diff --git a/R/data.R b/R/data.R
deleted file mode 100644
index 49fcd6c..0000000
--- a/R/data.R
+++ /dev/null
@@ -1,418 +0,0 @@
-#' A simulated Simple Stock Synthesis model for a "cod-like" stock.
-#'
-#' Stock Synthesis output read by \code{\link[r4ss]{SS_output}()}
-#'
-#' @docType data
-#'
-#' @format Large list of 184 objects generated using \pkg{r4ss}
-#' \describe{
-#'  \item{Data_File}{Data_File}
-#'  \item{Control_File}{Control_File}
-#'  \item{definitions}{definitions}
-#'  \item{fleet_ID}{fleet_ID}
-#'  \item{fleet_type}{fleet_type}
-#'  \item{fleet_timing}{fleet_timing}
-#'  \item{fleet_area}{fleet_area}
-#'  \item{catch_units}{catch_units}
-#'  \item{catch_se}{catch_se}
-#'  \item{equ_catch_se}{equ_catch_se}
-#'  \item{survey_units}{survey_units}
-#'  \item{survey_error}{survey_error}
-#'  \item{IsFishFleet}{IsFishFleet}
-#'  \item{nfishfleets}{nfishfleets}
-#'  \item{nfleets}{nfleets}
-#'  \item{nsexes}{nsexes}
-#'  \item{ngpatterns}{ngpatterns}
-#'  \item{lbins}{lbins}
-#'  \item{Lbin_method}{Lbin_method}
-#'  \item{nlbins}{nlbins}
-#'  \item{lbinspop}{lbinspop}
-#'  \item{nlbinspop}{nlbinspop}
-#'  \item{sizebinlist}{sizebinlist}
-#'  \item{agebins}{agebins}
-#'  \item{nagebins}{nagebins}
-#'  \item{accuage}{accuage}
-#'  \item{nareas}{nareas}
-#'  \item{startyr}{startyr}
-#'  \item{endyr}{endyr}
-#'  \item{nseasons}{nseasons}
-#'  \item{seasfracs}{seasfracs}
-#'  \item{seasdurations}{seasdurations}
-#'  \item{N_sub_seasons}{N_sub_seasons}
-#'  \item{Spawn_month}{Spawn_month}
-#'  \item{Spawn_seas}{Spawn_seas}
-#'  \item{Spawn_timing_in_season}{Spawn_timing_in_season}
-#'  \item{Retro_year}{Retro_year}
-#'  \item{N_forecast_yrs}{N_forecast_yrs}
-#'  \item{Empirical_wt_at_age}{Empirical_wt_at_age}
-#'  \item{N_bio_patterns}{N_bio_patterns}
-#'  \item{N_platoons}{N_platoons}
-#'  \item{NatMort_option}{NatMort_option}
-#'  \item{GrowthModel_option}{GrowthModel_option}
-#'  \item{Maturity_option}{Maturity_option}
-#'  \item{Fecundity_option}{Fecundity_option}
-#'  \item{Start_from_par}{Start_from_par}
-#'  \item{Do_all_priors}{Do_all_priors}
-#'  \item{Use_softbound}{Use_softbound}
-#'  \item{N_nudata}{N_nudata}
-#'  \item{Max_phase}{Max_phase}
-#'  \item{Current_phase}{Current_phase}
-#'  \item{Jitter}{Jitter}
-#'  \item{ALK_tolerance}{ALK_tolerance}
-#'  \item{nforecastyears}{nforecastyears}
-#'  \item{morph_indexing}{morph_indexing}
-#'  \item{MGparmAdj}{MGparmAdj}
-#'  \item{forecast_selectivity}{forecast_selectivity}
-#'  \item{SelSizeAdj}{SelSizeAdj}
-#'  \item{SelAgeAdj}{SelAgeAdj}
-#'  \item{recruitment_dist}{recruitment_dist}
-#'  \item{recruit}{recruit}
-#'  \item{SPAWN_RECR_CURVE}{SPAWN_RECR_CURVE}
-#'  \item{breakpoints_for_bias_adjustment_ramp}{breakpoints_for_bias_adjustment_ramp}
-#'  \item{SpawnOutputUnits}{SpawnOutputUnits}
-#'  \item{biology}{biology}
-#'  \item{FecType}{FecType}
-#'  \item{FecPar1name}{FecPar1name}
-#'  \item{FecPar2name}{FecPar2name}
-#'  \item{FecPar1}{FecPar1}
-#'  \item{FecPar2}{FecPar2}
-#'  \item{M_type}{M_type}
-#'  \item{Natural_Mortality_Bmark}{Natural_Mortality_Bmark}
-#'  \item{Natural_Mortality_endyr}{Natural_Mortality_endyr}
-#'  \item{Growth_Parameters}{Growth_Parameters}
-#'  \item{growthCVtype}{growthCVtype}
-#'  \item{endgrowth}{endgrowth}
-#'  \item{wtatage_switch}{wtatage_switch}
-#'  \item{mean_body_wt}{mean_body_wt}
-#'  \item{growthseries}{growthseries}
-#'  \item{growthvaries}{growthvaries}
-#'  \item{sizeselex}{sizeselex}
-#'  \item{ageselex}{ageselex}
-#'  \item{F_method}{F_method}
-#'  \item{exploitation}{exploitation}
-#'  \item{catch}{catch}
-#'  \item{summary_age}{summary_age}
-#'  \item{timeseries}{timeseries}
-#'  \item{spawnseas}{spawnseas}
-#'  \item{mainmorphs}{mainmorphs}
-#'  \item{birthseas}{birthseas}
-#'  \item{depletion_method}{depletion_method}
