supply n in smoother for savgol?

[optimsari]

I tried this
tmp.smooths <- smoother(tmp, method = list(savgol = list(p = 3,n=5)),paralell = cl)

but I got error:

error in checkForRemoteErrors(val) :
one node produced an error: argument not used (n = 5)

but it worked without any error when I removed: , paralell=cl

tmp.smooths <- smoother(tmp, method = list(savgol = list(p = 3,n=5)))# worked fine

I need to work with parallel, any idea?

[kablag]

link on discussion start a90f2e0#commitcomment-17576598

In my case version without paralell
tmp.smooths <- smoother(tmp, method = list(savgol = list(p = 3,n=5)))
doesn't work too. And I don't see code that passes n to sgolayfilt

savgol = do.call(function(y, p = 3)
                      sgolayfilt(x = y, p = p)
                      , c(list(y = y.tmp), method[[i]])),

By default sgolayfilt uses n = p + 3 - p%%2 . Maybe it will help you.
What version of chipPCR do you use?

[michbur]

I pushed the improved version of smoother. Install this version using install_github("michbur/chipPCR") and let me know if the problem persists.

[kablag]

For me works fine.
I am using Windows.