum sizes of the inputs for a v3fit namelist input file. The module contained within does not represent an object instance. Instead all variables are contained in a global context. This is required due to limitations of FORTRAN 95 and namelist inputs. Any information needed by a V3FIT task should be copied to a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. All non-parameters are inputs to the namelist input file. <br /></td></tr>
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-<tr class="memdesc:a3ee7923a0e8823098df46d2929d1b0ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reads the namelist input file.  <a href="namespacev3fit__input.html#a3ee7923a0e8823098df46d2929d1b0ab">More...</a><br /></td></tr>
-<tr class="separator:a3ee7923a0e8823098df46d2929d1b0ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a3ebb1c33783f13106c703abf6927e186"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ad531a9ffbbbb3228686b5f7b8152dead"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a7d975a942827c32691153410374be732"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the namelist input file.  <a href="namespacev3fit__input.html#a7d975a942827c32691153410374be732">More...</a><br /></td></tr>
-<tr class="separator:a7d975a942827c32691153410374be732"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af4f1c90eacff29637a6703202a320052">v3fit_input::v3fit_max_diagnostics</a> = 1000</td></tr>
-<tr class="memdesc:af4f1c90eacff29637a6703202a320052"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of diagnostic signals. <br /></td></tr>
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-<tr class="memitem:a1c2d03eae11f109e405063629ea8fb47"><td class="memItemLeft" align="right" valign="top"><a id="a1c2d03eae11f109e405063629ea8fb47"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1c2d03eae11f109e405063629ea8fb47">v3fit_input::v3fit_max_limiters</a> = 1000</td></tr>
-<tr class="memdesc:a1c2d03eae11f109e405063629ea8fb47"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of geometric signals. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3a2686ac4e6aae0fb419007f710ea554">v3fit_input::v3fit_max_priors</a> = 1000</td></tr>
-<tr class="memdesc:a3a2686ac4e6aae0fb419007f710ea554"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of prior signals. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a03926d8eb38a8af365ca1072a5d2754e">v3fit_input::v3fit_max_combinations</a> = 1000</td></tr>
-<tr class="memdesc:a03926d8eb38a8af365ca1072a5d2754e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of combination signals. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa0418bf28cc1056ea0d95949d89fec71">v3fit_input::v3fit_max_signals</a> = v3fit_max_diagnostics + v3fit_max_limiters + v3fit_max_priors + v3fit_max_combinations + max_gaussprocess</td></tr>
-<tr class="memdesc:aa0418bf28cc1056ea0d95949d89fec71"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of total signals. <br /></td></tr>
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-<tr class="memitem:a17cb61871ebe20fe6f97bb2410aa179c"><td class="memItemLeft" align="right" valign="top"><a id="a17cb61871ebe20fe6f97bb2410aa179c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a17cb61871ebe20fe6f97bb2410aa179c">v3fit_input::v3fit_max_parameters</a> = 100</td></tr>
-<tr class="memdesc:a17cb61871ebe20fe6f97bb2410aa179c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:aac2c714ea366acf1f172fd2d67c46bfd"><td class="memItemLeft" align="right" valign="top">integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">v3fit_input::v3fit_max_spec_size</a> = 150</td></tr>
-<tr class="memdesc:aac2c714ea366acf1f172fd2d67c46bfd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum size of the easy specification arrays.  <a href="namespacev3fit__input.html#aac2c714ea366acf1f172fd2d67c46bfd">More...</a><br /></td></tr>
-<tr class="separator:aac2c714ea366acf1f172fd2d67c46bfd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5b72d4dae21dc072345e87ca66282992"><td class="memItemLeft" align="right" valign="top"><a id="a5b72d4dae21dc072345e87ca66282992"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5b72d4dae21dc072345e87ca66282992">v3fit_input::v3fit_max_lif_size</a> = 100</td></tr>
-<tr class="memdesc:a5b72d4dae21dc072345e87ca66282992"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of phi positions for limiters. <br /></td></tr>
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-<tr class="memdesc:ac4eb570001e79b214e4edcb24d5e971e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of signals a combination signal can refer to. <br /></td></tr>
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-<tr class="memdesc:a888aa95a3a2a2bd133199010bdbdc862"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reconstruction step name length. <br /></td></tr>
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-<tr class="memitem:ad1c31938a79add9637c1d186dfccd1ff"><td class="memItemLeft" align="right" valign="top"><a id="ad1c31938a79add9637c1d186dfccd1ff"></a>
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-<tr class="memdesc:ad1c31938a79add9637c1d186dfccd1ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for main namelist input. <a class="el" href="namelist_sec.html">Namelist v3fit_main_nli definition</a>. <br /></td></tr>
-<tr class="separator:ad1c31938a79add9637c1d186dfccd1ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aaeec2a0fe790641ebac2a03c7abd7a4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for VMEC namelist input. <br /></td></tr>
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-<tr class="memdesc:af43c8cf4a63999f530db578544ef50bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for the VMEC wout input. <br /></td></tr>
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-<tr class="memdesc:ab3d7f3dfd9add7dbc482aeb1a1a63cd5"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for a vacuum namelist input. <br /></td></tr>
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-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afb389a447b59890dce1eddceb64cce01">v3fit_input::siesta_nli_filename</a> = ''</td></tr>
-<tr class="memdesc:afb389a447b59890dce1eddceb64cce01"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for a siesta namelist input. <br /></td></tr>
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-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2d40e6ec26c58cffa367843b0491d5aa">v3fit_input::siesta_restart_filename</a> = ''</td></tr>
-<tr class="memdesc:a2d40e6ec26c58cffa367843b0491d5aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">File name for a siesta restart file. <br /></td></tr>
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-<tr class="memitem:af786af93e310aa065e95b891ae9cb5ab"><td class="memItemLeft" align="right" valign="top"><a id="af786af93e310aa065e95b891ae9cb5ab"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af786af93e310aa065e95b891ae9cb5ab">v3fit_input::ece_dot_filename</a> = ''</td></tr>
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-<tr class="memitem:ab1c443867144c97b12aaafbee516fad4"><td class="memItemLeft" align="right" valign="top"><a id="ab1c443867144c97b12aaafbee516fad4"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">v3fit_input::sxrem_ratio_dot_filename</a> = ''</td></tr>
-<tr class="memdesc:ab1c443867144c97b12aaafbee516fad4"><td class="mdescLeft">&#160;</td><td class="mdescRight">File holding soft x-ray ratio information. <br /></td></tr>
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-<tr class="memitem:aec2b0fa4f3dd7e442368fcd37fc50ed9"><td class="memItemLeft" align="right" valign="top"><a id="aec2b0fa4f3dd7e442368fcd37fc50ed9"></a>
-character(len=path_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aec2b0fa4f3dd7e442368fcd37fc50ed9">v3fit_input::limiter_grid_file</a> = ''</td></tr>
-<tr class="memdesc:aec2b0fa4f3dd7e442368fcd37fc50ed9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Limiter grid netcdf file. <br /></td></tr>
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-<tr class="memdesc:a9f1c5fc5b7869f26ebb650afbb55d73b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of signals to create.  <a href="namespacev3fit__input.html#a9f1c5fc5b7869f26ebb650afbb55d73b">More...</a><br /></td></tr>
-<tr class="separator:a9f1c5fc5b7869f26ebb650afbb55d73b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> = ''</td></tr>
-<tr class="memdesc:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">The v3fit task. Possible values are.  <a href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">More...</a><br /></td></tr>
-<tr class="separator:a82ad8af4c6bd0f4070ef0f35b933a1ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acf084faed4cf0c1352fcb0ded4a9d525"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">v3fit_input::pp_ne_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:acf084faed4cf0c1352fcb0ded4a9d525"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model electron density profile, parameterized profile type.  <a href="namespacev3fit__input.html#acf084faed4cf0c1352fcb0ded4a9d525">More...</a><br /></td></tr>
-<tr class="separator:acf084faed4cf0c1352fcb0ded4a9d525"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">v3fit_input::pp_ne_b</a> = 0.0</td></tr>
-<tr class="memdesc:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the electron density profile.  <a href="namespacev3fit__input.html#a5ebd8b58de885b8bd44779ef5bbadb12">More...</a><br /></td></tr>
-<tr class="separator:a5ebd8b58de885b8bd44779ef5bbadb12"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a391bee37cf57c463c16e5237121f2950"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">v3fit_input::pp_ne_as</a> = 0.0</td></tr>
-<tr class="memdesc:a391bee37cf57c463c16e5237121f2950"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients electron density splines.  <a href="namespacev3fit__input.html#a391bee37cf57c463c16e5237121f2950">More...</a><br /></td></tr>
-<tr class="separator:a391bee37cf57c463c16e5237121f2950"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">v3fit_input::pp_ne_af</a> = 0.0</td></tr>
-<tr class="memdesc:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients electron density splines.  <a href="namespacev3fit__input.html#a5fac45fcf9c6b115a7e4bb7cae7854c8">More...</a><br /></td></tr>
-<tr class="separator:a5fac45fcf9c6b115a7e4bb7cae7854c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afbb75117e851be78b8e4360e7383c199"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afbb75117e851be78b8e4360e7383c199">v3fit_input::pp_sxrem_ptype</a> = 'none'</td></tr>
-<tr class="separator:afbb75117e851be78b8e4360e7383c199"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a9cc45d9107490ae0070289782b75730c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:ad7a27d4aa3c3a65027b34183f95533a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85e26804e0bad2a97fe7582c1db8768c"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a85e26804e0bad2a97fe7582c1db8768c">v3fit_input::pp_sxrem_af</a> = 0.0</td></tr>
-<tr class="separator:a85e26804e0bad2a97fe7582c1db8768c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e2e535fc263699fec1e12f28860a658"><td class="memItemLeft" align="right" valign="top"><a id="a2e2e535fc263699fec1e12f28860a658"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2e2e535fc263699fec1e12f28860a658">v3fit_input::num_sxrem_p</a> = 1</td></tr>
-<tr class="memdesc:a2e2e535fc263699fec1e12f28860a658"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of sxrem profiles. <br /></td></tr>
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-<tr class="memdesc:ac44e39737eeaa08518fcc237d4db83ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model soft x-ray emissvity profile, parameterized profile type.  <a href="namespacev3fit__input.html#ac44e39737eeaa08518fcc237d4db83ff">More...</a><br /></td></tr>
-<tr class="separator:ac44e39737eeaa08518fcc237d4db83ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abc461ed4a3957e1e4f450c5f61011b9d"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">v3fit_input::pp_sxrem_b_a</a> = 0.0</td></tr>
-<tr class="memdesc:abc461ed4a3957e1e4f450c5f61011b9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the soft x-ray emissvity profile.  <a href="namespacev3fit__input.html#abc461ed4a3957e1e4f450c5f61011b9d">More...</a><br /></td></tr>
-<tr class="separator:abc461ed4a3957e1e4f450c5f61011b9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a499f4203b76175c919f656827e84b050"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">v3fit_input::pp_sxrem_as_a</a> = 0.0</td></tr>
-<tr class="memdesc:a499f4203b76175c919f656827e84b050"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients soft x-ray emissvity profile splines.  <a href="namespacev3fit__input.html#a499f4203b76175c919f656827e84b050">More...</a><br /></td></tr>
-<tr class="separator:a499f4203b76175c919f656827e84b050"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af9d99df5480b5043e77b21a9d6099da8"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(max_sxrem_profiles, iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">v3fit_input::pp_sxrem_af_a</a> = 0.0</td></tr>
-<tr class="memdesc:af9d99df5480b5043e77b21a9d6099da8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients soft x-ray emissvity profile splines.  <a href="namespacev3fit__input.html#af9d99df5480b5043e77b21a9d6099da8">More...</a><br /></td></tr>
-<tr class="separator:af9d99df5480b5043e77b21a9d6099da8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7d17618683967adb0bd8a5bdf9ff806"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">v3fit_input::pp_te_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:aa7d17618683967adb0bd8a5bdf9ff806"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model electron temperature profile, parameterized profile type.  <a href="namespacev3fit__input.html#aa7d17618683967adb0bd8a5bdf9ff806">More...</a><br /></td></tr>
-<tr class="separator:aa7d17618683967adb0bd8a5bdf9ff806"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">v3fit_input::pp_te_b</a> = 0.0</td></tr>
-<tr class="memdesc:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the electron temperature profile.  <a href="namespacev3fit__input.html#ad699c5f4f2865dc9f6be9660bebbbf1c">More...</a><br /></td></tr>
-<tr class="separator:ad699c5f4f2865dc9f6be9660bebbbf1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2adbf6ccd19859db9a684016c86e2a9a"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">v3fit_input::pp_te_as</a> = 0.0</td></tr>
-<tr class="memdesc:a2adbf6ccd19859db9a684016c86e2a9a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients electron temperature splines.  <a href="namespacev3fit__input.html#a2adbf6ccd19859db9a684016c86e2a9a">More...</a><br /></td></tr>
-<tr class="separator:a2adbf6ccd19859db9a684016c86e2a9a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d3fc1eae19a61d96469c773e1f5c239"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">v3fit_input::pp_te_af</a> = 0.0</td></tr>
-<tr class="memdesc:a5d3fc1eae19a61d96469c773e1f5c239"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients electron temperature splines.  <a href="namespacev3fit__input.html#a5d3fc1eae19a61d96469c773e1f5c239">More...</a><br /></td></tr>
-<tr class="separator:a5d3fc1eae19a61d96469c773e1f5c239"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a16d4351a6404cbf48ef877e5345b13a4"><td class="memItemLeft" align="right" valign="top">character(len=p_type_len)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">v3fit_input::pp_ti_ptype</a> = 'none'</td></tr>
-<tr class="memdesc:a16d4351a6404cbf48ef877e5345b13a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Model ion temperature profile, parameterized profile type.  <a href="namespacev3fit__input.html#a16d4351a6404cbf48ef877e5345b13a4">More...</a><br /></td></tr>
-<tr class="separator:a16d4351a6404cbf48ef877e5345b13a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26817309fd12dda7fc109e13e1e7b6c3"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(ilb_b:iub_b)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">v3fit_input::pp_ti_b</a> = 0.0</td></tr>
-<tr class="memdesc:a26817309fd12dda7fc109e13e1e7b6c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of b_coefficients for the ion temperature profile.  <a href="namespacev3fit__input.html#a26817309fd12dda7fc109e13e1e7b6c3">More...</a><br /></td></tr>
-<tr class="separator:a26817309fd12dda7fc109e13e1e7b6c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab25ad199efab607402f3efa28b05c259"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">v3fit_input::pp_ti_as</a> = 0.0</td></tr>
-<tr class="memdesc:ab25ad199efab607402f3efa28b05c259"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of as_coefficients ion temperature splines.  <a href="namespacev3fit__input.html#ab25ad199efab607402f3efa28b05c259">More...</a><br /></td></tr>
-<tr class="separator:ab25ad199efab607402f3efa28b05c259"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">v3fit_input::pp_ti_af</a> = 0.0</td></tr>
-<tr class="memdesc:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of af_coefficients ion temperature splines.  <a href="namespacev3fit__input.html#aeb653113a0e8f71d6dfbbb6e3aa41e7b">More...</a><br /></td></tr>
-<tr class="separator:aeb653113a0e8f71d6dfbbb6e3aa41e7b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae012a2d7050755e3fa8f0b4075fa722f"><td class="memItemLeft" align="right" valign="top"><a id="ae012a2d7050755e3fa8f0b4075fa722f"></a>
-real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae012a2d7050755e3fa8f0b4075fa722f">v3fit_input::sxrem_te_a</a> = 0.0</td></tr>
-<tr class="memdesc:ae012a2d7050755e3fa8f0b4075fa722f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of temperature points for the sxrem ratio function. <br /></td></tr>
-<tr class="separator:ae012a2d7050755e3fa8f0b4075fa722f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1aea7c110a801736a6c3125a5aac348d"><td class="memItemLeft" align="right" valign="top"><a id="a1aea7c110a801736a6c3125a5aac348d"></a>
-real(rprec), dimension(iub_asf)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1aea7c110a801736a6c3125a5aac348d">v3fit_input::sxrem_ratio_a</a> = 0.0</td></tr>
-<tr class="memdesc:a1aea7c110a801736a6c3125a5aac348d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of ratio points for the sxrem ratio function. <br /></td></tr>
-<tr class="separator:a1aea7c110a801736a6c3125a5aac348d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="memItemLeft" align="right" valign="top"><a id="a4f1b83d2c8ed6f395bc810bc09660b71"></a>
-character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4f1b83d2c8ed6f395bc810bc09660b71">v3fit_input::model_eq_type</a> = 'vmec'</td></tr>
-<tr class="memdesc:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify wich equilibrium to use. <br /></td></tr>
-<tr class="separator:a4f1b83d2c8ed6f395bc810bc09660b71"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af745a2d519ffade882e38c64e7b136da"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">v3fit_input::model_ne_type</a> = 'pp_ne'</td></tr>
-<tr class="memdesc:af745a2d519ffade882e38c64e7b136da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron density is computed by the model.  <a href="namespacev3fit__input.html#af745a2d519ffade882e38c64e7b136da">More...</a><br /></td></tr>
-<tr class="separator:af745a2d519ffade882e38c64e7b136da"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a31674b0ebbae407f94a99371be9b0636"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a31674b0ebbae407f94a99371be9b0636">v3fit_input::model_sxrem_type</a> = 'none'</td></tr>
-<tr class="separator:a31674b0ebbae407f94a99371be9b0636"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afa630ce3b00c409dfb57c00141d1aaa8"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length), dimension(max_sxrem_profiles)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afa630ce3b00c409dfb57c00141d1aaa8">v3fit_input::model_sxrem_type_a</a> = 'none'</td></tr>
-<tr class="memdesc:afa630ce3b00c409dfb57c00141d1aaa8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how soft x-ray emissivity is computed by the model.  <a href="namespacev3fit__input.html#afa630ce3b00c409dfb57c00141d1aaa8">More...</a><br /></td></tr>
-<tr class="separator:afa630ce3b00c409dfb57c00141d1aaa8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a03a390c32ec9004a1eec1e1022e8b363"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a03a390c32ec9004a1eec1e1022e8b363">v3fit_input::model_te_type</a> = 'none'</td></tr>
-<tr class="memdesc:a03a390c32ec9004a1eec1e1022e8b363"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron temperature is computed by the model.  <a href="namespacev3fit__input.html#a03a390c32ec9004a1eec1e1022e8b363">More...</a><br /></td></tr>
-<tr class="separator:a03a390c32ec9004a1eec1e1022e8b363"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad8e4c794da51a61f1ee96e1d61ea15c4">v3fit_input::model_ti_type</a> = 'none'</td></tr>
-<tr class="memdesc:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specify how electron temperature is computed by the model.  <a href="namespacev3fit__input.html#ad8e4c794da51a61f1ee96e1d61ea15c4">More...</a><br /></td></tr>
-<tr class="separator:ad8e4c794da51a61f1ee96e1d61ea15c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae356013fdf423e4188fbf9e1cddf3599"><td class="memItemLeft" align="right" valign="top"><a id="ae356013fdf423e4188fbf9e1cddf3599"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae356013fdf423e4188fbf9e1cddf3599">v3fit_input::ne_pp_unit</a> = 1.0E18</td></tr>
-<tr class="memdesc:ae356013fdf423e4188fbf9e1cddf3599"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normalization factor for the electron density. <br /></td></tr>
-<tr class="separator:ae356013fdf423e4188fbf9e1cddf3599"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa94f9318f90453e9dc5e661f69439b68"><td class="memItemLeft" align="right" valign="top"><a id="aa94f9318f90453e9dc5e661f69439b68"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa94f9318f90453e9dc5e661f69439b68">v3fit_input::ne_min</a> = 0.0</td></tr>
-<tr class="memdesc:aa94f9318f90453e9dc5e661f69439b68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum electron density. <br /></td></tr>
-<tr class="separator:aa94f9318f90453e9dc5e661f69439b68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a084d31503aaa6c68d046a1d41a9eaf63"><td class="memItemLeft" align="right" valign="top"><a id="a084d31503aaa6c68d046a1d41a9eaf63"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a084d31503aaa6c68d046a1d41a9eaf63">v3fit_input::te_min</a> = 0.0</td></tr>
-<tr class="memdesc:a084d31503aaa6c68d046a1d41a9eaf63"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum electron temperature. <br /></td></tr>
-<tr class="separator:a084d31503aaa6c68d046a1d41a9eaf63"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0367dfcbb23024e3e527e86df2ca6b68"><td class="memItemLeft" align="right" valign="top"><a id="a0367dfcbb23024e3e527e86df2ca6b68"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0367dfcbb23024e3e527e86df2ca6b68">v3fit_input::ti_min</a> = 0.0</td></tr>
-<tr class="memdesc:a0367dfcbb23024e3e527e86df2ca6b68"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum ion temperature. <br /></td></tr>
-<tr class="separator:a0367dfcbb23024e3e527e86df2ca6b68"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0fb1e3a467bb70bfcb7098781678eba"><td class="memItemLeft" align="right" valign="top"><a id="ac0fb1e3a467bb70bfcb7098781678eba"></a>
-real(rprec), dimension(max_sxrem_profiles)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac0fb1e3a467bb70bfcb7098781678eba">v3fit_input::sxrem_min</a> = 0.0</td></tr>
-<tr class="memdesc:ac0fb1e3a467bb70bfcb7098781678eba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum soft x-ray emission. <br /></td></tr>
-<tr class="separator:ac0fb1e3a467bb70bfcb7098781678eba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="memItemLeft" align="right" valign="top"><a id="a5ed8f65dd06c73918ebfa04ede7b5fb1"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ed8f65dd06c73918ebfa04ede7b5fb1">v3fit_input::e_pressure_fraction</a> = 0.5</td></tr>
-<tr class="memdesc:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the fraction of the pressure constributed by the electrons. <br /></td></tr>
-<tr class="separator:a5ed8f65dd06c73918ebfa04ede7b5fb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="memItemLeft" align="right" valign="top"><a id="a9b6bbdb8aafa7343b19b4ddba3c02512"></a>
-character(len=data_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9b6bbdb8aafa7343b19b4ddba3c02512">v3fit_input::emission_file</a> = ''</td></tr>
-<tr class="memdesc:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies the path to the file contain the soft x-ray emission function. <br /></td></tr>
-<tr class="separator:a9b6bbdb8aafa7343b19b4ddba3c02512"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5ea57408967601f98371a8a2f9985895"><td class="memItemLeft" align="right" valign="top"><a id="a5ea57408967601f98371a8a2f9985895"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5ea57408967601f98371a8a2f9985895">v3fit_input::ece_resonance_range</a> = 0.0</td></tr>
-<tr class="memdesc:a5ea57408967601f98371a8a2f9985895"><td class="mdescLeft">&#160;</td><td class="mdescRight">ECE resonance search range. <br /></td></tr>
-<tr class="separator:a5ea57408967601f98371a8a2f9985895"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="memItemLeft" align="right" valign="top"><a id="a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"></a>
-real(rprec), dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4fa5b11ba2b5ef8f1b1d967b35fbaa8a">v3fit_input::coosig_wgts</a> = 0.0</td></tr>
-<tr class="memdesc:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of combination parameter signal weights. <br /></td></tr>
-<tr class="separator:a4fa5b11ba2b5ef8f1b1d967b35fbaa8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="memItemLeft" align="right" valign="top"><a id="aa1ebc0f638a20b685987f0dfe1c72c4c"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa1ebc0f638a20b685987f0dfe1c72c4c">v3fit_input::n_rc</a> = 0</td></tr>
-<tr class="memdesc:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:aa1ebc0f638a20b685987f0dfe1c72c4c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a21db612f7dc38fd8a98cfce3b527c509"><td class="memItemLeft" align="right" valign="top"><a id="a21db612f7dc38fd8a98cfce3b527c509"></a>
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-<tr class="memdesc:a21db612f7dc38fd8a98cfce3b527c509"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a21db612f7dc38fd8a98cfce3b527c509"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="memItemLeft" align="right" valign="top"><a id="a3341ca9d709df8ae0f49946bfdc5a4e4"></a>
-integer, dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3341ca9d709df8ae0f49946bfdc5a4e4">v3fit_input::rc_index</a> = 0</td></tr>
-<tr class="memdesc:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a3341ca9d709df8ae0f49946bfdc5a4e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6785668e1153612adfe5ed8676bdf289"><td class="memItemLeft" align="right" valign="top"><a id="a6785668e1153612adfe5ed8676bdf289"></a>
-real(rprec), dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6785668e1153612adfe5ed8676bdf289">v3fit_input::rc_value</a> = 0.0</td></tr>
-<tr class="memdesc:a6785668e1153612adfe5ed8676bdf289"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
-<tr class="separator:a6785668e1153612adfe5ed8676bdf289"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7adc371e0b3a169e5e4beacbf6be9478"><td class="memItemLeft" align="right" valign="top"><a id="a7adc371e0b3a169e5e4beacbf6be9478"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7adc371e0b3a169e5e4beacbf6be9478">v3fit_input::n_dp</a> = 0</td></tr>
-<tr class="memdesc:a7adc371e0b3a169e5e4beacbf6be9478"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of derived parameters. <br /></td></tr>
-<tr class="separator:a7adc371e0b3a169e5e4beacbf6be9478"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1fe6cc0ff64e6eb910c6f8c717677896"><td class="memItemLeft" align="right" valign="top"><a id="a1fe6cc0ff64e6eb910c6f8c717677896"></a>
-character(len=data_name_length), dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1fe6cc0ff64e6eb910c6f8c717677896">v3fit_input::dp_type</a> = ''</td></tr>
-<tr class="memdesc:a1fe6cc0ff64e6eb910c6f8c717677896"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of derived parameters. <br /></td></tr>
-<tr class="separator:a1fe6cc0ff64e6eb910c6f8c717677896"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5a5beb5e288bc2e2601a6d553ddfbcce"><td class="memItemLeft" align="right" valign="top"><a id="a5a5beb5e288bc2e2601a6d553ddfbcce"></a>
-integer, dimension(v3fit_max_parameters, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5a5beb5e288bc2e2601a6d553ddfbcce">v3fit_input::dp_index</a> = 0</td></tr>
-<tr class="memdesc:a5a5beb5e288bc2e2601a6d553ddfbcce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of derived parameters. <br /></td></tr>
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-<tr class="memitem:a6c1c93425f04f7f004593be942760314"><td class="memItemLeft" align="right" valign="top"><a id="a6c1c93425f04f7f004593be942760314"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6c1c93425f04f7f004593be942760314">v3fit_input::n_rp</a> = 0</td></tr>
-<tr class="memdesc:a6c1c93425f04f7f004593be942760314"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:afbcb33671b5363e966f6155d12925e2a"><td class="memItemLeft" align="right" valign="top"><a id="afbcb33671b5363e966f6155d12925e2a"></a>
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-<tr class="memdesc:afbcb33671b5363e966f6155d12925e2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:a922dfb1a34849076bf51434ddee6befa"><td class="memItemLeft" align="right" valign="top"><a id="a922dfb1a34849076bf51434ddee6befa"></a>
-integer, dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a922dfb1a34849076bf51434ddee6befa">v3fit_input::rp_index</a> = 0</td></tr>
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-integer, dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2aebe7cefbdfff183e687deb3ad098c0">v3fit_input::rp_index2</a> = 0</td></tr>
-<tr class="memdesc:a2aebe7cefbdfff183e687deb3ad098c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of reconstruction parameters. <br /></td></tr>
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-<tr class="memitem:a2b70e391fc06040c923c580b881bbd28"><td class="memItemLeft" align="right" valign="top"><a id="a2b70e391fc06040c923c580b881bbd28"></a>
-real(rprec), dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2b70e391fc06040c923c580b881bbd28">v3fit_input::rp_vrnc</a> = 0.0</td></tr>
-<tr class="memdesc:a2b70e391fc06040c923c580b881bbd28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum reconstruction increment. <br /></td></tr>
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-<tr class="memitem:ad37a237759d4d29d0d8b029a7c3274be"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length), dimension(v3fit_max_parameters, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad37a237759d4d29d0d8b029a7c3274be">v3fit_input::rp_range_type</a> = 'infinity'</td></tr>
-<tr class="memdesc:ad37a237759d4d29d0d8b029a7c3274be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range types. The first index is the lower range and second index the upper range.  <a href="namespacev3fit__input.html#ad37a237759d4d29d0d8b029a7c3274be">More...</a><br /></td></tr>
-<tr class="separator:ad37a237759d4d29d0d8b029a7c3274be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1cd8831eb51c75138324c8617f3addaf"><td class="memItemLeft" align="right" valign="top"><a id="a1cd8831eb51c75138324c8617f3addaf"></a>
-real(rprec), dimension(v3fit_max_parameters, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1cd8831eb51c75138324c8617f3addaf">v3fit_input::rp_range_value</a> = 0.0</td></tr>
-<tr class="memdesc:a1cd8831eb51c75138324c8617f3addaf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range value. The first index is the lower range and second index the upper range. <br /></td></tr>
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-integer, dimension(v3fit_max_parameters, 2, data_max_indices)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a325ac78603af52466c911d346ef21b9f">v3fit_input::rp_range_index</a> = 0</td></tr>
-<tr class="memdesc:a325ac78603af52466c911d346ef21b9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter range indices. The first index is the lower range and second index the upper range. <br /></td></tr>
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-<tr class="memitem:ae3952bf12802cac415f42af5b0019fe5"><td class="memItemLeft" align="right" valign="top"><a id="ae3952bf12802cac415f42af5b0019fe5"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae3952bf12802cac415f42af5b0019fe5">v3fit_input::n_lp</a> = 0</td></tr>
-<tr class="memdesc:ae3952bf12802cac415f42af5b0019fe5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of locking parameters. <br /></td></tr>
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-<tr class="memitem:a573efd2e66f6513ec56822452cd0412c"><td class="memItemLeft" align="right" valign="top"><a id="a573efd2e66f6513ec56822452cd0412c"></a>
-character(len=data_name_length), dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a573efd2e66f6513ec56822452cd0412c">v3fit_input::lp_type</a> = ''</td></tr>
-<tr class="memdesc:a573efd2e66f6513ec56822452cd0412c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of locking parameters. <br /></td></tr>
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-<tr class="memitem:addec141a80c9f49c9ab6f07c673e1348"><td class="memItemLeft" align="right" valign="top"><a id="addec141a80c9f49c9ab6f07c673e1348"></a>
-integer, dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#addec141a80c9f49c9ab6f07c673e1348">v3fit_input::lp_index</a> = 0</td></tr>
-<tr class="memdesc:addec141a80c9f49c9ab6f07c673e1348"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ith index of locking parameters. <br /></td></tr>
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-integer, dimension(v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab9fa5501afe4180f079943391a110241">v3fit_input::lp_index2</a> = 0</td></tr>
-<tr class="memdesc:ab9fa5501afe4180f079943391a110241"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of locking parameters. <br /></td></tr>
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-<tr class="memitem:a2a6b52611571eb12a99cf08bb36160a1"><td class="memItemLeft" align="right" valign="top"><a id="a2a6b52611571eb12a99cf08bb36160a1"></a>
-character(len=data_name_length), dimension(v3fit_max_parameters, v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2a6b52611571eb12a99cf08bb36160a1">v3fit_input::lp_sets</a> = ''</td></tr>
-<tr class="memdesc:a2a6b52611571eb12a99cf08bb36160a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Names of parameters to lock to. <br /></td></tr>
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-<tr class="memitem:a38c02cb03f69ba62fffd17714561bee0"><td class="memItemLeft" align="right" valign="top"><a id="a38c02cb03f69ba62fffd17714561bee0"></a>
-integer, dimension(v3fit_max_parameters, v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a38c02cb03f69ba62fffd17714561bee0">v3fit_input::lp_sets_index</a> = 0</td></tr>
-<tr class="memdesc:a38c02cb03f69ba62fffd17714561bee0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ith index of parameters to lock to. <br /></td></tr>
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-<tr class="memitem:a01e2fa62a9ee2f8233055d811fa0a8ef"><td class="memItemLeft" align="right" valign="top"><a id="a01e2fa62a9ee2f8233055d811fa0a8ef"></a>
-integer, dimension(v3fit_max_parameters, v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a01e2fa62a9ee2f8233055d811fa0a8ef">v3fit_input::lp_sets_index2</a> = 0</td></tr>
-<tr class="memdesc:a01e2fa62a9ee2f8233055d811fa0a8ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Jth index of parameters to lock to. <br /></td></tr>
-<tr class="separator:a01e2fa62a9ee2f8233055d811fa0a8ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a247aa2d91b019cc2af097d86b400228e"><td class="memItemLeft" align="right" valign="top"><a id="a247aa2d91b019cc2af097d86b400228e"></a>
-real(rprec), dimension(v3fit_max_parameters, v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a247aa2d91b019cc2af097d86b400228e">v3fit_input::lp_sets_coeff</a> = 0.0</td></tr>
-<tr class="memdesc:a247aa2d91b019cc2af097d86b400228e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lock parameter coefficients. <br /></td></tr>
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-<tr class="memitem:a0b959b12e237e9d4266f269f4b67ca86"><td class="memItemLeft" align="right" valign="top">integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0b959b12e237e9d4266f269f4b67ca86">v3fit_input::n_sdata_o</a> = 0</td></tr>
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-<tr class="memitem:aea70aa9d8ac8fbac3e2aac8813ba649a"><td class="memItemLeft" align="right" valign="top"><a id="aea70aa9d8ac8fbac3e2aac8813ba649a"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aea70aa9d8ac8fbac3e2aac8813ba649a">v3fit_input::iw_sdo_verbose</a> = -1</td></tr>
-<tr class="memdesc:aea70aa9d8ac8fbac3e2aac8813ba649a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Not implemented. <br /></td></tr>
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-<tr class="memitem:a5eccf98434b659e7a02f3cfe51b43fed"><td class="memItemLeft" align="right" valign="top"><a id="a5eccf98434b659e7a02f3cfe51b43fed"></a>
-real(rprec), dimension(v3fit_max_signals)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5eccf98434b659e7a02f3cfe51b43fed">v3fit_input::sdo_data_a</a> = 0.0</td></tr>
-<tr class="memdesc:a5eccf98434b659e7a02f3cfe51b43fed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed signals. <br /></td></tr>
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-real(rprec), dimension(v3fit_max_signals)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac4381a40c42a88f830641b747aa3f6a4">v3fit_input::sdo_sigma_a</a> = 0.0</td></tr>
-<tr class="memdesc:ac4381a40c42a88f830641b747aa3f6a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed sigmas. <br /></td></tr>
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-<tr class="memitem:aaf7f90ceb1b3e5c528a69b9dbac48795"><td class="memItemLeft" align="right" valign="top"><a id="aaf7f90ceb1b3e5c528a69b9dbac48795"></a>
-real(rprec), dimension(v3fit_max_signals)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aaf7f90ceb1b3e5c528a69b9dbac48795">v3fit_input::sdo_weight_a</a> = 1.0</td></tr>
-<tr class="memdesc:aaf7f90ceb1b3e5c528a69b9dbac48795"><td class="mdescLeft">&#160;</td><td class="mdescRight">Observed weights. <br /></td></tr>
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-<tr class="memitem:adf569e8c30db521a4cbea257752d0c4b"><td class="memItemLeft" align="right" valign="top"><a id="adf569e8c30db521a4cbea257752d0c4b"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#adf569e8c30db521a4cbea257752d0c4b">v3fit_input::sdo_spec_can_overwrite</a> = .true.</td></tr>
-<tr class="memdesc:adf569e8c30db521a4cbea257752d0c4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allow the sigma spec to overwrite the sigma array. <br /></td></tr>
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-<tr class="memitem:ab411452479e901a79f09ae2361bebd2b"><td class="memItemLeft" align="right" valign="top"><a id="ab411452479e901a79f09ae2361bebd2b"></a>
-logical, dimension(v3fit_max_diagnostics)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab411452479e901a79f09ae2361bebd2b">v3fit_input::mag_a</a> = .true.</td></tr>
-<tr class="memdesc:ab411452479e901a79f09ae2361bebd2b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic signal flags. Controls if the induced signal is included in the total signal. <br /></td></tr>
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-logical, dimension(v3fit_max_diagnostics)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a04e50a0867d3787d072dabe967abb864">v3fit_input::mag_3d_a</a> = .false.</td></tr>
-<tr class="memdesc:a04e50a0867d3787d072dabe967abb864"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic signal flags. Controls if the axisymmetric part of the signal is removed from the model signal. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa1a2082e5115ba5f13f6bf31e5f2014a">v3fit_input::mag_force_coil</a> = .false.</td></tr>
-<tr class="memdesc:aa1a2082e5115ba5f13f6bf31e5f2014a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forces the magnetic signal to compute the induced signal. <br /></td></tr>
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-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a84bec11b26633f36ec725c42617cd579">v3fit_input::sdo_s_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a84bec11b26633f36ec725c42617cd579"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification lower index. <br /></td></tr>
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-<tr class="memitem:afde913ecbabb4dbe6d11a2078f846370"><td class="memItemLeft" align="right" valign="top"><a id="afde913ecbabb4dbe6d11a2078f846370"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afde913ecbabb4dbe6d11a2078f846370">v3fit_input::sdo_s_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:afde913ecbabb4dbe6d11a2078f846370"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification upper index. <br /></td></tr>
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-<tr class="memdesc:a640d556ef08bd4ecdd97af9788d1bfd8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification floor. <br /></td></tr>
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-real(rprec), dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0e1a5aa868d02a69a147362a819b6674">v3fit_input::sdo_s_spec_fraction</a> = 0.0</td></tr>
-<tr class="memdesc:a0e1a5aa868d02a69a147362a819b6674"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sigma specification fraction. <br /></td></tr>
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-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4baaac56042fab4c55405184367ce17e">v3fit_input::sdo_w_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a4baaac56042fab4c55405184367ce17e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification lower index. <br /></td></tr>
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-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abb1616830d26e0ab66f3b46d59f81831">v3fit_input::sdo_w_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:abb1616830d26e0ab66f3b46d59f81831"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification upper index. <br /></td></tr>
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-<tr class="memdesc:a2b0c487db8a1b6aa5eb18d3919aa31fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight specification weight. <br /></td></tr>
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-<tr class="memitem:aa13b923b10e98758cabc2d14896a0551"><td class="memItemLeft" align="right" valign="top"><a id="aa13b923b10e98758cabc2d14896a0551"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa13b923b10e98758cabc2d14896a0551">v3fit_input::mag_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:aa13b923b10e98758cabc2d14896a0551"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification lower index. <br /></td></tr>
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-<tr class="memitem:ae304f641e15cd1885631abf6d2efe1af"><td class="memItemLeft" align="right" valign="top"><a id="ae304f641e15cd1885631abf6d2efe1af"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae304f641e15cd1885631abf6d2efe1af">v3fit_input::mag_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:ae304f641e15cd1885631abf6d2efe1af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification upper index. <br /></td></tr>
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-<tr class="memitem:a35eea91e2c76dcd3e49b9d20574e3157"><td class="memItemLeft" align="right" valign="top"><a id="a35eea91e2c76dcd3e49b9d20574e3157"></a>
-logical, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a35eea91e2c76dcd3e49b9d20574e3157">v3fit_input::mag_spec_use_induced</a> = .true.</td></tr>
-<tr class="memdesc:a35eea91e2c76dcd3e49b9d20574e3157"><td class="mdescLeft">&#160;</td><td class="mdescRight">Magnetic specification toggle induced coil signal. <br /></td></tr>