-#'  \item{depletion_basis}{depletion_basis}
-#'  \item{discard}{discard}
-#'  \item{discard_type}{discard_type}
-#'  \item{DF_discard}{DF_discard}
-#'  \item{discard_spec}{discard_spec}
-#'  \item{mnwgt}{mnwgt}
-#'  \item{DF_mnwgt}{DF_mnwgt}
-#'  \item{sprseries}{sprseries}
-#'  \item{managementratiolabels}{managementratiolabels}
-#'  \item{F_report_basis}{F_report_basis}
-#'  \item{B_ratio_denominator}{B_ratio_denominator}
-#'  \item{sprtarg}{sprtarg}
-#'  \item{btarg}{btarg}
-#'  \item{minbthresh}{minbthresh}
-#'  \item{Kobe_warn}{Kobe_warn}
-#'  \item{Kobe_MSY_basis}{Kobe_MSY_basis}
-#'  \item{Kobe}{Kobe}
-#'  \item{index_variance_tuning_check}{index_variance_tuning_check}
-#'  \item{cpue}{cpue}
-#'  \item{natage}{natage}
-#'  \item{natage_annual_1_no_fishery}{natage_annual_1_no_fishery}
-#'  \item{natage_annual_2_with_fishery}{natage_annual_2_with_fishery}
-#'  \item{batage}{batage}
-#'  \item{natlen}{natlen}
-#'  \item{batlen}{batlen}
-#'  \item{fatage}{fatage}
-#'  \item{discard_at_age}{discard_at_age}
-#'  \item{catage}{catage}
-#'  \item{movement}{movement}
-#'  \item{ALK}{ALK}
-#'  \item{N_ageerror_defs}{N_ageerror_defs}
-#'  \item{equil_yield}{equil_yield}
-#'  \item{Z_at_age}{Z_at_age}
-#'  \item{M_at_age}{M_at_age}
-#'  \item{Dynamic_Bzero}{Dynamic_Bzero}
-#'  \item{comp_data_exists}{comp_data_exists}
-#'  \item{lendbase}{lendbase}
-#'  \item{sizedbase}{sizedbase}
-#'  \item{agedbase}{agedbase}
-#'  \item{condbase}{condbase}
-#'  \item{ghostagedbase}{ghostagedbase}
-#'  \item{ghostcondbase}{ghostcondbase}
-#'  \item{ghostlendbase}{ghostlendbase}
-#'  \item{ladbase}{ladbase}
-#'  \item{wadbase}{wadbase}
-#'  \item{tagdbase1}{tagdbase1}
-#'  \item{tagdbase2}{tagdbase2}
-#'  \item{len_comp_fit_table}{len_comp_fit_table}
-#'  \item{size_comp_fit_table}{size_comp_fit_table}
-#'  \item{derived_quants}{derived_quants}
-#'  \item{parameters}{parameters}
-#'  \item{FleetNames}{FleetNames}
-#'  \item{repfiletime}{repfiletime}
-#'  \item{SRRtype}{SRRtype}
-#'  \item{Pstar_sigma}{Pstar_sigma}
-#'  \item{OFL_sigma}{OFL_sigma}
-#'  \item{CoVar}{CoVar}
-#'  \item{highcor}{highcor}
-#'  \item{lowcor}{lowcor}
-#'  \item{corstats}{corstats}
-#'  \item{stdtable}{stdtable}
-#'  \item{recruitpars}{recruitpars}
-#'  \item{RecrDistpars}{RecrDistpars}
-#'  \item{wtatage}{wtatage}
-#'  \item{jitter_info}{jitter_info}
-#'  \item{SS_version}{SS_version}
-#'  \item{SS_versionshort}{SS_versionshort}
-#'  \item{SS_versionNumeric}{SS_versionNumeric}
-#'  \item{StartTime}{StartTime}
-#'  \item{RunTime}{RunTime}
-#'  \item{Files_used}{Files_used}
-#'  \item{Nwarnings}{Nwarnings}
-#'  \item{warnings}{warnings}
-#'  \item{likelihoods_used}{likelihoods_used}
-#'  \item{likelihoods_laplace}{likelihoods_laplace}
-#'  \item{likelihoods_by_fleet}{likelihoods_by_fleet}
-#'  \item{N_estimated_parameters}{N_estimated_parameters}
-#'  \item{table_of_phases}{table_of_phases}
-#'  \item{estimated_non_dev_parameters}{estimated_non_dev_parameters}
-#'  \item{log_det_hessian}{log_det_hessian}
-#'  \item{maximum_gradient_component}{maximum_gradient_component}
-#'  \item{parameters_with_highest_gradients}{parameters_with_highest_gradients}
-#'  \item{Length_Comp_Fit_Summary}{Length_Comp_Fit_Summary}
-#'  \item{Age_Comp_Fit_Summary}{Age_Comp_Fit_Summary}
-#'  \item{SBzero}{SBzero}
-#'  \item{current_depletion}{current_depletion}
-#'  \item{last_years_SPR}{last_years_SPR}
-#'  \item{SPRratioLabel}{SPRratioLabel}
-#'  \item{sigma_R_in}{sigma_R_in}
-#'  \item{sigma_R_info}{sigma_R_info}
-#'  \item{rmse_table}{rmse_table}
-#'  \item{logfile}{logfile}
-#'  \item{inputs}{inputs}
-#' }
-#'
-#' @source simulated with \pkg{ss3sim}
-#'
-#' @author R. Methot,
-#'
-"simple"
-
-
-#' Retrospective runs for simulated Simple Stock Synthesis model.
