diff --git a/workflow/envs/biopython.post-deploy.sh b/workflow/envs/biopython.post-deploy.sh index dbd7a61..0213c17 100644 --- a/workflow/envs/biopython.post-deploy.sh +++ b/workflow/envs/biopython.post-deploy.sh @@ -2,4 +2,4 @@ # Install gb2seq -pip install gb2seq \ No newline at end of file +pip install gb2seq==0.2.20 \ No newline at end of file diff --git a/workflow/envs/quarto_render.yaml b/workflow/envs/quarto_render.yaml index 0353bb1..117fa74 100644 --- a/workflow/envs/quarto_render.yaml +++ b/workflow/envs/quarto_render.yaml @@ -2,12 +2,11 @@ channels: - conda-forge - bioconda dependencies: - - r-base + - r-base==4.3.1 - r-gt==0.9.0 - quarto==1.3.450 - r-jsonlite==1.8.5 - - r-dplyr==1.1.2 - - r-tidyr==1.3.0 + - r-tidyverse==2.0.0 - r-quarto==1.2 - r-heatmaply==1.4.2 - r-readr==2.1.4 diff --git a/workflow/envs/renv.yaml b/workflow/envs/renv.yaml index 31b376f..4dbbe52 100644 --- a/workflow/envs/renv.yaml +++ b/workflow/envs/renv.yaml @@ -5,13 +5,11 @@ dependencies: - r-base=4.1.3 - r-tidyverse==2.0.0 - r-ggrepel==0.9.3 - - r-quarto==1.2 - r-stringi==1.7.12 - r-ggpubr==0.6.0 - bioconductor-ggtree==3.2.0 - r-ape==5.7 - r-adephylo==1.1_13 - - r-ggrepel==0.9.3 - r-pegas==1.2 - r-data.table==1.14.8 - r-future.apply==1.11.0