-<tr class="separator:a35eea91e2c76dcd3e49b9d20574e3157"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7a3cf3ce87524d4a927e44343ff6690a"><td class="memItemLeft" align="right" valign="top"><a id="a7a3cf3ce87524d4a927e44343ff6690a"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7a3cf3ce87524d4a927e44343ff6690a">v3fit_input::pol_rad_ratio</a> = 1.0</td></tr>
-<tr class="memdesc:a7a3cf3ce87524d4a927e44343ff6690a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ratio of the number of poloidal grid points to radial grid points. <br /></td></tr>
-<tr class="separator:a7a3cf3ce87524d4a927e44343ff6690a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d7388793df867a50aae96474807c9ae"><td class="memItemLeft" align="right" valign="top"><a id="a7d7388793df867a50aae96474807c9ae"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a7d7388793df867a50aae96474807c9ae">v3fit_input::sfactor_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a7d7388793df867a50aae96474807c9ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification lower index. <br /></td></tr>
-<tr class="separator:a7d7388793df867a50aae96474807c9ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="memItemLeft" align="right" valign="top"><a id="a0c9e757dd5e7fc3203b6da6363cbd31b"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a0c9e757dd5e7fc3203b6da6363cbd31b">v3fit_input::sfactor_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification upper index. <br /></td></tr>
-<tr class="separator:a0c9e757dd5e7fc3203b6da6363cbd31b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeedb001946f7995fdb6e7549e4fc1729"><td class="memItemLeft" align="right" valign="top"><a id="aeedb001946f7995fdb6e7549e4fc1729"></a>
-real(rprec), dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aeedb001946f7995fdb6e7549e4fc1729">v3fit_input::sfactor_spec_fac</a> = 0.0</td></tr>
-<tr class="memdesc:aeedb001946f7995fdb6e7549e4fc1729"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal scale factor. <br /></td></tr>
-<tr class="separator:aeedb001946f7995fdb6e7549e4fc1729"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2899fb18ce5ae15243a0b67f9adbef94"><td class="memItemLeft" align="right" valign="top"><a id="a2899fb18ce5ae15243a0b67f9adbef94"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a2899fb18ce5ae15243a0b67f9adbef94">v3fit_input::soffset_spec_imin</a> = 0</td></tr>
-<tr class="memdesc:a2899fb18ce5ae15243a0b67f9adbef94"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification lower index. <br /></td></tr>
-<tr class="separator:a2899fb18ce5ae15243a0b67f9adbef94"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a865f82a521a5c0de1a798076bf9b5e12"><td class="memItemLeft" align="right" valign="top"><a id="a865f82a521a5c0de1a798076bf9b5e12"></a>
-integer, dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a865f82a521a5c0de1a798076bf9b5e12">v3fit_input::soffset_spec_imax</a> = 0</td></tr>
-<tr class="memdesc:a865f82a521a5c0de1a798076bf9b5e12"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal factor specification upper index. <br /></td></tr>
-<tr class="separator:a865f82a521a5c0de1a798076bf9b5e12"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="memItemLeft" align="right" valign="top"><a id="afcd1be81ddae51729f5642e4fd2f0fa5"></a>
-real(rprec), dimension(v3fit_max_spec_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afcd1be81ddae51729f5642e4fd2f0fa5">v3fit_input::soffset_spec_fac</a> = 0.0</td></tr>
-<tr class="memdesc:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Signal scale factor. <br /></td></tr>
-<tr class="separator:afcd1be81ddae51729f5642e4fd2f0fa5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a11987511aea794ac429ac277a0e5ea9d"><td class="memItemLeft" align="right" valign="top">real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">v3fit_input::extcurz_s0</a> = -1.0</td></tr>
-<tr class="memdesc:a11987511aea794ac429ac277a0e5ea9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">External Z current radial position.  <a href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">More...</a><br /></td></tr>
-<tr class="separator:a11987511aea794ac429ac277a0e5ea9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a555584a3df19eb60f116d9f7a9bc4211"><td class="memItemLeft" align="right" valign="top"><a id="a555584a3df19eb60f116d9f7a9bc4211"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a555584a3df19eb60f116d9f7a9bc4211">v3fit_input::extcurz_u0</a> = 0.0</td></tr>
-<tr class="memdesc:a555584a3df19eb60f116d9f7a9bc4211"><td class="mdescLeft">&#160;</td><td class="mdescRight">External Z current poloidal angle. <br /></td></tr>
-<tr class="separator:a555584a3df19eb60f116d9f7a9bc4211"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9059b0461b1526f0b37edd0ed8471f1b"><td class="memItemLeft" align="right" valign="top"><a id="a9059b0461b1526f0b37edd0ed8471f1b"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a9059b0461b1526f0b37edd0ed8471f1b">v3fit_input::r_major_radius</a></td></tr>
-<tr class="memdesc:a9059b0461b1526f0b37edd0ed8471f1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Geometric limiter major radius. <br /></td></tr>
-<tr class="separator:a9059b0461b1526f0b37edd0ed8471f1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a457741ccea4be3ff7dab9609a1c6040c"><td class="memItemLeft" align="right" valign="top"><a id="a457741ccea4be3ff7dab9609a1c6040c"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a457741ccea4be3ff7dab9609a1c6040c">v3fit_input::a_minor_radius</a></td></tr>
-<tr class="memdesc:a457741ccea4be3ff7dab9609a1c6040c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Geometric limiter minor radius. <br /></td></tr>
-<tr class="separator:a457741ccea4be3ff7dab9609a1c6040c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85d99f2d1957cd777b3cc8bec31fdec8"><td class="memItemLeft" align="right" valign="top"><a id="a85d99f2d1957cd777b3cc8bec31fdec8"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a85d99f2d1957cd777b3cc8bec31fdec8">v3fit_input::n_lif</a> = 0</td></tr>
-<tr class="memdesc:a85d99f2d1957cd777b3cc8bec31fdec8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of specified limiter iso functions. <br /></td></tr>
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-<tr class="memitem:ae88a1c871a7c457edc0d474995323382"><td class="memItemLeft" align="right" valign="top"><a id="ae88a1c871a7c457edc0d474995323382"></a>
-integer, dimension(v3fit_max_limiters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae88a1c871a7c457edc0d474995323382">v3fit_input::n_phi_lif</a> = 0</td></tr>
-<tr class="memdesc:ae88a1c871a7c457edc0d474995323382"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of phi planes for an iso functions. <br /></td></tr>
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-<tr class="memitem:a3cdeac24ffe859cc7d02ce89e50cbb0b"><td class="memItemLeft" align="right" valign="top"><a id="a3cdeac24ffe859cc7d02ce89e50cbb0b"></a>
-real(rprec), dimension(v3fit_max_limiters, 0:4, 0:4)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a3cdeac24ffe859cc7d02ce89e50cbb0b">v3fit_input::lif_arz</a> = 0.0</td></tr>
-<tr class="memdesc:a3cdeac24ffe859cc7d02ce89e50cbb0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of r-z polynomial coefficients. <br /></td></tr>
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-<tr class="memitem:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="memItemLeft" align="right" valign="top"><a id="a4c7b9c1bb980f6d66aa1e7114aca0a2c"></a>
-real(rprec), dimension(v3fit_max_limiters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a4c7b9c1bb980f6d66aa1e7114aca0a2c">v3fit_input::lif_rc</a> = 0.0</td></tr>
-<tr class="memdesc:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of r offset values. <br /></td></tr>
-<tr class="separator:a4c7b9c1bb980f6d66aa1e7114aca0a2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a302b7767d09f14ef9b7432faec8f485d"><td class="memItemLeft" align="right" valign="top"><a id="a302b7767d09f14ef9b7432faec8f485d"></a>
-real(rprec), dimension(v3fit_max_limiters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a302b7767d09f14ef9b7432faec8f485d">v3fit_input::lif_zc</a> = 0.0</td></tr>
-<tr class="memdesc:a302b7767d09f14ef9b7432faec8f485d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of z offset values. <br /></td></tr>
-<tr class="separator:a302b7767d09f14ef9b7432faec8f485d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1c59562442dd0357a132744ea7bfb93c"><td class="memItemLeft" align="right" valign="top"><a id="a1c59562442dd0357a132744ea7bfb93c"></a>
-real(rprec), dimension(v3fit_max_limiters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1c59562442dd0357a132744ea7bfb93c">v3fit_input::lif_sigma</a> = 0.001_dp</td></tr>
-<tr class="memdesc:a1c59562442dd0357a132744ea7bfb93c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of sigma values. <br /></td></tr>
-<tr class="separator:a1c59562442dd0357a132744ea7bfb93c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a37c539b1ed29562125f0931762de7835"><td class="memItemLeft" align="right" valign="top"><a id="a37c539b1ed29562125f0931762de7835"></a>
-real(rprec), dimension(v3fit_max_limiters, v3fit_max_lif_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a37c539b1ed29562125f0931762de7835">v3fit_input::lif_phi_degree</a> = 0.0</td></tr>
-<tr class="memdesc:a37c539b1ed29562125f0931762de7835"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of phi values. Number of phi values need to be match <a class="el" href="namespacev3fit__input.html#ae88a1c871a7c457edc0d474995323382">n_phi_lif</a>. <br /></td></tr>
-<tr class="separator:a37c539b1ed29562125f0931762de7835"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad059df5d621362dfaec5d6a863fe7fce"><td class="memItemLeft" align="right" valign="top"><a id="ad059df5d621362dfaec5d6a863fe7fce"></a>
-logical, dimension(v3fit_max_limiters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad059df5d621362dfaec5d6a863fe7fce">v3fit_input::lif_on_edge</a> = .false.</td></tr>
-<tr class="memdesc:ad059df5d621362dfaec5d6a863fe7fce"><td class="mdescLeft">&#160;</td><td class="mdescRight">True specifies that the edge hits the limiter. False specifies that the edge is inside the limiter. <br /></td></tr>
-<tr class="separator:ad059df5d621362dfaec5d6a863fe7fce"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="memItemLeft" align="right" valign="top"><a id="aa9a8acf596701ecc2bba5b32c7bc0389"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa9a8acf596701ecc2bba5b32c7bc0389">v3fit_input::n_prior</a> = 0</td></tr>
-<tr class="memdesc:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of specified priors. <br /></td></tr>
-<tr class="separator:aa9a8acf596701ecc2bba5b32c7bc0389"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a30b5db6c5eae2374369b9be3d8b189d6"><td class="memItemLeft" align="right" valign="top"><a id="a30b5db6c5eae2374369b9be3d8b189d6"></a>
-character(len=data_name_length), dimension(v3fit_max_priors)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a30b5db6c5eae2374369b9be3d8b189d6">v3fit_input::prior_name</a> = ''</td></tr>
-<tr class="memdesc:a30b5db6c5eae2374369b9be3d8b189d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior names. <br /></td></tr>
-<tr class="separator:a30b5db6c5eae2374369b9be3d8b189d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a82605442d5d24ccb42c4e0b82ca8764b"><td class="memItemLeft" align="right" valign="top"><a id="a82605442d5d24ccb42c4e0b82ca8764b"></a>
-character(len=data_name_length), dimension(v3fit_max_priors)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a82605442d5d24ccb42c4e0b82ca8764b">v3fit_input::prior_param_name</a> = ''</td></tr>
-<tr class="memdesc:a82605442d5d24ccb42c4e0b82ca8764b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior parameter names. <br /></td></tr>
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-<tr class="memitem:aaf059e86644d4f94716216ee191c60b2"><td class="memItemLeft" align="right" valign="top"><a id="aaf059e86644d4f94716216ee191c60b2"></a>
-integer, dimension(v3fit_max_priors, 2)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aaf059e86644d4f94716216ee191c60b2">v3fit_input::prior_indices</a> = 0</td></tr>
-<tr class="memdesc:aaf059e86644d4f94716216ee191c60b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior parameter indicies. <br /></td></tr>
-<tr class="separator:aaf059e86644d4f94716216ee191c60b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ada19786a1d2a3762727c1ec3c46c7e40"><td class="memItemLeft" align="right" valign="top"><a id="ada19786a1d2a3762727c1ec3c46c7e40"></a>
-character(len=data_short_name_length), dimension(v3fit_max_priors)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ada19786a1d2a3762727c1ec3c46c7e40">v3fit_input::prior_units</a> = ''</td></tr>
-<tr class="memdesc:ada19786a1d2a3762727c1ec3c46c7e40"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prior Units. <br /></td></tr>
-<tr class="separator:ada19786a1d2a3762727c1ec3c46c7e40"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33aae0a4b63d98db40161869d222aaec"><td class="memItemLeft" align="right" valign="top"><a id="a33aae0a4b63d98db40161869d222aaec"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a33aae0a4b63d98db40161869d222aaec">v3fit_input::n_coosig</a> = 0</td></tr>
-<tr class="memdesc:a33aae0a4b63d98db40161869d222aaec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of combination signals. <br /></td></tr>
-<tr class="separator:a33aae0a4b63d98db40161869d222aaec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abf490c25c8051f8da13d6c686f94d321"><td class="memItemLeft" align="right" valign="top"><a id="abf490c25c8051f8da13d6c686f94d321"></a>
-integer, dimension(v3fit_max_combinations)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">v3fit_input::n_sig_coosig</a> = 0</td></tr>
-<tr class="memdesc:abf490c25c8051f8da13d6c686f94d321"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of signals in a combination signal. <br /></td></tr>
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-<tr class="memdesc:a1b45c303a4a33d3aeb9e7c10f01a72e3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of the number signals to combine. Number if indices needs to match <a class="el" href="namespacev3fit__input.html#abf490c25c8051f8da13d6c686f94d321">n_sig_coosig</a>. <br /></td></tr>
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-real(rprec), dimension(v3fit_max_combinations, v3fit_max_cos_size)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad2cccf80c02ca6ba2de6d4b8e2868606">v3fit_input::coosig_coeff</a> = 0.0</td></tr>
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-<tr class="memitem:a5f11fb1eaefb9e1baa4420405c09dff1"><td class="memItemLeft" align="right" valign="top">character(len=combination_type_length), dimension(v3fit_max_combinations)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5f11fb1eaefb9e1baa4420405c09dff1">v3fit_input::coosig_type</a> = 'sum'</td></tr>
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-<tr class="separator:a5f11fb1eaefb9e1baa4420405c09dff1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6eca729d3823689fab757e1a110b83f5"><td class="memItemLeft" align="right" valign="top"><a id="a6eca729d3823689fab757e1a110b83f5"></a>
-character(len=data_name_length), dimension(v3fit_max_combinations)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6eca729d3823689fab757e1a110b83f5">v3fit_input::coosig_name</a> = ''</td></tr>
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-integer, dimension(v3fit_max_combinations)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a424222ecade94f218e98e9fdc5597c8a">v3fit_input::coosig_wgts_id</a> = -1</td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a6096056621b3bfbc8be65b43df8ce4bd">v3fit_input::n_gp</a> = 0</td></tr>
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-integer, dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#aa41b29b78fa647a3a3877948477defb5">v3fit_input::n_gp_signal</a> = 0</td></tr>
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-<tr class="memitem:abfe80817d9f2b145f130f61dd1a1969f"><td class="memItemLeft" align="right" valign="top"><a id="abfe80817d9f2b145f130f61dd1a1969f"></a>
-integer, dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#abfe80817d9f2b145f130f61dd1a1969f">v3fit_input::gp_model_index</a> = 0</td></tr>
-<tr class="memdesc:abfe80817d9f2b145f130f61dd1a1969f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gaussian process model type ID for models with multiple profiles. <br /></td></tr>
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-real(rprec), dimension(max_gaussprocess, v3fit_max_parameters)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a56b11d42c6665df47371874e9c994deb">v3fit_input::gp_param_vrnc</a> = 0.001</td></tr>
-<tr class="memdesc:a56b11d42c6665df47371874e9c994deb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Variances for the hyper parameters. <br /></td></tr>
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-real(rprec), dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#afa61fd490a6502b6ea4cca7996b87b14">v3fit_input::gp_tolerance</a> = 1.0E-4</td></tr>
-<tr class="memdesc:afa61fd490a6502b6ea4cca7996b87b14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convergence criteria for the gradient ascent to maximize the log of the evidence. <br /></td></tr>
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-real(rprec), dimension(max_gaussprocess)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5242d2d8ea000f7202563cabc5739971">v3fit_input::gp_cholesky_fact</a> = 0.0</td></tr>
-<tr class="memdesc:a5242d2d8ea000f7202563cabc5739971"><td class="mdescLeft">&#160;</td><td class="mdescRight">The Gaussian process uses a cholesky decompositions to factor a matrix. It assumes that the matrix is positive def. Which is true analytically. This input can be used to add a small offset to the matrix to insure positive def. <br /></td></tr>
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-character(len=data_short_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a90fc95d90dface3a816634e091b7d0c3">v3fit_input::int_method</a> = 'add'</td></tr>
-<tr class="memdesc:a90fc95d90dface3a816634e091b7d0c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integation method. The evaultion the K_LL matrix can require multipe evaluation of a double path integral. Here naive quadrature using rectangle integration with small dx can really slow down v3fit. It is recommended to use the <code>'gleg'</code> method when using the guassian processes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a1b604b7bf86240e95222db1c854b0aee">v3fit_input::int_num_points</a> = 40</td></tr>
-<tr class="memdesc:a1b604b7bf86240e95222db1c854b0aee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integer control of numerical quadrature. For Gauss-legendre integration This parameter sets the number of nodes to use. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a21885f2c19e871826a9de0b86409479a">v3fit_input::int_size</a> = 0.0025</td></tr>
-<tr class="memdesc:a21885f2c19e871826a9de0b86409479a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Real control of numerical quadrature. Set dx for addivative integration. <br /></td></tr>
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-<tr class="memitem:a5d7e1c2eb69778d16585b8f80c0b8099"><td class="memItemLeft" align="right" valign="top"><a id="a5d7e1c2eb69778d16585b8f80c0b8099"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a5d7e1c2eb69778d16585b8f80c0b8099">v3fit_input::phi_offset</a> = 0</td></tr>
-<tr class="memdesc:a5d7e1c2eb69778d16585b8f80c0b8099"><td class="mdescLeft">&#160;</td><td class="mdescRight">Offset of plasma relative to the diagnostics. <br /></td></tr>
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-<tr class="memitem:a741b415bdd48f62e633f18edcfba4767"><td class="memItemLeft" align="right" valign="top"><a id="a741b415bdd48f62e633f18edcfba4767"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a741b415bdd48f62e633f18edcfba4767">v3fit_input::z_offset</a> = 0</td></tr>
-<tr class="memdesc:a741b415bdd48f62e633f18edcfba4767"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vertical shift of plasma relative to the center. <br /></td></tr>
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-<tr class="memitem:adc0364b9f818950f73a6812862c2eb9c"><td class="memItemLeft" align="right" valign="top"><a id="adc0364b9f818950f73a6812862c2eb9c"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#adc0364b9f818950f73a6812862c2eb9c">v3fit_input::nrstep</a> = 0</td></tr>
-<tr class="memdesc:adc0364b9f818950f73a6812862c2eb9c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Max number of reconstruction steps to perform. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a700dd5e62d58718bb23610ebd31e52d2">v3fit_input::dg2_stop</a> = 0.0</td></tr>
-<tr class="memdesc:a700dd5e62d58718bb23610ebd31e52d2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stopping criterion on change in g^2. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad98c066d04c0f25696a91fed7d54e8ef">v3fit_input::cut_svd</a> = 0.0</td></tr>
-<tr class="memdesc:ad98c066d04c0f25696a91fed7d54e8ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for relative Singular Values. <br /></td></tr>
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-<tr class="memitem:a46af949ef5d76853b993d99767e542f1"><td class="memItemLeft" align="right" valign="top"><a id="a46af949ef5d76853b993d99767e542f1"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a46af949ef5d76853b993d99767e542f1">v3fit_input::cut_eff</a> = 0.0</td></tr>
-<tr class="memdesc:a46af949ef5d76853b993d99767e542f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected step efficiency. <br /></td></tr>
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-<tr class="memitem:a403d25aae2bd98397290ca374a793c95"><td class="memItemLeft" align="right" valign="top"><a id="a403d25aae2bd98397290ca374a793c95"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a403d25aae2bd98397290ca374a793c95">v3fit_input::cut_marg_eff</a> = 0.0</td></tr>
-<tr class="memdesc:a403d25aae2bd98397290ca374a793c95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected marginal step efficiency. <br /></td></tr>
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-<tr class="memitem:a8aa4f835a2cf486c7567dacbc42da314"><td class="memItemLeft" align="right" valign="top"><a id="a8aa4f835a2cf486c7567dacbc42da314"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#a8aa4f835a2cf486c7567dacbc42da314">v3fit_input::cut_delta_a</a> = 0.0</td></tr>
-<tr class="memdesc:a8aa4f835a2cf486c7567dacbc42da314"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected step size. <br /></td></tr>
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-<tr class="memitem:ab1dc0a024974864d287c68ebd3fa4dcb"><td class="memItemLeft" align="right" valign="top"><a id="ab1dc0a024974864d287c68ebd3fa4dcb"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ab1dc0a024974864d287c68ebd3fa4dcb">v3fit_input::cut_dg2</a> = 0.0</td></tr>
-<tr class="memdesc:ab1dc0a024974864d287c68ebd3fa4dcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for expected change in g^2. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#acb9417098adb81002267eb6a99f64562">v3fit_input::astep_max</a> = 0.0</td></tr>
-<tr class="memdesc:acb9417098adb81002267eb6a99f64562"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum allowable normalized step size. <br /></td></tr>
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-<tr class="memitem:ae73b0d72db753653fa16e592cf956876"><td class="memItemLeft" align="right" valign="top">character(len=v3fit_step_name_length)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">v3fit_input::step_type</a> = 'sl'</td></tr>
-<tr class="memdesc:ae73b0d72db753653fa16e592cf956876"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reconstruction step type. Possible values are:  <a href="namespacev3fit__input.html#ae73b0d72db753653fa16e592cf956876">More...</a><br /></td></tr>
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-<tr class="memitem:a1f1769a20f19cc5bf06fc7384326f65b"><td class="memItemLeft" align="right" valign="top"><a id="a1f1769a20f19cc5bf06fc7384326f65b"></a>
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-<tr class="memdesc:a1f1769a20f19cc5bf06fc7384326f65b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for singular values in matrix inverse. <br /></td></tr>
-<tr class="separator:a1f1769a20f19cc5bf06fc7384326f65b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ad9aa4c21ac7f427d6467bea2c0d492dd">v3fit_input::cut_comp_svd</a> = 0.0</td></tr>
-<tr class="memdesc:ad9aa4c21ac7f427d6467bea2c0d492dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cutoff value for singular values used in the magnetic data compression. <br /></td></tr>
-<tr class="separator:ad9aa4c21ac7f427d6467bea2c0d492dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__input.html#ac89fb702d3a90ee7b9b20159ed912d82">v3fit_input::use_central_diff</a> = .false.</td></tr>
-<tr class="memdesc:ac89fb702d3a90ee7b9b20159ed912d82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use central differencing to compute the jacobian. <br /></td></tr>
-<tr class="separator:ac89fb702d3a90ee7b9b20159ed912d82"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a3516a594cb5e51020f4aa30ef8e20aa4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Zero out vmec xcdot array.  <a href="namespacev3fit__input.html#a3516a594cb5e51020f4aa30ef8e20aa4">More...</a><br /></td></tr>
-<tr class="separator:a3516a594cb5e51020f4aa30ef8e20aa4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacev3fit__input.html">v3fit_input</a>. </p>
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-<p>Contains module <a class="el" href="namespacev3fit__params.html">v3fit_params</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__recon__class.html">v3fit_params::param_recon_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class to hold variables needed when a parameter is a reconstruction parameter.  <a href="structv3fit__params_1_1param__recon__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__locking__class.html">v3fit_params::param_locking_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class to hold variables needed when a parameter is a locking parameter. The locking parameter coefficents are stored in the correlation array of the parent type.  <a href="structv3fit__params_1_1param__locking__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__class.html">v3fit_params::param_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3fit__params_1_1param__pointer.html">v3fit_params::param_pointer</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacev3fit__params_1_1param__construct.html">v3fit_params::param_construct</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a34e266194d23bfa72b7a615919920eb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a34e266194d23bfa72b7a615919920eb6">More...</a><br /></td></tr>
-<tr class="separator:a34e266194d23bfa72b7a615919920eb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:accfafa5d3c887d5b717c7f6587782ce5"><td class="memItemLeft" align="right" valign="top">type(param_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#accfafa5d3c887d5b717c7f6587782ce5">v3fit_params::param_construct_recon</a> (a_model, param_name, indices, vrnc, range_type, range_indices, range_value, num_signals, num_params)</td></tr>
-<tr class="memdesc:accfafa5d3c887d5b717c7f6587782ce5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#accfafa5d3c887d5b717c7f6587782ce5">More...</a><br /></td></tr>
-<tr class="separator:accfafa5d3c887d5b717c7f6587782ce5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5a9d876598261d7a0abfafb748b70bd4"><td class="memItemLeft" align="right" valign="top">type(param_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a5a9d876598261d7a0abfafb748b70bd4">v3fit_params::param_construct_locking</a> (a_model, param_name, indices, set, set_indices, set_coeff, eq_comm)</td></tr>
-<tr class="memdesc:a5a9d876598261d7a0abfafb748b70bd4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a5a9d876598261d7a0abfafb748b70bd4">More...</a><br /></td></tr>
-<tr class="separator:a5a9d876598261d7a0abfafb748b70bd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a70ed70103621610c311a387475fcf7db"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a70ed70103621610c311a387475fcf7db">v3fit_params::param_destruct</a> (this)</td></tr>
-<tr class="memdesc:a70ed70103621610c311a387475fcf7db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structv3fit__params_1_1param__class.html">param_class</a> object.  <a href="namespacev3fit__params.html#a70ed70103621610c311a387475fcf7db">More...</a><br /></td></tr>
-<tr class="separator:a70ed70103621610c311a387475fcf7db"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a4f0815c66516006aa28a94e06b322d05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameter value.  <a href="namespacev3fit__params.html#a4f0815c66516006aa28a94e06b322d05">More...</a><br /></td></tr>
-<tr class="separator:a4f0815c66516006aa28a94e06b322d05"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a34a6dd1a05a79379169024dd7b51f725"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a34a6dd1a05a79379169024dd7b51f725">v3fit_params::param_set_lock_value</a> (this, a_model, eq_comm)</td></tr>
-<tr class="memdesc:a34a6dd1a05a79379169024dd7b51f725"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the locking parameter value.  <a href="namespacev3fit__params.html#a34a6dd1a05a79379169024dd7b51f725">More...</a><br /></td></tr>
-<tr class="separator:a34a6dd1a05a79379169024dd7b51f725"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab3291769ed406ce40b0d829782805cab"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">v3fit_params::param_get_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:ab3291769ed406ce40b0d829782805cab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the parameter value.  <a href="namespacev3fit__params.html#ab3291769ed406ce40b0d829782805cab">More...</a><br /></td></tr>
-<tr class="separator:ab3291769ed406ce40b0d829782805cab"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afc9ec375d981bab4c42eee4196d7aecb"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">v3fit_params::param_get_name</a> (this, a_model)</td></tr>
-<tr class="memdesc:afc9ec375d981bab4c42eee4196d7aecb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the parameter name.  <a href="namespacev3fit__params.html#afc9ec375d981bab4c42eee4196d7aecb">More...</a><br /></td></tr>
-<tr class="separator:afc9ec375d981bab4c42eee4196d7aecb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a8e2a1ae7e7d8bd91e192b32ea8b198f6">v3fit_params::param_get_lower_range_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the lower boundary value.  <a href="namespacev3fit__params.html#a8e2a1ae7e7d8bd91e192b32ea8b198f6">More...</a><br /></td></tr>
-<tr class="separator:a8e2a1ae7e7d8bd91e192b32ea8b198f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5a3abbc0abdc4fda6169163295adc8a9"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a5a3abbc0abdc4fda6169163295adc8a9">v3fit_params::param_get_upper_range_value</a> (this, a_model)</td></tr>
-<tr class="memdesc:a5a3abbc0abdc4fda6169163295adc8a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the upper boundary value.  <a href="namespacev3fit__params.html#a5a3abbc0abdc4fda6169163295adc8a9">More...</a><br /></td></tr>
-<tr class="separator:a5a3abbc0abdc4fda6169163295adc8a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a73dff4d4c5afd66a0af37c4720f7390a"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a73dff4d4c5afd66a0af37c4720f7390a">v3fit_params::param_get_lower_range_type</a> (this, a_model)</td></tr>
-<tr class="memdesc:a73dff4d4c5afd66a0af37c4720f7390a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the lower boundary type description.  <a href="namespacev3fit__params.html#a73dff4d4c5afd66a0af37c4720f7390a">More...</a><br /></td></tr>
-<tr class="separator:a73dff4d4c5afd66a0af37c4720f7390a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af64d93472b5b55696c1a5ae3bccb5485"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#af64d93472b5b55696c1a5ae3bccb5485">v3fit_params::param_get_upper_range_type</a> (this, a_model)</td></tr>
-<tr class="memdesc:af64d93472b5b55696c1a5ae3bccb5485"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the upper boundary type description.  <a href="namespacev3fit__params.html#af64d93472b5b55696c1a5ae3bccb5485">More...</a><br /></td></tr>
-<tr class="separator:af64d93472b5b55696c1a5ae3bccb5485"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad93a7074ca8997d27f6553a177239524"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ad93a7074ca8997d27f6553a177239524">v3fit_params::param_is_in_lower_range</a> (this, a_model, value)</td></tr>
-<tr class="memdesc:ad93a7074ca8997d27f6553a177239524"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the value is in the lower range.  <a href="namespacev3fit__params.html#ad93a7074ca8997d27f6553a177239524">More...</a><br /></td></tr>
-<tr class="separator:ad93a7074ca8997d27f6553a177239524"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abecde14d0aadfd2297edbc2419e49a4a"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#abecde14d0aadfd2297edbc2419e49a4a">v3fit_params::param_is_in_upper_range</a> (this, a_model, value)</td></tr>
-<tr class="memdesc:abecde14d0aadfd2297edbc2419e49a4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the value is in the upper range.  <a href="namespacev3fit__params.html#abecde14d0aadfd2297edbc2419e49a4a">More...</a><br /></td></tr>
-<tr class="separator:abecde14d0aadfd2297edbc2419e49a4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6bdfb0b942285942e55bc20f958ead56"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a6bdfb0b942285942e55bc20f958ead56">v3fit_params::param_increment</a> (this, a_model, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a6bdfb0b942285942e55bc20f958ead56"><td class="mdescLeft">&#160;</td><td class="mdescRight">Increments the parameter value.  <a href="namespacev3fit__params.html#a6bdfb0b942285942e55bc20f958ead56">More...</a><br /></td></tr>
-<tr class="separator:a6bdfb0b942285942e55bc20f958ead56"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a49667f7fd107c9a891fef71f80b19865"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a49667f7fd107c9a891fef71f80b19865">v3fit_params::param_decrement</a> (this, a_model, eq_comm)</td></tr>
-<tr class="memdesc:a49667f7fd107c9a891fef71f80b19865"><td class="mdescLeft">&#160;</td><td class="mdescRight">Decrements the parameter value.  <a href="namespacev3fit__params.html#a49667f7fd107c9a891fef71f80b19865">More...</a><br /></td></tr>
-<tr class="separator:a49667f7fd107c9a891fef71f80b19865"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac18b6e97dbb78fba12fc66b94e001655"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ac18b6e97dbb78fba12fc66b94e001655">v3fit_params::param_write</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:ac18b6e97dbb78fba12fc66b94e001655"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter to an output file.  <a href="namespacev3fit__params.html#ac18b6e97dbb78fba12fc66b94e001655">More...</a><br /></td></tr>
-<tr class="separator:ac18b6e97dbb78fba12fc66b94e001655"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a914df41c608427e1257503dd347255fb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a914df41c608427e1257503dd347255fb">v3fit_params::param_write_short</a> (this, iou, index, a_model)</td></tr>
-<tr class="memdesc:a914df41c608427e1257503dd347255fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter to an output file.  <a href="namespacev3fit__params.html#a914df41c608427e1257503dd347255fb">More...</a><br /></td></tr>
-<tr class="separator:a914df41c608427e1257503dd347255fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad934796db46bae3b80895d61c688f9f0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ad934796db46bae3b80895d61c688f9f0">v3fit_params::param_write_header</a> (iou)</td></tr>
-<tr class="memdesc:ad934796db46bae3b80895d61c688f9f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out parameter header information to an output file.  <a href="namespacev3fit__params.html#ad934796db46bae3b80895d61c688f9f0">More...</a><br /></td></tr>
-<tr class="separator:ad934796db46bae3b80895d61c688f9f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#af5cfe9e4aed01f4358cf7bc6a471cc55">v3fit_params::param_write_header_short</a> (iou)</td></tr>
-<tr class="memdesc:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out parameter header information to an output file.  <a href="namespacev3fit__params.html#af5cfe9e4aed01f4358cf7bc6a471cc55">More...</a><br /></td></tr>
-<tr class="separator:af5cfe9e4aed01f4358cf7bc6a471cc55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab8812aa6b828e6439b8079a5619d6c55"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ab8812aa6b828e6439b8079a5619d6c55">v3fit_params::param_write_correlation</a> (this, iou, a_model)</td></tr>
-<tr class="memdesc:ab8812aa6b828e6439b8079a5619d6c55"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes out a parameter covariance matrix row.  <a href="namespacev3fit__params.html#ab8812aa6b828e6439b8079a5619d6c55">More...</a><br /></td></tr>
-<tr class="separator:ab8812aa6b828e6439b8079a5619d6c55"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2a907c3cded3e40bd23ee7577219ab75"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a2a907c3cded3e40bd23ee7577219ab75">v3fit_params::param_write_step_data_1</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id, param_sem_id)</td></tr>
-<tr class="memdesc:a2a907c3cded3e40bd23ee7577219ab75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="namespacev3fit__params.html#a2a907c3cded3e40bd23ee7577219ab75">More...</a><br /></td></tr>
-<tr class="separator:a2a907c3cded3e40bd23ee7577219ab75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3c277740e1c647f20b17e48cadf658b9"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a3c277740e1c647f20b17e48cadf658b9">v3fit_params::param_write_step_data_2</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id)</td></tr>
-<tr class="memdesc:a3c277740e1c647f20b17e48cadf658b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the parameter data for a step to the result netcdf file.  <a href="namespacev3fit__params.html#a3c277740e1c647f20b17e48cadf658b9">More...</a><br /></td></tr>
-<tr class="separator:a3c277740e1c647f20b17e48cadf658b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a2270758b69ee03d9d5bf0c1d9db1814e">v3fit_params::param_restart</a> (this, a_model, result_ncid, current_step, index, param_value_id, param_sigma_id, param_corr_id, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart the parameter.  <a href="namespacev3fit__params.html#a2270758b69ee03d9d5bf0c1d9db1814e">More...</a><br /></td></tr>
-<tr class="separator:a2270758b69ee03d9d5bf0c1d9db1814e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca97eb081da6b2eb398caecac155a492"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aca97eb081da6b2eb398caecac155a492">v3fit_params::param_sync_value</a> (this, a_model, recon_comm, eq_comm, is_central)</td></tr>
-<tr class="memdesc:aca97eb081da6b2eb398caecac155a492"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the param value to children.  <a href="namespacev3fit__params.html#aca97eb081da6b2eb398caecac155a492">More...</a><br /></td></tr>
-<tr class="separator:aca97eb081da6b2eb398caecac155a492"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6b0bf1537519a547895781151859f3a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a6b0bf1537519a547895781151859f3a6">v3fit_params::param_send_delta</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:a6b0bf1537519a547895781151859f3a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sends the delta used.  <a href="namespacev3fit__params.html#a6b0bf1537519a547895781151859f3a6">More...</a><br /></td></tr>
-<tr class="separator:a6b0bf1537519a547895781151859f3a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#afae8b3100b6ef5d21ae7bb20dc54e6e0">v3fit_params::param_recv_delta</a> (this, index, recon_comm)</td></tr>
-<tr class="memdesc:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Receives the delta used.  <a href="namespacev3fit__params.html#afae8b3100b6ef5d21ae7bb20dc54e6e0">More...</a><br /></td></tr>
-<tr class="separator:afae8b3100b6ef5d21ae7bb20dc54e6e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a40a14269e648de4cb9b2cbe4e1a3542e">v3fit_params::param_sync_delta</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync the delta used.  <a href="namespacev3fit__params.html#a40a14269e648de4cb9b2cbe4e1a3542e">More...</a><br /></td></tr>
-<tr class="separator:a40a14269e648de4cb9b2cbe4e1a3542e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a58a43e136623f6eb084ad9672124eeda"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a58a43e136623f6eb084ad9672124eeda">v3fit_params::param_sync_child</a> (this, a_model, index, recon_comm, eq_comm, is_central)</td></tr>
-<tr class="memdesc:a58a43e136623f6eb084ad9672124eeda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sync the parameter value from a child to the parent.  <a href="namespacev3fit__params.html#a58a43e136623f6eb084ad9672124eeda">More...</a><br /></td></tr>
-<tr class="separator:a58a43e136623f6eb084ad9672124eeda"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
-<tr class="memitem:ae462e5b528d9d506896ef1c58a429fd9"><td class="memItemLeft" align="right" valign="top"><a id="ae462e5b528d9d506896ef1c58a429fd9"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#ae462e5b528d9d506896ef1c58a429fd9">v3fit_params::param_range_no_type</a> = -1</td></tr>
-<tr class="memdesc:ae462e5b528d9d506896ef1c58a429fd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">No bounding type specified. <br /></td></tr>
-<tr class="separator:ae462e5b528d9d506896ef1c58a429fd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8fb6a41420df6beab495bfe91ad7287"><td class="memItemLeft" align="right" valign="top"><a id="aa8fb6a41420df6beab495bfe91ad7287"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aa8fb6a41420df6beab495bfe91ad7287">v3fit_params::param_range_value_type</a> = 0</td></tr>
-<tr class="memdesc:aa8fb6a41420df6beab495bfe91ad7287"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is bounded by a value. <br /></td></tr>
-<tr class="separator:aa8fb6a41420df6beab495bfe91ad7287"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a065c409760b2feee997a7ff590d476ba"><td class="memItemLeft" align="right" valign="top"><a id="a065c409760b2feee997a7ff590d476ba"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a065c409760b2feee997a7ff590d476ba">v3fit_params::param_range_infinity_type</a> = 1</td></tr>
-<tr class="memdesc:a065c409760b2feee997a7ff590d476ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is unbounded. <br /></td></tr>
-<tr class="separator:a065c409760b2feee997a7ff590d476ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="memItemLeft" align="right" valign="top"><a id="a3356363a8a30a7c7fd8300cfb28c03b5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a3356363a8a30a7c7fd8300cfb28c03b5">v3fit_params::param_range_parameter_type</a> = 2</td></tr>
-<tr class="memdesc:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameter value is bounded by another parameter. <br /></td></tr>
-<tr class="separator:a3356363a8a30a7c7fd8300cfb28c03b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="memItemLeft" align="right" valign="top"><a id="aa44fbec314cdb6c9c5b1d4a1a492b8b2"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#aa44fbec314cdb6c9c5b1d4a1a492b8b2">v3fit_params::param_max_increment_steps</a> = 5</td></tr>
-<tr class="memdesc:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum number of attemps to change the parameter increment size. <br /></td></tr>
-<tr class="separator:aa44fbec314cdb6c9c5b1d4a1a492b8b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4837c38992a305cabe9f3859d7b55f1f"><td class="memItemLeft" align="right" valign="top"><a id="a4837c38992a305cabe9f3859d7b55f1f"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3fit__params.html#a4837c38992a305cabe9f3859d7b55f1f">v3fit_params::param_div_factor</a> = 10.0</td></tr>
-<tr class="memdesc:a4837c38992a305cabe9f3859d7b55f1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Division factor to decrease the step size. <br /></td></tr>
-<tr class="separator:a4837c38992a305cabe9f3859d7b55f1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacev3fit__params.html">v3fit_params</a>. </p>
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-<p>Contains the main routines for V3FIT.  