-#'
-#' Stock Synthesis output read by \code{\link[r4ss]{SS_output}()}
-#'
-#' @docType data
-#'
-#' @format Large list of 184 objects generated using \pkg{r4ss}
-#' \describe{
-#'  \item{Data_File}{Data_File}
-#'  \item{Control_File}{Control_File}
-#'  \item{definitions}{definitions}
-#'  \item{fleet_ID}{fleet_ID}
-#'  \item{fleet_type}{fleet_type}
-#'  \item{fleet_timing}{fleet_timing}
-#'  \item{fleet_area}{fleet_area}
-#'  \item{catch_units}{catch_units}
-#'  \item{catch_se}{catch_se}
-#'  \item{equ_catch_se}{equ_catch_se}
-#'  \item{survey_units}{survey_units}
-#'  \item{survey_error}{survey_error}
-#'  \item{IsFishFleet}{IsFishFleet}
-#'  \item{nfishfleets}{nfishfleets}
-#'  \item{nfleets}{nfleets}
-#'  \item{nsexes}{nsexes}
-#'  \item{ngpatterns}{ngpatterns}
-#'  \item{lbins}{lbins}
-#'  \item{Lbin_method}{Lbin_method}
-#'  \item{nlbins}{nlbins}
-#'  \item{lbinspop}{lbinspop}
-#'  \item{nlbinspop}{nlbinspop}
-#'  \item{sizebinlist}{sizebinlist}
-#'  \item{agebins}{agebins}
-#'  \item{nagebins}{nagebins}
-#'  \item{accuage}{accuage}
-#'  \item{nareas}{nareas}
-#'  \item{startyr}{startyr}
-#'  \item{endyr}{endyr}
-#'  \item{nseasons}{nseasons}
-#'  \item{seasfracs}{seasfracs}
-#'  \item{seasdurations}{seasdurations}
-#'  \item{N_sub_seasons}{N_sub_seasons}
-#'  \item{Spawn_month}{Spawn_month}
-#'  \item{Spawn_seas}{Spawn_seas}
-#'  \item{Spawn_timing_in_season}{Spawn_timing_in_season}
-#'  \item{Retro_year}{Retro_year}
-#'  \item{N_forecast_yrs}{N_forecast_yrs}
-#'  \item{Empirical_wt_at_age}{Empirical_wt_at_age}
-#'  \item{N_bio_patterns}{N_bio_patterns}
-#'  \item{N_platoons}{N_platoons}
-#'  \item{NatMort_option}{NatMort_option}
-#'  \item{GrowthModel_option}{GrowthModel_option}
-#'  \item{Maturity_option}{Maturity_option}
-#'  \item{Fecundity_option}{Fecundity_option}
-#'  \item{Start_from_par}{Start_from_par}
-#'  \item{Do_all_priors}{Do_all_priors}
-#'  \item{Use_softbound}{Use_softbound}
-#'  \item{N_nudata}{N_nudata}
-#'  \item{Max_phase}{Max_phase}
-#'  \item{Current_phase}{Current_phase}
-#'  \item{Jitter}{Jitter}
-#'  \item{ALK_tolerance}{ALK_tolerance}
-#'  \item{nforecastyears}{nforecastyears}
-#'  \item{morph_indexing}{morph_indexing}
-#'  \item{MGparmAdj}{MGparmAdj}
-#'  \item{forecast_selectivity}{forecast_selectivity}
-#'  \item{SelSizeAdj}{SelSizeAdj}
-#'  \item{SelAgeAdj}{SelAgeAdj}
-#'  \item{recruitment_dist}{recruitment_dist}
-#'  \item{recruit}{recruit}
-#'  \item{SPAWN_RECR_CURVE}{SPAWN_RECR_CURVE}
-#'  \item{breakpoints_for_bias_adjustment_ramp}{breakpoints_for_bias_adjustment_ramp}
-#'  \item{SpawnOutputUnits}{SpawnOutputUnits}
-#'  \item{biology}{biology}
-#'  \item{FecType}{FecType}
-#'  \item{FecPar1name}{FecPar1name}
-#'  \item{FecPar2name}{FecPar2name}
-#'  \item{FecPar1}{FecPar1}
-#'  \item{FecPar2}{FecPar2}
-#'  \item{M_type}{M_type}
-#'  \item{Natural_Mortality_Bmark}{Natural_Mortality_Bmark}
-#'  \item{Natural_Mortality_endyr}{Natural_Mortality_endyr}
-#'  \item{Growth_Parameters}{Growth_Parameters}
-#'  \item{growthCVtype}{growthCVtype}
-#'  \item{endgrowth}{endgrowth}
-#'  \item{wtatage_switch}{wtatage_switch}
-#'  \item{mean_body_wt}{mean_body_wt}
-#'  \item{growthseries}{growthseries}
-#'  \item{growthvaries}{growthvaries}
-#'  \item{sizeselex}{sizeselex}
-#'  \item{ageselex}{ageselex}
-#'  \item{F_method}{F_method}
-#'  \item{exploitation}{exploitation}
-#'  \item{catch}{catch}
-#'  \item{summary_age}{summary_age}
-#'  \item{timeseries}{timeseries}
-#'  \item{spawnseas}{spawnseas}
-#'  \item{mainmorphs}{mainmorphs}
-#'  \item{birthseas}{birthseas}
-#'  \item{depletion_method}{depletion_method}
-#'  \item{depletion_basis}{depletion_basis}
-#'  \item{discard}{discard}
