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db-data-config-pih.xml
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<dataConfig>
<dataSource name="pih" type="JdbcDataSource" batchSize="-1" driver="com.mysql.jdbc.Driver" url="jdbc:mysql://localhost/omrs19_pih" user="omrs19_pih" password="OpenCL_8"/>
<document>
<entity name="concept_pih" datasource="pih"
query="
/* unique records 49271 */
select
/* id - this field should only contain the concept ID */
c.concept_id as id
/* full_id - this field can contain the dictionary code and concept id (what you do in the current id field) - switch the order and separate with an underscore (e.g. CIEL_104) */
,CONCAT('PIH_',CAST(c.concept_id AS char)) as full_id
,c.uuid as uuid
/* full_uuid - same as fullid, except use the uuid - (e.g. PIH_104AAAAAAAAAA...) */
,CONCAT('PIH_',c.uuid) as full_uuid
/* pname - this should contain the preferred name only (the same as the current name field) */
,cn.name as pname
/* name - this should contain the entire list of synonyms (not just the preferred name); add in a separator that can be used to reliably parse the field; this is so that when a user searches against a name, the normal behavior will be to search all the names (e.g. 'name:malaria') */
,csy.name
/* description - this should contain all the descriptions; add a separator that can be used to reliably parse the field */
,cdesc.description as description
,c.date_created as timestamp
/* dict - rename the source field to dict, since source is used to refer to map sources and might confuse people */
,'PIH' as dict
,CASE WHEN c.retired=1 THEN 'retired' ELSE '' END as retired
,cc.name as class
,cd.name datatype
/* questions - this should contain the preferred name and concept ID of all questions for this concept; add a separator that can be used to reliably parse the field (same as above) */
,cqs.question
/* answers - this should contain the preferred name and concept ID of all answers to this concept; add a separator that can be used to reliably parse the field (same as above) */
,cas.answer
,AMPATH
,`HL-7 CVX`
,`HL7 2.x Route of Administration`
,`ICD-10-WHO`
,`ICD-10-WHO 2nd`
,`ICD-10-WHO NP`
,`ICD-10-WHO NP2`
,LOINC
,`MVP Amazon Server 174`
,`org.openmrs.module.mdrtb`
/* ,PIH */
,`PIH Malawi`
,RxNORM
,`RxNORM Comb`
,`SNOMED CT`
,`SNOMED MVP`
,`SNOMED NP`
,`SNOMED US`
,`ICPC-2`
, local
,`MVP/CIEL at PIH`
,`Rwanda HMIS Report 2012 01 20`
,`ZL/PIH installation in Haiti`
, hi_absolute
, hi_critical
, hi_normal
, low_absolute
, low_critical
, low_normal
, units
, precise
,c.is_set as is_set
,set_parent
,set_children
,set_sibling
from omrs19_pih.concept c
left join omrs19_pih.concept_class cc
on c.class_id=cc.concept_class_id
left join omrs19_pih.concept_name cn
on c.concept_id = cn.concept_id
join
(select c_d.concept_id, group_concat(cn_d.name SEPARATOR ' | ') as name from omrs19_pih.concept c_d
left join omrs19_pih.concept_name cn_d
on cn_d.concept_id = c_d.concept_id
group by c_d.concept_id
) as csy
on c.concept_id=csy.concept_id
left join omrs19_pih.concept_datatype cd
on c.datatype_id = cd.concept_datatype_id
left join omrs19_pih.concept_description cdesc
on c.concept_id = cdesc.concept_id
left join
(SELECT c.concept_id,ca.answer_concept
, group_concat(CONCAT(CAST(ca.concept_id AS CHAR),' : '),cn.name SEPARATOR ' | ') as question
FROM omrs19_pih.concept c
left join omrs19_pih.concept_answer ca
on c.concept_id = ca.answer_concept
left join omrs19_pih.concept_name cn
on cn.concept_id = ca.concept_id
where cn.locale='en' and cn.concept_name_type='FULLY_SPECIFIED'
group by c.concept_id
) as cqs
on c.concept_id=cqs.concept_id
left join
(SELECT c_s.concept_id,ca_s.answer_concept, group_concat(CONCAT(CAST(ca_s.answer_concept AS CHAR),' : ')
, cn_s.name SEPARATOR ' | ') as answer
FROM omrs19_pih.concept c_s
join omrs19_pih.concept_answer ca_s
on c_s.concept_id = ca_s.concept_id
join omrs19_pih.concept_name cn_s
on cn_s.concept_id = ca_s.answer_concept
where cn_s.locale='en' and cn_s.concept_name_type='FULLY_SPECIFIED'
group by c_s.concept_id
) as cas
on c.concept_id=cas.concept_id
left join mcl.mcl_mapsource_index mcli
on c.concept_id=mcli.concept_id
left join omrs19_pih.concept_numeric cnu
on c.concept_id = cnu.concept_id
/* set Children */
left join
(SELECT cs.concept_set, group_concat(CONCAT(CAST(cs.concept_id AS CHAR),' : ' ),cn.name separator ' | ' )
as set_children
FROM omrs19_pih.concept_set cs
left join omrs19_pih.concept_name cn
on cs.concept_id = cn.concept_id
where cn.locale='en' and cn.concept_name_type='FULLY_SPECIFIED'
group by cs.concept_set
)as sc
on sc.concept_set = c.concept_id
/* set parents */
left join
(SELECT cs.concept_id, group_concat(CONCAT(CAST(cs.concept_set AS CHAR),' : ' ),cn.name separator ' | ' )
as set_parent
FROM omrs19_pih.concept_set cs
left join omrs19_pih.concept_name cn
on cs.concept_set = cn.concept_id
where cn.locale='en' and cn.concept_name_type='FULLY_SPECIFIED'
group by concept_id
) as sp
on sp.concept_id = c.concept_id
/* sibling */
left join
(select cs.concept_id, set_sibling from concept_set cs
left join
(SELECT group_concat(CONCAT(CAST(cs_i.concept_id as char),' : '),cn.name separator ' | ' ) as set_sibling, concept_set
FROM omrs19_pih.concept_set cs_i
left join concept_name cn
on cs_i.concept_id = cn.concept_id
where
cn.locale='en' and
cn.concept_name_type='FULLY_SPECIFIED'
group by concept_set
) as si
on si.concept_set=cs.concept_set
) as sibs
on c.concept_id = sibs.concept_id
where mcli.dict_id=6 and cn.locale='en' and cn.concept_name_type='FULLY_SPECIFIED'
/*LIMIT 200*/ ;
">
<field column="full_id" name="full_id" />
<field column="id" name="id" />
<field column="uuid" name="uuid" />
<field column="full_uuid" name="full_uuid" />
<field column="name" name="name" />
<field column="pname" name="pname" />
<field column="description" name="description" />
<field column="timestamp" name="timestamp"/>
<field column="dict" name="dict" />
<field column="retired" name="retired" />
<field column="class" name="class" />
<field column="datatype" name="datatype" />
<field column="answer" name="answer" />
<field column="question" name="question" />
</entity>
</document>
</dataConfig>