makefile-nersc

RMATPATH = include/common/GTgraph/R-MAT
SPRNPATH = include/common/GTgraph/sprng2.0-lite
SEQANPATH = seqan
CXXOPTPATH = cxxopts
LOGANPATH = loganGPU
XAVIER_DIR=xavier
include include/common/GTgraph/Makefile.var
INCLUDE = -I$(SPRNPATH)/include -I$(LOGANPATH) -I$(SEQANPATH) # -I${XAVIER_DIR}/include
MLKINCLUDE = -I/opt/intel/composer_xe_2015.0.039/mkl/include
LIBPATH = -L/opt/intel/composer_xe_2015.0.039/mkl/lib 

COMPILER = g++
COMPILER_GPU = nvcc
CUDAFLAGS = -arch=sm_70 -O3 -maxrregcount=32 -std=c++14 -Xcompiler -fopenmp -w 
CC = gcc
#ASFLAGS = -fsanitize=address -fsanitize-address-use-after-scope

CFLAGS =-std=c++11 -fpermissive -w -O3 -I. -c
PARCFLAGS = -O3 -fopenmp -c

CFLAGS += $(ASFLAGS)
PARCFLAGS += $(ASFLAGS)
ASAN_OPTIONS=strict_string_checks=1:detect_stack_use_after_return=1:check_initialization_order=1:strict_init_order=1

sprng:	
	(cd $(SPRNPATH); $(MAKE); cd ../..)

cxxopt:	
	(cd $(CXXOPTPATH); cmake .; $(MAKE); cd ..)

rmat:	sprng
	(cd $(RMATPATH); $(MAKE); cd ../..)

LIBS = -L$(CURDIR)/libbloom/build -lbloom -lpthread -lbz2 -lz

Buffer.o: kmercode/Buffer.c
	$(CC) $(PARCFLAGS) -o Buffer.o kmercode/Buffer.c

fq_reader.o: kmercode/fq_reader.c
	$(CC) $(PARCFLAGS) -std=gnu99  -o fq_reader.o kmercode/fq_reader.c

hash_funcs.o: kmercode/hash_funcs.c
	$(CC) $(PARCFLAGS) -o hash_funcs.o kmercode/hash_funcs.c

bloomlib:
	$(MAKE) -C libbloom all

xavierlib:
	$(MAKE) -C libbloom all

optlist.o:	optlist/optlist.c optlist/optlist.h
	$(CC) $(CFLAGS) $<

Kmer.o:	kmercode/Kmer.cpp
	$(COMPILER) $(PARCFLAGS) -std=c++11 -o Kmer.o kmercode/Kmer.cpp

# flags defined in include/common/GTgraph/Makefile.var
bella: src/main.cpp hash_funcs.o fq_reader.o Buffer.o Kmer.o optlist.o rmat bloomlib
	$(COMPILER) -std=c++14 -w -O3 $(ASFLAGS) $(INCLUDE) -mavx2 -fopenmp -fpermissive -o bella hash_funcs.o Kmer.o Buffer.o fq_reader.o optlist.o src/main.cpp ${LIBS} 

# GPU build
bella-gpu: src/main.cu hash_funcs.o fq_reader.o Buffer.o Kmer.o optlist.o rmat bloomlib
	$(COMPILER_GPU) $(CUDAFLAGS) $(INCLUDE) -o bella hash_funcs.o Kmer.o Buffer.o fq_reader.o optlist.o src/main.cu ${LIBS} -D__NVCC__

# makes evaluation
result:
	(cd benchmark; make result; cd ..)
# add -D__LIBCUCKOO_SERIAL to run lubcuckoo in a single thread
clean:
	(cd include/common/GTgraph; make clean; cd ../..)
	rm -f *.o
	rm -f bella
	$(MAKE) -C libbloom clean