-#'  \item{discard_type}{discard_type}
-#'  \item{DF_discard}{DF_discard}
-#'  \item{discard_spec}{discard_spec}
-#'  \item{mnwgt}{mnwgt}
-#'  \item{DF_mnwgt}{DF_mnwgt}
-#'  \item{sprseries}{sprseries}
-#'  \item{managementratiolabels}{managementratiolabels}
-#'  \item{F_report_basis}{F_report_basis}
-#'  \item{B_ratio_denominator}{B_ratio_denominator}
-#'  \item{sprtarg}{sprtarg}
-#'  \item{btarg}{btarg}
-#'  \item{minbthresh}{minbthresh}
-#'  \item{Kobe_warn}{Kobe_warn}
-#'  \item{Kobe_MSY_basis}{Kobe_MSY_basis}
-#'  \item{Kobe}{Kobe}
-#'  \item{index_variance_tuning_check}{index_variance_tuning_check}
-#'  \item{cpue}{cpue}
-#'  \item{natage}{natage}
-#'  \item{natage_annual_1_no_fishery}{natage_annual_1_no_fishery}
-#'  \item{natage_annual_2_with_fishery}{natage_annual_2_with_fishery}
-#'  \item{batage}{batage}
-#'  \item{natlen}{natlen}
-#'  \item{batlen}{batlen}
-#'  \item{fatage}{fatage}
-#'  \item{discard_at_age}{discard_at_age}
-#'  \item{catage}{catage}
-#'  \item{movement}{movement}
-#'  \item{ALK}{ALK}
-#'  \item{N_ageerror_defs}{N_ageerror_defs}
-#'  \item{equil_yield}{equil_yield}
-#'  \item{Z_at_age}{Z_at_age}
-#'  \item{M_at_age}{M_at_age}
-#'  \item{Dynamic_Bzero}{Dynamic_Bzero}
-#'  \item{comp_data_exists}{comp_data_exists}
-#'  \item{lendbase}{lendbase}
-#'  \item{sizedbase}{sizedbase}
-#'  \item{agedbase}{agedbase}
-#'  \item{condbase}{condbase}
-#'  \item{ghostagedbase}{ghostagedbase}
-#'  \item{ghostcondbase}{ghostcondbase}
-#'  \item{ghostlendbase}{ghostlendbase}
-#'  \item{ladbase}{ladbase}
-#'  \item{wadbase}{wadbase}
-#'  \item{tagdbase1}{tagdbase1}
-#'  \item{tagdbase2}{tagdbase2}
-#'  \item{len_comp_fit_table}{len_comp_fit_table}
-#'  \item{size_comp_fit_table}{size_comp_fit_table}
-#'  \item{derived_quants}{derived_quants}
-#'  \item{parameters}{parameters}
-#'  \item{FleetNames}{FleetNames}
-#'  \item{repfiletime}{repfiletime}
-#'  \item{SRRtype}{SRRtype}
-#'  \item{Pstar_sigma}{Pstar_sigma}
-#'  \item{OFL_sigma}{OFL_sigma}
-#'  \item{CoVar}{CoVar}
-#'  \item{highcor}{highcor}
-#'  \item{lowcor}{lowcor}
-#'  \item{corstats}{corstats}
-#'  \item{stdtable}{stdtable}
-#'  \item{recruitpars}{recruitpars}
-#'  \item{RecrDistpars}{RecrDistpars}
-#'  \item{wtatage}{wtatage}
-#'  \item{jitter_info}{jitter_info}
-#'  \item{SS_version}{SS_version}
-#'  \item{SS_versionshort}{SS_versionshort}
-#'  \item{SS_versionNumeric}{SS_versionNumeric}
-#'  \item{StartTime}{StartTime}
-#'  \item{RunTime}{RunTime}
-#'  \item{Files_used}{Files_used}
-#'  \item{Nwarnings}{Nwarnings}
-#'  \item{warnings}{warnings}
-#'  \item{likelihoods_used}{likelihoods_used}
-#'  \item{likelihoods_laplace}{likelihoods_laplace}
-#'  \item{likelihoods_by_fleet}{likelihoods_by_fleet}
-#'  \item{N_estimated_parameters}{N_estimated_parameters}
-#'  \item{table_of_phases}{table_of_phases}
-#'  \item{estimated_non_dev_parameters}{estimated_non_dev_parameters}
-#'  \item{log_det_hessian}{log_det_hessian}
-#'  \item{maximum_gradient_component}{maximum_gradient_component}
-#'  \item{parameters_with_highest_gradients}{parameters_with_highest_gradients}
-#'  \item{Length_Comp_Fit_Summary}{Length_Comp_Fit_Summary}
-#'  \item{Age_Comp_Fit_Summary}{Age_Comp_Fit_Summary}
-#'  \item{SBzero}{SBzero}
-#'  \item{current_depletion}{current_depletion}
-#'  \item{last_years_SPR}{last_years_SPR}
-#'  \item{SPRratioLabel}{SPRratioLabel}
-#'  \item{sigma_R_in}{sigma_R_in}
-#'  \item{sigma_R_info}{sigma_R_info}
-#'  \item{rmse_table}{rmse_table}
-#'  \item{logfile}{logfile}
-#'  \item{inputs}{inputs}
-#' }
-#'
-#' @source simulated with \pkg{ss3sim}
-#'
-#' @author R. Methot
-#'
-"retroSimple"
-
-
-#' MCMC output for simulated Simple Stock Synthesis model.
