R-CMD-check.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on: [push, pull_request]

name: R-CMD-check

jobs:

  matrix_prep:
    runs-on: ubuntu-latest
    outputs:
      matrix: ${{ steps.set-matrix.outputs.matrix }}
    steps:
      # Required as the JSON input file needs to be read
      - uses: actions/checkout@v2      
      - id: set-matrix
        uses: JoshuaTheMiller/conditional-build-matrix@main        
        with:
          inputFile: '.github/workflows/matrix_config_check.json' 
          filter: '[?runOn==`${{ github.event_name }}` || runOn==`always`]'
          # addInclude: true
      
  R-CMD-check:
    needs: matrix_prep
    strategy:
      fail-fast: false
      matrix: ${{fromJson(needs.matrix_prep.outputs.matrix)}}
  
    runs-on: ${{ matrix.os }}
    timeout-minutes: 120

    name: ${{ matrix.os }} (${{ matrix.r }})

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      _R_CHECK_FORCE_SUGGESTS_: false
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2
      
      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-pandoc@v2
        with:
          pandoc-version: '2.18'      
          
      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          working-directory: OlinkAnalyze
          extra-packages: any::rcmdcheck, pillar

      - uses: r-lib/actions/check-r-package@v2
        with:
          working-directory: OlinkAnalyze