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-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a92499480850f3300c0f265efd3b83b1d"><td class="memItemLeft" align="right" valign="top">program&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a92499480850f3300c0f265efd3b83b1d">v3fit</a></td></tr>
-<tr class="memdesc:a92499480850f3300c0f265efd3b83b1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">V3FIT is a code for reconstructing 3D equilibria. V3FIT determined the optimal parameters of a 3D equilibrium by minimizing the missmatch between modeled and observed signals. V3FIT has been created with contributions from.  <a href="v3fita_8f.html#a92499480850f3300c0f265efd3b83b1d">More...</a><br /></td></tr>
-<tr class="separator:a92499480850f3300c0f265efd3b83b1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e252bf41cc3afea98fabd298633624a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a5e252bf41cc3afea98fabd298633624a">task_equilibrium</a> (context)</td></tr>
-<tr class="memdesc:a5e252bf41cc3afea98fabd298633624a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the equilibrium.  <a href="v3fita_8f.html#a5e252bf41cc3afea98fabd298633624a">More...</a><br /></td></tr>
-<tr class="separator:a5e252bf41cc3afea98fabd298633624a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6094918614520ec19fa43c2230ef24cb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a6094918614520ec19fa43c2230ef24cb">task_v3post</a> (context)</td></tr>
-<tr class="memdesc:a6094918614520ec19fa43c2230ef24cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the equilibrium and calculates the modeled signals.  <a href="v3fita_8f.html#a6094918614520ec19fa43c2230ef24cb">More...</a><br /></td></tr>
-<tr class="separator:a6094918614520ec19fa43c2230ef24cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9fcb1f733f13482d594e0dfe233a21eb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a9fcb1f733f13482d594e0dfe233a21eb">task_reconstruct</a> (context)</td></tr>
-<tr class="memdesc:a9fcb1f733f13482d594e0dfe233a21eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reconstructs the equilibrium.  <a href="v3fita_8f.html#a9fcb1f733f13482d594e0dfe233a21eb">More...</a><br /></td></tr>
-<tr class="separator:a9fcb1f733f13482d594e0dfe233a21eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a823ec4e714966958fecac5dcbe03e5d0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a823ec4e714966958fecac5dcbe03e5d0">task_child_recon</a> (context)</td></tr>
-<tr class="memdesc:a823ec4e714966958fecac5dcbe03e5d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child task to compute jacobian.  <a href="v3fita_8f.html#a823ec4e714966958fecac5dcbe03e5d0">More...</a><br /></td></tr>
-<tr class="separator:a823ec4e714966958fecac5dcbe03e5d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0cd21f4c3dba6a73ac5d4d778864a3ee"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a0cd21f4c3dba6a73ac5d4d778864a3ee">task_child_equilibrium</a> (context)</td></tr>
-<tr class="memdesc:a0cd21f4c3dba6a73ac5d4d778864a3ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child task to compute equilibrium.  <a href="v3fita_8f.html#a0cd21f4c3dba6a73ac5d4d778864a3ee">More...</a><br /></td></tr>
-<tr class="separator:a0cd21f4c3dba6a73ac5d4d778864a3ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa220b90206e630ac2976e3f7ad5e9315"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#aa220b90206e630ac2976e3f7ad5e9315">task_gsq_on_grid</a> (context)</td></tr>
-<tr class="memdesc:aa220b90206e630ac2976e3f7ad5e9315"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the g^2 value on a grid.  <a href="v3fita_8f.html#aa220b90206e630ac2976e3f7ad5e9315">More...</a><br /></td></tr>
-<tr class="separator:aa220b90206e630ac2976e3f7ad5e9315"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4ebe95c4aecd9fcd05033b53c61f2620"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a4ebe95c4aecd9fcd05033b53c61f2620">task_unit_tests</a></td></tr>
-<tr class="memdesc:a4ebe95c4aecd9fcd05033b53c61f2620"><td class="mdescLeft">&#160;</td><td class="mdescRight">Run unit tests.  <a href="v3fita_8f.html#a4ebe95c4aecd9fcd05033b53c61f2620">More...</a><br /></td></tr>
-<tr class="separator:a4ebe95c4aecd9fcd05033b53c61f2620"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2b78c5799a90818d923f8dec84287c73"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a2b78c5799a90818d923f8dec84287c73">init_equilibrium</a> (context)</td></tr>
-<tr class="memdesc:a2b78c5799a90818d923f8dec84287c73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize an equilibrium.  <a href="v3fita_8f.html#a2b78c5799a90818d923f8dec84287c73">More...</a><br /></td></tr>
-<tr class="separator:a2b78c5799a90818d923f8dec84287c73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af14dd47ec3266430a23c04a177674b4d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#af14dd47ec3266430a23c04a177674b4d">init_vmec_equilibrium</a> (context, force_solve)</td></tr>
-<tr class="memdesc:af14dd47ec3266430a23c04a177674b4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize a vmec equilibrium.  <a href="v3fita_8f.html#af14dd47ec3266430a23c04a177674b4d">More...</a><br /></td></tr>
-<tr class="separator:af14dd47ec3266430a23c04a177674b4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a395db315d887759079890318ee6a8773"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a395db315d887759079890318ee6a8773">init_vacuum_equilibrium</a> (context, force_solve)</td></tr>
-<tr class="memdesc:a395db315d887759079890318ee6a8773"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize a vacuum equilibrium.  <a href="v3fita_8f.html#a395db315d887759079890318ee6a8773">More...</a><br /></td></tr>
-<tr class="separator:a395db315d887759079890318ee6a8773"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a996093b7e385bb5138f0ab628008c8fa"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a996093b7e385bb5138f0ab628008c8fa">init_siesta_equilibrium</a> (context, force_solve)</td></tr>
-<tr class="memdesc:a996093b7e385bb5138f0ab628008c8fa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize a siests equilibrium.  <a href="v3fita_8f.html#a996093b7e385bb5138f0ab628008c8fa">More...</a><br /></td></tr>
-<tr class="separator:a996093b7e385bb5138f0ab628008c8fa"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa9eb2f654cc7e329bf8473c15476798b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#aa9eb2f654cc7e329bf8473c15476798b">init_signals</a> (context)</td></tr>
-<tr class="memdesc:aa9eb2f654cc7e329bf8473c15476798b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the <a class="el" href="namespacesignal.html">signal</a> array.  <a href="v3fita_8f.html#aa9eb2f654cc7e329bf8473c15476798b">More...</a><br /></td></tr>
-<tr class="separator:aa9eb2f654cc7e329bf8473c15476798b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6eea78c8a8afc9f48767639130262ed3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a6eea78c8a8afc9f48767639130262ed3">init_magnetic_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a6eea78c8a8afc9f48767639130262ed3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacemagnetic.html">magnetic</a> signals.  <a href="v3fita_8f.html#a6eea78c8a8afc9f48767639130262ed3">More...</a><br /></td></tr>
-<tr class="separator:a6eea78c8a8afc9f48767639130262ed3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45a3c83a6dcc5c8f5fd311b577ec7177"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a45a3c83a6dcc5c8f5fd311b577ec7177">init_sxrem_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a45a3c83a6dcc5c8f5fd311b577ec7177"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacesxrem.html">sxrem</a> signals.  <a href="v3fita_8f.html#a45a3c83a6dcc5c8f5fd311b577ec7177">More...</a><br /></td></tr>
-<tr class="separator:a45a3c83a6dcc5c8f5fd311b577ec7177"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a291e8736e1ef4672e2c1625ebab40f15"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a291e8736e1ef4672e2c1625ebab40f15">init_intpol_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a291e8736e1ef4672e2c1625ebab40f15"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespaceintpol.html">intpol</a> signals.  <a href="v3fita_8f.html#a291e8736e1ef4672e2c1625ebab40f15">More...</a><br /></td></tr>
-<tr class="separator:a291e8736e1ef4672e2c1625ebab40f15"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa4986f9dc6671f6e64dc3ff7ae0638b6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#aa4986f9dc6671f6e64dc3ff7ae0638b6">init_thomson_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:aa4986f9dc6671f6e64dc3ff7ae0638b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacethomson.html">thomson</a> signals.  <a href="v3fita_8f.html#aa4986f9dc6671f6e64dc3ff7ae0638b6">More...</a><br /></td></tr>
-<tr class="separator:aa4986f9dc6671f6e64dc3ff7ae0638b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d22f824b9dbf708b8b33d979ff71cd8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a7d22f824b9dbf708b8b33d979ff71cd8">init_extcurz_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a7d22f824b9dbf708b8b33d979ff71cd8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the <a class="el" href="namespaceextcurz.html">extcurz</a> signal.  <a href="v3fita_8f.html#a7d22f824b9dbf708b8b33d979ff71cd8">More...</a><br /></td></tr>
-<tr class="separator:a7d22f824b9dbf708b8b33d979ff71cd8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1e1d34e90d8fdbdacc52b30f5d4011c6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a1e1d34e90d8fdbdacc52b30f5d4011c6">init_mse_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a1e1d34e90d8fdbdacc52b30f5d4011c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacemse.html">mse</a> signals.  <a href="v3fita_8f.html#a1e1d34e90d8fdbdacc52b30f5d4011c6">More...</a><br /></td></tr>
-<tr class="separator:a1e1d34e90d8fdbdacc52b30f5d4011c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33225eaa9f4991197cb0a6e0e98bb006"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a33225eaa9f4991197cb0a6e0e98bb006">init_ece_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a33225eaa9f4991197cb0a6e0e98bb006"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespaceece.html">ece</a> signals.  <a href="v3fita_8f.html#a33225eaa9f4991197cb0a6e0e98bb006">More...</a><br /></td></tr>
-<tr class="separator:a33225eaa9f4991197cb0a6e0e98bb006"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adca3c5b7ecd91439050f33f36aba95d8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#adca3c5b7ecd91439050f33f36aba95d8">init_limiter_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:adca3c5b7ecd91439050f33f36aba95d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacelimiter.html">limiter</a> signals.  <a href="v3fita_8f.html#adca3c5b7ecd91439050f33f36aba95d8">More...</a><br /></td></tr>
-<tr class="separator:adca3c5b7ecd91439050f33f36aba95d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d51ce6718857f0d30b67e8858cc1b2c"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a5d51ce6718857f0d30b67e8858cc1b2c">init_prior_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a5d51ce6718857f0d30b67e8858cc1b2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs prior signals.  <a href="v3fita_8f.html#a5d51ce6718857f0d30b67e8858cc1b2c">More...</a><br /></td></tr>
-<tr class="separator:a5d51ce6718857f0d30b67e8858cc1b2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a18fac7ac5270878f78fe645b4e821bc8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a18fac7ac5270878f78fe645b4e821bc8">init_sxrem_ratio_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:a18fac7ac5270878f78fe645b4e821bc8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs <a class="el" href="namespacesxrem__ratio.html">sxrem_ratio</a> signals.  <a href="v3fita_8f.html#a18fac7ac5270878f78fe645b4e821bc8">More...</a><br /></td></tr>
-<tr class="separator:a18fac7ac5270878f78fe645b4e821bc8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad93cd3ffa7b89476b1adfb684db072a6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#ad93cd3ffa7b89476b1adfb684db072a6">init_combination_signals</a> (context, signals_created)</td></tr>
-<tr class="memdesc:ad93cd3ffa7b89476b1adfb684db072a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs signal::combination_class signals.  <a href="v3fita_8f.html#ad93cd3ffa7b89476b1adfb684db072a6">More...</a><br /></td></tr>
-<tr class="separator:ad93cd3ffa7b89476b1adfb684db072a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4f2eaef651191c3b99fd303a30792dda"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a4f2eaef651191c3b99fd303a30792dda">init_parameters</a> (context)</td></tr>
-<tr class="memdesc:a4f2eaef651191c3b99fd303a30792dda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#ada624875ff6766d01b4064d4fc85a7d0">v3fit_context::v3fit_context_class::params</a> array.  <a href="v3fita_8f.html#a4f2eaef651191c3b99fd303a30792dda">More...</a><br /></td></tr>
-<tr class="separator:a4f2eaef651191c3b99fd303a30792dda"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:acb4b3f0890acb1b3c17c5c92c6e284e7"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#acb4b3f0890acb1b3c17c5c92c6e284e7">init_gaussian_process</a> (context)</td></tr>
-<tr class="memdesc:acb4b3f0890acb1b3c17c5c92c6e284e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a3ae2a613f88d6073f1640a2ea96446cb">v3fit_context::v3fit_context_class::gp</a> array.  <a href="v3fita_8f.html#acb4b3f0890acb1b3c17c5c92c6e284e7">More...</a><br /></td></tr>
-<tr class="separator:acb4b3f0890acb1b3c17c5c92c6e284e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a67671be7bf92f6d19aa4e4dec909d4cb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#a67671be7bf92f6d19aa4e4dec909d4cb">init_reconstruction</a> (context)</td></tr>
-<tr class="memdesc:a67671be7bf92f6d19aa4e4dec909d4cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initialize Reconstruction.  <a href="v3fita_8f.html#a67671be7bf92f6d19aa4e4dec909d4cb">More...</a><br /></td></tr>
-<tr class="separator:a67671be7bf92f6d19aa4e4dec909d4cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab2212ac7f97509b7784257b5afa4ffd2"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#ab2212ac7f97509b7784257b5afa4ffd2">config_parallelism</a> (context)</td></tr>
-<tr class="memdesc:ab2212ac7f97509b7784257b5afa4ffd2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Configure Parallelism.  <a href="v3fita_8f.html#ab2212ac7f97509b7784257b5afa4ffd2">More...</a><br /></td></tr>
-<tr class="separator:ab2212ac7f97509b7784257b5afa4ffd2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aefdae3f839844539491f11571c279de6"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3fita_8f.html#aefdae3f839844539491f11571c279de6">cleanup_parallelism</a> (context)</td></tr>
-<tr class="memdesc:aefdae3f839844539491f11571c279de6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cleanup Parallelism.  <a href="v3fita_8f.html#aefdae3f839844539491f11571c279de6">More...</a><br /></td></tr>
-<tr class="separator:aefdae3f839844539491f11571c279de6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains the main routines for V3FIT. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="aefdae3f839844539491f11571c279de6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aefdae3f839844539491f11571c279de6">&#9670;&nbsp;</a></span>cleanup_parallelism()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine cleanup_parallelism </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Cleanup Parallelism. </p>
-<p>Cleans up resources needed for parallelism.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ab2212ac7f97509b7784257b5afa4ffd2"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ab2212ac7f97509b7784257b5afa4ffd2">&#9670;&nbsp;</a></span>config_parallelism()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine config_parallelism </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Configure Parallelism. </p>
-<p>When using OpenMP, this sets the maximum number of threads to use. Threads operate within a process and share memory with the main thread. With in parallel constructs, it's important to ensure that all code is thread safe to avoid unexpected behavior and race conditions. The maximum number of threads is controled using the <code>-para</code> command line argument. An argument of a negative values specifies to use the default behavior.</p>
-<p>When using MPI, this sets and configures the processes. A unique directory needs to be generated for each process to avoid overwriting output files.</p>
-<p>The default way is to create and distribute the threads externally. In this case, the number of processes is fixed. Each process will need to be reassigned a working directory. One process will be used like a parent process. The remaining processed will be retasked as child processes.</p>
-<p>The second way is to spawn sub processes from a single parent process. In this case, the parent process will spawn subprocesses to operate the child task in a sub directory. The number of sub processes can be configured automatically or manually. </p><dl class="section see"><dt>See also</dt><dd>cl_parsing_sec</dd></dl>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="ad93cd3ffa7b89476b1adfb684db072a6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ad93cd3ffa7b89476b1adfb684db072a6">&#9670;&nbsp;</a></span>init_combination_signals()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine init_combination_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs signal::combination_class signals. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a33225eaa9f4991197cb0a6e0e98bb006"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a33225eaa9f4991197cb0a6e0e98bb006">&#9670;&nbsp;</a></span>init_ece_signals()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine init_ece_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs <a class="el" href="namespaceece.html">ece</a> signals. </p>
-<p>This constructs all <a class="el" href="namespaceece.html">ece</a> signals from the specified <a class="el" href="namespacev3fit__input.html#af786af93e310aa065e95b891ae9cb5ab">v3fit_input::ece_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a2b78c5799a90818d923f8dec84287c73"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a2b78c5799a90818d923f8dec84287c73">&#9670;&nbsp;</a></span>init_equilibrium()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine init_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize an equilibrium. </p>
-<p>This constructs and initializes an equilibrium. Currently only vmec_equilibium, vacuum_equilibium and siesta_equilibium are supported.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a7d22f824b9dbf708b8b33d979ff71cd8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a7d22f824b9dbf708b8b33d979ff71cd8">&#9670;&nbsp;</a></span>init_extcurz_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">subroutine init_extcurz_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs the <a class="el" href="namespaceextcurz.html">extcurz</a> signal. </p>
-<p>This constructs the extcurz signal from <a class="el" href="namespacev3fit__input.html#a11987511aea794ac429ac277a0e5ea9d">v3fit_input::extcurz_s0</a> and <a class="el" href="namespacev3fit__input.html#a555584a3df19eb60f116d9f7a9bc4211">v3fit_input::extcurz_u0</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="acb4b3f0890acb1b3c17c5c92c6e284e7"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#acb4b3f0890acb1b3c17c5c92c6e284e7">&#9670;&nbsp;</a></span>init_gaussian_process()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine init_gaussian_process </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a3ae2a613f88d6073f1640a2ea96446cb">v3fit_context::v3fit_context_class::gp</a> array. </p>
-<p>This constructs all reconstruction <a class="el" href="structguassian__process_1_1gaussp__class.html">guassian_process::gaussp_class</a> objects.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a291e8736e1ef4672e2c1625ebab40f15"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a291e8736e1ef4672e2c1625ebab40f15">&#9670;&nbsp;</a></span>init_intpol_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine init_intpol_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs <a class="el" href="namespaceintpol.html">intpol</a> signals. </p>
-<p>This constructs all <a class="el" href="namespaceintpol.html">intpol</a> signals from the specified <a class="el" href="namespacev3fit__input.html#ae1fe6c8994f39bfe0b7a5b2a576fccdb">v3fit_input::ipch_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="adca3c5b7ecd91439050f33f36aba95d8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#adca3c5b7ecd91439050f33f36aba95d8">&#9670;&nbsp;</a></span>init_limiter_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">subroutine init_limiter_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs <a class="el" href="namespacelimiter.html">limiter</a> signals. </p>
-<p>Constructs all iso and grid based limiters.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a6eea78c8a8afc9f48767639130262ed3"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6eea78c8a8afc9f48767639130262ed3">&#9670;&nbsp;</a></span>init_magnetic_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine init_magnetic_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs <a class="el" href="namespacemagnetic.html">magnetic</a> signals. </p>
-<p>This constructs all <a class="el" href="namespacemagnetic.html">magnetic</a> signals from the specified <a class="el" href="namespacev3fit__input.html#a996b17010c59ba9bcccf546b259fbcc9">v3fit_input::mdsig_list_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a1e1d34e90d8fdbdacc52b30f5d4011c6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a1e1d34e90d8fdbdacc52b30f5d4011c6">&#9670;&nbsp;</a></span>init_mse_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
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-          <td class="memname">subroutine init_mse_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
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-<p>Constructs <a class="el" href="namespacemse.html">mse</a> signals. </p>
-<p>This constructs all <a class="el" href="namespacemse.html">mse</a> signals from the specified <a class="el" href="namespacev3fit__input.html#a21c831b5d3eb6144de874851c67e9f93">v3fit_input::mse_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a4f2eaef651191c3b99fd303a30792dda"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4f2eaef651191c3b99fd303a30792dda">&#9670;&nbsp;</a></span>init_parameters()</h2>
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-<div class="memitem">
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-          <td class="memname">subroutine init_parameters </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs the <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#ada624875ff6766d01b4064d4fc85a7d0">v3fit_context::v3fit_context_class::params</a> array. </p>
-<p>This constructs all reconstruction <a class="el" href="structv3fit__params_1_1param__class.html">v3fit_params::param_class</a> and derived <a class="el" href="structv3fit__params_1_1param__class.html">v3fit_params::param_class</a> objects.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5d51ce6718857f0d30b67e8858cc1b2c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5d51ce6718857f0d30b67e8858cc1b2c">&#9670;&nbsp;</a></span>init_prior_signals()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_prior_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs prior signals. </p>
-<p>For now only <a class="el" href="namespaceprior__gaussian.html">prior_gaussian</a> signals are constructed.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a67671be7bf92f6d19aa4e4dec909d4cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a67671be7bf92f6d19aa4e4dec909d4cb">&#9670;&nbsp;</a></span>init_reconstruction()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_reconstruction </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize Reconstruction. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a996093b7e385bb5138f0ab628008c8fa"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a996093b7e385bb5138f0ab628008c8fa">&#9670;&nbsp;</a></span>init_siesta_equilibrium()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_siesta_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize a siests equilibrium. </p>
-<p>This constructs and initializes a <a class="el" href="namespacesiesta__equilibrium.html">siesta_equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa9eb2f654cc7e329bf8473c15476798b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa9eb2f654cc7e329bf8473c15476798b">&#9670;&nbsp;</a></span>init_signals()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs the <a class="el" href="namespacesignal.html">signal</a> array. </p>
-<p>This constructs all <a class="el" href="structv3fit__context_1_1v3fit__context__class.html#a40c8a67405aa0f88675d619ea0c763ed">v3fit_context::v3fit_context_class::signals</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a18fac7ac5270878f78fe645b4e821bc8"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a18fac7ac5270878f78fe645b4e821bc8">&#9670;&nbsp;</a></span>init_sxrem_ratio_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_sxrem_ratio_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs <a class="el" href="namespacesxrem__ratio.html">sxrem_ratio</a> signals. </p>
-<p>This constructs all <a class="el" href="namespacesxrem__ratio.html">sxrem_ratio</a> signals from the specified <a class="el" href="namespacev3fit__input.html#ab1c443867144c97b12aaafbee516fad4">v3fit_input::sxrem_ratio_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a45a3c83a6dcc5c8f5fd311b577ec7177"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a45a3c83a6dcc5c8f5fd311b577ec7177">&#9670;&nbsp;</a></span>init_sxrem_signals()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_sxrem_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs <a class="el" href="namespacesxrem.html">sxrem</a> signals. </p>
-<p>This constructs all <a class="el" href="namespacesxrem.html">sxrem</a> signals from the specified <a class="el" href="namespacev3fit__input.html#a72d9b20480f9377f4ebc813caa9c4fda">v3fit_input::sxrch_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa4986f9dc6671f6e64dc3ff7ae0638b6"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa4986f9dc6671f6e64dc3ff7ae0638b6">&#9670;&nbsp;</a></span>init_thomson_signals()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_thomson_signals </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">integer, intent(inout)&#160;</td>
-          <td class="paramname"><em>signals_created</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Constructs <a class="el" href="namespacethomson.html">thomson</a> signals. </p>
-<p>This constructs all <a class="el" href="namespacethomson.html">thomson</a> signals from the specified <a class="el" href="namespacev3fit__input.html#a44c3bf45a946bb5583996a47eab2e1c7">v3fit_input::thscte_dot_filename</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">signals_created</td><td>Count of the current number of signals constructed. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a395db315d887759079890318ee6a8773"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a395db315d887759079890318ee6a8773">&#9670;&nbsp;</a></span>init_vacuum_equilibrium()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_vacuum_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize a vacuum equilibrium. </p>
-<p>This constructs and initializes a <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="af14dd47ec3266430a23c04a177674b4d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af14dd47ec3266430a23c04a177674b4d">&#9670;&nbsp;</a></span>init_vmec_equilibrium()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine init_vmec_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">logical, intent(in)&#160;</td>
-          <td class="paramname"><em>force_solve</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Initialize a vmec equilibrium. </p>
-<p>This constructs and initializes a <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">force_solve</td><td>If true, forces the equilbirum to resolve every time. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a0cd21f4c3dba6a73ac5d4d778864a3ee"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a0cd21f4c3dba6a73ac5d4d778864a3ee">&#9670;&nbsp;</a></span>task_child_equilibrium()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine task_child_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Child task to compute equilibrium. </p>
-<p>Task to compute the equilibrium in a sub process for parallelism.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a823ec4e714966958fecac5dcbe03e5d0"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a823ec4e714966958fecac5dcbe03e5d0">&#9670;&nbsp;</a></span>task_child_recon()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine task_child_recon </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Child task to compute jacobian. </p>
-<p>Task to compute the jacobian in a sub process for parallelism.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a5e252bf41cc3afea98fabd298633624a"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a5e252bf41cc3afea98fabd298633624a">&#9670;&nbsp;</a></span>task_equilibrium()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine task_equilibrium </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the equilibrium. </p>
-<p>Task to just solve the equilibrium. This task is choosen by setting <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> to 'equilibrium'.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="aa220b90206e630ac2976e3f7ad5e9315"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#aa220b90206e630ac2976e3f7ad5e9315">&#9670;&nbsp;</a></span>task_gsq_on_grid()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine task_gsq_on_grid </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Computes the g^2 value on a grid. </p>
-<p>Task to map out the chi^2 over a range of reconstruction parameters. This task is choosen by setting <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> to 'gsq_on_grid'.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a9fcb1f733f13482d594e0dfe233a21eb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9fcb1f733f13482d594e0dfe233a21eb">&#9670;&nbsp;</a></span>task_reconstruct()</h2>
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-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">subroutine task_reconstruct </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Reconstructs the equilibrium. </p>
-<p>Task to perform an equilibrium reconstruction. This task is choosen by setting <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> to 'reconstruct'.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<a id="a4ebe95c4aecd9fcd05033b53c61f2620"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a4ebe95c4aecd9fcd05033b53c61f2620">&#9670;&nbsp;</a></span>task_unit_tests()</h2>
-
-<div class="memitem">
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-        <tr>
-          <td class="memname">subroutine task_unit_tests</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Run unit tests. </p>
-<p>This task is choosen by setting <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> to 'unit_test'. Or by using the -test command line flag. </p>
-
-</div>
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-<a id="a6094918614520ec19fa43c2230ef24cb"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a6094918614520ec19fa43c2230ef24cb">&#9670;&nbsp;</a></span>task_v3post()</h2>
-
-<div class="memitem">
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-          <td class="memname">subroutine task_v3post </td>
-          <td>(</td>
-          <td class="paramtype">type (<a class="el" href="structv3fit__context_1_1v3fit__context__class.html">v3fit_context_class</a>), intent(inout)&#160;</td>
-          <td class="paramname"><em>context</em></td><td>)</td>
-          <td></td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Solves the equilibrium and calculates the modeled signals. </p>
-<p>Task to just compute modeled signals from an equilibrium. This task is choosen by setting <a class="el" href="namespacev3fit__input.html#a82ad8af4c6bd0f4070ef0f35b933a1ee">v3fit_input::my_task</a> to 'v3post'.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in,out]</td><td class="paramname">context</td><td>An instance of a <a class="el" href="namespacev3fit__context.html">v3fit_context</a> object. </td></tr>
-  </table>
-  </dd>
-</dl>
-
-</div>
-</div>
-<a id="a92499480850f3300c0f265efd3b83b1d"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a92499480850f3300c0f265efd3b83b1d">&#9670;&nbsp;</a></span>v3fit()</h2>
-
-<div class="memitem">
-<div class="memproto">
-      <table class="memname">
-        <tr>
-          <td class="memname">program v3fit</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>V3FIT is a code for reconstructing 3D equilibria. V3FIT determined the optimal parameters of a 3D equilibrium by minimizing the missmatch between modeled and observed signals. V3FIT has been created with contributions from. </p>
-<dl class="section author"><dt>Author</dt><dd>James D. Hanson </dd>
-<dd>
-Mark Cianciosa </dd>
-<dd>
-Steve Hirshman </dd>
-<dd>
-Ed Lazarus </dd>
-<dd>
-Lang Lao </dd>
-<dd>
-Steve Knowlton </dd>
-<dd>
-Gregorio L. Trevisan </dd>
-<dd>
-Eric C. Howell</dd></dl>
-<p>The theory behind V3FIT is outlined in Hanson et. al. doi:10.1088/0029-5515/49/7/075031</p>
-<p>Below is a brief discription of the major top level objects of the code. For discriptions of lower level objects consult the referenced top level objects.</p>
-<p><a class="el" href="namespacemodel.html">model</a> defines the equilibrium model. <a class="el" href="namespacesignal.html">signal</a> defined the interface to the signals. <a class="el" href="namespacereconstruction.html">reconstruction</a> contain the minimization algorithm. <a class="el" href="namespacedata__parameters.html">data_parameters</a> defined the various fixed parameters utility functions used throughout. <a class="el" href="namespacev3fit__input.html">v3fit_input</a> Defines the V3FIT namelist input file. <a class="el" href="namespacev3fit__context.html">v3fit_context</a> defined the main pointer to all allocated memory and objects. <a class="el" href="classcommandline__parser.html">commandline_parser</a> defines and parses commandline arguments.</p>
-<p>V3FIT main program.</p>
-<p>Highest level V3FIT routine. </p>
-
-</div>
-</div>
-</div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<a href="#func-members">Functions/Subroutines</a>  </div>
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-<div class="title">v3rfun.f File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains the main routines for V3RFUN.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a8709d2a209e65f3f30f80a5c873ec85e"><td class="memItemLeft" align="right" valign="top">program&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3rfun_8f.html#a8709d2a209e65f3f30f80a5c873ec85e">v3rfun</a></td></tr>
-<tr class="memdesc:a8709d2a209e65f3f30f80a5c873ec85e"><td class="mdescLeft">&#160;</td><td class="mdescRight">The V3RFUN code is part of a suite of codes, called V3FIT, designed for equilibrium reconstruction of stellarator plasmas. It takes as input descriptions of the field coils and diagnostic coils, and generates files containing the coil and plasma response functions and the plasma response functions. The output files from the V3RFUN code are designed to be used as input to the V3FIT code. Physical quantities in the V3FIT project are measured in SI units, unless otherwise specified.  <a href="v3rfun_8f.html#a8709d2a209e65f3f30f80a5c873ec85e">More...</a><br /></td></tr>
-<tr class="separator:a8709d2a209e65f3f30f80a5c873ec85e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af45c231d54aacf0d444a2e29b9766c90"><td class="memItemLeft" align="right" valign="top">character(len=v3rfun_file_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3rfun_8f.html#af45c231d54aacf0d444a2e29b9766c90">v3rfun_parse_command_line</a> ()</td></tr>
-<tr class="memdesc:af45c231d54aacf0d444a2e29b9766c90"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parse command line arguments.  <a href="v3rfun_8f.html#af45c231d54aacf0d444a2e29b9766c90">More...</a><br /></td></tr>
-<tr class="separator:af45c231d54aacf0d444a2e29b9766c90"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4bddc1aa673931d35623b7ca5136925d"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="v3rfun_8f.html#a4bddc1aa673931d35623b7ca5136925d">v3rfun_print_help</a> ()</td></tr>
-<tr class="memdesc:a4bddc1aa673931d35623b7ca5136925d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out help text.  <a href="v3rfun_8f.html#a4bddc1aa673931d35623b7ca5136925d">More...</a><br /></td></tr>
-<tr class="separator:a4bddc1aa673931d35623b7ca5136925d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains the main routines for V3RFUN. </p>
-</div><h2 class="groupheader">Function/Subroutine Documentation</h2>
-<a id="a8709d2a209e65f3f30f80a5c873ec85e"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a8709d2a209e65f3f30f80a5c873ec85e">&#9670;&nbsp;</a></span>v3rfun()</h2>
-
-<div class="memitem">
-<div class="memproto">
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-          <td class="memname">program v3rfun</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>The V3RFUN code is part of a suite of codes, called V3FIT, designed for equilibrium reconstruction of stellarator plasmas. It takes as input descriptions of the field coils and diagnostic coils, and generates files containing the coil and plasma response functions and the plasma response functions. The output files from the V3RFUN code are designed to be used as input to the V3FIT code. Physical quantities in the V3FIT project are measured in SI units, unless otherwise specified. </p>
-<dl class="section author"><dt>Author</dt><dd>James D. Hanson </dd>
-<dd>
-Mark Cianciosa</dd></dl>
-<p>Below is a brief discription of the major top level objects of the code. For discriptions of lower level objects consult the referenced top level objects.</p>
-<p>V3RFUN main program.</p>
-<p>Highest level V3RFUN routine. </p>
-
-</div>
-</div>
-<a id="af45c231d54aacf0d444a2e29b9766c90"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#af45c231d54aacf0d444a2e29b9766c90">&#9670;&nbsp;</a></span>v3rfun_parse_command_line()</h2>
-
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-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Parse command line arguments. </p>
-<p>The command line arguments are simple. Expect either the -h flag or read the namelist input filename. If any other argument is encountered display the help and terminate the program.</p>
-<dl class="section return"><dt>Returns</dt><dd>The namelist input filename. </dd></dl>
-
-</div>
-</div>
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-
-<div class="memitem">
-<div class="memproto">
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-        <tr>
-          <td class="memname">subroutine v3rfun_print_help</td>
-        </tr>
-      </table>
-</div><div class="memdoc">
-
-<p>Print out help text. </p>
-<p>Command line help text should take the form of '-flag'. A Y or N indicating the flag takes a value or not followed by a space. A short message describing the flag. A reference for all the command line arguments can be found at FIXME. </p>
-
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-
-<p>Contains module <a class="el" href="namespacev3rfun__context.html">v3rfun_context</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">type &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context::v3rfun_context_class</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class representing a v3rfun context. This contains all memory needed to operate v3rfun.  <a href="structv3rfun__context_1_1v3rfun__context__class.html#details">More...</a><br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
-Modules</h2></td></tr>
-<tr class="memitem:namespacev3rfun__context"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html">v3rfun_context</a></td></tr>
-<tr class="memdesc:namespacev3rfun__context"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defines a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object to contain all the memory for running v3rfun. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:a074343447ea2edf0cf2c83aec5638661"><td class="memItemLeft" align="right" valign="top">type(v3rfun_context_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html#a074343447ea2edf0cf2c83aec5638661">v3rfun_context::v3rfun_context_construct</a> (filename)</td></tr>
-<tr class="memdesc:a074343447ea2edf0cf2c83aec5638661"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structv3rfun__context_1_1v3rfun__context__class.html">v3rfun_context_class</a> object.  <a href="namespacev3rfun__context.html#a074343447ea2edf0cf2c83aec5638661">More...</a><br /></td></tr>
-<tr class="separator:a074343447ea2edf0cf2c83aec5638661"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3387d554df545c671c05fd9de2d3e18f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html#a3387d554df545c671c05fd9de2d3e18f">v3rfun_context::v3rfun_context_construct_field_coils</a> (this)</td></tr>
-<tr class="memdesc:a3387d554df545c671c05fd9de2d3e18f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct and initialize the field coil objects.  <a href="namespacev3rfun__context.html#a3387d554df545c671c05fd9de2d3e18f">More...</a><br /></td></tr>
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-<tr class="memdesc:a962cecd3372971387cdd6d07910a7965"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allocate and initialize the response function arrays.  <a href="namespacev3rfun__context.html#a962cecd3372971387cdd6d07910a7965">More...</a><br /></td></tr>
-<tr class="separator:a962cecd3372971387cdd6d07910a7965"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a8615f6e374740ffdbb56e523b2663245"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a634e3b89637eae47ed2a32b9b92d6a19"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__context.html#a634e3b89637eae47ed2a32b9b92d6a19">v3rfun_context::v3rfun_context_write_mrf</a> (this, d_coil, id_num)</td></tr>
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-<tr class="separator:a634e3b89637eae47ed2a32b9b92d6a19"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a1f686f8e1bda13de9929196610122b3b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out a point probe response.  <a href="namespacev3rfun__context.html#a1f686f8e1bda13de9929196610122b3b">More...</a><br /></td></tr>
-<tr class="separator:a1f686f8e1bda13de9929196610122b3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="textblock"><p>Contains module <a class="el" href="namespacev3rfun__context.html">v3rfun_context</a>. </p>
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-<p>Contains module <a class="el" href="namespacev3rfun__input.html">v3rfun_input</a>.  
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-<tr class="memitem:namespacev3rfun__input"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacev3rfun__input.html">v3rfun_input</a></td></tr>
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-<tr class="separator:ac7f6ea66b2772ea98d6e9055bebb7bb8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a2567927008a56ee62126846802c411af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes the response function for a conducting shell. <br /></td></tr>
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-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacev3rfun__input.html">v3rfun_input</a>. </p>
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-<!-- start footer part -->
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-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-   <div id="projectname">Stellarator-Tools
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-  <div class="headertitle">
-<div class="title">Command Line Arguments </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#v3rfun_cl_parsing_intro">Introduction</a></li>
-<li class="level1"><a href="#v3rfun_cl_parsing_arg_sec">Command Line Arguments</a></li>
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-Introduction</h1>
-<p>This contains a description of the command line arguments. All arguments take the form of</p>
-<p><code>xv3rfun [-arg] filename</code></p>
-<h1><a class="anchor" id="v3rfun_cl_parsing_arg_sec"></a>
-Command Line Arguments</h1>
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-<td width="20%"><code>Argument</code></td><td width="5%">Takes Value</td><td width="75%">Discription</td></tr>
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-Programmers Reference</h1>
-<p>Reference material for the coding to implement command line parsing is found in the <a class="el" href="v3rfun_8f.html">v3rfun.f</a> </p>
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-   <div id="projectname">Stellarator-Tools
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-<div class="title">Namelist v3r_coils definition </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#v3rfun_namelist_intro_sec">Introduction</a></li>
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-<li class="level2"><a href="#v3rfun_super_sec">Super Conducting Coils</a></li>
-<li class="level2"><a href="#v3rfun_grid_sec">Response Grid Variables</a></li>
-<li class="level2"><a href="#v3rfun_shift_sec">Tilt and Shift Variables</a></li>
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-<div class="textblock"><h1><a class="anchor" id="v3rfun_namelist_intro_sec"></a>
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-<p>This page documents the contents of a namelist input file. V3RFUN namelist variables are defined in the <code>v3r_coils</code> common block.</p>
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-<td width="20%"><code>use_con_shell</code></td><td width="50%">Computes the response function for a conducting shell.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a2567927008a56ee62126846802c411af">v3rfun_input::use_con_shell</a> </td></tr>
-<tr>
-<td width="20%"><code>len_integrate_ddc</code></td><td width="50%">Integration length in meters.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a57bdfad3feca2863ab8b49024560a468">v3rfun_input::len_integrate_ddc</a> </td></tr>
-</table>
-<h2><a class="anchor" id="v3rfun_super_sec"></a>
-Super Conducting Coils</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>is_super_con</code></td><td width="50%">Flags a coil as a super conductor. Super conducting are steady state so integated magnetic won't pick up an induced signal.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a0e417f9f94583598cce1becb6f75dd72">v3rfun_input::is_super_con</a> </td></tr>
-</table>
-<h2><a class="anchor" id="v3rfun_grid_sec"></a>
-Response Grid Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>ir</code></td><td width="50%">Number of radial grid points.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#af9fd36820cf5fbd60d4cbd31b00b1995">v3rfun_input::ir</a> </td></tr>
-<tr>
-<td width="20%"><code>jz</code></td><td width="50%">Number of vertical grid points.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#ab538d19c70441b2ab5c425ef6f45a209">v3rfun_input::jz</a> </td></tr>
-<tr>
-<td width="20%"><code>kp</code></td><td width="50%">Number of toroidal grid points.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#af2055829670b3481ab38b37d6e0c5052">v3rfun_input::kp</a> </td></tr>
-<tr>
-<td width="20%"><code>kp_shell</code></td><td width="50%">Number of shell toroidal grid points.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a09fbd44c38b097fc453fd6bfc8437950">v3rfun_input::kp_shell</a> </td></tr>
-<tr>
-<td width="20%"><code>n_field_periods_nli</code></td><td width="50%">Number of field periods.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a9d6a7fd431a58959219d3c402da5e407">v3rfun_input::n_field_periods_nli</a> </td></tr>
-<tr>
-<td width="20%"><code>rmin</code></td><td width="50%">Minimum R for plasma grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a833769e85f24a3e9a428481c0d59a83b">v3rfun_input::rmin</a> </td></tr>
-<tr>
-<td width="20%"><code>rmax</code></td><td width="50%">Maximum R for plasma grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a996ea1a92932666158420caca47c3d0d">v3rfun_input::rmax</a> </td></tr>
-<tr>
-<td width="20%"><code>zmin</code></td><td width="50%">Minimum Z for plasma grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a6b66ba823dbe6b9c71dc8dda789ae463">v3rfun_input::zmin</a> </td></tr>
-<tr>
-<td width="20%"><code>zmax</code></td><td width="50%">Maximum Z for plasma grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a3c3ac6f60c8df3f80a7581dd81d94830">v3rfun_input::zmax</a> </td></tr>
-<tr>
-<td width="20%"><code>major_radius</code></td><td width="50%">Shell major radius for shell grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a041ad6c614faa5ff51f599f9357ef18f">v3rfun_input::major_radius</a> </td></tr>
-<tr>
-<td width="20%"><code>minor_radius</code></td><td width="50%">Shell minor radius for shell grid.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a4a0fc45aabfc55f4d16ca4c62350873c">v3rfun_input::minor_radius</a> </td></tr>
-</table>
-<h2><a class="anchor" id="v3rfun_shift_sec"></a>
-Tilt and Shift Variables</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>cg_shift_1</code></td><td width="50%">Vector to shift all the coils before rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a4c82aee1344b1a29a1546a5f55334783">v3rfun_input::cg_shift_1</a> </td></tr>
-<tr>
-<td width="20%"><code>cg_shift_2</code></td><td width="50%">Vector to shift all the coils after rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a39b6271151f09f127bb5a2f119fe128a">v3rfun_input::cg_shift_2</a> </td></tr>
-<tr>
-<td width="20%"><code>cg_rot_xcent</code></td><td width="50%">Position of center of rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#abdc04d7ed82835ffccbc1713e8cb6412">v3rfun_input::cg_rot_xcent</a> </td></tr>
-<tr>
-<td width="20%"><code>cg_rot_theta</code></td><td width="50%">Spherical polar angle to specify axis of rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a12efedfa0e0967859ada4a522f2cc7c8">v3rfun_input::cg_rot_theta</a> </td></tr>
-<tr>
-<td width="20%"><code>cg_rot_phi</code></td><td width="50%">Spherical azimuthal angle to specify axis of rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#aea77e45cae8e4f135db2540ceee1f286">v3rfun_input::cg_rot_phi</a> </td></tr>
-<tr>
-<td width="20%"><code>cg_rot_angle</code></td><td width="50%">Angle to rotate about axis of rotation. Left hand convention. Put left thumb along axis of rotation, fingers indicate direction of positive rotation.</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#a69498e547cb03a51474166cc8ebb4fc2">v3rfun_input::cg_rot_angle</a> </td></tr>
-<tr>
-<td width="20%"><code>l_rot_coil_center</code></td><td width="50%">Controls the center of rotation.<ul>
-<li>True Use current-averaged center of coil-group for center of rotation.</li>
-<li>False Use position specified in cg_rot_xcent for center of rotation.</li>
-</ul>
-</td><td width="30%"><a class="el" href="namespacev3rfun__input.html#ab352e8af69668db867eafcb665e74989">v3rfun_input::l_rot_coil_center</a> </td></tr>
-</table>
-<h1><a class="anchor" id="v3r_coils"></a>
-Example File</h1>
-<div class="fragment"><div class="line"><span class="comment">! Example V3RFUN input file.</span></div>
-<div class="line">&amp;v3fit_main_nli</div>
-<div class="line">  idrfun = <span class="stringliteral">&#39;example&#39;</span></div>
-<div class="line">  name_coils_dot = <span class="stringliteral">&#39;coils.example&#39;</span></div>
-<div class="line">  name_diagnostic_dot = <span class="stringliteral">&#39;diagnostic.example.dot&#39;</span></div>
-<div class="line">  rmin=0.98</div>
-<div class="line">  rmax=2.02</div>
-<div class="line">  zmin=-0.52</div>
-<div class="line">  zmax=0.52</div>
-<div class="line">  ir=101</div>
-<div class="line">  jz=101</div>
-<div class="line">  kp=32</div>
-<div class="line">  lstell_sym =  f</div>
-<div class="line"> </div>
-<div class="line">  use_con_shell = t</div>
-<div class="line">  major_radius = 1.5</div>
-<div class="line">  minor_radius = 0.525</div>
-<div class="line">  kp_shell = 128</div>
-<div class="line">/</div>
-</div><!-- fragment --><h1><a class="anchor" id="v3rfun_namelist_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement this namelist is found in the <a class="el" href="namespacev3rfun__input.html">v3rfun_input</a> module. </p>
-</div></div><!-- contents -->
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-<p>Contains module <a class="el" href="namespacevacuum__equilibrium.html">vacuum_equilibrium</a>.  
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-<table class="memberdecls">
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html">vacuum_equilibrium::vacuum_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a2d815c586d1d0ca800713be1a81a36f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a158feaf1eb7f3be723a04e3499e6abeb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:aba6f072e24c78c4c374bf5f037b4f9d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacevacuum__equilibrium.html#aba6f072e24c78c4c374bf5f037b4f9d6">More...</a><br /></td></tr>
-<tr class="separator:aba6f072e24c78c4c374bf5f037b4f9d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a24c3721f5e87dcde8c0f1b3c41226f59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8cb64503465b60227dc26f404b446d46"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a8cb64503465b60227dc26f404b446d46">vacuum_equilibrium::vacuum_get_param_id</a> (this, param_name)</td></tr>
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-<tr class="separator:a8cb64503465b60227dc26f404b446d46"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7fcbc5750ae0dc10b13291b13254e1c3"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a7fcbc5750ae0dc10b13291b13254e1c3">vacuum_equilibrium::vacuum_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a7fcbc5750ae0dc10b13291b13254e1c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction vacuum parameter.  <a href="namespacevacuum__equilibrium.html#a7fcbc5750ae0dc10b13291b13254e1c3">More...</a><br /></td></tr>
-<tr class="separator:a7fcbc5750ae0dc10b13291b13254e1c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ace1fd5735aff18c72ca2191af66281d8"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#ace1fd5735aff18c72ca2191af66281d8">vacuum_equilibrium::vacuum_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:ace1fd5735aff18c72ca2191af66281d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the name of a reconstruction vacuum parameter.  <a href="namespacevacuum__equilibrium.html#ace1fd5735aff18c72ca2191af66281d8">More...</a><br /></td></tr>
-<tr class="separator:ace1fd5735aff18c72ca2191af66281d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4df6661459fbdfb21e332948f2b0a81e"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a4df6661459fbdfb21e332948f2b0a81e">vacuum_equilibrium::vacuum_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a4df6661459fbdfb21e332948f2b0a81e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespacevacuum__equilibrium.html#a4df6661459fbdfb21e332948f2b0a81e">More...</a><br /></td></tr>
-<tr class="separator:a4df6661459fbdfb21e332948f2b0a81e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a7e45b41e3462a940c9ea282ade2dcd0e">vacuum_equilibrium::vacuum_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacevacuum__equilibrium.html#a7e45b41e3462a940c9ea282ade2dcd0e">More...</a><br /></td></tr>
-<tr class="separator:a7e45b41e3462a940c9ea282ade2dcd0e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a821a3f5f8b5f126a6453dfa1964d553a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevacuum__equilibrium.html#a821a3f5f8b5f126a6453dfa1964d553a">vacuum_equilibrium::vacuum_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
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-<tr class="separator:a821a3f5f8b5f126a6453dfa1964d553a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<div class="title">Vacuum Equilibrium Manual </div>  </div>
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-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#vacuum_equilibrium_model_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#vacuum_equilibrium_recon_param_sec">Vacuum Reconstruction Parameters</a></li>
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-Introduction</h1>
-<p>This page documents the V3FIT interface to the vacuum equilibrium. This lists all the parameters associated with a vacuum equilibrium. All parameters are documented in a table of the following form. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
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-Vacuum Reconstruction Parameters</h1>
-<table border="1px" width="80%">
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-<td width="20%"><code>extcur</code></td><td width="50%">1D Array of external currents.</td><td width="30%">@ref <a class="el" href="structvacuum__equilibrium_1_1vacuum__class.html#ad225c6a24e78bbe13e3c7cdd21fda033" title="Array of external currents.">vacuum_equilibrium::vacuum_class::extcur</a> </td></tr>
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-<div class="title">Namelist vacuum_main_nli definition </div>  </div>
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-<ul><li class="level1"><a href="#vacuum_namelist_intro_sec">Introduction</a></li>
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-<li class="level2"><a href="#vacuum_size_sec">Array allocation sizes.</a></li>
-<li class="level2"><a href="#vacuum_eq_var_sec">Equilibrium variables</a></li>
-<li class="level2"><a href="#vacuum_sr_var_sec">Shifts and rotations of external coils.</a></li>
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-</li>
-<li class="level1"><a href="#vacuum_namelist_exam_sec">Example Files</a></li>
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-<div class="textblock"><h1><a class="anchor" id="vacuum_namelist_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a vacuum namelist input file. Vacuum namelist variables are defined in the <code>vacuum_main_nli</code> common block.</p>
-<h1><a class="anchor" id="vacuum_namelist_var_sec"></a>
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-<table border="1px" width="80%">
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-Filename variables</h2>
-<table border="1px" width="80%">
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-<td width="20%"><code>coils_dot_file</code></td><td width="50%">File name for the mgrid namelist input file.</td><td width="30%"><a class="el" href="namespacevacuum__input.html#a2bb9564b99591f62f4d9f59a81f806e8">vacuum_input::coils_dot_file</a> </td></tr>
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-Array allocation sizes.</h2>
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-<td width="20%"><code>n_extcur</code></td><td width="50%">Size of the extcur array</td><td width="30%"><a class="el" href="namespacevacuum__input.html#aa4f35a8df2a0a72ce5166e663408089d">vacuum_input::n_extcur</a> </td></tr>
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-Shifts and rotations of external coils.</h2>
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-<td width="20%"><code>cg_shift_1</code></td><td width="50%">Vector to shift all the coils. (Before rotation)</td><td width="30%">@ref <a class="el" href="namespacevacuum__input.html#a8933cc0c143a80c1a48186d5dd9977b8" title="Vector to shift all the coils. (Before rotation)">vacuum_input::cg_shift_1</a> </td></tr>
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-<td width="20%"><code>cg_rot_theta</code></td><td width="50%">Spherical polar angle to specify axis of rotation.</td><td width="30%">@ref <a class="el" href="namespacevacuum__input.html#a9d65334d0e448272bc5a898094be658e" title="Spherical polar angle to specify axis of rotation.">vacuum_input::cg_rot_theta</a> </td></tr>
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-<td width="20%"><code>cg_rot_angle</code></td><td width="50%">Angle to rotate about axis of rotation. NB - LEFT HAND convention. Put left thumb along axis of rotation, fingers indicate direction of positive rotation.</td><td width="30%">@ref <a class="el" href="namespacevacuum__input.html#a32022f55c4b87973b3869742944ef82e" title="Angle to rotate about axis of rotation. NB - LEFT HAND convention. Put left thumb along axis of rotat...">vacuum_input::cg_rot_angle</a> </td></tr>
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-Example Files</h1>
-<div class="fragment"><div class="line"><span class="comment">! Example vacuum input file.</span></div>
-<div class="line">&amp;vacuum_main_nli</div>
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-<div class="line"> </div>
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-</div><!-- fragment --><h1><a class="anchor" id="vacuum_namelist_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement this namelist is found in the <a class="el" href="namespacevacuum__input.html">vacuum_input</a> module. </p>
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-<p>Contains module <a class="el" href="namespacevmec__context.html">vmec_context</a>.  
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-<p>Contains module <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>.  