-#'
-#' MCMC output read by \code{\link[r4ss]{SSgetMCMC}()}
-#'
-#' @docType data
-#'
-#' @format Large dataframe of MCMC parameter estimates with nrow = number of values and ncol = number of parameters
-#' \describe{
-#'  \item{mcmcSimple}{mcmcSimple}
-#' }
-#'
-#' @source MCMC evaluated with Stock Synthesis
-#'
-#' @author R. Methot,
-#'
-"mcmcSimple"
diff --git a/man/mcmcSimple.Rd b/man/mcmcSimple.Rd
deleted file mode 100644
index cbc3bdb..0000000
--- a/man/mcmcSimple.Rd
+++ /dev/null
@@ -1,25 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data.R
-\docType{data}
-\name{mcmcSimple}
-\alias{mcmcSimple}
-\title{MCMC output for simulated Simple Stock Synthesis model.}
-\format{
-Large dataframe of MCMC parameter estimates with nrow = number of values and ncol = number of parameters
-\describe{
-\item{mcmcSimple}{mcmcSimple}
-}
-}
-\source{
-MCMC evaluated with Stock Synthesis
-}
-\usage{
-mcmcSimple
-}
-\description{
-MCMC output read by \code{\link[r4ss]{SSgetMCMC}()}
-}
-\author{
-R. Methot,
-}
-\keyword{datasets}
diff --git a/man/retroSimple.Rd b/man/retroSimple.Rd
deleted file mode 100644
index 976a644..0000000
--- a/man/retroSimple.Rd
+++ /dev/null
@@ -1,208 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data.R
-\docType{data}
-\name{retroSimple}
-\alias{retroSimple}
-\title{Retrospective runs for simulated Simple Stock Synthesis model.}
-\format{
-Large list of 184 objects generated using \pkg{r4ss}
-\describe{
-\item{Data_File}{Data_File}
-\item{Control_File}{Control_File}
-\item{definitions}{definitions}
-\item{fleet_ID}{fleet_ID}
-\item{fleet_type}{fleet_type}
-\item{fleet_timing}{fleet_timing}
-\item{fleet_area}{fleet_area}
-\item{catch_units}{catch_units}
-\item{catch_se}{catch_se}
-\item{equ_catch_se}{equ_catch_se}
-\item{survey_units}{survey_units}
-\item{survey_error}{survey_error}
-\item{IsFishFleet}{IsFishFleet}
-\item{nfishfleets}{nfishfleets}
-\item{nfleets}{nfleets}
-\item{nsexes}{nsexes}
-\item{ngpatterns}{ngpatterns}
-\item{lbins}{lbins}
-\item{Lbin_method}{Lbin_method}
-\item{nlbins}{nlbins}
-\item{lbinspop}{lbinspop}
-\item{nlbinspop}{nlbinspop}
-\item{sizebinlist}{sizebinlist}
-\item{agebins}{agebins}
-\item{nagebins}{nagebins}
-\item{accuage}{accuage}
-\item{nareas}{nareas}
-\item{startyr}{startyr}
-\item{endyr}{endyr}
-\item{nseasons}{nseasons}
-\item{seasfracs}{seasfracs}
-\item{seasdurations}{seasdurations}
-\item{N_sub_seasons}{N_sub_seasons}
-\item{Spawn_month}{Spawn_month}
-\item{Spawn_seas}{Spawn_seas}
-\item{Spawn_timing_in_season}{Spawn_timing_in_season}
-\item{Retro_year}{Retro_year}
-\item{N_forecast_yrs}{N_forecast_yrs}
-\item{Empirical_wt_at_age}{Empirical_wt_at_age}
-\item{N_bio_patterns}{N_bio_patterns}
-\item{N_platoons}{N_platoons}
-\item{NatMort_option}{NatMort_option}
-\item{GrowthModel_option}{GrowthModel_option}
-\item{Maturity_option}{Maturity_option}
-\item{Fecundity_option}{Fecundity_option}
-\item{Start_from_par}{Start_from_par}
-\item{Do_all_priors}{Do_all_priors}
-\item{Use_softbound}{Use_softbound}
-\item{N_nudata}{N_nudata}
-\item{Max_phase}{Max_phase}
-\item{Current_phase}{Current_phase}
-\item{Jitter}{Jitter}
-\item{ALK_tolerance}{ALK_tolerance}
-\item{nforecastyears}{nforecastyears}
-\item{morph_indexing}{morph_indexing}
-\item{MGparmAdj}{MGparmAdj}
-\item{forecast_selectivity}{forecast_selectivity}
-\item{SelSizeAdj}{SelSizeAdj}
-\item{SelAgeAdj}{SelAgeAdj}
-\item{recruitment_dist}{recruitment_dist}
-\item{recruit}{recruit}
-\item{SPAWN_RECR_CURVE}{SPAWN_RECR_CURVE}
-\item{breakpoints_for_bias_adjustment_ramp}{breakpoints_for_bias_adjustment_ramp}
-\item{SpawnOutputUnits}{SpawnOutputUnits}
-\item{biology}{biology}
-\item{FecType}{FecType}
-\item{FecPar1name}{FecPar1name}
-\item{FecPar2name}{FecPar2name}
-\item{FecPar1}{FecPar1}
-\item{FecPar2}{FecPar2}
-\item{M_type}{M_type}
