diff --git a/release/2024-06-11/index-en.html b/release/2024-06-11/index-en.html index 9311827..d6bca98 100644 --- a/release/2024-06-11/index-en.html +++ b/release/2024-06-11/index-en.html @@ -17,7 +17,7 @@ - + @@ -71,17 +71,18 @@

Core Ontology of Phenotyping (COP)

This version:
https://w3id.org/cop/release/2024-06-11
+
Previous version:
+
https://w3id.org/cop/release/v0.2.1
Revision:
2024-06-11
Authors:
Alexandr Uciteli
Christoph Beger
Franz Matthies
Konrad Höffner
Ralph Schäfermeier
-
See also:
-
https://zenodo.org/doi/10.5281/zenodo.5205497
-
Download serialization:
JSON-LD RDF/XML N-Triples TTL
License:
http://creativecommons.org/licenses/by/4.0/
Cite as:
Alexandr Uciteli, Christoph Beger, Franz Matthies, Konrad Höffner, Ralph Schäfermeier. Core Ontology of Phenotyping (COP). Revision: 2024-06-11. Retrieved from: https://w3id.org/cop/release/2024-06-11
+
DOI:
+
https://zenodo.org/doi/10.5281/zenodo.5205497
Vocabulary maintained at:
https://github.com/Onto-Med/COP
@@ -363,6 +364,11 @@

Classes

description +
  • + + doi + +
  • homepage @@ -373,6 +379,11 @@

    Classes

    license
    • +
  • + + modified + +
  • @@ -1850,8 +1861,10 @@

    Annotation Properties

  • created
  • creator
  • description
    • +
  • doi
  • homepage
  • license
    • +
  • modified
  • preferred Namespace Prefix
  • preferred Namespace U R I
  • ref
    • @@ -1875,6 +1888,10 @@