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">vmec_equilibrium::runvmec</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward declare the interface for <a class="el" href="interfacevmec__equilibrium_1_1runvmec.html">runvmec</a>.  <a href="interfacevmec__equilibrium_1_1runvmec.html#details">More...</a><br /></td></tr>
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-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
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-<tr class="memitem:namespacevmec__equilibrium"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a></td></tr>
-<tr class="memdesc:namespacevmec__equilibrium"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defines the base class of the type <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a>. This module contains all the code necessary to interface V3FIT with VMEC. <br /></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
-Functions/Subroutines</h2></td></tr>
-<tr class="memitem:ab2aedb4b919e973a902163d8da0a7109"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab2aedb4b919e973a902163d8da0a7109">vmec_equilibrium::vmec_construct_sub</a> (this, file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td></tr>
-<tr class="memdesc:ab2aedb4b919e973a902163d8da0a7109"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#ab2aedb4b919e973a902163d8da0a7109">More...</a><br /></td></tr>
-<tr class="separator:ab2aedb4b919e973a902163d8da0a7109"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3698795faf0024a046d0c89a2ee84e4d"><td class="memItemLeft" align="right" valign="top">type(vmec_class) function, pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3698795faf0024a046d0c89a2ee84e4d">vmec_equilibrium::vmec_construct</a> (file_name, wout_file_name, ne, te, ti, sxrem, phi_offset, z_offset, pol_rad_ratio, iou, eq_comm, recon_comm, state_flags, force_solve)</td></tr>
-<tr class="memdesc:a3698795faf0024a046d0c89a2ee84e4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#a3698795faf0024a046d0c89a2ee84e4d">More...</a><br /></td></tr>
-<tr class="separator:a3698795faf0024a046d0c89a2ee84e4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aac74c89608f1ab1ba7efa6a6a80bd9d5">vmec_equilibrium::vmec_destruct</a> (this)</td></tr>
-<tr class="memdesc:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structvmec__equilibrium_1_1vmec__class.html">vmec_class</a> object.  <a href="namespacevmec__equilibrium.html#aac74c89608f1ab1ba7efa6a6a80bd9d5">More...</a><br /></td></tr>
-<tr class="separator:aac74c89608f1ab1ba7efa6a6a80bd9d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08a558e21fb005492c9c4102dfa80ebc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc">vmec_equilibrium::vmec_set_param</a> (this, id, i_index, j_index, value, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:a08a558e21fb005492c9c4102dfa80ebc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value of a reconstruction equilibrium parameter.  <a href="namespacevmec__equilibrium.html#a08a558e21fb005492c9c4102dfa80ebc">More...</a><br /></td></tr>
-<tr class="separator:a08a558e21fb005492c9c4102dfa80ebc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">vmec_equilibrium::vmec_set_magnetic_cache_response</a> (this, response_object, state_flags)</td></tr>
-<tr class="memdesc:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache for plasma resonce.  <a href="namespacevmec__equilibrium.html#a624f406b1f3e2bcf8ee8825061f98bbf">More...</a><br /></td></tr>
-<tr class="separator:a624f406b1f3e2bcf8ee8825061f98bbf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a355d774feafc69fda582d6fe0269b828"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a355d774feafc69fda582d6fe0269b828">vmec_equilibrium::vmec_set_magnetic_cache_point</a> (this, use_axi, state_flags)</td></tr>
-<tr class="memdesc:a355d774feafc69fda582d6fe0269b828"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacevmec__equilibrium.html#a355d774feafc69fda582d6fe0269b828">More...</a><br /></td></tr>
-<tr class="separator:a355d774feafc69fda582d6fe0269b828"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a08c1386909dadbb57c3b8988a8c7206e"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e">vmec_equilibrium::vmec_set_magnetic_cache_calc</a> (this)</td></tr>
-<tr class="memdesc:a08c1386909dadbb57c3b8988a8c7206e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set magnetic cache initialy.  <a href="namespacevmec__equilibrium.html#a08c1386909dadbb57c3b8988a8c7206e">More...</a><br /></td></tr>
-<tr class="separator:a08c1386909dadbb57c3b8988a8c7206e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac1c8619aa312f52d85ac59c1ee0befe8">vmec_equilibrium::vmec_set_namelist</a> (this)</td></tr>
-<tr class="memdesc:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets namelist variables from the solved VMEC equilibrium.  <a href="namespacevmec__equilibrium.html#ac1c8619aa312f52d85ac59c1ee0befe8">More...</a><br /></td></tr>
-<tr class="separator:ac1c8619aa312f52d85ac59c1ee0befe8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a65aae6ba7b821665a846416e2357bbde"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde">vmec_equilibrium::vmec_get_type</a> (this)</td></tr>
-<tr class="memdesc:a65aae6ba7b821665a846416e2357bbde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets a discription of the equilibrium type.  <a href="namespacevmec__equilibrium.html#a65aae6ba7b821665a846416e2357bbde">More...</a><br /></td></tr>
-<tr class="separator:a65aae6ba7b821665a846416e2357bbde"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad99dfb81ec8b7b93feb015307f54da24"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24">vmec_equilibrium::vmec_get_param_id</a> (this, param_name)</td></tr>
-<tr class="memdesc:ad99dfb81ec8b7b93feb015307f54da24"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the id for a reconstruction parameter.  <a href="namespacevmec__equilibrium.html#ad99dfb81ec8b7b93feb015307f54da24">More...</a><br /></td></tr>
-<tr class="separator:ad99dfb81ec8b7b93feb015307f54da24"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73">vmec_equilibrium::vmec_get_param_value</a> (this, id, i_index, j_index)</td></tr>
-<tr class="memdesc:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the value of a reconstruction VMEC parameter.  <a href="namespacevmec__equilibrium.html#a2e7e72b5b8ee7491814a08c3d401cc73">More...</a><br /></td></tr>
-<tr class="separator:a2e7e72b5b8ee7491814a08c3d401cc73"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="memItemLeft" align="right" valign="top">character(len=data_name_length) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332">vmec_equilibrium::vmec_get_param_name</a> (this, id)</td></tr>
-<tr class="memdesc:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the name of a reconstruction VMEC parameter.  <a href="namespacevmec__equilibrium.html#abb8ca11d6f8a608eacd9b1bb6a807332">More...</a><br /></td></tr>
-<tr class="separator:abb8ca11d6f8a608eacd9b1bb6a807332"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3b025d92cb76b4918552f70f6f3ae557"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557">vmec_equilibrium::vmec_get_gp_ne_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a3b025d92cb76b4918552f70f6f3ae557"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron density gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a3b025d92cb76b4918552f70f6f3ae557">More...</a><br /></td></tr>
-<tr class="separator:a3b025d92cb76b4918552f70f6f3ae557"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc">vmec_equilibrium::vmec_get_ne_af</a> (this)</td></tr>
-<tr class="memdesc:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density profile af array.  <a href="namespacevmec__equilibrium.html#ac9a9ea000c5ccc3b0b0cefd663cef3cc">More...</a><br /></td></tr>
-<tr class="separator:ac9a9ea000c5ccc3b0b0cefd663cef3cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae78a669c86f61b357cee909d7720cd02"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02">vmec_equilibrium::vmec_get_gp_ne_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:ae78a669c86f61b357cee909d7720cd02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#ae78a669c86f61b357cee909d7720cd02">More...</a><br /></td></tr>
-<tr class="separator:ae78a669c86f61b357cee909d7720cd02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c">vmec_equilibrium::vmec_get_gp_ne_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#aa3795f5a6b5bdbac8556de3e6c4f480c">More...</a><br /></td></tr>
-<tr class="separator:aa3795f5a6b5bdbac8556de3e6c4f480c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4">vmec_equilibrium::vmec_get_gp_ne_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron density gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#ac917858da3176ed2a0c6c5f93adb0ae4">More...</a><br /></td></tr>
-<tr class="separator:ac917858da3176ed2a0c6c5f93adb0ae4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5162748610407fdba4edfeede1c56400"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5162748610407fdba4edfeede1c56400">vmec_equilibrium::vmec_get_ne_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a5162748610407fdba4edfeede1c56400"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a cartesian position.  <a href="namespacevmec__equilibrium.html#a5162748610407fdba4edfeede1c56400">More...</a><br /></td></tr>
-<tr class="separator:a5162748610407fdba4edfeede1c56400"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a38dff7757255c7f94de65a1b177b7111"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a38dff7757255c7f94de65a1b177b7111">vmec_equilibrium::vmec_get_ne_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a38dff7757255c7f94de65a1b177b7111"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron density at a s position.  <a href="namespacevmec__equilibrium.html#a38dff7757255c7f94de65a1b177b7111">More...</a><br /></td></tr>
-<tr class="separator:a38dff7757255c7f94de65a1b177b7111"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5d1e2a51f8c02300257ddc1c711df165"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165">vmec_equilibrium::vmec_get_gp_te_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:a5d1e2a51f8c02300257ddc1c711df165"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of electron temperature gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a5d1e2a51f8c02300257ddc1c711df165">More...</a><br /></td></tr>
-<tr class="separator:a5d1e2a51f8c02300257ddc1c711df165"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a81c07bed241bb1202b5f23aeb808713b"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">vmec_equilibrium::vmec_get_te_af</a> (this)</td></tr>
-<tr class="memdesc:a81c07bed241bb1202b5f23aeb808713b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature profile af array.  <a href="namespacevmec__equilibrium.html#a81c07bed241bb1202b5f23aeb808713b">More...</a><br /></td></tr>
-<tr class="separator:a81c07bed241bb1202b5f23aeb808713b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a520d0f5ef178c883ed68f7e44b38c164"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164">vmec_equilibrium::vmec_get_gp_te_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a520d0f5ef178c883ed68f7e44b38c164"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#a520d0f5ef178c883ed68f7e44b38c164">More...</a><br /></td></tr>
-<tr class="separator:a520d0f5ef178c883ed68f7e44b38c164"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2886974d81d88cb700bafeb8f3273fe8"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8">vmec_equilibrium::vmec_get_gp_te_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a2886974d81d88cb700bafeb8f3273fe8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#a2886974d81d88cb700bafeb8f3273fe8">More...</a><br /></td></tr>
-<tr class="separator:a2886974d81d88cb700bafeb8f3273fe8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeab774cc5fb4313d377d9f75cf1268db"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db">vmec_equilibrium::vmec_get_gp_te_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:aeab774cc5fb4313d377d9f75cf1268db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the electron temperature gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#aeab774cc5fb4313d377d9f75cf1268db">More...</a><br /></td></tr>
-<tr class="separator:aeab774cc5fb4313d377d9f75cf1268db"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a380b877fbbdf96daa86ae594a58aa57b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a380b877fbbdf96daa86ae594a58aa57b">vmec_equilibrium::vmec_get_te_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a380b877fbbdf96daa86ae594a58aa57b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a cartesian position.  <a href="namespacevmec__equilibrium.html#a380b877fbbdf96daa86ae594a58aa57b">More...</a><br /></td></tr>
-<tr class="separator:a380b877fbbdf96daa86ae594a58aa57b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab4edfad818935e2d96e6a744df849a4b"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab4edfad818935e2d96e6a744df849a4b">vmec_equilibrium::vmec_get_te_radial</a> (this, s)</td></tr>
-<tr class="memdesc:ab4edfad818935e2d96e6a744df849a4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the electron temperature at a s position.  <a href="namespacevmec__equilibrium.html#ab4edfad818935e2d96e6a744df849a4b">More...</a><br /></td></tr>
-<tr class="separator:ab4edfad818935e2d96e6a744df849a4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af19abc6f123b38c9c8ed0897d8194e61"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61">vmec_equilibrium::vmec_get_gp_ti_num_hyper_param</a> (this)</td></tr>
-<tr class="memdesc:af19abc6f123b38c9c8ed0897d8194e61"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of ion temperature gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#af19abc6f123b38c9c8ed0897d8194e61">More...</a><br /></td></tr>
-<tr class="separator:af19abc6f123b38c9c8ed0897d8194e61"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1">vmec_equilibrium::vmec_get_ti_af</a> (this)</td></tr>
-<tr class="memdesc:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature profile af array.  <a href="namespacevmec__equilibrium.html#aae0b8ad513228cd7ddcfe7b9b5db41c1">More...</a><br /></td></tr>
-<tr class="separator:aae0b8ad513228cd7ddcfe7b9b5db41c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a26bde51d5aefffcfce4cae769b085f6e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e">vmec_equilibrium::vmec_get_gp_ti_ij</a> (this, i, j)</td></tr>
-<tr class="memdesc:a26bde51d5aefffcfce4cae769b085f6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#a26bde51d5aefffcfce4cae769b085f6e">More...</a><br /></td></tr>
-<tr class="separator:a26bde51d5aefffcfce4cae769b085f6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb">vmec_equilibrium::vmec_get_gp_ti_pi</a> (this, x_cart, i)</td></tr>
-<tr class="memdesc:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#a5cc64e667306b00293c1eaa9b6d6a4eb">More...</a><br /></td></tr>
-<tr class="separator:a5cc64e667306b00293c1eaa9b6d6a4eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a544c0845bf4b62feaba66bb8d8676ff2"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2">vmec_equilibrium::vmec_get_gp_ti_pp</a> (this, x_cart, y_cart)</td></tr>
-<tr class="memdesc:a544c0845bf4b62feaba66bb8d8676ff2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the ion temperature gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#a544c0845bf4b62feaba66bb8d8676ff2">More...</a><br /></td></tr>
-<tr class="separator:a544c0845bf4b62feaba66bb8d8676ff2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aefb1dc6ad97f59a8d75d60f2737f688c">vmec_equilibrium::vmec_get_ti_cart</a> (this, x_cart)</td></tr>
-<tr class="memdesc:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a cartesian position.  <a href="namespacevmec__equilibrium.html#aefb1dc6ad97f59a8d75d60f2737f688c">More...</a><br /></td></tr>
-<tr class="separator:aefb1dc6ad97f59a8d75d60f2737f688c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7e33bef6e48cc1fd769a35b2b4a27699">vmec_equilibrium::vmec_get_ti_radial</a> (this, s)</td></tr>
-<tr class="memdesc:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the ion temperature at a s position.  <a href="namespacevmec__equilibrium.html#a7e33bef6e48cc1fd769a35b2b4a27699">More...</a><br /></td></tr>
-<tr class="separator:a7e33bef6e48cc1fd769a35b2b4a27699"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69d3909c224767679dcf0e5371d79649"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649">vmec_equilibrium::vmec_get_gp_sxrem_num_hyper_param</a> (this, index)</td></tr>
-<tr class="memdesc:a69d3909c224767679dcf0e5371d79649"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of soft x-ray emission gp kernel hyper parameters.  <a href="namespacevmec__equilibrium.html#a69d3909c224767679dcf0e5371d79649">More...</a><br /></td></tr>
-<tr class="separator:a69d3909c224767679dcf0e5371d79649"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7532757e09dfbc0ca78c3d163febc265"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265">vmec_equilibrium::vmec_get_sxrem_af</a> (this, index)</td></tr>
-<tr class="memdesc:a7532757e09dfbc0ca78c3d163febc265"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity profile af array.  <a href="namespacevmec__equilibrium.html#a7532757e09dfbc0ca78c3d163febc265">More...</a><br /></td></tr>
-<tr class="separator:a7532757e09dfbc0ca78c3d163febc265"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac2cc60f25eaca40b76f82f4208b1809e"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac2cc60f25eaca40b76f82f4208b1809e">vmec_equilibrium::vmec_get_gp_sxrem_ij</a> (this, i, j, index)</td></tr>
-<tr class="memdesc:ac2cc60f25eaca40b76f82f4208b1809e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the two indicies.  <a href="namespacevmec__equilibrium.html#ac2cc60f25eaca40b76f82f4208b1809e">More...</a><br /></td></tr>
-<tr class="separator:ac2cc60f25eaca40b76f82f4208b1809e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565">vmec_equilibrium::vmec_get_gp_sxrem_pi</a> (this, x_cart, i, index)</td></tr>
-<tr class="memdesc:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and index.  <a href="namespacevmec__equilibrium.html#ab2f4fa4892b21caeaa2e730d24c7c565">More...</a><br /></td></tr>
-<tr class="separator:ab2f4fa4892b21caeaa2e730d24c7c565"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1">vmec_equilibrium::vmec_get_gp_sxrem_pp</a> (this, x_cart, y_cart, index)</td></tr>
-<tr class="memdesc:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the soft x-ray emissivity gp kernel value for the position and position.  <a href="namespacevmec__equilibrium.html#aca9eb27b9175b8e3005db02ec9f1b0a1">More...</a><br /></td></tr>
-<tr class="separator:aca9eb27b9175b8e3005db02ec9f1b0a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad00c4e2bf2224cf441531722a6e73681"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">vmec_equilibrium::vmec_get_sxrem_cart</a> (this, x_cart, index)</td></tr>
-<tr class="memdesc:ad00c4e2bf2224cf441531722a6e73681"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a cartesian position.  <a href="namespacevmec__equilibrium.html#ad00c4e2bf2224cf441531722a6e73681">More...</a><br /></td></tr>
-<tr class="separator:ad00c4e2bf2224cf441531722a6e73681"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aad5f316f17dd9811f1aa5a9ee49b3e8a">vmec_equilibrium::vmec_get_sxrem_radial</a> (this, s, index)</td></tr>
-<tr class="memdesc:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the soft x-ray emissivity at a s position.  <a href="namespacevmec__equilibrium.html#aad5f316f17dd9811f1aa5a9ee49b3e8a">More...</a><br /></td></tr>
-<tr class="separator:aad5f316f17dd9811f1aa5a9ee49b3e8a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a28da0b909345dd8940e046c432624f54"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a28da0b909345dd8940e046c432624f54">vmec_equilibrium::vmec_get_p_cart</a> (this, x_cart, normalize)</td></tr>
-<tr class="memdesc:a28da0b909345dd8940e046c432624f54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a cartesian position.  <a href="namespacevmec__equilibrium.html#a28da0b909345dd8940e046c432624f54">More...</a><br /></td></tr>
-<tr class="separator:a28da0b909345dd8940e046c432624f54"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7d6de6e41f3b42cbe5f9c720e9412abe">vmec_equilibrium::vmec_get_p_radial</a> (this, s, normalize)</td></tr>
-<tr class="memdesc:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the plasma pressure at a s position.  <a href="namespacevmec__equilibrium.html#a7d6de6e41f3b42cbe5f9c720e9412abe">More...</a><br /></td></tr>
-<tr class="separator:a7d6de6e41f3b42cbe5f9c720e9412abe"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a77d739f769354141eecec5844b37263a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a77d739f769354141eecec5844b37263a">vmec_equilibrium::vmec_get_b_vec</a> (this, x_cart, cyl)</td></tr>
-<tr class="memdesc:a77d739f769354141eecec5844b37263a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the magnetic field vector at a position.  <a href="namespacevmec__equilibrium.html#a77d739f769354141eecec5844b37263a">More...</a><br /></td></tr>
-<tr class="separator:a77d739f769354141eecec5844b37263a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa571272262c2461ad439aacedb13b505"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa571272262c2461ad439aacedb13b505">vmec_equilibrium::vmec_get_int_b_dphi</a> (this, s, theta)</td></tr>
-<tr class="memdesc:aa571272262c2461ad439aacedb13b505"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the loop integrated magnetic field at a position.  <a href="namespacevmec__equilibrium.html#aa571272262c2461ad439aacedb13b505">More...</a><br /></td></tr>
-<tr class="separator:aa571272262c2461ad439aacedb13b505"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab7b4ef3ae9bb37c5dbdac077d64a7f36">vmec_equilibrium::vmec_get_suv</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC suv position.  <a href="namespacevmec__equilibrium.html#ab7b4ef3ae9bb37c5dbdac077d64a7f36">More...</a><br /></td></tr>
-<tr class="separator:ab7b4ef3ae9bb37c5dbdac077d64a7f36"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab972cec76da4119a8904190c6ef1c625"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab972cec76da4119a8904190c6ef1c625">vmec_equilibrium::vmec_get_s</a> (this, x_cart)</td></tr>
-<tr class="memdesc:ab972cec76da4119a8904190c6ef1c625"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC s value at position.  <a href="namespacevmec__equilibrium.html#ab972cec76da4119a8904190c6ef1c625">More...</a><br /></td></tr>
-<tr class="separator:ab972cec76da4119a8904190c6ef1c625"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a85a45be457fd2cd01d9161590731dcc1"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a85a45be457fd2cd01d9161590731dcc1">vmec_equilibrium::vmec_get_flux</a> (this, x_cart)</td></tr>
-<tr class="memdesc:a85a45be457fd2cd01d9161590731dcc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets VMEC normalized flux value at position.  <a href="namespacevmec__equilibrium.html#a85a45be457fd2cd01d9161590731dcc1">More...</a><br /></td></tr>
-<tr class="separator:a85a45be457fd2cd01d9161590731dcc1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a32f4955dc924eecc897cc2a0a8183d79"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79">vmec_equilibrium::vmec_get_plasma_edge</a> (this, phi, r, z)</td></tr>
-<tr class="memdesc:a32f4955dc924eecc897cc2a0a8183d79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the r and z positions of the outer surface at a toroidal angle.  <a href="namespacevmec__equilibrium.html#a32f4955dc924eecc897cc2a0a8183d79">More...</a><br /></td></tr>
-<tr class="separator:a32f4955dc924eecc897cc2a0a8183d79"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a2f39021e1aa97b9da18694fe73dcee02"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02">vmec_equilibrium::vmec_get_magnetic_volume_rgrid</a> (this)</td></tr>
-<tr class="memdesc:a2f39021e1aa97b9da18694fe73dcee02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration radial grid points.  <a href="namespacevmec__equilibrium.html#a2f39021e1aa97b9da18694fe73dcee02">More...</a><br /></td></tr>
-<tr class="separator:a2f39021e1aa97b9da18694fe73dcee02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a153e659e6b4e31436d722f36140b416a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a">vmec_equilibrium::vmec_get_magnetic_volume_zgrid</a> (this)</td></tr>
-<tr class="memdesc:a153e659e6b4e31436d722f36140b416a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration z grid points.  <a href="namespacevmec__equilibrium.html#a153e659e6b4e31436d722f36140b416a">More...</a><br /></td></tr>
-<tr class="separator:a153e659e6b4e31436d722f36140b416a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab067c8fc0ce2d09f848418141935e64a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a">vmec_equilibrium::vmec_get_magnetic_volume_jrgrid</a> (this)</td></tr>
-<tr class="memdesc:ab067c8fc0ce2d09f848418141935e64a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jr grid points.  <a href="namespacevmec__equilibrium.html#ab067c8fc0ce2d09f848418141935e64a">More...</a><br /></td></tr>
-<tr class="separator:ab067c8fc0ce2d09f848418141935e64a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:abe3de7ad61803dbba28dab86b6837f37"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37">vmec_equilibrium::vmec_get_magnetic_volume_jphigrid</a> (this)</td></tr>
-<tr class="memdesc:abe3de7ad61803dbba28dab86b6837f37"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jphi grid points.  <a href="namespacevmec__equilibrium.html#abe3de7ad61803dbba28dab86b6837f37">More...</a><br /></td></tr>
-<tr class="separator:abe3de7ad61803dbba28dab86b6837f37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16">vmec_equilibrium::vmec_get_magnetic_volume_jzgrid</a> (this)</td></tr>
-<tr class="memdesc:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume magnetic volume integration jz grid points.  <a href="namespacevmec__equilibrium.html#a13885bbe9a9ada9d7cb6273e37f45b16">More...</a><br /></td></tr>
-<tr class="separator:a13885bbe9a9ada9d7cb6273e37f45b16"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4a6605a691589a81726ff51783fb2a27"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27">vmec_equilibrium::vmec_get_volume_int_element</a> (this)</td></tr>
-<tr class="memdesc:a4a6605a691589a81726ff51783fb2a27"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get volume integration element.  <a href="namespacevmec__equilibrium.html#a4a6605a691589a81726ff51783fb2a27">More...</a><br /></td></tr>
-<tr class="separator:a4a6605a691589a81726ff51783fb2a27"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad660be69e79334570cc9fef5d824eb3a"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a">vmec_equilibrium::vmec_get_con_surface_krgrid</a> (this)</td></tr>
-<tr class="memdesc:ad660be69e79334570cc9fef5d824eb3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kr grid points.  <a href="namespacevmec__equilibrium.html#ad660be69e79334570cc9fef5d824eb3a">More...</a><br /></td></tr>
-<tr class="separator:ad660be69e79334570cc9fef5d824eb3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82">vmec_equilibrium::vmec_get_con_surface_kphigrid</a> (this)</td></tr>
-<tr class="memdesc:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kphi grid points.  <a href="namespacevmec__equilibrium.html#a53c6f155f4a4bdbea63fe7cc3e229f82">More...</a><br /></td></tr>
-<tr class="separator:a53c6f155f4a4bdbea63fe7cc3e229f82"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a45a1832aeb9f2a2247e0973fd57218ec"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:,:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec">vmec_equilibrium::vmec_get_con_surface_kzgrid</a> (this)</td></tr>
-<tr class="memdesc:a45a1832aeb9f2a2247e0973fd57218ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the conducting surface integration kz grid points.  <a href="namespacevmec__equilibrium.html#a45a1832aeb9f2a2247e0973fd57218ec">More...</a><br /></td></tr>
-<tr class="separator:a45a1832aeb9f2a2247e0973fd57218ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f">vmec_equilibrium::vmec_get_area_int_element</a> (this)</td></tr>
-<tr class="memdesc:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get area integration element.  <a href="namespacevmec__equilibrium.html#a7d9a3804c4ddbfbe11aefe53d7382e1f">More...</a><br /></td></tr>
-<tr class="separator:a7d9a3804c4ddbfbe11aefe53d7382e1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(:), pointer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e">vmec_equilibrium::vmec_get_ext_currents</a> (this, num_currents, scale_currents)</td></tr>
-<tr class="memdesc:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external current.  <a href="namespacevmec__equilibrium.html#a0a0f36d6a4d31de871ed1f0430e9317e">More...</a><br /></td></tr>