-\item{Natural_Mortality_Bmark}{Natural_Mortality_Bmark}
-\item{Natural_Mortality_endyr}{Natural_Mortality_endyr}
-\item{Growth_Parameters}{Growth_Parameters}
-\item{growthCVtype}{growthCVtype}
-\item{endgrowth}{endgrowth}
-\item{wtatage_switch}{wtatage_switch}
-\item{mean_body_wt}{mean_body_wt}
-\item{growthseries}{growthseries}
-\item{growthvaries}{growthvaries}
-\item{sizeselex}{sizeselex}
-\item{ageselex}{ageselex}
-\item{F_method}{F_method}
-\item{exploitation}{exploitation}
-\item{catch}{catch}
-\item{summary_age}{summary_age}
-\item{timeseries}{timeseries}
-\item{spawnseas}{spawnseas}
-\item{mainmorphs}{mainmorphs}
-\item{birthseas}{birthseas}
-\item{depletion_method}{depletion_method}
-\item{depletion_basis}{depletion_basis}
-\item{discard}{discard}
-\item{discard_type}{discard_type}
-\item{DF_discard}{DF_discard}
-\item{discard_spec}{discard_spec}
-\item{mnwgt}{mnwgt}
-\item{DF_mnwgt}{DF_mnwgt}
-\item{sprseries}{sprseries}
-\item{managementratiolabels}{managementratiolabels}
-\item{F_report_basis}{F_report_basis}
-\item{B_ratio_denominator}{B_ratio_denominator}
-\item{sprtarg}{sprtarg}
-\item{btarg}{btarg}
-\item{minbthresh}{minbthresh}
-\item{Kobe_warn}{Kobe_warn}
-\item{Kobe_MSY_basis}{Kobe_MSY_basis}
-\item{Kobe}{Kobe}
-\item{index_variance_tuning_check}{index_variance_tuning_check}
-\item{cpue}{cpue}
-\item{natage}{natage}
-\item{natage_annual_1_no_fishery}{natage_annual_1_no_fishery}
-\item{natage_annual_2_with_fishery}{natage_annual_2_with_fishery}
-\item{batage}{batage}
-\item{natlen}{natlen}
-\item{batlen}{batlen}
-\item{fatage}{fatage}
-\item{discard_at_age}{discard_at_age}
-\item{catage}{catage}
-\item{movement}{movement}
-\item{ALK}{ALK}
-\item{N_ageerror_defs}{N_ageerror_defs}
-\item{equil_yield}{equil_yield}
-\item{Z_at_age}{Z_at_age}
-\item{M_at_age}{M_at_age}
-\item{Dynamic_Bzero}{Dynamic_Bzero}
-\item{comp_data_exists}{comp_data_exists}
-\item{lendbase}{lendbase}
-\item{sizedbase}{sizedbase}
-\item{agedbase}{agedbase}
-\item{condbase}{condbase}
-\item{ghostagedbase}{ghostagedbase}
-\item{ghostcondbase}{ghostcondbase}
-\item{ghostlendbase}{ghostlendbase}
-\item{ladbase}{ladbase}
-\item{wadbase}{wadbase}
-\item{tagdbase1}{tagdbase1}
-\item{tagdbase2}{tagdbase2}
-\item{len_comp_fit_table}{len_comp_fit_table}
-\item{size_comp_fit_table}{size_comp_fit_table}
-\item{derived_quants}{derived_quants}
-\item{parameters}{parameters}
-\item{FleetNames}{FleetNames}
-\item{repfiletime}{repfiletime}
-\item{SRRtype}{SRRtype}
-\item{Pstar_sigma}{Pstar_sigma}
-\item{OFL_sigma}{OFL_sigma}
-\item{CoVar}{CoVar}
-\item{highcor}{highcor}
-\item{lowcor}{lowcor}
-\item{corstats}{corstats}
-\item{stdtable}{stdtable}
-\item{recruitpars}{recruitpars}
-\item{RecrDistpars}{RecrDistpars}
-\item{wtatage}{wtatage}
-\item{jitter_info}{jitter_info}
-\item{SS_version}{SS_version}
-\item{SS_versionshort}{SS_versionshort}
-\item{SS_versionNumeric}{SS_versionNumeric}
-\item{StartTime}{StartTime}
-\item{RunTime}{RunTime}
-\item{Files_used}{Files_used}
-\item{Nwarnings}{Nwarnings}
-\item{warnings}{warnings}
-\item{likelihoods_used}{likelihoods_used}
-\item{likelihoods_laplace}{likelihoods_laplace}
-\item{likelihoods_by_fleet}{likelihoods_by_fleet}
-\item{N_estimated_parameters}{N_estimated_parameters}
-\item{table_of_phases}{table_of_phases}
-\item{estimated_non_dev_parameters}{estimated_non_dev_parameters}
-\item{log_det_hessian}{log_det_hessian}
-\item{maximum_gradient_component}{maximum_gradient_component}
-\item{parameters_with_highest_gradients}{parameters_with_highest_gradients}
-\item{Length_Comp_Fit_Summary}{Length_Comp_Fit_Summary}
-\item{Age_Comp_Fit_Summary}{Age_Comp_Fit_Summary}
-\item{SBzero}{SBzero}
-\item{current_depletion}{current_depletion}
-\item{last_years_SPR}{last_years_SPR}
-\item{SPRratioLabel}{SPRratioLabel}
-\item{sigma_R_in}{sigma_R_in}
-\item{sigma_R_info}{sigma_R_info}
