From 44b19ee28f8344722c247a45283f6b880dfe42d6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Miguel=20=C3=81lvarez=20Herrera?= Date: Thu, 21 Mar 2024 13:28:35 +0100 Subject: [PATCH] Fix GitHub action dependency error pulp 2.8 broke Snakemake 7.32, see snakemake/snakemake#2607 --- .github/workflows/install.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/install.yml b/.github/workflows/install.yml index 0ac6685..31a7162 100644 --- a/.github/workflows/install.yml +++ b/.github/workflows/install.yml @@ -34,7 +34,7 @@ jobs: activate-environment: "" - name: Install Snakemake 7.32 run: | - pip install snakemake==7.32.4 + pip install 'snakemake==7.32.4' 'pulp<2.8' - name: Create environments run: | snakemake --snakefile workflow/Snakefile --directory .test --configfile config/config.yaml .test/targets.yaml --conda-create-envs-only --use-conda -c1 @@ -55,7 +55,7 @@ jobs: activate-environment: "" - name: Install Snakemake 7.32 run: | - pip install snakemake==7.32.4 + pip install 'snakemake==7.32.4' 'pulp<2.8' - name: Dry run run: | snakemake --snakefile workflow/Snakefile --directory .test --configfile config/config.yaml .test/targets.yaml --dry-run