-<tr class="separator:a0a0f36d6a4d31de871ed1f0430e9317e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a96e24113a75f37fbf54fd62109a9d18f"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a96e24113a75f37fbf54fd62109a9d18f">vmec_equilibrium::vmec_get_b_vac</a> (this, r_cyl)</td></tr>
-<tr class="memdesc:a96e24113a75f37fbf54fd62109a9d18f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the vacuum magnetic field vector at a position.  <a href="namespacevmec__equilibrium.html#a96e24113a75f37fbf54fd62109a9d18f">More...</a><br /></td></tr>
-<tr class="separator:a96e24113a75f37fbf54fd62109a9d18f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="memItemLeft" align="right" valign="top">real(rprec) function, dimension(3)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4">vmec_equilibrium::vmec_get_ext_b_plasma</a> (this, position, axi_only)</td></tr>
-<tr class="memdesc:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get external plasma magnetic field.  <a href="namespacevmec__equilibrium.html#aa8fc30f3af769bb9675e9e6588ec01a4">More...</a><br /></td></tr>
-<tr class="separator:aa8fc30f3af769bb9675e9e6588ec01a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3ad17ca9d56db446c89d054904b48de1"><td class="memItemLeft" align="right" valign="top">integer function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1">vmec_equilibrium::vmec_get_grid_size</a> (this)</td></tr>
-<tr class="memdesc:a3ad17ca9d56db446c89d054904b48de1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacevmec__equilibrium.html#a3ad17ca9d56db446c89d054904b48de1">More...</a><br /></td></tr>
-<tr class="separator:a3ad17ca9d56db446c89d054904b48de1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ace80249dec941b94c117a7196bcc82ff"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff">vmec_equilibrium::vmec_get_grid_start</a> (this)</td></tr>
-<tr class="memdesc:ace80249dec941b94c117a7196bcc82ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get start of the radial grid.  <a href="namespacevmec__equilibrium.html#ace80249dec941b94c117a7196bcc82ff">More...</a><br /></td></tr>
-<tr class="separator:ace80249dec941b94c117a7196bcc82ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a454861ad80f655ff10470f3de886e8a4"><td class="memItemLeft" align="right" valign="top">real(rprec) function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4">vmec_equilibrium::vmec_get_grid_stop</a> (this)</td></tr>
-<tr class="memdesc:a454861ad80f655ff10470f3de886e8a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get radial grid size.  <a href="namespacevmec__equilibrium.html#a454861ad80f655ff10470f3de886e8a4">More...</a><br /></td></tr>
-<tr class="separator:a454861ad80f655ff10470f3de886e8a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a383754a3291c20e5769e7cbcae3e79fd"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd">vmec_equilibrium::vmec_is_scaler_value</a> (this, id)</td></tr>
-<tr class="memdesc:a383754a3291c20e5769e7cbcae3e79fd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a scaler value.  <a href="namespacevmec__equilibrium.html#a383754a3291c20e5769e7cbcae3e79fd">More...</a><br /></td></tr>
-<tr class="separator:a383754a3291c20e5769e7cbcae3e79fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afd8255c2b4d1657391a66f44f3b3245b"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#afd8255c2b4d1657391a66f44f3b3245b">vmec_equilibrium::vmec_is_1d_array</a> (this, id)</td></tr>
-<tr class="memdesc:afd8255c2b4d1657391a66f44f3b3245b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 1d array.  <a href="namespacevmec__equilibrium.html#afd8255c2b4d1657391a66f44f3b3245b">More...</a><br /></td></tr>
-<tr class="separator:afd8255c2b4d1657391a66f44f3b3245b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8995179b2033cbddfa164b805aaeb406"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406">vmec_equilibrium::vmec_is_2d_array</a> (this, id)</td></tr>
-<tr class="memdesc:a8995179b2033cbddfa164b805aaeb406"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a 2d array.  <a href="namespacevmec__equilibrium.html#a8995179b2033cbddfa164b805aaeb406">More...</a><br /></td></tr>
-<tr class="separator:a8995179b2033cbddfa164b805aaeb406"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a490bc87b33d05f0d697d3f9708e23a75"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75">vmec_equilibrium::vmec_is_recon_param</a> (this, id)</td></tr>
-<tr class="memdesc:a490bc87b33d05f0d697d3f9708e23a75"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a parameter id is a reconstruction parameter.  <a href="namespacevmec__equilibrium.html#a490bc87b33d05f0d697d3f9708e23a75">More...</a><br /></td></tr>
-<tr class="separator:a490bc87b33d05f0d697d3f9708e23a75"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2">vmec_equilibrium::vmec_is_using_point</a> (this)</td></tr>
-<tr class="memdesc:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a the point magnetics are being used.  <a href="namespacevmec__equilibrium.html#aed15211e86e828d27bd6fe2fb2b74ae2">More...</a><br /></td></tr>
-<tr class="separator:aed15211e86e828d27bd6fe2fb2b74ae2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8960e1424ec05154a2ab95bc3ea74237"><td class="memItemLeft" align="right" valign="top">logical function&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">vmec_equilibrium::vmec_converge</a> (this, num_iter, iou, eq_comm, state_flags)</td></tr>
-<tr class="memdesc:a8960e1424ec05154a2ab95bc3ea74237"><td class="mdescLeft">&#160;</td><td class="mdescRight">Solves the VMEC equilibrium.  <a href="namespacevmec__equilibrium.html#a8960e1424ec05154a2ab95bc3ea74237">More...</a><br /></td></tr>
-<tr class="separator:a8960e1424ec05154a2ab95bc3ea74237"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af32bc9eb29e352de8b798cc60e2e7627"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627">vmec_equilibrium::vmec_read_vac_file</a> (this, index, eq_comm)</td></tr>
-<tr class="memdesc:af32bc9eb29e352de8b798cc60e2e7627"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the vacuum magnetic field file.  <a href="namespacevmec__equilibrium.html#af32bc9eb29e352de8b798cc60e2e7627">More...</a><br /></td></tr>
-<tr class="separator:af32bc9eb29e352de8b798cc60e2e7627"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeced22814edb5c90369367fe8ab1fcb0"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aeced22814edb5c90369367fe8ab1fcb0">vmec_equilibrium::vmec_save_state</a> (this)</td></tr>
-<tr class="memdesc:aeced22814edb5c90369367fe8ab1fcb0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the internal state of the equilibrium.  <a href="namespacevmec__equilibrium.html#aeced22814edb5c90369367fe8ab1fcb0">More...</a><br /></td></tr>
-<tr class="separator:aeced22814edb5c90369367fe8ab1fcb0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a57b943ab3a3657eb188595c753695219"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a57b943ab3a3657eb188595c753695219">vmec_equilibrium::vmec_reset_state</a> (this)</td></tr>
-<tr class="memdesc:a57b943ab3a3657eb188595c753695219"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the internal state of the equilibrium.  <a href="namespacevmec__equilibrium.html#a57b943ab3a3657eb188595c753695219">More...</a><br /></td></tr>
-<tr class="separator:a57b943ab3a3657eb188595c753695219"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea915707bad2fe421dc8a77c2d537932"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932">vmec_equilibrium::vmec_write</a> (this, iou)</td></tr>
-<tr class="memdesc:aea915707bad2fe421dc8a77c2d537932"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out the equilibrium to an output file.  <a href="namespacevmec__equilibrium.html#aea915707bad2fe421dc8a77c2d537932">More...</a><br /></td></tr>
-<tr class="separator:aea915707bad2fe421dc8a77c2d537932"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3949073a7d7ce5b9b7365d8806e99f59"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a3949073a7d7ce5b9b7365d8806e99f59">vmec_equilibrium::vmec_write_input</a> (this, current_step)</td></tr>
-<tr class="memdesc:a3949073a7d7ce5b9b7365d8806e99f59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write the current valid input.  <a href="namespacevmec__equilibrium.html#a3949073a7d7ce5b9b7365d8806e99f59">More...</a><br /></td></tr>
-<tr class="separator:a3949073a7d7ce5b9b7365d8806e99f59"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6727b4c1743086f998f83a72e2bafe37"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37">vmec_equilibrium::vmec_def_result</a> (this, result_ncid, maxnsetps_dim_id)</td></tr>
-<tr class="memdesc:a6727b4c1743086f998f83a72e2bafe37"><td class="mdescLeft">&#160;</td><td class="mdescRight">Define NetCDF variables for the result file.  <a href="namespacevmec__equilibrium.html#a6727b4c1743086f998f83a72e2bafe37">More...</a><br /></td></tr>
-<tr class="separator:a6727b4c1743086f998f83a72e2bafe37"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af2834de9b8119aa4a0e70250df21e96a"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af2834de9b8119aa4a0e70250df21e96a">vmec_equilibrium::vmec_write_init_data</a> (this, result_ncid)</td></tr>
-<tr class="memdesc:af2834de9b8119aa4a0e70250df21e96a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write inital data to NetCDF result file.  <a href="namespacevmec__equilibrium.html#af2834de9b8119aa4a0e70250df21e96a">More...</a><br /></td></tr>
-<tr class="separator:af2834de9b8119aa4a0e70250df21e96a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a84eefb3c064582b6c393f00a5a7dce78"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a84eefb3c064582b6c393f00a5a7dce78">vmec_equilibrium::vmec_write_step_data</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:a84eefb3c064582b6c393f00a5a7dce78"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write step data to NetCDF result file.  <a href="namespacevmec__equilibrium.html#a84eefb3c064582b6c393f00a5a7dce78">More...</a><br /></td></tr>
-<tr class="separator:a84eefb3c064582b6c393f00a5a7dce78"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd">vmec_equilibrium::vmec_restart</a> (this, result_ncid, current_step)</td></tr>
-<tr class="memdesc:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Restart vmec from the result file.  <a href="namespacevmec__equilibrium.html#aff8a8dae3f1900d997af8f18d65c8ebd">More...</a><br /></td></tr>
-<tr class="separator:aff8a8dae3f1900d997af8f18d65c8ebd"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8fd9cef3fc180dadb977b7a797b2b698"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a8fd9cef3fc180dadb977b7a797b2b698">vmec_equilibrium::vmec_sync_state</a> (this, recon_comm)</td></tr>
-<tr class="memdesc:a8fd9cef3fc180dadb977b7a797b2b698"><td class="mdescLeft">&#160;</td><td class="mdescRight">Syncronize the vmec state to children.  <a href="namespacevmec__equilibrium.html#a8fd9cef3fc180dadb977b7a797b2b698">More...</a><br /></td></tr>
-<tr class="separator:a8fd9cef3fc180dadb977b7a797b2b698"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae90a5479a5b49f344dd06bd649e1a18b"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ae90a5479a5b49f344dd06bd649e1a18b">vmec_equilibrium::vmec_sync_child</a> (this, index, recon_comm)</td></tr>
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-<tr class="separator:ae90a5479a5b49f344dd06bd649e1a18b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a061ad2b9b7b412d4b7277cfabe513b64"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset the fixed boundary coefficients.  <a href="namespacevmec__equilibrium.html#a061ad2b9b7b412d4b7277cfabe513b64">More...</a><br /></td></tr>
-<tr class="separator:a061ad2b9b7b412d4b7277cfabe513b64"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table><table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
-Variables</h2></td></tr>
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-<tr class="separator:a0d27af7c84f2f2a969807eb35f71080e"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a0eb05159129a5788d1a98abca4bc79e4"><td class="memItemLeft" align="right" valign="top"><a id="a0eb05159129a5788d1a98abca4bc79e4"></a>
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-<tr class="memdesc:a0eb05159129a5788d1a98abca4bc79e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of segment current profile s poitions. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a0eb05159129a5788d1a98abca4bc79e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="separator:a1ba47ec366b175b007b6a0a299dfed19"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memitem:a6f568a0001657ce317729cad2d3334ad"><td class="memItemLeft" align="right" valign="top"><a id="a6f568a0001657ce317729cad2d3334ad"></a>
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-<tr class="separator:a6f568a0001657ce317729cad2d3334ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3417820d16d8806ac3aa57d8b2ae8d76"><td class="memItemLeft" align="right" valign="top"><a id="a3417820d16d8806ac3aa57d8b2ae8d76"></a>
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-<tr class="separator:a3417820d16d8806ac3aa57d8b2ae8d76"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a75000b9085ae228243f7e28f6f313fb1"><td class="memItemLeft" align="right" valign="top"><a id="a75000b9085ae228243f7e28f6f313fb1"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a75000b9085ae228243f7e28f6f313fb1">vmec_equilibrium::vmec_bloat_id</a> = 22</td></tr>
-<tr class="memdesc:a75000b9085ae228243f7e28f6f313fb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a75000b9085ae228243f7e28f6f313fb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ab7611b5edf6b8a9f4395159551985799"><td class="memItemLeft" align="right" valign="top"><a id="ab7611b5edf6b8a9f4395159551985799"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ab7611b5edf6b8a9f4395159551985799">vmec_equilibrium::vmec_rbc_id</a> = 23</td></tr>
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-<tr class="separator:ab7611b5edf6b8a9f4395159551985799"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="memItemLeft" align="right" valign="top"><a id="a5879e5c983e5c247f6a91ff7ce371bd4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5879e5c983e5c247f6a91ff7ce371bd4">vmec_equilibrium::vmec_zbs_id</a> = 24</td></tr>
-<tr class="memdesc:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary Z sine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a5879e5c983e5c247f6a91ff7ce371bd4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6d3f41e4712891dac41771468dd70501"><td class="memItemLeft" align="right" valign="top"><a id="a6d3f41e4712891dac41771468dd70501"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a6d3f41e4712891dac41771468dd70501">vmec_equilibrium::vmec_rbs_id</a> = 25</td></tr>
-<tr class="memdesc:a6d3f41e4712891dac41771468dd70501"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary R sine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a6d3f41e4712891dac41771468dd70501"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa532ceafa08a77eacff84a693d715873"><td class="memItemLeft" align="right" valign="top"><a id="aa532ceafa08a77eacff84a693d715873"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#aa532ceafa08a77eacff84a693d715873">vmec_equilibrium::vmec_zbc_id</a> = 26</td></tr>
-<tr class="memdesc:aa532ceafa08a77eacff84a693d715873"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of outer boundary Z cosine coeffiecents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:aa532ceafa08a77eacff84a693d715873"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ad461a717dd2c684868750403c2b36c1c"><td class="memItemLeft" align="right" valign="top"><a id="ad461a717dd2c684868750403c2b36c1c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ad461a717dd2c684868750403c2b36c1c">vmec_equilibrium::vmec_extcur_id</a> = 27</td></tr>
-<tr class="memdesc:ad461a717dd2c684868750403c2b36c1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">1D Array of external currents. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:ad461a717dd2c684868750403c2b36c1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="memItemLeft" align="right" valign="top"><a id="adebd6316a6f0ce6fc3d816e9fc4d543c"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#adebd6316a6f0ce6fc3d816e9fc4d543c">vmec_equilibrium::vmec_curtor_id</a> = 28</td></tr>
-<tr class="memdesc:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="mdescLeft">&#160;</td><td class="mdescRight">The toroidal current. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:adebd6316a6f0ce6fc3d816e9fc4d543c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a489b23e08c98da132bde52d15c30c6c4"><td class="memItemLeft" align="right" valign="top"><a id="a489b23e08c98da132bde52d15c30c6c4"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a489b23e08c98da132bde52d15c30c6c4">vmec_equilibrium::vmec_phiedge_id</a> = 29</td></tr>
-<tr class="memdesc:a489b23e08c98da132bde52d15c30c6c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">The edge magnetic flux. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a489b23e08c98da132bde52d15c30c6c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a842bf02fcc90038571786b127d36f9fb"><td class="memItemLeft" align="right" valign="top"><a id="a842bf02fcc90038571786b127d36f9fb"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a842bf02fcc90038571786b127d36f9fb">vmec_equilibrium::vmec_pres_scale_id</a> = 30</td></tr>
-<tr class="memdesc:a842bf02fcc90038571786b127d36f9fb"><td class="mdescLeft">&#160;</td><td class="mdescRight">The scaling parameter for the pressure. Defined in <a class="el" href="namespacevmec__input.html">vmec_input</a>. <br /></td></tr>
-<tr class="separator:a842bf02fcc90038571786b127d36f9fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a33baf45e2a0611d0b465fdbc5675fad5"><td class="memItemLeft" align="right" valign="top"><a id="a33baf45e2a0611d0b465fdbc5675fad5"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a33baf45e2a0611d0b465fdbc5675fad5">vmec_equilibrium::vmec_rmnc_id</a> = 31</td></tr>
-<tr class="memdesc:a33baf45e2a0611d0b465fdbc5675fad5"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface R cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a33baf45e2a0611d0b465fdbc5675fad5"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a1781d3f24016d7ded23dae829ed5af69"><td class="memItemLeft" align="right" valign="top"><a id="a1781d3f24016d7ded23dae829ed5af69"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a1781d3f24016d7ded23dae829ed5af69">vmec_equilibrium::vmec_zmns_id</a> = 32</td></tr>
-<tr class="memdesc:a1781d3f24016d7ded23dae829ed5af69"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface Z sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a1781d3f24016d7ded23dae829ed5af69"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a54fa67fbdd566b876fd47360aae62270"><td class="memItemLeft" align="right" valign="top"><a id="a54fa67fbdd566b876fd47360aae62270"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a54fa67fbdd566b876fd47360aae62270">vmec_equilibrium::vmec_lmns_id</a> = 33</td></tr>
-<tr class="memdesc:a54fa67fbdd566b876fd47360aae62270"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface lambda cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a54fa67fbdd566b876fd47360aae62270"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a07373f3ebb67b7811df5e9e67f03c078"><td class="memItemLeft" align="right" valign="top"><a id="a07373f3ebb67b7811df5e9e67f03c078"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a07373f3ebb67b7811df5e9e67f03c078">vmec_equilibrium::vmec_gmnc_id</a> = 34</td></tr>
-<tr class="memdesc:a07373f3ebb67b7811df5e9e67f03c078"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface g cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a07373f3ebb67b7811df5e9e67f03c078"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a882a76ad6b475fba0aff114a22ba7a01"><td class="memItemLeft" align="right" valign="top"><a id="a882a76ad6b475fba0aff114a22ba7a01"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a882a76ad6b475fba0aff114a22ba7a01">vmec_equilibrium::vmec_bsubsmns_id</a> = 35</td></tr>
-<tr class="memdesc:a882a76ad6b475fba0aff114a22ba7a01"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_s sine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a882a76ad6b475fba0aff114a22ba7a01"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a985aa5ddf6d2efb83c79b18bdfe46596"><td class="memItemLeft" align="right" valign="top"><a id="a985aa5ddf6d2efb83c79b18bdfe46596"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a985aa5ddf6d2efb83c79b18bdfe46596">vmec_equilibrium::vmec_bsubumnc_id</a> = 36</td></tr>
-<tr class="memdesc:a985aa5ddf6d2efb83c79b18bdfe46596"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_u cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:a985aa5ddf6d2efb83c79b18bdfe46596"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af0a3f5865980531986dd169bfd423bd0"><td class="memItemLeft" align="right" valign="top"><a id="af0a3f5865980531986dd169bfd423bd0"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#af0a3f5865980531986dd169bfd423bd0">vmec_equilibrium::vmec_bsubvmnc_id</a> = 37</td></tr>
-<tr class="memdesc:af0a3f5865980531986dd169bfd423bd0"><td class="mdescLeft">&#160;</td><td class="mdescRight">2D Array of surface B_v cosine coeffiecents. Defined in read_wout_mod. <br /></td></tr>
-<tr class="separator:af0a3f5865980531986dd169bfd423bd0"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ae754d08882cf5d5b9ac61b4fc1bcea32"><td class="memItemLeft" align="right" valign="top"><a id="ae754d08882cf5d5b9ac61b4fc1bcea32"></a>
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-<tr class="memitem:ae7f7ea0d96eed5652d3129cdbda49983"><td class="memItemLeft" align="right" valign="top"><a id="ae7f7ea0d96eed5652d3129cdbda49983"></a>
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-<tr class="memitem:a871f244a3ae6e536ccb86941539ca75b"><td class="memItemLeft" align="right" valign="top"><a id="a871f244a3ae6e536ccb86941539ca75b"></a>
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-<tr class="memitem:af4f2edd1d01924f02f6f034c98ccacfb"><td class="memItemLeft" align="right" valign="top"><a id="af4f2edd1d01924f02f6f034c98ccacfb"></a>
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-<tr class="memitem:ae6576499bb805e1a2f82cbe9b1cf2758"><td class="memItemLeft" align="right" valign="top"><a id="ae6576499bb805e1a2f82cbe9b1cf2758"></a>
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-<tr class="memitem:a08b56327e084607b422da74e52f3dd05"><td class="memItemLeft" align="right" valign="top"><a id="a08b56327e084607b422da74e52f3dd05"></a>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a639e38b37362b53fba6983ace6855c03">vmec_equilibrium::vmec_pp_ti_af_id</a> = 70</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a31e14ef4dfede4ea2ce800c6fe7b67e4">vmec_equilibrium::vmec_vvc_smaleli_id</a> = 71</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a298751105b23c10ee1ab9a3e220cc613">vmec_equilibrium::vmec_betapol_id</a> = 74</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2a7a4c08d59d8dc8dfe80ce8e711ee99">vmec_equilibrium::vmec_betator_id</a> = 75</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a2a5483a5d6dbaa2ee33c06ef67b5dc89">vmec_equilibrium::vmec_betaxis_id</a> = 76</td></tr>
-<tr class="memdesc:a2a5483a5d6dbaa2ee33c06ef67b5dc89"><td class="mdescLeft">&#160;</td><td class="mdescRight">Beta on axis. Defined in read_wout_mod. <br /></td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a378bedd0a2c9bec3416e31f8388450b8">vmec_equilibrium::vmec_jcurv_id</a> = 78</td></tr>
-<tr class="memdesc:a378bedd0a2c9bec3416e31f8388450b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Toroidal current density. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memitem:abe673b609b43980702991847b92a8a2d"><td class="memItemLeft" align="right" valign="top"><a id="abe673b609b43980702991847b92a8a2d"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#abe673b609b43980702991847b92a8a2d">vmec_equilibrium::vmec_jdotb_id</a> = 79</td></tr>
-<tr class="memdesc:abe673b609b43980702991847b92a8a2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current density in direction of b field. Defined in read_wout_mod. <br /></td></tr>
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-<tr class="memitem:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="memItemLeft" align="right" valign="top"><a id="a58c5b0f5f2d05165a7ca39de57dfba65"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a58c5b0f5f2d05165a7ca39de57dfba65">vmec_equilibrium::vmec_phi_offset_id</a> = 80</td></tr>
-<tr class="memdesc:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="mdescLeft">&#160;</td><td class="mdescRight">Plasma Phi offset. This is a parameter to allow changing the phi angle of a quasi helical state in an RFP. Defined in <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>. <br /></td></tr>
-<tr class="separator:a58c5b0f5f2d05165a7ca39de57dfba65"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="memItemLeft" align="right" valign="top"><a id="a536977d2cc66ceb4db1bb1d8c6ba6269"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a536977d2cc66ceb4db1bb1d8c6ba6269">vmec_equilibrium::vmec_z_offset_id</a> = 81</td></tr>
-<tr class="memdesc:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="mdescLeft">&#160;</td><td class="mdescRight">Plasma z offset. This is a parameter to allow changing the vertical shift of the plasma. <br /></td></tr>
-<tr class="separator:a536977d2cc66ceb4db1bb1d8c6ba6269"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5851534253f23e5c91873d4651850e36"><td class="memItemLeft" align="right" valign="top"><a id="a5851534253f23e5c91873d4651850e36"></a>
-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#a5851534253f23e5c91873d4651850e36">vmec_equilibrium::magnetic_cache_vc_min_grid_points</a> = 101</td></tr>
-<tr class="memdesc:a5851534253f23e5c91873d4651850e36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual casing grid points for vacuum field measurements. <br /></td></tr>
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-<tr class="memitem:ac12d8f53d8ca1235ab5bbf33128e04bb"><td class="memItemLeft" align="right" valign="top"><a id="ac12d8f53d8ca1235ab5bbf33128e04bb"></a>
-real(rprec), parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__equilibrium.html#ac12d8f53d8ca1235ab5bbf33128e04bb">vmec_equilibrium::magnetic_cache_vc_grid_dim</a> = 0.01</td></tr>
-<tr class="memdesc:ac12d8f53d8ca1235ab5bbf33128e04bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual casing grid dimension. <br /></td></tr>
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-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacevmec__equilibrium.html">vmec_equilibrium</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-</div>
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-  <div class="summary">
-<a href="#nested-classes">Data Types</a> &#124;
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-<a href="#func-members">Functions/Subroutines</a>  </div>
-  <div class="headertitle">
-<div class="title">vmec_file.f File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Contains module <a class="el" href="namespacevmec__file.html">vmec_file</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
-Data Types</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">interface &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file::vmec_file_class</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-<tr class="memdesc:a2a134b867ea82ff10671fb3d656966f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object.  <a href="namespacevmec__file.html#a2a134b867ea82ff10671fb3d656966f8">More...</a><br /></td></tr>
-<tr class="separator:a2a134b867ea82ff10671fb3d656966f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a80c64481e8fa94dbe54b34b7315f11bc"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__file.html#a80c64481e8fa94dbe54b34b7315f11bc">vmec_file::vmec_file_destruct</a> (this)</td></tr>
-<tr class="memdesc:a80c64481e8fa94dbe54b34b7315f11bc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Deconstruct a <a class="el" href="structvmec__file_1_1vmec__file__class.html">vmec_file_class</a> object.  <a href="namespacevmec__file.html#a80c64481e8fa94dbe54b34b7315f11bc">More...</a><br /></td></tr>
-<tr class="separator:a80c64481e8fa94dbe54b34b7315f11bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Contains module <a class="el" href="namespacevmec__file.html">vmec_file</a>. </p>
-</div></div><!-- contents -->
-<!-- start footer part -->
-<hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
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-<div class="title">vmec_input.f File Reference</div>  </div>
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-<p>Contains the module <a class="el" href="namespacevmec__input.html">vmec_input</a>.  