    creatorap descriptionap back to ToC or Annotation Property ToC

    IRI: http://purl.org/dc/elements/1.1/description

    +
    +

    doiap back to ToC or Annotation Property ToC

    +

    IRI: http://purl.org/ontology/bibo/doi

    +

    homepageap back to ToC or Annotation Property ToC

    IRI: http://xmlns.com/foaf/0.1/homepage

    @@ -1883,6 +1900,10 @@

    homepageap licenseap back to ToC or Annotation Property ToC

    IRI: http://purl.org/dc/terms/license

    +
    +

    modifiedap back to ToC or Annotation Property ToC

    +

    IRI: http://purl.org/dc/elements/1.1/modified

    +

    preferred Namespace Prefixap back to ToC or Annotation Property ToC

    IRI: http://purl.org/vocab/vann/preferredNamespacePrefix

    @@ -1915,6 +1936,389 @@

    Legend back to ToC

    + + + +
    +

    Changes from last version

    +

    Classes

    +
    Added classes +
    Deleted classes +

    Object Properties

    +
    Added object properties +
    • https://purl.org/ontology/gfo/attributiveOf +
        +
      • Added: InverseObjectProperties InverseObjectProperties(<https://purl.org/ontology/gfo/attributiveOf> <https://purl.org/ontology/gfo/hasAttributive>)
        • +
      • Added: domain https://purl.org/ontology/gfo/Attributive
        • +
      +
      • +
    • https://purl.org/ontology/gfo/hasAttributive +
        +
      • Added: InverseObjectProperties InverseObjectProperties(<https://purl.org/ontology/gfo/attributiveOf> <https://purl.org/ontology/gfo/hasAttributive>)
        • +
      • Added: Range https://purl.org/ontology/gfo/Attributive
        • +
      +
      • +
    • https://purl.org/ontology/gfo/instanceOf +
        +
      • Added: Range https://purl.org/ontology/gfo/Category
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://purl.org/ontology/gfo/instanceOf> <https://purl.org/ontology/gfo/instantiatedBy>)
        • +
      • Added: domain https://purl.org/ontology/gfo/Entity
        • +
      +
      • +
    • https://purl.org/ontology/gfo/instantiatedBy +
        +
      • Added: domain https://purl.org/ontology/gfo/Category
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://purl.org/ontology/gfo/instanceOf> <https://purl.org/ontology/gfo/instantiatedBy>)
        • +
      • Added: Range https://purl.org/ontology/gfo/Entity
        • +
      +
      • +
    • https://w3id.org/cop/applicableFor +
        +
      • Added: Range https://w3id.org/cop/PhenotypeQuery
        • +
      • Added: domain https://w3id.org/cop/PhenotypeAlgorithm
        • +
      +
      • +
    • https://w3id.org/cop/basicRestrictionOf +
        +
      • Added: domain https://w3id.org/cop/BasicPhenotypeRestriction
        • +
      • Added: SubProperty of https://w3id.org/cop/restrictionOf
        • +
      • Added: Range https://w3id.org/cop/BasicPhenotypeClass
        • +
      +
      • +
    • https://w3id.org/cop/derivedFrom +
        +
      • Added: domain https://w3id.org/cop/DerivedPhenotypeClass
        • +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      +
      • +
    • https://w3id.org/cop/derivedRestrictionOf +
        +
      • Added: domain https://w3id.org/cop/DerivedPhenotypeRestriction
        • +
      • Added: SubProperty of https://w3id.org/cop/restrictionOf
        • +
      • Added: Range https://w3id.org/cop/DerivedPhenotypeClass
        • +
      +
      • +
    • https://w3id.org/cop/hasExclusion +
        +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      • Added: SubProperty of https://w3id.org/cop/hasQueryParameter
        • +
      • Added: domain https://w3id.org/cop/PhenotypeQuery
        • +
      +
      • +
    • https://w3id.org/cop/hasInclusion +
        +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      • Added: domain https://w3id.org/cop/PhenotypeQuery
        • +
      • Added: SubProperty of https://w3id.org/cop/hasQueryParameter
        • +
      +
      • +
    • https://w3id.org/cop/hasPhenotype +
        +
      • Added: SubProperty of https://purl.org/ontology/gfo/hasAttributive
        • +
      • Added: Range https://w3id.org/cop/Phenotype
        • +
      • Added: domain http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Organism
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/hasPhenotype> <https://w3id.org/cop/phenotypeOf>)
        • +
      +
      • +
    • https://w3id.org/cop/hasProjection +
        +
      • Added: SubProperty of https://w3id.org/cop/hasQueryParameter
        • +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      • Added: domain https://w3id.org/cop/PhenotypeQuery
        • +
      +
      • +
    • https://w3id.org/cop/hasQueryParameter +
        +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      • Added: domain https://w3id.org/cop/PhenotypeQuery
        • +
      • Added: SubProperty of http://www.w3.org/2002/07/owl#topObjectProperty
        • +
      +
      • +
    • https://w3id.org/cop/hasRepresentationAttribute +
        +
      • Added: Range https://w3id.org/cop/RepresentationEntity
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/hasRepresentationAttribute> <https://w3id.org/cop/representationAttributeOf>)
        • +
      • Added: domain https://purl.org/ontology/gfo/Entity
        • +
      +
      • +
    • https://w3id.org/cop/implementedBy +
        +
      • Added: Range http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17146
        • +
      • Added: domain http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16275
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/implementedBy> <https://w3id.org/cop/implements>)
        • +
      +
      • +
    • https://w3id.org/cop/implements +
        +
      • Added: Range http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16275
        • +
      • Added: domain http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17146
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/implementedBy> <https://w3id.org/cop/implements>)
        • +
      +
      • +
    • https://w3id.org/cop/phenotypeOf +
        +
      • Added: Range http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Organism
        • +
      • Added: domain https://w3id.org/cop/Phenotype
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/hasPhenotype> <https://w3id.org/cop/phenotypeOf>)
        • +
      • Added: SubProperty of https://purl.org/ontology/gfo/attributiveOf
        • +
      +
      • +
    • https://w3id.org/cop/realises +
        +
      • Added: domain http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17146
        • +
      • Added: Range https://purl.org/ontology/gfo/Process
        • +
      +
      • +
    • https://w3id.org/cop/representationAttributeOf +
        +
      • Added: domain https://w3id.org/cop/RepresentationEntity
        • +
      • Added: InverseObjectProperties InverseObjectProperties(<https://w3id.org/cop/hasRepresentationAttribute> <https://w3id.org/cop/representationAttributeOf>)
        • +
      • Added: Range https://purl.org/ontology/gfo/Entity
        • +
      +
      • +
    • https://w3id.org/cop/represents +
        +
      • Added: domain https://w3id.org/cop/PhenotypeModel
        • +
      • Added: Range https://w3id.org/cop/PhenotypeClass
        • +
      +
      • +
    • https://w3id.org/cop/restrictionOf +
        +
      • Added: domain https://w3id.org/cop/PhenotypeRestriction
        • +
      • Added: Range https://w3id.org/cop/UnrestrictedPhenotypeClass
        • +
      +
      • +
    Deleted object properties +

