diff --git a/vignettes/cepo.Rmd b/vignettes/cepo.Rmd index 52c2b2b..935ae07 100644 --- a/vignettes/cepo.Rmd +++ b/vignettes/cepo.Rmd @@ -291,7 +291,7 @@ hallmarkList <- getGeneSets(species = "Homo sapiens", library = "H") fgseaRes <- fgsea(pathways = hallmarkList, - stats = sort(ds_res_batches$average$stats[,"beta"]), + stats = sort(as.data.frame(ds_res_batches$average$stats)$beta), minSize = 15, maxSize = 500)