-<a href="#details">More...</a></p>
-<table class="memberdecls">
-<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
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-<tr class="memitem:namespacevmec__input"><td class="memItemLeft" align="right" valign="top">module &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html">vmec_input</a></td></tr>
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-integer, parameter&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a69029921e1bc1da56931bdfeb003abce">vmec_input::mpol_default</a> = 6</td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a9dfcdd1da56d1db5a9b609a8b7a0144f">vmec_input::gamma</a></td></tr>
-<tr class="memdesc:a9dfcdd1da56d1db5a9b609a8b7a0144f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adiabatic factor for the pressure perturbation. <br /></td></tr>
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-integer, dimension(max_grids)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#aac08a03ceff82b6d20dc944df04f77e7">vmec_input::niter_array</a></td></tr>
-<tr class="memdesc:aac08a03ceff82b6d20dc944df04f77e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of iterations for the multigrid runs. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a9e884375c83f4df99b09234573dae7e8">vmec_input::pre_niter</a></td></tr>
-<tr class="memdesc:a9e884375c83f4df99b09234573dae7e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of iterations to run after the preconditoner is activated. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a6aaf949325c7cad6ef734c73897b1eb5">vmec_input::time_slice</a></td></tr>
-<tr class="memdesc:a6aaf949325c7cad6ef734c73897b1eb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time index value to label the output files. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#aeb71421d68cf4292a19b119b9bfb25fe">vmec_input::nstep</a></td></tr>
-<tr class="memdesc:aeb71421d68cf4292a19b119b9bfb25fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of iterations between screen output. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a8c41130955e25f6268587e769ca668eb">vmec_input::nvacskip</a></td></tr>
-<tr class="memdesc:a8c41130955e25f6268587e769ca668eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of iterations between vacuum responses. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#acfe484dfe2745965f6ea403fc093211d">vmec_input::delt</a></td></tr>
-<tr class="memdesc:acfe484dfe2745965f6ea403fc093211d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time step value for minimization. <br /></td></tr>
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-real(rprec), dimension(max_grids)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a6befeabae016fec7224b78bd9a603519">vmec_input::ftol_array</a></td></tr>
-<tr class="memdesc:a6befeabae016fec7224b78bd9a603519"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of force tolarances for the multigrid runs. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a4708b300fea260a159648ca47c59ffdc">vmec_input::tcon0</a></td></tr>
-<tr class="memdesc:a4708b300fea260a159648ca47c59ffdc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weight factor for constraint force. <br /></td></tr>
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-character(len=short_name)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a545f7f4ae0d429daa57c4aaa43717fd9">vmec_input::precon_type</a></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a3114e8b0a98ad959de2c3e0f21e32d2f">vmec_input::prec2d_threshold</a></td></tr>
-<tr class="memdesc:a3114e8b0a98ad959de2c3e0f21e32d2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Force tolarance where the preconditioner is turned on. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a12e6ea94c7c9767b9b080367fbbd7d58">vmec_input::lgiveup</a></td></tr>
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-<tr class="memdesc:a6a4752f44aa411ed9e9cb05cc0b4e676"><td class="mdescLeft">&#160;</td><td class="mdescRight">Theshold tolarance for early exit. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a2da0ad312394672956e0fcae3c1e562f">vmec_input::lmove_axis</a></td></tr>
-<tr class="memdesc:a2da0ad312394672956e0fcae3c1e562f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allow movement of the magnetic axis. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#aeee8ba3ec36bdee5af9386d3c974217c">vmec_input::lmac</a></td></tr>
-<tr class="memdesc:aeee8ba3ec36bdee5af9386d3c974217c"><td class="mdescLeft">&#160;</td><td class="mdescRight">UNKNOWN. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a12d5d94980d7fd31fea3b50026fd13b5">vmec_input::lforbal</a></td></tr>
-<tr class="memdesc:a12d5d94980d7fd31fea3b50026fd13b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use non-variational forces to ensure force balance. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#aa44376c0bdcded8b56e0fe70c11c6553">vmec_input::lasym</a></td></tr>
-<tr class="memdesc:aa44376c0bdcded8b56e0fe70c11c6553"><td class="mdescLeft">&#160;</td><td class="mdescRight">Allow non-stellarator symmetric terms. <br /></td></tr>
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-<tr class="memitem:a10a6fb946588f8a10c060c4fa118b01a"><td class="memItemLeft" align="right" valign="top"><a id="a10a6fb946588f8a10c060c4fa118b01a"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a10a6fb946588f8a10c060c4fa118b01a">vmec_input::lrfp</a></td></tr>
-<tr class="memdesc:a10a6fb946588f8a10c060c4fa118b01a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Run in RFP mode. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ab151be07a1d183aa2b518ad3de7c9aa2">vmec_input::loldout</a></td></tr>
-<tr class="memdesc:ab151be07a1d183aa2b518ad3de7c9aa2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use text output when writting wout files. <br /></td></tr>
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-<tr class="memitem:a64e922513970a4e726577853512ed2cb"><td class="memItemLeft" align="right" valign="top"><a id="a64e922513970a4e726577853512ed2cb"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a64e922513970a4e726577853512ed2cb">vmec_input::ldiagno</a></td></tr>
-<tr class="memdesc:a64e922513970a4e726577853512ed2cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get output for diagno 1.0 and 1.5. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ae3eadff8c916355456de0affcbcf9722">vmec_input::lbsubs</a></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a62905ea9c2036d628d902ede954da108">vmec_input::lfull3d1out</a></td></tr>
-<tr class="memdesc:a62905ea9c2036d628d902ede954da108"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out full threed1 file if force tolarance is not met. <br /></td></tr>
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-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#aeb2595dff475888cae197b2514466c94">vmec_input::lwouttxt</a></td></tr>
-<tr class="memdesc:aeb2595dff475888cae197b2514466c94"><td class="mdescLeft">&#160;</td><td class="mdescRight">Write out text based woutfile. <br /></td></tr>
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-<tr class="memitem:a36fb0329a69072940e10f7482eedc9ba"><td class="memItemLeft" align="right" valign="top"><a id="a36fb0329a69072940e10f7482eedc9ba"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a36fb0329a69072940e10f7482eedc9ba">vmec_input::l_v3fit</a></td></tr>
-<tr class="memdesc:a36fb0329a69072940e10f7482eedc9ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">VMEC called from inside v3fit. <br /></td></tr>
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-<tr class="memitem:a5edab550626b061c25f8f9cee7ff4984"><td class="memItemLeft" align="right" valign="top"><a id="a5edab550626b061c25f8f9cee7ff4984"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a5edab550626b061c25f8f9cee7ff4984">vmec_input::lnyquist</a></td></tr>
-<tr class="memdesc:a5edab550626b061c25f8f9cee7ff4984"><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out full nyquest spectrum. When flase trunate the spectrum to just the mpol, ntor values. <br /></td></tr>
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-integer, dimension(max_grids)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a7933cb9c42f11c8609e7ddb408ddd536">vmec_input::ns_array</a></td></tr>
-<tr class="memdesc:a7933cb9c42f11c8609e7ddb408ddd536"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of radial flux surfaces for each grid size. <br /></td></tr>
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-real(rprec), dimension(max_profile)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#af13b8bf7b06354a9aa444782a1d4207b">vmec_input::aphi</a></td></tr>
-<tr class="memdesc:af13b8bf7b06354a9aa444782a1d4207b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial surface redistribution factors. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">vmec_input::mpol</a></td></tr>
-<tr class="memdesc:ad23b27aa1648d81036ade421ef1a0944"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of poloidal modes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">vmec_input::ntor</a></td></tr>
-<tr class="memdesc:ac6f2567548169008268f14d0bc8ca4b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Largest value of the toroidal modes. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">vmec_input::nfp</a></td></tr>
-<tr class="memdesc:ab0cc4e8af292085788e013dffad82886"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of field periods. <br /></td></tr>
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-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a2db2a2c181b423ace37600fd6b49820a">vmec_input::ntheta</a></td></tr>
-<tr class="memdesc:a2db2a2c181b423ace37600fd6b49820a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of poloidal grid points. <br /></td></tr>
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-<tr class="memitem:acdf327762893b41f2bbe147f5825e396"><td class="memItemLeft" align="right" valign="top"><a id="acdf327762893b41f2bbe147f5825e396"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#acdf327762893b41f2bbe147f5825e396">vmec_input::nzeta</a></td></tr>
-<tr class="memdesc:acdf327762893b41f2bbe147f5825e396"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of toroidal grid points. <br /></td></tr>
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-<tr class="memitem:a2a939cc67d1bd46be74f843de71a6b0e"><td class="memItemLeft" align="right" valign="top"><a id="a2a939cc67d1bd46be74f843de71a6b0e"></a>
-logical&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a2a939cc67d1bd46be74f843de71a6b0e">vmec_input::lfreeb</a></td></tr>
-<tr class="memdesc:a2a939cc67d1bd46be74f843de71a6b0e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Use external fields to determine the boundary shape. <br /></td></tr>
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-<tr class="memitem:a5e0be1292a877581ba37d1de76d70f92"><td class="memItemLeft" align="right" valign="top">real(rprec), dimension(nigroup), target&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a5e0be1292a877581ba37d1de76d70f92">vmec_input::extcur</a></td></tr>
-<tr class="memdesc:a5e0be1292a877581ba37d1de76d70f92"><td class="mdescLeft">&#160;</td><td class="mdescRight">Array of external field coil currents.  <a href="namespacevmec__input.html#a5e0be1292a877581ba37d1de76d70f92">More...</a><br /></td></tr>
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-<tr class="memitem:a0543ff7c83bc6ccda2793399ce564847"><td class="memItemLeft" align="right" valign="top"><a id="a0543ff7c83bc6ccda2793399ce564847"></a>
-character(len=long_name)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a0543ff7c83bc6ccda2793399ce564847">vmec_input::mgrid_file</a></td></tr>
-<tr class="memdesc:a0543ff7c83bc6ccda2793399ce564847"><td class="mdescLeft">&#160;</td><td class="mdescRight">Path to the mgrid file. <br /></td></tr>
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-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a16e97b659b8f357262c03090ca8ae960">vmec_input::curtor</a></td></tr>
-<tr class="memdesc:a16e97b659b8f357262c03090ca8ae960"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total toroidal current. <br /></td></tr>
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-<tr class="memitem:af26e121e53eae32bc88ceaade7c767d6"><td class="memItemLeft" align="right" valign="top"><a id="af26e121e53eae32bc88ceaade7c767d6"></a>
-integer&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#af26e121e53eae32bc88ceaade7c767d6">vmec_input::ncurr</a></td></tr>
-<tr class="memdesc:af26e121e53eae32bc88ceaade7c767d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Control to use current profile. <br /></td></tr>
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-character(len=short_name)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a6f74b9f6150e9d32ebb74b169f8c3acd">vmec_input::pcurr_type</a></td></tr>
-<tr class="memdesc:a6f74b9f6150e9d32ebb74b169f8c3acd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current profile type. <br /></td></tr>
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-real(rprec), dimension(0:max_profile)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a498f47d198fd1d6d8b4610b5baee1c8e">vmec_input::ac</a></td></tr>
-<tr class="memdesc:a498f47d198fd1d6d8b4610b5baee1c8e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parameterized current profile coefficents. <br /></td></tr>
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-real(rprec), dimension(ndatafmax)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a9ec244c7cffbffd75b564a47d9d17c7e">vmec_input::ac_aux_s</a></td></tr>
-<tr class="memdesc:a9ec244c7cffbffd75b564a47d9d17c7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Radial knot position for the current profile splines. <br /></td></tr>
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-real(rprec), dimension(ndatafmax)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a93ef97daaf0d372f7c9899f3d99f46a6">vmec_input::ac_aux_f</a></td></tr>
-<tr class="memdesc:a93ef97daaf0d372f7c9899f3d99f46a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Knot amplitudes for the current profile splines. <br /></td></tr>
-<tr class="separator:a93ef97daaf0d372f7c9899f3d99f46a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a9e3e442cef77968189c13ca810c9b5c9"><td class="memItemLeft" align="right" valign="top"><a id="a9e3e442cef77968189c13ca810c9b5c9"></a>
-real(rprec)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a9e3e442cef77968189c13ca810c9b5c9">vmec_input::bloat</a></td></tr>
-<tr class="memdesc:a9e3e442cef77968189c13ca810c9b5c9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Expansion factor for the current profile. <br /></td></tr>
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-<tr class="memitem:a58838e9919d4190523325e6f93df68c3"><td class="memItemLeft" align="right" valign="top"><a id="a58838e9919d4190523325e6f93df68c3"></a>
-character(len=short_name)&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacevmec__input.html#a58838e9919d4190523325e6f93df68c3">vmec_input::piota_type</a></td></tr>
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-<a href="vmec__quantities_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment"></span><span class="comment">//******************************************************************************</span></div>
-<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160; </div>
-<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#ifndef vmec_quantities_hpp</span></div>
-<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#define vmec_quantities_hpp</span></div>
-<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160; </div>
-<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
-<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;netcdf.h&gt;</span></div>
-<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;array&gt;</span></div>
-<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160; </div>
-<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="grid__quantity_8hpp.html">grid_quantity.hpp</a>&quot;</span></div>
-<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160; </div>
-<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00020"></a><span class="lineno"><a class="line" href="classvmec__quantities.html">   20</a></span>&#160;<span class="keyword">class </span><a class="code" href="classvmec__quantities.html">vmec_quantities</a> {</div>
-<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="keyword">public</span>:</div>
-<div class="line"><a name="l00023"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">   23</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__grid.html">vmec_grid&lt;full_grid&gt;</a> <a class="code" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">test_full</a>;</div>
-<div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">   25</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;full_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">r</a>;</div>
-<div class="line"><a name="l00027"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a563578864bee7322a4bd3fbc5fa911f7">   27</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#a563578864bee7322a4bd3fbc5fa911f7">drds</a>;</div>
-<div class="line"><a name="l00029"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">   29</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;full_grid, sine&gt;</a> <a class="code" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">z</a>;</div>
-<div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#adbd10a1287f2750bd901df3cb5713c0f">   31</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classvmec__quantities.html#adbd10a1287f2750bd901df3cb5713c0f">dzds</a>;</div>
-<div class="line"><a name="l00033"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">   33</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__grid.html">vmec_grid&lt;full_grid&gt;</a> <a class="code" href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">phipf</a>;</div>
-<div class="line"><a name="l00035"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#ac9a49ce630f3e339bd8721288be2c205">   35</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__grid.html">vmec_grid&lt;full_grid&gt;</a> <a class="code" href="classvmec__quantities.html#ac9a49ce630f3e339bd8721288be2c205">chipf</a>;</div>
-<div class="line"><a name="l00037"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">   37</a></span>&#160;    <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">signj</a>;</div>
-<div class="line"><a name="l00039"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">   39</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">j</a>;</div>
-<div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a6c17f6674fa261ce4cd918ccdebb7e98">   41</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#a6c17f6674fa261ce4cd918ccdebb7e98">bsupu</a>;</div>
-<div class="line"><a name="l00043"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">   43</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">bsupv</a>;</div>
-<div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a49f4c225ed57b741b2770272d4b03593">   45</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, sine&gt;</a> <a class="code" href="classvmec__quantities.html#a49f4c225ed57b741b2770272d4b03593">bsubs</a>;</div>
-<div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#af9dc78eca368368eb5b4971669e2eb2a">   47</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#af9dc78eca368368eb5b4971669e2eb2a">bsubu</a>;</div>
-<div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#aec9adf33bbdc742091fd7f80424d3fd3">   49</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;half_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#aec9adf33bbdc742091fd7f80424d3fd3">bsubv</a>;</div>
-<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a32625a70f54782188f5c24d4aca1e936">   51</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;full_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#a32625a70f54782188f5c24d4aca1e936">jksupu</a>;</div>
-<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a15ccf364ed023200a9f343ed020393d3">   53</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__fourier.html">vmec_fourier&lt;full_grid, cosine&gt;</a> <a class="code" href="classvmec__quantities.html#a15ccf364ed023200a9f343ed020393d3">jksupv</a>;</div>
-<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#aebe1228702d63cc0205e7c49748a7da2">   55</a></span>&#160;    <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#aebe1228702d63cc0205e7c49748a7da2">curtor</a>;</div>
-<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">   57</a></span>&#160;    <span class="keyword">const</span> <a class="code" href="classvmec__grid.html">vmec_grid&lt;full_grid&gt;</a> <a class="code" href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">p</a>;</div>
-<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160; </div>
-<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a31d2690604dcfb331cbb9497c966f995">   66</a></span>&#160;    <a class="code" href="classvmec__quantities.html#a31d2690604dcfb331cbb9497c966f995">vmec_quantities</a>(<span class="keyword">const</span> std::string &amp;<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>) :</div>
-<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <a class="code" href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">test_full</a>(<a class="code" href="classvmec__quantities.html#abbbd7b0cacfb1805db776642147b5420">make_full</a>()),</div>
-<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <a class="code" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">r</a>(<a class="code" href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">load_fourier</a>&lt;<a class="code" href="classfull__grid.html">full_grid</a>, <a class="code" href="classcosine.html">cosine</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;rmnc&quot;</span>)),</div>
-<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    <a class="code" href="classvmec__quantities.html#a563578864bee7322a4bd3fbc5fa911f7">drds</a>(<a class="code" href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">to_prime</a>(<a class="code" href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">r</a>)),</div>
-<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <a class="code" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">z</a>(<a class="code" href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">load_fourier</a>&lt;<a class="code" href="classfull__grid.html">full_grid</a>, <a class="code" href="classsine.html">sine</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;zmns&quot;</span>)),</div>
-<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    <a class="code" href="classvmec__quantities.html#adbd10a1287f2750bd901df3cb5713c0f">dzds</a>(<a class="code" href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">to_prime</a>(<a class="code" href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">z</a>)),</div>
-<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    <a class="code" href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">phipf</a>(<a class="code" href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">load</a>&lt;<a class="code" href="classfull__grid.html">full_grid</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;phipf&quot;</span>)),</div>
-<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    <a class="code" href="classvmec__quantities.html#ac9a49ce630f3e339bd8721288be2c205">chipf</a>(<a class="code" href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">load</a>&lt;<a class="code" href="classfull__grid.html">full_grid</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;chipf&quot;</span>)),</div>
-<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    <a class="code" href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">signj</a>(<a class="code" href="classvmec__quantities.html#a664e01e407530dec2bb8946fdb386b85">load_scalar</a>&lt;int&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;signgs&quot;</span>)),</div>
-<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;    <a class="code" href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">j</a>(<a class="code" href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">load_fourier_nyq</a>&lt;<a class="code" href="classhalf__grid.html">half_grid</a>, <a class="code" href="classcosine.html">cosine</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;gmnc&quot;</span>)),</div>
-<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    <a class="code" href="classvmec__quantities.html#a6c17f6674fa261ce4cd918ccdebb7e98">bsupu</a>(<a class="code" href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">load_fourier_nyq</a>&lt;<a class="code" href="classhalf__grid.html">half_grid</a>, <a class="code" href="classcosine.html">cosine</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;bsupumnc&quot;</span>)),</div>
-<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    <a class="code" href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">bsupv</a>(<a class="code" href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">load_fourier_nyq</a>&lt;<a class="code" href="classhalf__grid.html">half_grid</a>, <a class="code" href="classcosine.html">cosine</a>&gt; (<a class="code" href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">wout_file</a>, <span class="stringliteral">&quot;bsupvmnc&quot;</span>)),</div>
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-<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;    <span class="keyword">template</span>&lt;<span class="keyword">class</span> GIRD_CLASS, <span class="keyword">class</span> PARITY&gt;</div>
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-<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160; </div>
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-<div class="line"><a name="l00413"></a><span class="lineno">  413</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00421"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a98d4a605d60d6be1fa3dca89a50a90ea">  421</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#a98d4a605d60d6be1fa3dca89a50a90ea">get_bsupu</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00444"></a><span class="lineno">  444</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00456"></a><span class="lineno">  456</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00468"></a><span class="lineno">  468</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00481"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a64f1847e1f1b557d55c77c3fe09471f5">  481</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#a64f1847e1f1b557d55c77c3fe09471f5">get_jksups</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00505"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#a4e917c830d32b001ce5ff2d386940115">  505</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#a4e917c830d32b001ce5ff2d386940115">get_jksupv</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00517"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#ad010afd933c4578f9a80909b30b99647">  517</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#ad010afd933c4578f9a80909b30b99647">get_jbsups</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00529"></a><span class="lineno"><a class="line" href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">  529</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">get_jbsupu</a>(<span class="keyword">const</span> <span class="keywordtype">double</span> s, <span class="keyword">const</span> <span class="keywordtype">double</span> u, <span class="keyword">const</span> <span class="keywordtype">double</span> v)<span class="keyword"> const </span>{</div>
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-<div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00573"></a><span class="lineno">  573</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00577"></a><span class="lineno">  577</span>&#160; </div>
-<div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00588"></a><span class="lineno">  588</span>&#160;    }</div>
-<div class="line"><a name="l00589"></a><span class="lineno">  589</span>&#160; </div>
-<div class="line"><a name="l00590"></a><span class="lineno">  590</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00597"></a><span class="lineno">  597</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00600"></a><span class="lineno">  600</span>&#160;    }</div>
-<div class="line"><a name="l00601"></a><span class="lineno">  601</span>&#160; </div>
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-<div class="line"><a name="l00607"></a><span class="lineno">  607</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00609"></a><span class="lineno">  609</span>&#160;        <span class="keywordflow">return</span> <a class="code" href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">p</a>.<a class="code" href="classvmec__grid.html#ac363c2325e60c0efa94e7d24ee38f6ef">get</a>(s);</div>
-<div class="line"><a name="l00610"></a><span class="lineno">  610</span>&#160;    }</div>
-<div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160; </div>
-<div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;<span class="comment">//------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160;<span class="comment"></span><span class="comment">//------------------------------------------------------------------------------</span></div>
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-<div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;    }</div>
-<div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;};</div>
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-<div class="ttc" id="aclasscosine_html"><div class="ttname"><a href="classcosine.html">cosine</a></div><div class="ttdoc">Cosine Parity function interface.</div><div class="ttdef"><b>Definition:</b> parity.hpp:62</div></div>
-<div class="ttc" id="aclassfull__grid_html"><div class="ttname"><a href="classfull__grid.html">full_grid</a></div><div class="ttdoc">A full grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:49</div></div>
-<div class="ttc" id="aclassfull__grid_html_a4123df1c309c0e0e9d9e2c3fbf6c1e29"><div class="ttname"><a href="classfull__grid.html#a4123df1c309c0e0e9d9e2c3fbf6c1e29">full_grid::get_prime</a></div><div class="ttdeci">half_grid get_prime() const</div><div class="ttdoc">Get a radial derivative at a s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.cpp:59</div></div>
-<div class="ttc" id="aclasshalf__grid_html"><div class="ttname"><a href="classhalf__grid.html">half_grid</a></div><div class="ttdoc">A half grid quantity.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:80</div></div>
-<div class="ttc" id="aclasssine_html"><div class="ttname"><a href="classsine.html">sine</a></div><div class="ttdoc">Sine Parity function interface.</div><div class="ttdef"><b>Definition:</b> parity.hpp:36</div></div>
-<div class="ttc" id="aclassvmec__fourier_html"><div class="ttname"><a href="classvmec__fourier.html">vmec_fourier&lt; full_grid, cosine &gt;</a></div></div>
-<div class="ttc" id="aclassvmec__fourier_html_a7f98c537b11229df22c920048368a410"><div class="ttname"><a href="classvmec__fourier.html#a7f98c537b11229df22c920048368a410">vmec_fourier::get_du</a></div><div class="ttdeci">double get_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get a poloidal derivative at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:241</div></div>
-<div class="ttc" id="aclassvmec__fourier_html_acaabf67495d1718f449630bb8a11d70a"><div class="ttname"><a href="classvmec__fourier.html#acaabf67495d1718f449630bb8a11d70a">vmec_fourier::get</a></div><div class="ttdeci">double get(const double s, const double u, const double v) const</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:219</div></div>
-<div class="ttc" id="aclassvmec__fourier_html_ae7feb17607da3a1d82700d546d0d4144"><div class="ttname"><a href="classvmec__fourier.html#ae7feb17607da3a1d82700d546d0d4144">vmec_fourier::get_dv</a></div><div class="ttdeci">double get_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get a toroidal derivative at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:263</div></div>
-<div class="ttc" id="aclassvmec__grid_html"><div class="ttname"><a href="classvmec__grid.html">vmec_grid&lt; full_grid &gt;</a></div></div>
-<div class="ttc" id="aclassvmec__grid_html_a19befcdc8986f9b31895463b945fbdd1"><div class="ttname"><a href="classvmec__grid.html#a19befcdc8986f9b31895463b945fbdd1">vmec_grid::grid</a></div><div class="ttdeci">const GRID_CLASS grid</div><div class="ttdoc">Radial grid buffer.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:115</div></div>
-<div class="ttc" id="aclassvmec__grid_html_ac363c2325e60c0efa94e7d24ee38f6ef"><div class="ttname"><a href="classvmec__grid.html#ac363c2325e60c0efa94e7d24ee38f6ef">vmec_grid::get</a></div><div class="ttdeci">double get(const double s) const</div><div class="ttdoc">Get a value at a radial s position.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:137</div></div>
-<div class="ttc" id="aclassvmec__quantities_html"><div class="ttname"><a href="classvmec__quantities.html">vmec_quantities</a></div><div class="ttdoc">Vmec quantities.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:20</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a0527c7c8184f5f795a7d60e1b6c89581"><div class="ttname"><a href="classvmec__quantities.html#a0527c7c8184f5f795a7d60e1b6c89581">vmec_quantities::get_bsubs</a></div><div class="ttdeci">double get_bsubs(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubs quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:445</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a10f9e060f315f2ca59b8b32cc9927efe"><div class="ttname"><a href="classvmec__quantities.html#a10f9e060f315f2ca59b8b32cc9927efe">vmec_quantities::get_r</a></div><div class="ttdeci">double get_r(const double s, const double u, const double v) const</div><div class="ttdoc">Get R quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:293</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a15ccf364ed023200a9f343ed020393d3"><div class="ttname"><a href="classvmec__quantities.html#a15ccf364ed023200a9f343ed020393d3">vmec_quantities::jksupv</a></div><div class="ttdeci">const vmec_fourier&lt; full_grid, cosine &gt; jksupv</div><div class="ttdoc">JK^v.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:53</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a1a8c20ca1c1a4f18de05712f2999e53b"><div class="ttname"><a href="classvmec__quantities.html#a1a8c20ca1c1a4f18de05712f2999e53b">vmec_quantities::get_test</a></div><div class="ttdeci">double get_test(const double s) const</div><div class="ttdoc">Get test quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:618</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a258c851db21a427a2cac6e0751425360"><div class="ttname"><a href="classvmec__quantities.html#a258c851db21a427a2cac6e0751425360">vmec_quantities::phipf</a></div><div class="ttdeci">const vmec_grid&lt; full_grid &gt; phipf</div><div class="ttdoc">Radial derivative of toroidal flux.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:33</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a322633c12b608afd8077cf2c07fa1556"><div class="ttname"><a href="classvmec__quantities.html#a322633c12b608afd8077cf2c07fa1556">vmec_quantities::get_bsubu</a></div><div class="ttdeci">double get_bsubu(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:457</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a3417fe660d4a5d333ae427b1a03b8b79"><div class="ttname"><a href="classvmec__quantities.html#a3417fe660d4a5d333ae427b1a03b8b79">vmec_quantities::load_fourier_nyq</a></div><div class="ttdeci">static vmec_fourier&lt; GIRD_CLASS, PARITY &gt; load_fourier_nyq(const std::string &amp;wout_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a nyquest fourier vmec quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:210</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a3adf0cde2f5efc9df84f8460ed945c4d"><div class="ttname"><a href="classvmec__quantities.html#a3adf0cde2f5efc9df84f8460ed945c4d">vmec_quantities::r</a></div><div class="ttdeci">const vmec_fourier&lt; full_grid, cosine &gt; r</div><div class="ttdoc">r</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:25</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a49f4c225ed57b741b2770272d4b03593"><div class="ttname"><a href="classvmec__quantities.html#a49f4c225ed57b741b2770272d4b03593">vmec_quantities::bsubs</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, sine &gt; bsubs</div><div class="ttdoc">B_s.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:45</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a563578864bee7322a4bd3fbc5fa911f7"><div class="ttname"><a href="classvmec__quantities.html#a563578864bee7322a4bd3fbc5fa911f7">vmec_quantities::drds</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; drds</div><div class="ttdoc">drds</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:27</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a5d726b0baf90edd2a018510271cbe553"><div class="ttname"><a href="classvmec__quantities.html#a5d726b0baf90edd2a018510271cbe553">vmec_quantities::p</a></div><div class="ttdeci">const vmec_grid&lt; full_grid &gt; p</div><div class="ttdoc">Pressure.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:57</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a664e01e407530dec2bb8946fdb386b85"><div class="ttname"><a href="classvmec__quantities.html#a664e01e407530dec2bb8946fdb386b85">vmec_quantities::load_scalar</a></div><div class="ttdeci">static double load_scalar(const std::string &amp;wout_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a scalar vmec quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:111</div></div>
