From 42f76ec106c1f287f50cac721eba29d6b905ee2f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Miguel=20=C3=81lvarez=20Herrera?=
 <m.alvarez.herrera@csic.es>
Date: Tue, 16 Apr 2024 17:17:01 +0200
Subject: [PATCH] Show empty spike empty VCF

---
 workflow/scripts/report/NV_description.R | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/workflow/scripts/report/NV_description.R b/workflow/scripts/report/NV_description.R
index bfb6e0e..eae4c7e 100644
--- a/workflow/scripts/report/NV_description.R
+++ b/workflow/scripts/report/NV_description.R
@@ -316,7 +316,9 @@ window_plot_spike <- window %>%
 
 if (nrow(vcf_spike) == 0) {
   log_warn("Spike VCF has no rows")
+  print(vcf_spike)
   vcf_spike <- empty_vcf
+  print(vcf_spike)
 }
 
 variants_spike <- vcf_spike %>%