-\item{rmse_table}{rmse_table}
-\item{logfile}{logfile}
-\item{inputs}{inputs}
-}
-}
-\source{
-simulated with \pkg{ss3sim}
-}
-\usage{
-retroSimple
-}
-\description{
-Stock Synthesis output read by \code{\link[r4ss]{SS_output}()}
-}
-\author{
-R. Methot
-}
-\keyword{datasets}
diff --git a/man/simple.Rd b/man/simple.Rd
deleted file mode 100644
index 8a67c68..0000000
--- a/man/simple.Rd
+++ /dev/null
@@ -1,208 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/data.R
-\docType{data}
-\name{simple}
-\alias{simple}
-\title{A simulated Simple Stock Synthesis model for a "cod-like" stock.}
-\format{
-Large list of 184 objects generated using \pkg{r4ss}
-\describe{
-\item{Data_File}{Data_File}
-\item{Control_File}{Control_File}
-\item{definitions}{definitions}
-\item{fleet_ID}{fleet_ID}
-\item{fleet_type}{fleet_type}
-\item{fleet_timing}{fleet_timing}
-\item{fleet_area}{fleet_area}
-\item{catch_units}{catch_units}
-\item{catch_se}{catch_se}
-\item{equ_catch_se}{equ_catch_se}
-\item{survey_units}{survey_units}
-\item{survey_error}{survey_error}
-\item{IsFishFleet}{IsFishFleet}
-\item{nfishfleets}{nfishfleets}
-\item{nfleets}{nfleets}
-\item{nsexes}{nsexes}
-\item{ngpatterns}{ngpatterns}
-\item{lbins}{lbins}
-\item{Lbin_method}{Lbin_method}
-\item{nlbins}{nlbins}
-\item{lbinspop}{lbinspop}
-\item{nlbinspop}{nlbinspop}
-\item{sizebinlist}{sizebinlist}
-\item{agebins}{agebins}
-\item{nagebins}{nagebins}
-\item{accuage}{accuage}
-\item{nareas}{nareas}
-\item{startyr}{startyr}
-\item{endyr}{endyr}
-\item{nseasons}{nseasons}
-\item{seasfracs}{seasfracs}
-\item{seasdurations}{seasdurations}
-\item{N_sub_seasons}{N_sub_seasons}
-\item{Spawn_month}{Spawn_month}
-\item{Spawn_seas}{Spawn_seas}
-\item{Spawn_timing_in_season}{Spawn_timing_in_season}
-\item{Retro_year}{Retro_year}
-\item{N_forecast_yrs}{N_forecast_yrs}
-\item{Empirical_wt_at_age}{Empirical_wt_at_age}
-\item{N_bio_patterns}{N_bio_patterns}
-\item{N_platoons}{N_platoons}
-\item{NatMort_option}{NatMort_option}
-\item{GrowthModel_option}{GrowthModel_option}
-\item{Maturity_option}{Maturity_option}
-\item{Fecundity_option}{Fecundity_option}
-\item{Start_from_par}{Start_from_par}
-\item{Do_all_priors}{Do_all_priors}
-\item{Use_softbound}{Use_softbound}
-\item{N_nudata}{N_nudata}
-\item{Max_phase}{Max_phase}
-\item{Current_phase}{Current_phase}
-\item{Jitter}{Jitter}
-\item{ALK_tolerance}{ALK_tolerance}
-\item{nforecastyears}{nforecastyears}
-\item{morph_indexing}{morph_indexing}
-\item{MGparmAdj}{MGparmAdj}
-\item{forecast_selectivity}{forecast_selectivity}
-\item{SelSizeAdj}{SelSizeAdj}
-\item{SelAgeAdj}{SelAgeAdj}
-\item{recruitment_dist}{recruitment_dist}
-\item{recruit}{recruit}
-\item{SPAWN_RECR_CURVE}{SPAWN_RECR_CURVE}
-\item{breakpoints_for_bias_adjustment_ramp}{breakpoints_for_bias_adjustment_ramp}
-\item{SpawnOutputUnits}{SpawnOutputUnits}
-\item{biology}{biology}
-\item{FecType}{FecType}
-\item{FecPar1name}{FecPar1name}
-\item{FecPar2name}{FecPar2name}
-\item{FecPar1}{FecPar1}
-\item{FecPar2}{FecPar2}
-\item{M_type}{M_type}
-\item{Natural_Mortality_Bmark}{Natural_Mortality_Bmark}
-\item{Natural_Mortality_endyr}{Natural_Mortality_endyr}
-\item{Growth_Parameters}{Growth_Parameters}
-\item{growthCVtype}{growthCVtype}
-\item{endgrowth}{endgrowth}
-\item{wtatage_switch}{wtatage_switch}
-\item{mean_body_wt}{mean_body_wt}
-\item{growthseries}{growthseries}
-\item{growthvaries}{growthvaries}
-\item{sizeselex}{sizeselex}
-\item{ageselex}{ageselex}
-\item{F_method}{F_method}
-\item{exploitation}{exploitation}
-\item{catch}{catch}
-\item{summary_age}{summary_age}
-\item{timeseries}{timeseries}
-\item{spawnseas}{spawnseas}
-\item{mainmorphs}{mainmorphs}
-\item{birthseas}{birthseas}
-\item{depletion_method}{depletion_method}
-\item{depletion_basis}{depletion_basis}
-\item{discard}{discard}
-\item{discard_type}{discard_type}