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-<div class="ttc" id="aclassvmec__quantities_html_a69eb03a866d2b0638bbcc2c4bd12fbca"><div class="ttname"><a href="classvmec__quantities.html#a69eb03a866d2b0638bbcc2c4bd12fbca">vmec_quantities::get_dbsupv_dv</a></div><div class="ttdeci">double get_dbsupv_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get dbsupvdv quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:586</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a6c17f6674fa261ce4cd918ccdebb7e98"><div class="ttname"><a href="classvmec__quantities.html#a6c17f6674fa261ce4cd918ccdebb7e98">vmec_quantities::bsupu</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; bsupu</div><div class="ttdoc">B^u.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:41</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a803e2f4f2a6c22379a109da6533880ef"><div class="ttname"><a href="classvmec__quantities.html#a803e2f4f2a6c22379a109da6533880ef">vmec_quantities::to_prime</a></div><div class="ttdeci">static vmec_fourier&lt; half_grid, PARITY &gt; to_prime(const vmec_fourier&lt; full_grid, PARITY &gt; vmec)</div><div class="ttdoc">Convert full grid quantity to half grid primed.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:258</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a80af6a67a62681628a4d5ddc65fb4331"><div class="ttname"><a href="classvmec__quantities.html#a80af6a67a62681628a4d5ddc65fb4331">vmec_quantities::get_z</a></div><div class="ttdeci">double get_z(const double s, const double u, const double v) const</div><div class="ttdoc">Get Z quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:341</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a89b3004d402a3a4f20acb0622d4a7442"><div class="ttname"><a href="classvmec__quantities.html#a89b3004d402a3a4f20acb0622d4a7442">vmec_quantities::get_dz_dv</a></div><div class="ttdeci">double get_dz_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get dZdv quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:377</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a98145f0e64f3531faf832471c66bd216"><div class="ttname"><a href="classvmec__quantities.html#a98145f0e64f3531faf832471c66bd216">vmec_quantities::get_jksupu</a></div><div class="ttdeci">double get_jksupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get jksupu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:493</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a982f1eaab5d29a088b4f65a802e62d68"><div class="ttname"><a href="classvmec__quantities.html#a982f1eaab5d29a088b4f65a802e62d68">vmec_quantities::z</a></div><div class="ttdeci">const vmec_fourier&lt; full_grid, sine &gt; z</div><div class="ttdoc">z</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:29</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_a98d4a605d60d6be1fa3dca89a50a90ea"><div class="ttname"><a href="classvmec__quantities.html#a98d4a605d60d6be1fa3dca89a50a90ea">vmec_quantities::get_bsupu</a></div><div class="ttdeci">double get_bsupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsupu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:421</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_aa8ea553ea5b1e0dc2f858e14fc863761"><div class="ttname"><a href="classvmec__quantities.html#aa8ea553ea5b1e0dc2f858e14fc863761">vmec_quantities::get_curtor</a></div><div class="ttdeci">double get_curtor() const</div><div class="ttdoc">Get total toroidal current.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:562</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_aba5ddaec243db7c52803c6d9a4e83d8a"><div class="ttname"><a href="classvmec__quantities.html#aba5ddaec243db7c52803c6d9a4e83d8a">vmec_quantities::get_dz_du</a></div><div class="ttdeci">double get_dz_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get dZdu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:365</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_abbbd7b0cacfb1805db776642147b5420"><div class="ttname"><a href="classvmec__quantities.html#abbbd7b0cacfb1805db776642147b5420">vmec_quantities::make_full</a></div><div class="ttdeci">static vmec_grid&lt; full_grid &gt; make_full()</div><div class="ttdoc">Factory method to make a test quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:91</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_abeedad8f2dc5e5a132d559b322d51834"><div class="ttname"><a href="classvmec__quantities.html#abeedad8f2dc5e5a132d559b322d51834">vmec_quantities::test_full</a></div><div class="ttdeci">const vmec_grid&lt; full_grid &gt; test_full</div><div class="ttdoc">test function</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:23</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac15f8fa63b8a395636a55a86ad8491e4"><div class="ttname"><a href="classvmec__quantities.html#ac15f8fa63b8a395636a55a86ad8491e4">vmec_quantities::signj</a></div><div class="ttdeci">const double signj</div><div class="ttdoc">Sign of vmec jacobian.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:37</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac395b16cc877af1062e6b13341f0b5b9"><div class="ttname"><a href="classvmec__quantities.html#ac395b16cc877af1062e6b13341f0b5b9">vmec_quantities::to_prime</a></div><div class="ttdeci">static vmec_fourier&lt; full_grid, PARITY &gt; to_prime(const vmec_fourier&lt; half_grid, PARITY &gt; vmec)</div><div class="ttdoc">Convert full grid quantity to half grid primed.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:275</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac42bef72c7ad04961cccef1e48938197"><div class="ttname"><a href="classvmec__quantities.html#ac42bef72c7ad04961cccef1e48938197">vmec_quantities::load</a></div><div class="ttdeci">static vmec_grid&lt; GIRD_CLASS &gt; load(const std::string &amp;wout_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a vmec quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:134</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac582255b86b9765dede666b4ba5e082f"><div class="ttname"><a href="classvmec__quantities.html#ac582255b86b9765dede666b4ba5e082f">vmec_quantities::get_bsups</a></div><div class="ttdeci">double get_bsups(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsups quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:409</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac913ccd09bd4c50e727ce2acbf80e772"><div class="ttname"><a href="classvmec__quantities.html#ac913ccd09bd4c50e727ce2acbf80e772">vmec_quantities::get_phipf</a></div><div class="ttdeci">double get_phipf(const double s) const</div><div class="ttdoc">Get phipf quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:387</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ac9a49ce630f3e339bd8721288be2c205"><div class="ttname"><a href="classvmec__quantities.html#ac9a49ce630f3e339bd8721288be2c205">vmec_quantities::chipf</a></div><div class="ttdeci">const vmec_grid&lt; full_grid &gt; chipf</div><div class="ttdoc">Radial derivative of poloidal flux.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:35</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_aca432c3dbe4bee4c4a1726869d0843d7"><div class="ttname"><a href="classvmec__quantities.html#aca432c3dbe4bee4c4a1726869d0843d7">vmec_quantities::j</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; j</div><div class="ttdoc">Jacobian.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:39</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_acca0dd47dc704bdec388f2d085e2e385"><div class="ttname"><a href="classvmec__quantities.html#acca0dd47dc704bdec388f2d085e2e385">vmec_quantities::get_jbsupv</a></div><div class="ttdeci">double get_jbsupv(const double s, const double u, const double v) const</div><div class="ttdoc">Get jbsupv quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:541</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_acd9866149633d9d9abc3c38cd5d74978"><div class="ttname"><a href="classvmec__quantities.html#acd9866149633d9d9abc3c38cd5d74978">vmec_quantities::get_r_prime</a></div><div class="ttdeci">double get_r_prime(const double s, const double u, const double v) const</div><div class="ttdoc">Get R' quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:305</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_acf89a13cff0cf81f5caa2ca1fc7ae204"><div class="ttname"><a href="classvmec__quantities.html#acf89a13cff0cf81f5caa2ca1fc7ae204">vmec_quantities::get_dbsupu_du</a></div><div class="ttdeci">double get_dbsupu_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get dbsupudu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:574</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ad010afd933c4578f9a80909b30b99647"><div class="ttname"><a href="classvmec__quantities.html#ad010afd933c4578f9a80909b30b99647">vmec_quantities::get_jbsups</a></div><div class="ttdeci">double get_jbsups(const double s, const double u, const double v) const</div><div class="ttdoc">Get jbsups quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:517</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ada4b927aae69906159a1591d4d879bb4"><div class="ttname"><a href="classvmec__quantities.html#ada4b927aae69906159a1591d4d879bb4">vmec_quantities::get_dr_du</a></div><div class="ttdeci">double get_dr_du(const double s, const double u, const double v) const</div><div class="ttdoc">Get dRdu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:317</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_adbd10a1287f2750bd901df3cb5713c0f"><div class="ttname"><a href="classvmec__quantities.html#adbd10a1287f2750bd901df3cb5713c0f">vmec_quantities::dzds</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, sine &gt; dzds</div><div class="ttdoc">dzds</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:31</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_adc2134265bb00bcb0c6d3c160e2cd7e6"><div class="ttname"><a href="classvmec__quantities.html#adc2134265bb00bcb0c6d3c160e2cd7e6">vmec_quantities::get_jbsupu</a></div><div class="ttdeci">double get_jbsupu(const double s, const double u, const double v) const</div><div class="ttdoc">Get jbsupu quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:529</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_adf52d55076b1c90fabb49c79d0bc2140"><div class="ttname"><a href="classvmec__quantities.html#adf52d55076b1c90fabb49c79d0bc2140">vmec_quantities::get_dr_dv</a></div><div class="ttdeci">double get_dr_dv(const double s, const double u, const double v) const</div><div class="ttdoc">Get dRdv quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:329</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_adfc29f73331852c2a1260723c035ca56"><div class="ttname"><a href="classvmec__quantities.html#adfc29f73331852c2a1260723c035ca56">vmec_quantities::get_jacobian</a></div><div class="ttdeci">double get_jacobian(const double s, const double u, const double v) const</div><div class="ttdoc">Get jacobian.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:553</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_ae6052d6b3274f89b93454376568747c3"><div class="ttname"><a href="classvmec__quantities.html#ae6052d6b3274f89b93454376568747c3">vmec_quantities::get_pressure</a></div><div class="ttdeci">double get_pressure(const double s) const</div><div class="ttdoc">Get pressure quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:608</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_aebe1228702d63cc0205e7c49748a7da2"><div class="ttname"><a href="classvmec__quantities.html#aebe1228702d63cc0205e7c49748a7da2">vmec_quantities::curtor</a></div><div class="ttdeci">const double curtor</div><div class="ttdoc">Total toroidal current.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:55</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_aec9adf33bbdc742091fd7f80424d3fd3"><div class="ttname"><a href="classvmec__quantities.html#aec9adf33bbdc742091fd7f80424d3fd3">vmec_quantities::bsubv</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; bsubv</div><div class="ttdoc">B_v.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:49</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_af3dae2a73ec7e39d59486dfb614982ee"><div class="ttname"><a href="classvmec__quantities.html#af3dae2a73ec7e39d59486dfb614982ee">vmec_quantities::get_bsubv</a></div><div class="ttdeci">double get_bsubv(const double s, const double u, const double v) const</div><div class="ttdoc">Get bsubv quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:469</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_af7951caf03c35726e9fa89070d191816"><div class="ttname"><a href="classvmec__quantities.html#af7951caf03c35726e9fa89070d191816">vmec_quantities::bsupv</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; bsupv</div><div class="ttdoc">B^v.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:43</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_af8793d14fa2f69371eae4d28be30bc95"><div class="ttname"><a href="classvmec__quantities.html#af8793d14fa2f69371eae4d28be30bc95">vmec_quantities::load_fourier</a></div><div class="ttdeci">static vmec_fourier&lt; GIRD_CLASS, PARITY &gt; load_fourier(const std::string &amp;wout_file, const std::string &amp;name)</div><div class="ttdoc">Factory method to load a fourier vmec quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:161</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_af9dc78eca368368eb5b4971669e2eb2a"><div class="ttname"><a href="classvmec__quantities.html#af9dc78eca368368eb5b4971669e2eb2a">vmec_quantities::bsubu</a></div><div class="ttdeci">const vmec_fourier&lt; half_grid, cosine &gt; bsubu</div><div class="ttdoc">B_u.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:47</div></div>
-<div class="ttc" id="aclassvmec__quantities_html_afc5686dd846f6ac420931e03c13a0f8d"><div class="ttname"><a href="classvmec__quantities.html#afc5686dd846f6ac420931e03c13a0f8d">vmec_quantities::get_z_prime</a></div><div class="ttdeci">double get_z_prime(const double s, const double u, const double v) const</div><div class="ttdoc">Get Z' quantity.</div><div class="ttdef"><b>Definition:</b> vmec_quantities.hpp:353</div></div>
-<div class="ttc" id="agrid__quantity_8hpp_html"><div class="ttname"><a href="grid__quantity_8hpp.html">grid_quantity.hpp</a></div><div class="ttdoc">Contains classes to interpolate full and half grid quanities.</div></div>
-<div class="ttc" id="agrid__quantity_8hpp_html_a1d46cf832974f65f1c17d70d5794352d"><div class="ttname"><a href="grid__quantity_8hpp.html#a1d46cf832974f65f1c17d70d5794352d">vmec_quantity</a></div><div class="ttdeci">std::vector&lt; vmec_grid&lt; GRID_CLASS &gt; &gt; vmec_quantity</div><div class="ttdoc">Type for vmec fourier quantities.</div><div class="ttdef"><b>Definition:</b> grid_quantity.hpp:183</div></div>
-<div class="ttc" id="anamespacesiesta__namelist_html_a21c9db52d45e79833d731b4be4bb346d"><div class="ttname"><a href="namespacesiesta__namelist.html#a21c9db52d45e79833d731b4be4bb346d">siesta_namelist::wout_file</a></div><div class="ttdeci">character(len=siesta_namelist_name_length) wout_file</div><div class="ttdoc">Filename of the VMEC woutfile.</div><div class="ttdef"><b>Definition:</b> siesta_namelist.f90:206</div></div>
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-<a href="vmec__test__commandline__parser_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">//******************************************************************************</span></div>
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-<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#ifndef vmec_test_commandline_parser_hpp</span></div>
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-<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;}</div>
-<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160; </div>
-<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_a0b3a34923bb1e7aa6edbb2d6d7dc4a20"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#a0b3a34923bb1e7aa6edbb2d6d7dc4a20">vmec_test::commandline_parser::commandline_parser</a></div><div class="ttdeci">commandline_parser(const size_t argc, const char *argv[], const std::function&lt; void(void)&gt; help)</div><div class="ttdoc">Construct a commandline_parser object by pasring command line arguments.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:77</div></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_a32d8cbf6451b470f3f698e80b24b9a88"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#a32d8cbf6451b470f3f698e80b24b9a88">vmec_test::commandline_parser::get</a></div><div class="ttdeci">TYPE get(const std::string &amp;key) const</div><div class="ttdoc">Get the value of the agument.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:99</div></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_a3d4828d00e169ca11b02d61c25649d80"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#a3d4828d00e169ca11b02d61c25649d80">vmec_test::commandline_parser::parse_commands</a></div><div class="ttdeci">static arg_map parse_commands(const size_t argc, const char *argv[], const std::function&lt; void(void)&gt; help)</div><div class="ttdoc">Factory method to parse the commandline and produce the arguments.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:39</div></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_a4f9b7a587ba6bebab46c6a44d5ab870b"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#a4f9b7a587ba6bebab46c6a44d5ab870b">vmec_test::commandline_parser::help</a></div><div class="ttdeci">const std::function&lt; void(void)&gt; help</div><div class="ttdoc">Help callback function.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:29</div></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_a856bd2299eb0ca9839e53a1bd48a7506"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#a856bd2299eb0ca9839e53a1bd48a7506">vmec_test::commandline_parser::is_set</a></div><div class="ttdeci">bool is_set(const std::string &amp;key) const</div><div class="ttdoc">Check if command arg was set.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:88</div></div>
-<div class="ttc" id="aclassvmec__test_1_1commandline__parser_html_aa35810b37694461aa2e102b9a26c8477"><div class="ttname"><a href="classvmec__test_1_1commandline__parser.html#aa35810b37694461aa2e102b9a26c8477">vmec_test::commandline_parser::commands</a></div><div class="ttdeci">const arg_map commands</div><div class="ttdoc">Parsed commands.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:27</div></div>
-<div class="ttc" id="acommandline__parser_8hpp_html_aaa5f58a702213e54fd726c598f89839f"><div class="ttname"><a href="commandline__parser_8hpp.html#aaa5f58a702213e54fd726c598f89839f">arg_element</a></div><div class="ttdeci">std::pair&lt; std::string, std::string &gt; arg_element</div><div class="ttdoc">Type for a key value pair.</div><div class="ttdef"><b>Definition:</b> commandline_parser.hpp:84</div></div>
-<div class="ttc" id="acommandline__parser_8hpp_html_af634bb94a40e162f700c5bc2613c3955"><div class="ttname"><a href="commandline__parser_8hpp.html#af634bb94a40e162f700c5bc2613c3955">arg_map</a></div><div class="ttdeci">std::map&lt; std::string, std::string &gt; arg_map</div><div class="ttdoc">Type for the argument map.</div><div class="ttdef"><b>Definition:</b> commandline_parser.hpp:82</div></div>
-<div class="ttc" id="anamespacecommandline__parser_html"><div class="ttname"><a href="namespacecommandline__parser.html">commandline_parser</a></div><div class="ttdoc">Defines the base class of the type commandline_parser_class.</div><div class="ttdef"><b>Definition:</b> commandline_parser.f:65</div></div>
-<div class="ttc" id="avmec__test__commandline__parser_8hpp_html_adc4b196a345bb88edd91e88c0b2d52f6"><div class="ttname"><a href="vmec__test__commandline__parser_8hpp.html#adc4b196a345bb88edd91e88c0b2d52f6">vmec_test::arg_map</a></div><div class="ttdeci">std::map&lt; std::string, std::string &gt; arg_map</div><div class="ttdoc">Type for the argument map.</div><div class="ttdef"><b>Definition:</b> vmec_test_commandline_parser.hpp:17</div></div>
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-<div class="title">VMEC Equilibrium Manual </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#vmec_equilibrium_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#vmec_equilibrium_recon_param_sec">VMEC Reconstruction Parameters</a><ul><li class="level2"><a href="#vmec_equilibrium_vmec_recon_param_sec">VMEC Equilibrium Reconstruction Parameters</a></li>
-<li class="level2"><a href="#vmec_equilibrium_aux_recon_param_sec">VMEC Auxiliary Reconstruction Parameters</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#vmec_equilibrium_derive_param_sec">VMEC Derived Parameters</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="vmec_equilibrium_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the V3FIT interface to the VMEC equilibrium solver. This lists all the parameters associated with a VMEC equilibrium. These parameters are divided input two types, reconstruction parameters and derived parameters. All parameters are documented in a table of the following form. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<h1><a class="anchor" id="vmec_equilibrium_recon_param_sec"></a>
-VMEC Reconstruction Parameters</h1>
-<p>Reconstruction parameters are divided into two types, VMEC reconstruction parameters and auxillary parameters. </p>
-<h2><a class="anchor" id="vmec_equilibrium_vmec_recon_param_sec"></a>
-VMEC Equilibrium Reconstruction Parameters</h2>
-<p>VMEC Equilibrium reconstruction parameters are parameters that maybe reconstructed that change the equilibirum. These parameters require the equilibrium to reconverge. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>ac</code></td><td width="50%">1D Array of function current profile parameters.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a498f47d198fd1d6d8b4610b5baee1c8e" title="Parameterized current profile coefficents.">vmec_input::ac</a> </td></tr>
-<tr>
-<td width="20%"><code>ac_aux_s</code></td><td width="50%">1D Array of segment current profile s poitions.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a9ec244c7cffbffd75b564a47d9d17c7e" title="Radial knot position for the current profile splines.">vmec_input::ac_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>ac_aux_f</code></td><td width="50%">1D Array of segment current profile f values.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a93ef97daaf0d372f7c9899f3d99f46a6" title="Knot amplitudes for the current profile splines.">vmec_input::ac_aux_f</a> </td></tr>
-<tr>
-<td width="20%"><code>ai</code></td><td width="50%">1D Array of function current profile parameters.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a8ca31021342fd5b6d19989df9f02f366" title="Parameterized rotational transform profile coefficents.">vmec_input::ai</a> </td></tr>
-<tr>
-<td width="20%"><code>ai_aux_s</code></td><td width="50%">1D Array of segment iotabar profile s poitions.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#aef5c29e2efc2d5828c8fe3de85f3a1f5" title="Radial knot position for the rotational transform profile splines.">vmec_input::ai_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>ai_aux_f</code></td><td width="50%">1D Array of segment iotabar profile f values.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#ac7a5617238a9e2c12ca19c75a8104f7e" title="Knot amplitudes for the rotational transform profile splines.">vmec_input::ai_aux_f</a> </td></tr>
-<tr>
-<td width="20%"><code>am</code></td><td width="50%">1D Array of function current profile parameters.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#acb5e220b0a338430acb1580970ac8d76" title="Parameterized rotational pressure coefficents.">vmec_input::am</a> </td></tr>
-<tr>
-<td width="20%"><code>am_aux_s</code></td><td width="50%">1D Array of segment pressure profile s poitions.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#aa825df890f34a297b2230415df82329c" title="Radial knot position for the pressure profile splines.">vmec_input::am_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>am_aux_f</code></td><td width="50%">1D Array of segment pressure profile f values.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a47df99949e45cb18a0eaf49394abf6c3" title="Knot amplitudes for the pressure profile splines.">vmec_input::am_aux_f</a> </td></tr>
-<tr>
-<td width="20%"><code>bloat</code></td><td width="50%">Extends the field into the vacuum region.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a9e3e442cef77968189c13ca810c9b5c9" title="Expansion factor for the current profile.">vmec_input::bloat</a> </td></tr>
-<tr>
-<td width="20%"><code>rbc</code></td><td width="50%">2D Array of outer boundary R cosine coeffiecents.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a5b4305408517750c181d1d18d473527d" title="R boundary coefficients stellarator symmetric.">vmec_input::rbc</a> </td></tr>
-<tr>
-<td width="20%"><code>zbs</code></td><td width="50%">2D Array of outer boundary Z sine coeffiecents.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a4f1e1166bf83ba43d3d5f403a3b5fcb8" title="Z boundary coefficients stellarator symmetric.">vmec_input::zbs</a> </td></tr>
-<tr>
-<td width="20%"><code>rbs</code></td><td width="50%">2D Array of outer boundary R sine coeffiecents.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#acb9d53b6d51f57e1a388d7eab9507370" title="R boundary coefficients stellarator asymmetric.">vmec_input::rbs</a> </td></tr>
-<tr>
-<td width="20%"><code>zbc</code></td><td width="50%">2D Array of outer boundary Z cosine coeffiecents.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#aae4295c1cd8498c31176ae89ca61c0aa" title="Z boundary coefficients stellarator asymmetric.">vmec_input::zbc</a> </td></tr>
-<tr>
-<td width="20%"><code>extcur</code></td><td width="50%">1D Array of external currents.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a5e0be1292a877581ba37d1de76d70f92" title="Array of external field coil currents.">vmec_input::extcur</a> </td></tr>
-<tr>
-<td width="20%"><code>curtor</code></td><td width="50%">Toroidal current.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a16e97b659b8f357262c03090ca8ae960" title="Total toroidal current.">vmec_input::curtor</a> </td></tr>
-<tr>
-<td width="20%"><code>phiedge</code></td><td width="50%">The edge magnetic flux.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#ac2465c122151817d32d0adafc99e2d23" title="Total toroidal flux.">vmec_input::phiedge</a> </td></tr>
-<tr>
-<td width="20%"><code>pres_scale</code></td><td width="50%">The scaling parameter for the pressure.</td><td width="30%">@ref <a class="el" href="namespacevmec__input.html#a462d153c6c2edf67fb5004ea31367a5c" title="Scaling factor for the pressure profile.">vmec_input::pres_scale</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_equilibrium_aux_recon_param_sec"></a>
-VMEC Auxiliary Reconstruction Parameters</h2>
-<p>VMEC Auxiliary reconstruction parameters are parameters that maybe reconstructed that do not change the equilibirum. These parameters do not require the equilibrium to reconverge. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>pp_ne_b</code></td><td width="50%">1D Array of function density profile parameters.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_as</code></td><td width="50%">1D Array of segment density profile s poitions.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_ne_af</code></td><td width="50%">1D Array of segment density profile f values.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b</code></td><td width="50%">1D Array of function sxrem profile parameters. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_as</code></td><td width="50%">1D Array of segment sxrem profile s poitions. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_af</code></td><td width="50%">1D Array of segment sxrem profile f values. DEPREICATED only use id when using the old profile specification.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_b_a</code></td><td width="50%">2D Array of function sxrem profile parameters. First index is the profile number.</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34" title="pprofile_T describing a flux surface conatsnt soft x-ray emissivity profile.">vmec_equilibrium::vmec_class::sxrem</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_as_a</code></td><td width="50%">2D Array of segment sxrem profile s poitions. First index is the profile number.</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34" title="pprofile_T describing a flux surface conatsnt soft x-ray emissivity profile.">vmec_equilibrium::vmec_class::sxrem</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_sxrem_af_a</code></td><td width="50%">2D Array of segment sxrem profile f values. First index is the profile number.</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#acd7269daba9cffc01dde250c00b24b34" title="pprofile_T describing a flux surface conatsnt soft x-ray emissivity profile.">vmec_equilibrium::vmec_class::sxrem</a> </td></tr>
-<tr>
-<td width="20%"><code>pp_te_b</code></td><td width="50%">1D Array of function electron temperature profile parameters.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_te_as</code></td><td width="50%">1D Array of segment electron temperature profile s poitions.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_te_af</code></td><td width="50%">1D Array of segment electron temperature profile f values.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_b</code></td><td width="50%">1D Array of function ion temperature profile parameters.</td><td width="30%">@ref pprofile_T::pprofile_class::b </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_as</code></td><td width="50%">1D Array of segment ion temperature profile s poitions.</td><td width="30%">@ref pprofile_T::pprofile_class::as </td></tr>
-<tr>
-<td width="20%"><code>pp_ti_af</code></td><td width="50%">1D Array of segment ion temperature profile f values.</td><td width="30%">@ref pprofile_T::pprofile_class::af </td></tr>
-<tr>
-<td width="20%"><code>phi_offset</code></td><td width="50%">Phi angle offset in radians</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a713a315e222accda5ce7ede256a2f557" title="Plasma phi offset.">vmec_equilibrium::vmec_class::phi_offset</a> </td></tr>
-<tr>
-<td width="20%"><code>z_offset</code></td><td width="50%">Z offset in meters</td><td width="30%">@ref <a class="el" href="structvmec__equilibrium_1_1vmec__class.html#a5d271bc12f77cee3d936c67e06679bc0" title="Plasma z offset.">vmec_equilibrium::vmec_class::z_offset</a> </td></tr>
-</table>
-<h1><a class="anchor" id="vmec_equilibrium_derive_param_sec"></a>
-VMEC Derived Parameters</h1>
-<p>Derived parameters are parameters that come from the equilibrium but are not reconstructable. </p><table border="1px" width="80%">
-<tr>
-<td width="20%"><code>rmnc</code></td><td width="50%">2D Array of surface R cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::rmnc </td></tr>
-<tr>
-<td width="20%"><code>zmns</code></td><td width="50%">2D Array of surface Z sine coeffiecents.</td><td width="30%">@ref read_wout_mod::zmns </td></tr>
-<tr>
-<td width="20%"><code>lmns</code></td><td width="50%">2D Array of surface lambda sine coeffiecents.</td><td width="30%">@ref read_wout_mod::lmns </td></tr>
-<tr>
-<td width="20%"><code>gmnc</code></td><td width="50%">2D Array of surface g cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::gmnc </td></tr>
-<tr>
-<td width="20%"><code>bsubsmns</code></td><td width="50%">2D Array of surface B_s sine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubsmns </td></tr>
-<tr>
-<td width="20%"><code>bsubumnc</code></td><td width="50%">2D Array of surface B_u cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubumnc </td></tr>
-<tr>
-<td width="20%"><code>bsubvmnc</code></td><td width="50%">2D Array of surface B_v cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubvmnc </td></tr>
-<tr>
-<td width="20%"><code>bsupumnc</code></td><td width="50%">2D Array of surface B^u cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsupumnc </td></tr>
-<tr>
-<td width="20%"><code>bsupvmnc</code></td><td width="50%">2D Array of surface B^v cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsupvmnc </td></tr>
-<tr>
-<td width="20%"><code>rmns</code></td><td width="50%">2D Array of surface R sine coeffiecents.</td><td width="30%">@ref read_wout_mod::rmns </td></tr>
-<tr>
-<td width="20%"><code>zmnc</code></td><td width="50%">2D Array of surface Z cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::zmnc </td></tr>
-<tr>
-<td width="20%"><code>lmnc</code></td><td width="50%">2D Array of surface lambda cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::lmnc </td></tr>
-<tr>
-<td width="20%"><code>gmns</code></td><td width="50%">2D Array of surface g sine coeffiecents.</td><td width="30%">@ref read_wout_mod::gmns </td></tr>
-<tr>
-<td width="20%"><code>bsubsmnc</code></td><td width="50%">2D Array of surface B_s cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubsmnc </td></tr>
-<tr>
-<td width="20%"><code>bsubumns</code></td><td width="50%">2D Array of surface B_u sine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubumns </td></tr>
-<tr>
-<td width="20%"><code>bsubvmns</code></td><td width="50%">2D Array of surface B_v sine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsubvmns </td></tr>
-<tr>
-<td width="20%"><code>bsupumns</code></td><td width="50%">2D Array of surface B^u sine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsupumns </td></tr>
-<tr>
-<td width="20%"><code>bsupvmns</code></td><td width="50%">2D Array of surface B^v sine coeffiecents.</td><td width="30%">@ref read_wout_mod::bsupvmns </td></tr>