    Data Properties

    +
    Deleted data properties +
    +

    Acknowledgments back to ToC

    diff --git a/release/2024-06-11/ontology.jsonld b/release/2024-06-11/ontology.jsonld index ae10051..65d8bb1 100644 --- a/release/2024-06-11/ontology.jsonld +++ b/release/2024-06-11/ontology.jsonld @@ -653,6 +653,9 @@ }, { "@id" : "http://purl.org/dc/elements/1.1/description", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] +}, { + "@id" : "http://purl.org/dc/elements/1.1/modified", + "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] }, { "@id" : "http://purl.org/dc/elements/1.1/title", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] @@ -662,6 +665,9 @@ }, { "@id" : "http://purl.org/dc/terms/references", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] +}, { + "@id" : "http://purl.org/ontology/bibo/doi", + "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] }, { "@id" : "http://purl.org/vocab/vann/preferredNamespacePrefix", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] @@ -827,6 +833,10 @@ "@language" : "en", "@value" : "The Core Ontology of Phenotyping (COP) defines core entities and their relationships that are relevant for modelling phenotypic knowledge and developing phenotyping software." } ], + "http://purl.org/dc/elements/1.1/modified" : [ { + "@type" : "http://www.w3.org/2001/XMLSchema#date", + "@value" : "2024-06-11" + } ], "http://purl.org/dc/elements/1.1/title" : [ { "@language" : "en", "@value" : "Core Ontology of Phenotyping (COP)" @@ -841,6 +851,9 @@ }, { "@value" : "National Cancer Institute NCI Thesaurus: https://ncit.nci.nih.gov; https://bioportal.bioontology.org/ontologies/NCIT" } ], + "http://purl.org/ontology/bibo/doi" : [ { + "@id" : "https://zenodo.org/doi/10.5281/zenodo.5205497" + } ], "http://purl.org/vocab/vann/preferredNamespacePrefix" : [ { "@value" : "cop" } ], @@ -854,13 +867,14 @@ "@language" : "en", "@value" : "Core Ontology of Phenotyping" } ], - "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { - "@id" : "https://zenodo.org/doi/10.5281/zenodo.5205497" + "http://www.w3.org/2002/07/owl#priorVersion" : [ { + "@id" : "https://w3id.org/cop/release/v0.2.1" } ], "http://www.w3.org/2002/07/owl#versionIRI" : [ { "@id" : "https://w3id.org/cop/release/2024-06-11" } ], "http://www.w3.org/2002/07/owl#versionInfo" : [ { + "@type" : "http://www.w3.org/2001/XMLSchema#date", "@value" : "2024-06-11" } ], "http://xmlns.com/foaf/0.1/homepage" : [ { diff --git a/release/2024-06-11/ontology.nt b/release/2024-06-11/ontology.nt index 5dd4403..239ed18 100644 --- a/release/2024-06-11/ontology.nt +++ b/release/2024-06-11/ontology.nt @@ -8,17 +8,19 @@ "Ralph Schäfermeier" . "Die Core Ontology of Phenotyping (COP) definiert zentrale Entitäten und ihre Beziehungen, die für die Modellierung phänotypischen Wissens und die Entwicklung von Software für die Phänotypisierung relevant sind."@de . "The Core Ontology of Phenotyping (COP) defines core entities and their relationships that are relevant for modelling phenotypic knowledge and developing phenotyping software."@en . + "2024-06-11"^^ . "Core Ontology of Phenotyping (COP)"@en . . "GFO-Bio: https://www.onto-med.de/ontologies/gfo-bio; https://bioportal.bioontology.org/ontologies/GFO-BIO" . "General Formal Ontology (GFO): https://onto-med.github.io/GFO; https://www.onto-med.de/ontologies/gfo" . "National Cancer Institute NCI Thesaurus: https://ncit.nci.nih.gov; https://bioportal.bioontology.org/ontologies/NCIT" . + . "cop" . "https://w3id.org/cop/" . . "Core Ontology of Phenotyping"@en . - . - "2024-06-11" . + . + "2024-06-11"^^ . "https://github.com/Onto-Med/COP" . # # @@ -41,6 +43,9 @@ # http://purl.org/dc/elements/1.1/description . # +# http://purl.org/dc/elements/1.1/modified + . +# # http://purl.org/dc/elements/1.1/title . # @@ -50,6 +55,9 @@ # http://purl.org/dc/terms/references . # +# http://purl.org/ontology/bibo/doi + . +# # http://purl.org/vocab/vann/preferredNamespacePrefix . # diff --git