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runningOrder.md

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Overall Running Order

This file describes the running order to produce a final set of tables/plots.

Note that there are many earlier steps to processing: processing CAPTURE-24 data; training the relevant machine learning models, including in Leave-One-Participant-Out Analysis; processing UK Biobank accelerometer data; and extracting UK Biobank participant and demographic data. Code/commands for these steps can be found under classifierDevelopment, ukbAccProcessing, and ukbDataPrep.

Running Order: R Scripts to produce final results

  1. Set name_of_current_run in allRProcessing.R
  2. Clear environment
  3. Source allRProcessing.R
  4. Commit again to make sure lockfile correctly recorded.

Additional Results Generated in Python

  1. On BMRC system, source skylake environment (on other systems, environment can be based on files under environments/pip_envs)
  2. Run: classifierDevelopment/scripts/reportingPerformance/produce_performance_summaries.py