-<tr>
-<td width="20%"><code>phi</code></td><td width="50%">1D Array of Toroidal flux.</td><td width="30%">@ref read_wout_mod::phi </td></tr>
-<tr>
-<td width="20%"><code>iotaf</code></td><td width="50%">1D Array of full grid iotabar.</td><td width="30%">@ref read_wout_mod::iotaf </td></tr>
-<tr>
-<td width="20%"><code>iotas</code></td><td width="50%">1D Array of half grid iotabar.</td><td width="30%">@ref read_wout_mod::iotas </td></tr>
-<tr>
-<td width="20%"><code>vvc_smaleli</code></td><td width="50%">Internal inducance. Computed in eqfor.</td><td width="30%">@ref v3f_vmec_comm::vvc_smaleli </td></tr>
-<tr>
-<td width="20%"><code>vvc_kappa_p</code></td><td width="50%">Mean elongation. Computed in eqfor.</td><td width="30%">@ref v3f_vmec_comm::vvc_kappa_p </td></tr>
-<tr>
-<td width="20%"><code>betatot</code></td><td width="50%">Total beta.</td><td width="30%">@ref read_wout_mod::betatot </td></tr>
-<tr>
-<td width="20%"><code>betapol</code></td><td width="50%">Poloidal beta.</td><td width="30%">@ref read_wout_mod::betapol </td></tr>
-<tr>
-<td width="20%"><code>betator</code></td><td width="50%">Toroidal beta.</td><td width="30%">@ref read_wout_mod::betator </td></tr>
-<tr>
-<td width="20%"><code>betaxis</code></td><td width="50%">Beta on axis.</td><td width="30%">@ref read_wout_mod::betaxis </td></tr>
-<tr>
-<td width="20%"><code>jcuru</code></td><td width="50%">Poloidal current density.</td><td width="30%">@ref read_wout_mod::jcuru </td></tr>
-<tr>
-<td width="20%"><code>jcurv</code></td><td width="50%">Toroidal current density.</td><td width="30%">@ref read_wout_mod::jcurv </td></tr>
-<tr>
-<td width="20%"><code>jdotb</code></td><td width="50%">Current density in direction of b field.</td><td width="30%">@ref read_wout_mod::jdotb </td></tr>
-<tr>
-<td width="20%"><code>raxis_cc</code></td><td width="50%">Magnetic axis R cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::raxis </td></tr>
-<tr>
-<td width="20%"><code>raxis_cs</code></td><td width="50%">Magnetic axis R sine coeffiecents.</td><td width="30%">@ref read_wout_mod::raxis </td></tr>
-<tr>
-<td width="20%"><code>zaxis_cc</code></td><td width="50%">Magnetic axis Z cosine coeffiecents.</td><td width="30%">@ref read_wout_mod::zaxis </td></tr>
-<tr>
-<td width="20%"><code>zaxis_cs</code></td><td width="50%">Magnetic axis Z sine coeffiecents.</td><td width="30%">@ref read_wout_mod::zaxis </td></tr>
-<tr>
-<td width="20%"><code>qfact</code></td><td width="50%">Safety factor profile.</td><td width="30%">@ref read_wout_mod::qfact </td></tr>
-<tr>
-<td width="20%"><code>pres</code></td><td width="50%">Half grid pressure. Should only be used when reconstructing a pressure profile parameter.</td><td width="30%">@ref read_wout_mod::pres </td></tr>
-<tr>
-<td width="20%"><code>presf</code></td><td width="50%">Full grid pressure. Should only be used when reconstructing a pressure profile parameter.</td><td width="30%">@ref read_wout_mod::pres </td></tr>
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-<div class="title">Namelist indata definition </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#vmec_namelist_intro_sec">Introduction</a></li>
-<li class="level1"><a href="#vmec_namelist_var_sec">Namelist Variables</a><ul><li class="level2"><a href="#vmec_control_param_sec">Control Parameters.</a><ul><li class="level3"><a href="#vmec_precon_control_param_sec">Precondicioner control parameters.</a></li>
-<li class="level3"><a href="#vmec_giveup_control_param_sec">Early termination control parameters.</a></li>
-<li class="level3"><a href="#vmec_continue_control_param_sec">Continue control parameters.</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#vmec_control_flags_sec">Control flags.</a></li>
-<li class="level2"><a href="#vmec_radial_parameters_sec">Radial parameters.</a></li>
-<li class="level2"><a href="#vmec_fourier_sizes_sec">Fourier sizes.</a></li>
-<li class="level2"><a href="#vmec_realspace_sizes_sec">Real space grid sizes.</a></li>
-<li class="level2"><a href="#vmec_extcur_param_sec">External current parameters.</a></li>
-<li class="level2"><a href="#vmec_profile_param_sec">Profile Parameters.</a><ul><li class="level3"><a href="#vmec_current_profile_param_sec">Current profile parameters.</a></li>
-<li class="level3"><a href="#vmec_iota_profile_param_sec">Rotational transform profile parameters.</a></li>
-<li class="level3"><a href="#vmec_pres_profile_param_sec">Pressure profile parameters.</a></li>
-</ul>
-</li>
-<li class="level2"><a href="#vmec_anisotropy_parameters_sec">Anisotropy parameters.</a></li>
-<li class="level2"><a href="#vmec_edge_parameters_sec">Edge Boundary parameters.</a></li>
-<li class="level2"><a href="#vmec_axis_parameters_sec">Inital magnetic axis guess.</a></li>
-</ul>
-</li>
-<li class="level1"><a href="#vmec_namelist_example_sec">Example File.</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="vmec_namelist_intro_sec"></a>
-Introduction</h1>
-<p>This page documents the contents of a namelist input file. VMEC namelist variables are defined in the <code>indata</code> common block.</p>
-<h1><a class="anchor" id="vmec_namelist_var_sec"></a>
-Namelist Variables</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Input variable</code></td><td width="50%">Description</td><td width="30%">Code Reference</td></tr>
-</table>
-<h2><a class="anchor" id="vmec_control_param_sec"></a>
-Control Parameters.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>omp_num_threads</code></td><td width="50%">Number of openmp threads to use. <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacevmec__input.html#aff9b69c8776d7acba20f3ef7a7471e20">vmec_input::omp_num_threads</a> </td></tr>
-<tr>
-<td width="20%"><code>gamma</code></td><td width="50%">Adiabatic factor for the pressure perturbation.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a9dfcdd1da56d1db5a9b609a8b7a0144f">vmec_input::gamma</a> </td></tr>
-<tr>
-<td width="20%"><code>niter</code></td><td width="50%">Maximum number of iterations to run. <b>DEPRECATED</b> <b>Use</b> <a class="el" href="namespacevmec__input.html#aac08a03ceff82b6d20dc944df04f77e7">vmec_input::niter_array</a> instead.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a7f1091f4e7b72eab0b5515040ffa1517">vmec_input::niter</a> </td></tr>
-<tr>
-<td width="20%"><code>niter_array</code></td><td width="50%">Array of iterations for the multigrid runs.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aac08a03ceff82b6d20dc944df04f77e7">vmec_input::niter_array</a> @iten{pre_niter, Number of iterations to run after the preconditioner is activated. There special control values.<ol type="1">
-<li>-1 Default behavor.</li>
-<li>-2 Keep niter intact. <a class="el" href="namespacevmec__input.html#a9e884375c83f4df99b09234573dae7e8" title="Number of iterations to run after the preconditoner is activated.">vmec_input::pre_niter</a>} </li>
-</ol>
-</td></tr>
-<tr>
-<td width="20%"><code>time_slice</code></td><td width="50%">Time index value to label the output files.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a6aaf949325c7cad6ef734c73897b1eb5">vmec_input::time_slice</a> </td></tr>
-<tr>
-<td width="20%"><code>nstep</code></td><td width="50%">Number of iterations between screen output.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aeb71421d68cf4292a19b119b9bfb25fe">vmec_input::nstep</a> </td></tr>
-<tr>
-<td width="20%"><code>nvacskip</code></td><td width="50%">Number of iterations between vacuum responses.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a8c41130955e25f6268587e769ca668eb">vmec_input::nvacskip</a> </td></tr>
-<tr>
-<td width="20%"><code>delt</code></td><td width="50%">Time step value for minimization.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acfe484dfe2745965f6ea403fc093211d">vmec_input::delt</a> </td></tr>
-<tr>
-<td width="20%"><code>ftol</code></td><td width="50%">Force tolarance for minimization. <b>DEPRECATED</b> <b>Use</b> <a class="el" href="namespacevmec__input.html#a6befeabae016fec7224b78bd9a603519">vmec_input::ftol_array</a> instead.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a46b0691e279e51cb325e7e22d09664fa">vmec_input::ftol</a> </td></tr>
-<tr>
-<td width="20%"><code>ftol_array</code></td><td width="50%">Array of force tolarances for the multigrid runs.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a6befeabae016fec7224b78bd9a603519">vmec_input::ftol_array</a> </td></tr>
-<tr>
-<td width="20%"><code>tcon0</code></td><td width="50%">Weight factor for constraint force.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a4708b300fea260a159648ca47c59ffdc">vmec_input::tcon0</a> </td></tr>
-</table>
-<h3><a class="anchor" id="vmec_precon_control_param_sec"></a>
-Precondicioner control parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>precon_type</code></td><td width="50%">Type of preconditioner.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a545f7f4ae0d429daa57c4aaa43717fd9">vmec_input::precon_type</a> </td></tr>
-<tr>
-<td width="20%"><code>prec2d_threshold</code></td><td width="50%">Force tolarance where the preconditioner is turned on.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a3114e8b0a98ad959de2c3e0f21e32d2f">vmec_input::prec2d_threshold</a> </td></tr>
-</table>
-<h3><a class="anchor" id="vmec_giveup_control_param_sec"></a>
-Early termination control parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>lgiveup</code></td><td width="50%">Stop early if convergence is poor.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a12e6ea94c7c9767b9b080367fbbd7d58">vmec_input::lgiveup</a> </td></tr>
-<tr>
-<td width="20%"><code>fgiveup</code></td><td width="50%">Theshold tolarance for early exit.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a12e6ea94c7c9767b9b080367fbbd7d58">vmec_input::lgiveup</a> </td></tr>
-</table>
-<h3><a class="anchor" id="vmec_continue_control_param_sec"></a>
-Continue control parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>max_main_iterations</code></td><td width="50%">Number of additional iterations to use.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a8dfe78adf3e53e4f56062995ed5d9096">vmec_input::lmoreiter</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_control_flags_sec"></a>
-Control flags.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>lmove_axis</code></td><td width="50%">Allow movement of the magnetic axis.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a2da0ad312394672956e0fcae3c1e562f">vmec_input::lmove_axis</a> </td></tr>
-<tr>
-<td width="20%"><code>lmac</code></td><td width="50%">UNKNOWN</td><td width="30%"><a class="el" href="namespacevmec__input.html#aeee8ba3ec36bdee5af9386d3c974217c">vmec_input::lmac</a> </td></tr>
-<tr>
-<td width="20%"><code>lforbal</code></td><td width="50%">Use non-variational forces to ensure force balance.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a12d5d94980d7fd31fea3b50026fd13b5">vmec_input::lforbal</a> </td></tr>
-<tr>
-<td width="20%"><code>lasym</code></td><td width="50%">Allow non-stellarator symmetric terms.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aa44376c0bdcded8b56e0fe70c11c6553">vmec_input::lasym</a> </td></tr>
-<tr>
-<td width="20%"><code>lrfp</code></td><td width="50%">Run in RFP mode. When true the iota profile becomes the q profile.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a10a6fb946588f8a10c060c4fa118b01a">vmec_input::lrfp</a> </td></tr>
-<tr>
-<td width="20%"><code>loldout</code></td><td width="50%">Use text output when writting wout files. <b>DEPRECATED</b> <b></b> </td><td width="30%"><a class="el" href="namespacevmec__input.html#ab151be07a1d183aa2b518ad3de7c9aa2">vmec_input::loldout</a> </td></tr>
-<tr>
-<td width="20%"><code>ldiagno</code></td><td width="50%">Get output for diagno 1.0 and 1.5.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a64e922513970a4e726577853512ed2cb">vmec_input::ldiagno</a> </td></tr>
-<tr>
-<td width="20%"><code>lbsubs</code></td><td width="50%">Capture current sheets.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ae3eadff8c916355456de0affcbcf9722">vmec_input::lbsubs</a> </td></tr>
-<tr>
-<td width="20%"><code>lfull3d1out</code></td><td width="50%">Write out full threed1 file if force tolarance is not met.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a62905ea9c2036d628d902ede954da108">vmec_input::lfull3d1out</a> </td></tr>
-<tr>
-<td width="20%"><code>lwouttxt</code></td><td width="50%">Write out text based woutfile. Note text based wout files are deprecated.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aeb2595dff475888cae197b2514466c94">vmec_input::lwouttxt</a> </td></tr>
-<tr>
-<td width="20%"><code>lnyquist</code></td><td width="50%">Write out the full nyquest spectrum when true. Write out a truncated spectrum to match mpol and ntor used for the equilibrium.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a5edab550626b061c25f8f9cee7ff4984">vmec_input::lnyquist</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_radial_parameters_sec"></a>
-Radial parameters.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>nsin</code></td><td width="50%">Number of radial flux surfaces. <b>DEPRECATED</b> <b>Use</b> <a class="el" href="namespacevmec__input.html#a7933cb9c42f11c8609e7ddb408ddd536">vmec_input::ns_array</a> instead.</td><td width="30%"><a class="el" href="namespacevmec__input.html#accbbb711160f59e090aa24d6db561e64">vmec_input::nsin</a> </td></tr>
-<tr>
-<td width="20%"><code>ns_array</code></td><td width="50%">Number of radial flux surfaces for each grid size.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a7933cb9c42f11c8609e7ddb408ddd536">vmec_input::ns_array</a> </td></tr>
-<tr>
-<td width="20%"><code>aphi</code></td><td width="50%">Radial surface redistribution factors.</td><td width="30%"><a class="el" href="namespacevmec__input.html#af13b8bf7b06354a9aa444782a1d4207b">vmec_input::aphi</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_fourier_sizes_sec"></a>
-Fourier sizes.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>mpol</code></td><td width="50%">Total number of poloidal modes.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ad23b27aa1648d81036ade421ef1a0944">vmec_input::mpol</a> </td></tr>
-<tr>
-<td width="20%"><code>ntor</code></td><td width="50%">Largest value of the toroidal modes.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ac6f2567548169008268f14d0bc8ca4b8">vmec_input::ntor</a> </td></tr>
-<tr>
-<td width="20%"><code>nfp</code></td><td width="50%">Number of field periods.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ab0cc4e8af292085788e013dffad82886">vmec_input::nfp</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_realspace_sizes_sec"></a>
-Real space grid sizes.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>ntheta</code></td><td width="50%">Number of poloidal grid points.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a2db2a2c181b423ace37600fd6b49820a">vmec_input::ntheta</a> </td></tr>
-<tr>
-<td width="20%"><code>nzeta</code></td><td width="50%">Number of toroidal grid points.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acdf327762893b41f2bbe147f5825e396">vmec_input::nzeta</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_extcur_param_sec"></a>
-External current parameters.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>lfreeb</code></td><td width="50%">Use external fields to determine the boundary shape.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a2a939cc67d1bd46be74f843de71a6b0e">vmec_input::lfreeb</a> </td></tr>
-<tr>
-<td width="20%"><code>extcur</code></td><td width="50%">Array of external field coil currents.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a5e0be1292a877581ba37d1de76d70f92">vmec_input::extcur</a> </td></tr>
-<tr>
-<td width="20%"><code>mgrid_file</code></td><td width="50%">Path to the mgrid file.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a0543ff7c83bc6ccda2793399ce564847">vmec_input::mgrid_file</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_profile_param_sec"></a>
-Profile Parameters.</h2>
-<table border="1px" width="80%">
-</table>
-<h3><a class="anchor" id="vmec_current_profile_param_sec"></a>
-Current profile parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>curtor</code></td><td width="50%">Total toroidal current.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a16e97b659b8f357262c03090ca8ae960">vmec_input::curtor</a> </td></tr>
-<tr>
-<td width="20%"><code>ncurr</code></td><td width="50%">Control to use current profile.</td><td width="30%"><a class="el" href="namespacevmec__input.html#af26e121e53eae32bc88ceaade7c767d6">vmec_input::ncurr</a> </td></tr>
-<tr>
-<td width="20%"><code>pcurr_type</code></td><td width="50%">Current profile type.<ol type="1">
-<li>sum_cossq_s Sum of cos^2 waves. I'</li>
-<li>sum_cossq_sqrts Sum of cos^2 with respect to sqrt(s). I'</li>
-<li>sum_cossq_s_free Sum of cos^2 waves up to 7. Free position and width. I'</li>
-<li>gauss_trunc Truncated gaussian. I'</li>
-<li>two_power ac(0)*(1 - s^ac(1))^ac(2).</li>
-<li>two_power_gs ac(0)*((1 - s^ac(1))^ac(2)*(1 + Sum_{i}ac(i)*exp(-((s - ac(i + 1))/ac(i + 2))^2)).</li>
-<li>sum_atan Sum of arctangents.</li>
-<li>power_series_I Power series.</li>
-<li>power_series Power series. I' (Default)</li>
-<li>Akima_spline_Ip Akima splines. I'</li>
-<li>Akima_spline_I Akima splines.</li>
-<li>cublic_splines_Ip Cublic splines. I'</li>
-<li>cublic_splines_I Cublic splines. I</li>
-<li>pedestal Pedestal profile.</li>
-<li>rational Rational function (ratio of polynomials).</li>
-<li>line_segment_Ip Line segments. I'</li>
-<li>line_segment_I Line segments. For more information <dl class="section see"><dt>See also</dt><dd>pcurr</dd></dl>
-</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacevmec__input.html#a6f74b9f6150e9d32ebb74b169f8c3acd">vmec_input::pcurr_type</a> </td></tr>
-<tr>
-<td width="20%"><code>ac</code></td><td width="50%">Parameterized current profile coefficents.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a498f47d198fd1d6d8b4610b5baee1c8e">vmec_input::ac</a> </td></tr>
-<tr>
-<td width="20%"><code>ac_aux_s</code></td><td width="50%">Radial knot position for the current profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a9ec244c7cffbffd75b564a47d9d17c7e">vmec_input::ac_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>ac_aux_f</code></td><td width="50%">Knot amplitudes for the current profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a93ef97daaf0d372f7c9899f3d99f46a6">vmec_input::ac_aux_f</a> </td></tr>
-<tr>
-<td width="20%"><code>bloat</code></td><td width="50%">Expansion factor for the current profile.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a9e3e442cef77968189c13ca810c9b5c9">vmec_input::bloat</a> </td></tr>
-</table>
-<h3><a class="anchor" id="vmec_iota_profile_param_sec"></a>
-Rotational transform profile parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>piota_type</code></td><td width="50%">Rotational transform profile type.<ol type="1">
-<li>sum_atan Sum of arctangents.</li>
-<li>Akima_spline Akima_splines.</li>
-<li>cublic_splines Cublic splines.</li>
-<li>rational Rational function (ratio of polynomials).</li>
-<li>nice_quadratic Quadratic with rearranged coefficients.</li>
-<li><a class="el" href="namespaceline__segment.html" title="Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sig...">line_segment</a> Line segments.</li>
-<li>power_series Power series. (Default) For more information <dl class="section see"><dt>See also</dt><dd>piota</dd></dl>
-</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacevmec__input.html#a58838e9919d4190523325e6f93df68c3">vmec_input::piota_type</a> </td></tr>
-<tr>
-<td width="20%"><code>ai</code></td><td width="50%">Parameterized rotational transform profile coefficents.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a8ca31021342fd5b6d19989df9f02f366">vmec_input::ai</a> </td></tr>
-<tr>
-<td width="20%"><code>ai_aux_s</code></td><td width="50%">Radial knot position for the rotational transform profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aef5c29e2efc2d5828c8fe3de85f3a1f5">vmec_input::ai_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>ai_aux_f</code></td><td width="50%">Knot amplitudes for the rotational transform profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ac7a5617238a9e2c12ca19c75a8104f7e">vmec_input::ai_aux_f</a> </td></tr>
-</table>
-<h3><a class="anchor" id="vmec_pres_profile_param_sec"></a>
-Pressure profile parameters.</h3>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>pres_scale</code></td><td width="50%">Scaling factor for the pressure profile.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a462d153c6c2edf67fb5004ea31367a5c">vmec_input::pres_scale</a> </td></tr>
-<tr>
-<td width="20%"><code>pmass_type</code></td><td width="50%">Pressure profile type.<ol type="1">
-<li>gauss_trunc Truncated Gaussian.</li>
-<li>two_power ac(0)*(1 - s^ac(1))^ac(2).</li>
-<li>two_power_gs ac(0)*((1 - s^ac(1))^ac(2)*(1 + Sum_{i}ac(i)*exp(-((s - ac(i + 1))/ac(i + 2))^2)).</li>
-<li>two_Lorentz Two lorentz type functions mapped form s=0 to s=1.</li>
-<li>Akima_spline Akima_splines.</li>
-<li>cublic_splines Cublic splines.</li>
-<li>pedestal Pedestal profile.</li>
-<li>rational Rational function (ratio of polynomials).</li>
-<li><a class="el" href="namespaceline__segment.html" title="Module is part of the LIBSTELL. This module contains code to create a profile constructed of line sig...">line_segment</a> Line segments.</li>
-<li>power_series Power series. (Default) For more information <dl class="section see"><dt>See also</dt><dd>pmass</dd></dl>
-</li>
-</ol>
-</td><td width="30%"><a class="el" href="namespacevmec__input.html#a84667df7115cbb6867de8b6f2cb9d628">vmec_input::pmass_type</a> </td></tr>
-<tr>
-<td width="20%"><code>am</code></td><td width="50%">Parameterized rotational pressure coefficents.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acb5e220b0a338430acb1580970ac8d76">vmec_input::am</a> </td></tr>
-<tr>
-<td width="20%"><code>am_aux_s</code></td><td width="50%">Radial knot position for the pressure profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#aa825df890f34a297b2230415df82329c">vmec_input::am_aux_s</a> </td></tr>
-<tr>
-<td width="20%"><code>am_aux_f</code></td><td width="50%">Knot amplitudes for the pressure profile splines.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a47df99949e45cb18a0eaf49394abf6c3">vmec_input::am_aux_f</a> </td></tr>
-<tr>
-<td width="20%"><code>spres_ped</code></td><td width="50%">Value of s beyond which pressure profile is flat.</td><td width="30%"><a class="el" href="namespacevmec__input.html#af54313c2db00a871ff7430922618954e">vmec_input::spres_ped</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_anisotropy_parameters_sec"></a>
-Anisotropy parameters.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>bcrit</code></td><td width="50%">Hot particle energy deposition value for |B|. ANIMEC only.</td><td width="30%"><a class="el" href="namespacevmec__input.html#afa0443b5d2134e812e6aeaacb0c7d0ba">vmec_input::bcrit</a> </td></tr>
-<tr>
-<td width="20%"><code>at</code></td><td width="50%">TPERP/TPAR ANIMEC only.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a55abd85c78ede291f76872d789ff6f36">vmec_input::at</a> </td></tr>
-<tr>
-<td width="20%"><code>ah</code></td><td width="50%">PHOT/PTHERMAL ANIMEC only.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ab633a986a9c03eb6f717a0924ed0c8a4">vmec_input::ah</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_edge_parameters_sec"></a>
-Edge Boundary parameters.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>phiedge</code></td><td width="50%">Total toroidal flux.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ac2465c122151817d32d0adafc99e2d23">vmec_input::phiedge</a> </td></tr>
-<tr>
-<td width="20%"><code>rbc</code></td><td width="50%">R boundary coefficients stellarator symmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a5b4305408517750c181d1d18d473527d">vmec_input::rbc</a> </td></tr>
-<tr>
-<td width="20%"><code>rbs</code></td><td width="50%">R boundary coefficients stellarator asymmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acb9d53b6d51f57e1a388d7eab9507370">vmec_input::rbs</a> </td></tr>
-<tr>
-<td width="20%"><code>zbs</code></td><td width="50%">Z boundary coefficients stellarator symmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acb9d53b6d51f57e1a388d7eab9507370">vmec_input::rbs</a> </td></tr>
-<tr>
-<td width="20%"><code>zbc</code></td><td width="50%">Z boundary coefficients stellarator asymmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a5b4305408517750c181d1d18d473527d">vmec_input::rbc</a> </td></tr>
-<tr>
-<td width="20%"><code>mfilter_fbdy</code></td><td width="50%">Filter poloidal boundary terms.</td><td width="30%"><a class="el" href="namespacevmec__input.html#acf6b12a478233a5e7c2afa585e9f8d73">vmec_input::mfilter_fbdy</a> </td></tr>
-<tr>
-<td width="20%"><code>nfilter_fbdy</code></td><td width="50%">Filter toroidal boundary terms.</td><td width="30%"><a class="el" href="namespacevmec__input.html#afa8b6983ab5ef27b70744f492eb22b6d">vmec_input::nfilter_fbdy</a> </td></tr>
-</table>
-<h2><a class="anchor" id="vmec_axis_parameters_sec"></a>
-Inital magnetic axis guess.</h2>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>raxis_cc</code></td><td width="50%">R axis coefficients stellarator symmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a5f70d079e39e32466979afe12ba33d72">vmec_input::raxis_cc</a> </td></tr>
-<tr>
-<td width="20%"><code>raxis_cs</code></td><td width="50%">R axis coefficients stellarator asymmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a1c2b052ca3bc07f79899da911ff871c6">vmec_input::raxis_cs</a> </td></tr>
-<tr>
-<td width="20%"><code>zaxis_cs</code></td><td width="50%">R axis coefficients stellarator symmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a75da362c40e99fe95522547ff3d23400">vmec_input::zaxis_cs</a> </td></tr>
-<tr>
-<td width="20%"><code>zaxis_cc</code></td><td width="50%">R axis coefficients stellarator asymmetric.</td><td width="30%"><a class="el" href="namespacevmec__input.html#a800776b8094120efeb5eaa557fa21333">vmec_input::zaxis_cc</a> </td></tr>
-<tr>
-<td width="20%"><code>raxis</code></td><td width="50%">R axis coefficients stellarator symmetric. <b>DEPRECATED</b> <b>Use</b> <a class="el" href="namespacevmec__input.html#a5f70d079e39e32466979afe12ba33d72">vmec_input::raxis_cc</a> instead.</td><td width="30%"><a class="el" href="namespacevmec__input.html#ad9fb6741e07d6096e5f29371d371b006">vmec_input::raxis</a> </td></tr>
-<tr>
-<td width="20%"><code>zaxis</code></td><td width="50%">R axis coefficients stellarator symmetric. <b>DEPRECATED</b> <b>Use</b> <a class="el" href="namespacevmec__input.html#a75da362c40e99fe95522547ff3d23400">vmec_input::zaxis_cs</a> instead.</td><td width="30%"><a class="el" href="namespacevmec__input.html#adbe31e9709e7ec256ce023e1e9e3168e">vmec_input::zaxis</a> </td></tr>
-</table>
-<h1><a class="anchor" id="vmec_namelist_example_sec"></a>
-Example File.</h1>
-<div class="fragment"><div class="line">&amp;indata</div>
-<div class="line">  delt = 1.0,</div>
-<div class="line">  tcon0 = 2.0,</div>
-<div class="line">  nfp = 1,</div>
-<div class="line">  ns_array = 15,</div>
-<div class="line">  ftol_array = 1.0e-20,</div>
-<div class="line">  niter = 25000,</div>
-<div class="line">  nstep = 200,</div>
-<div class="line">  ntor = 0,</div>
-<div class="line">  mpol = 2,</div>
-<div class="line">  lasym = f,</div>
-<div class="line">  lfreeb = f,</div>
-<div class="line"> </div>
-<div class="line">  gamma = 0.0,</div>
-<div class="line">  phiedge = -0.05,</div>
-<div class="line">  bloat = 1.0,</div>
-<div class="line"> </div>
-<div class="line">  raxis_cc(0) = 1.0,</div>
-<div class="line">  zaxis_cs(0) = 0.0,</div>
-<div class="line">  rbc(0,0) = 1.0,</div>
-<div class="line">  rbc(0,1) = 0.25,</div>
-<div class="line">  zbs(0,0) = 0.0,</div>
-<div class="line">  zbs(0,1) = 0.25,</div>
-<div class="line"> </div>
-<div class="line">  ncurr = 1,</div>
-<div class="line">  curtor = 40000.0,</div>
-<div class="line">  pcurr_type = <span class="stringliteral">&#39;line_segment_I&#39;</span>,</div>
-<div class="line">  ac_aux_s = 0.0, 1.0,</div>
-<div class="line">  ac_aux_f = 1.0, 0.0,</div>
-<div class="line"> </div>
-<div class="line">  spres_ped = 1.0,</div>
-<div class="line">  pres_scale = 400.0,</div>
-<div class="line">  pmass_type = <span class="stringliteral">&#39;line_segment&#39;</span>,</div>
-<div class="line">  am_aux_s = 0.0, 1.0,</div>
-<div class="line">  am_aux_f = 1.0, 0.0,</div>
-<div class="line">/</div>
-<div class="line">@<span class="keyword">end </span>code</div>
-<div class="line"> </div>
-<div class="line">@section vmec_namelist_prog_ref_sec programmers reference</div>
-<div class="line">reference material for the coding to implement this namelist is found in the</div>
-<div class="line">@ref <a class="code" href="namespacevmec__input.html">vmec_input</a> module.</div>
-<div class="ttc" id="anamespacevmec__input_html"><div class="ttname"><a href="namespacevmec__input.html">vmec_input</a></div><div class="ttdoc">This file contains all the variables for a VMEC namelist input file. The module contained within does...</div><div class="ttdef"><b>Definition:</b> vmec_input.f:234</div></div>
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-<div class="header">
-  <div class="summary">
-<a href="#func-members">Functions</a>  </div>
-  <div class="headertitle">
-<div class="title">wout_diff.cpp File Reference</div>  </div>
-</div><!--header-->
-<div class="contents">
-
-<p>Utility to check the difference between two wout files.  
-<a href="#details">More...</a></p>
-<div class="textblock"><code>#include &lt;iostream&gt;</code><br />
-<code>#include &lt;vector&gt;</code><br />
-<code>#include &lt;netcdf.h&gt;</code><br />
-<code>#include &lt;algorithm&gt;</code><br />
-<code>#include &quot;<a class="el" href="vmec__test__commandline__parser_8hpp_source.html">vmec_test_commandline_parser.hpp</a>&quot;</code><br />
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-Functions</h2></td></tr>
-<tr class="memitem:af977f220228ecc35db06bffb5889e7f4"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="wout__diff_8cpp.html#af977f220228ecc35db06bffb5889e7f4">wout_quantity</a> (const std::string wout_file, const std::string name)</td></tr>
-<tr class="memdesc:af977f220228ecc35db06bffb5889e7f4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Load a quantity from a wout file.  <a href="wout__diff_8cpp.html#af977f220228ecc35db06bffb5889e7f4">More...</a><br /></td></tr>
-<tr class="separator:af977f220228ecc35db06bffb5889e7f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac0f2228420376f4db7e1274f2b41667c"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="wout__diff_8cpp.html#ac0f2228420376f4db7e1274f2b41667c">main</a> (int argc, const char *argv[])</td></tr>
-<tr class="memdesc:ac0f2228420376f4db7e1274f2b41667c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main test program.  <a href="wout__diff_8cpp.html#ac0f2228420376f4db7e1274f2b41667c">More...</a><br /></td></tr>
-<tr class="separator:ac0f2228420376f4db7e1274f2b41667c"><td class="memSeparator" colspan="2">&#160;</td></tr>
-</table>
-<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
-<div class="textblock"><p>Utility to check the difference between two wout files. </p>
-</div><h2 class="groupheader">Function Documentation</h2>
-<a id="ac0f2228420376f4db7e1274f2b41667c"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac0f2228420376f4db7e1274f2b41667c">&#9670;&nbsp;</a></span>main()</h2>
-
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-          <td class="paramtype">int&#160;</td>
-          <td class="paramname"><em>argc</em>, </td>
-        </tr>
-        <tr>
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-          <td class="paramname"><em>argv</em>[]&#160;</td>
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-
-<p>Main test program. </p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">argc</td><td>Number of commandline arguments. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">argv</td><td>Array of arguments strings. </td></tr>
-  </table>
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-<h2 class="memtitle"><span class="permalink"><a href="#af977f220228ecc35db06bffb5889e7f4">&#9670;&nbsp;</a></span>wout_quantity()</h2>
-
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-          <td class="memname">std::vector&lt;double&gt; wout_quantity </td>
-          <td>(</td>
-          <td class="paramtype">const std::string&#160;</td>
-          <td class="paramname"><em>wout_file</em>, </td>
-        </tr>
-        <tr>
-          <td class="paramkey"></td>
-          <td></td>
-          <td class="paramtype">const std::string&#160;</td>
-          <td class="paramname"><em>name</em>&#160;</td>
-        </tr>
-        <tr>
-          <td></td>
-          <td>)</td>
-          <td></td><td></td>
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-</div><div class="memdoc">
-
-<p>Load a quantity from a wout file. </p>
-<p>Quantites are loaded into a flat vector for rapid comparison.</p>
-<dl class="params"><dt>Parameters</dt><dd>
-  <table class="params">
-    <tr><td class="paramdir">[in]</td><td class="paramname">wout_file</td><td>Wout file name. </td></tr>
-    <tr><td class="paramdir">[in]</td><td class="paramname">name</td><td>Name of the wout file quantity. </td></tr>
-  </table>
-  </dd>
-</dl>
-
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-<div class="title">Command Line Arguments </div>  </div>
-</div><!--header-->
-<div class="contents">
-<div class="toc"><h3>Table of Contents</h3>
-<ul><li class="level1"><a href="#wout_diff_cl_parsing_intro">Introduction</a></li>
-<li class="level1"><a href="#wout_diff_cl_parsing_arg_sec">Command Line Arguments</a></li>
-<li class="level1"><a href="#wout_diff_cl_pasring_prog_ref_sec">Programmers Reference</a></li>
-</ul>
-</div>
-<div class="textblock"><h1><a class="anchor" id="wout_diff_cl_parsing_intro"></a>
-Introduction</h1>
-<p>This contains a description of the command line arguments. All arguments take the form of</p>
-<p><code>-arg=value</code></p>
-<h1><a class="anchor" id="wout_diff_cl_parsing_arg_sec"></a>
-Command Line Arguments</h1>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code>Argument</code></td><td width="5%">Takes Value</td><td width="75%">Discription</td></tr>
-</table>
-<table border="1px" width="80%">
-<tr>
-<td width="20%"><code><code>-h</code></code></td><td width="5%">N</td><td width="75%">Displays the help text and exits the program. </td></tr>
-<tr>
-<td width="20%"><code><code>-wout_file1</code></code></td><td width="5%">Y</td><td width="75%">First wout file name. </td></tr>
-<tr>
-<td width="20%"><code><code>-wout_file2</code></code></td><td width="5%">Y</td><td width="75%">Second wout file name. </td></tr>
-<tr>
-<td width="20%"><code><code>-quantity</code></code></td><td width="5%">Y</td><td width="75%">Wout quantity to check. </td></tr>
-<tr>
-<td width="20%"><code><code>-tol</code></code></td><td width="5%">Y</td><td width="75%">Tolarance value. </td></tr>
-</table>
-<h1><a class="anchor" id="wout_diff_cl_pasring_prog_ref_sec"></a>
-Programmers Reference</h1>
-<p>Reference material for the coding to implement command line parsing is found in the <a class="el" href="classvmec__test_1_1commandline__parser.html">vmec_test::commandline_parser</a> class. </p>
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