-\item{DF_discard}{DF_discard}
-\item{discard_spec}{discard_spec}
-\item{mnwgt}{mnwgt}
-\item{DF_mnwgt}{DF_mnwgt}
-\item{sprseries}{sprseries}
-\item{managementratiolabels}{managementratiolabels}
-\item{F_report_basis}{F_report_basis}
-\item{B_ratio_denominator}{B_ratio_denominator}
-\item{sprtarg}{sprtarg}
-\item{btarg}{btarg}
-\item{minbthresh}{minbthresh}
-\item{Kobe_warn}{Kobe_warn}
-\item{Kobe_MSY_basis}{Kobe_MSY_basis}
-\item{Kobe}{Kobe}
-\item{index_variance_tuning_check}{index_variance_tuning_check}
-\item{cpue}{cpue}
-\item{natage}{natage}
-\item{natage_annual_1_no_fishery}{natage_annual_1_no_fishery}
-\item{natage_annual_2_with_fishery}{natage_annual_2_with_fishery}
-\item{batage}{batage}
-\item{natlen}{natlen}
-\item{batlen}{batlen}
-\item{fatage}{fatage}
-\item{discard_at_age}{discard_at_age}
-\item{catage}{catage}
-\item{movement}{movement}
-\item{ALK}{ALK}
-\item{N_ageerror_defs}{N_ageerror_defs}
-\item{equil_yield}{equil_yield}
-\item{Z_at_age}{Z_at_age}
-\item{M_at_age}{M_at_age}
-\item{Dynamic_Bzero}{Dynamic_Bzero}
-\item{comp_data_exists}{comp_data_exists}
-\item{lendbase}{lendbase}
-\item{sizedbase}{sizedbase}
-\item{agedbase}{agedbase}
-\item{condbase}{condbase}
-\item{ghostagedbase}{ghostagedbase}
-\item{ghostcondbase}{ghostcondbase}
-\item{ghostlendbase}{ghostlendbase}
-\item{ladbase}{ladbase}
-\item{wadbase}{wadbase}
-\item{tagdbase1}{tagdbase1}
-\item{tagdbase2}{tagdbase2}
-\item{len_comp_fit_table}{len_comp_fit_table}
-\item{size_comp_fit_table}{size_comp_fit_table}
-\item{derived_quants}{derived_quants}
-\item{parameters}{parameters}
-\item{FleetNames}{FleetNames}
-\item{repfiletime}{repfiletime}
-\item{SRRtype}{SRRtype}
-\item{Pstar_sigma}{Pstar_sigma}
-\item{OFL_sigma}{OFL_sigma}
-\item{CoVar}{CoVar}
-\item{highcor}{highcor}
-\item{lowcor}{lowcor}
-\item{corstats}{corstats}
-\item{stdtable}{stdtable}
-\item{recruitpars}{recruitpars}
-\item{RecrDistpars}{RecrDistpars}
-\item{wtatage}{wtatage}
-\item{jitter_info}{jitter_info}
-\item{SS_version}{SS_version}
-\item{SS_versionshort}{SS_versionshort}
-\item{SS_versionNumeric}{SS_versionNumeric}
-\item{StartTime}{StartTime}
-\item{RunTime}{RunTime}
-\item{Files_used}{Files_used}
-\item{Nwarnings}{Nwarnings}
-\item{warnings}{warnings}
-\item{likelihoods_used}{likelihoods_used}
-\item{likelihoods_laplace}{likelihoods_laplace}
-\item{likelihoods_by_fleet}{likelihoods_by_fleet}
-\item{N_estimated_parameters}{N_estimated_parameters}
-\item{table_of_phases}{table_of_phases}
-\item{estimated_non_dev_parameters}{estimated_non_dev_parameters}
-\item{log_det_hessian}{log_det_hessian}
-\item{maximum_gradient_component}{maximum_gradient_component}
-\item{parameters_with_highest_gradients}{parameters_with_highest_gradients}
-\item{Length_Comp_Fit_Summary}{Length_Comp_Fit_Summary}
-\item{Age_Comp_Fit_Summary}{Age_Comp_Fit_Summary}
-\item{SBzero}{SBzero}
-\item{current_depletion}{current_depletion}
-\item{last_years_SPR}{last_years_SPR}
-\item{SPRratioLabel}{SPRratioLabel}
-\item{sigma_R_in}{sigma_R_in}
-\item{sigma_R_info}{sigma_R_info}
-\item{rmse_table}{rmse_table}
-\item{logfile}{logfile}
-\item{inputs}{inputs}
-}
-}
-\source{
-simulated with \pkg{ss3sim}
-}
-\usage{
-simple
-}
-\description{
-Stock Synthesis output read by \code{\link[r4ss]{SS_output}()}
-}
-\author{
-R. Methot,
-}
-\keyword{datasets}
diff --git a/tests/testthat/test-HCxval.R b/tests/testthat/test-HCxval.R
index c983af2..cd15493 100644
--- a/tests/testthat/test-HCxval.R
+++ b/tests/testthat/test-HCxval.R
@@ -1,5 +1,12 @@
 ## Test script for hindcast cross validation and MASE
 
+  retroModels <- r4ss::SSgetoutput(
+    dirvec = file.path(
+      run_tmp, "retrospectives",
+      paste0("retro", 0:-3)
+    )
+  )
+  retrosum.simple <- r4ss::SSsummarize(retroModels)
 path <- file.path(tempdir(), "test_runs")
 dir.create(path, showWarnings = FALSE)