a/release/2024-06-11/ontology.owl b/release/2024-06-11/ontology.owl index 3e82927..6405b76 100644 --- a/release/2024-06-11/ontology.owl +++ b/release/2024-06-11/ontology.owl @@ -7,6 +7,7 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:doap="http://usefulinc.com/ns/doap#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" @@ -22,17 +23,19 @@ Ralph Schäfermeier Die Core Ontology of Phenotyping (COP) definiert zentrale Entitäten und ihre Beziehungen, die für die Modellierung phänotypischen Wissens und die Entwicklung von Software für die Phänotypisierung relevant sind. The Core Ontology of Phenotyping (COP) defines core entities and their relationships that are relevant for modelling phenotypic knowledge and developing phenotyping software. + 2024-06-11 Core Ontology of Phenotyping (COP) GFO-Bio: https://www.onto-med.de/ontologies/gfo-bio; https://bioportal.bioontology.org/ontologies/GFO-BIO General Formal Ontology (GFO): https://onto-med.github.io/GFO; https://www.onto-med.de/ontologies/gfo National Cancer Institute NCI Thesaurus: https://ncit.nci.nih.gov; https://bioportal.bioontology.org/ontologies/NCIT + cop https://w3id.org/cop/ Core Ontology of Phenotyping - - 2024-06-11 + + 2024-06-11 https://github.com/Onto-Med/COP @@ -78,6 +81,13 @@ + + + + + + + @@ -99,6 +109,13 @@ + + + + + + + diff --git a/release/2024-06-11/ontology.ttl b/release/2024-06-11/ontology.ttl index d8f5a93..25d6fd3 100644 --- a/release/2024-06-11/ontology.ttl +++ b/release/2024-06-11/ontology.ttl @@ -16,17 +16,19 @@ "Ralph Schäfermeier" ; "Die Core Ontology of Phenotyping (COP) definiert zentrale Entitäten und ihre Beziehungen, die für die Modellierung phänotypischen Wissens und die Entwicklung von Software für die Phänotypisierung relevant sind."@de , "The Core Ontology of Phenotyping (COP) defines core entities and their relationships that are relevant for modelling phenotypic knowledge and developing phenotyping software."@en ; + "2024-06-11"^^xsd:date ; "Core Ontology of Phenotyping (COP)"@en ; ; "GFO-Bio: https://www.onto-med.de/ontologies/gfo-bio; https://bioportal.bioontology.org/ontologies/GFO-BIO" , "General Formal Ontology (GFO): https://onto-med.github.io/GFO; https://www.onto-med.de/ontologies/gfo" , "National Cancer Institute NCI Thesaurus: https://ncit.nci.nih.gov; https://bioportal.bioontology.org/ontologies/NCIT" ; + ; "cop" ; "https://w3id.org/cop/" ; ; rdfs:label "Core Ontology of Phenotyping"@en ; - rdfs:seeAlso ; - owl:versionInfo "2024-06-11" ; + owl:priorVersion ; + owl:versionInfo "2024-06-11"^^xsd:date ; "https://github.com/Onto-Med/COP" . ################################################################# @@ -49,6 +51,10 @@ rdf:type owl:AnnotationProperty . +### http://purl.org/dc/elements/1.1/modified + rdf:type owl:AnnotationProperty . + + ### http://purl.org/dc/elements/1.1/title rdf:type owl:AnnotationProperty . @@ -61,6 +67,10 @@ rdf:type owl:AnnotationProperty . +### http://purl.org/ontology/bibo/doi + rdf:type owl:AnnotationProperty . + + ### http://purl.org/vocab/vann/preferredNamespacePrefix rdf:type owl:AnnotationProperty . diff --git a/release/2024-06-11/provenance/provenance-en.html b/release/2024-06-11/provenance/provenance-en.html index c934072..d3c233e 100644 --- a/release/2024-06-11/provenance/provenance-en.html +++ b/release/2024-06-11/provenance/provenance-en.html @@ -9,7 +9,8 @@

    Provenance for Core Ontology of Phenotyping (COP) Documentation (https://w3id.org/cop/release/2024-06-11)

    back to documentation. TTL format

    diff --git a/release/2024-06-11/provenance/provenance-en.ttl b/release/2024-06-11/provenance/provenance-en.ttl index 7fa9b64..022d442 100644 --- a/release/2024-06-11/provenance/provenance-en.ttl +++ b/release/2024-06-11/provenance/provenance-en.ttl @@ -10,6 +10,7 @@ prov:wasAttributedTo :agent3; prov:wasAttributedTo :agent4; prov:wasAttributedTo ,; + prov:wasRevisionOf ; . :agent0 a prov:Agent; foaf:name "Alexandr Uciteli". :agent1 a prov:Agent; foaf:name "Christoph Beger".