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cmsearch_RF01704_HP.txt
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# cmsearch :: search CM(s) against a sequence database
# INFERNAL 1.1.2 (July 2016)
# Copyright (C) 2016 Howard Hughes Medical Institute.
# Freely distributed under a BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query CM file: Rfam/RF01704_from_HP.cm
# target sequence database: 60_cyanos.fasta
# show alignments in output: no
# sequence reporting threshold: E-value <= 0.0001
# number of worker threads: 4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Downstream-peptide [CLEN=60]
Accession: RF01704
Hit scores:
rank E-value score bias sequence start end mdl trunc gc description
---- --------- ------ ----- -------------------------------------------------------------------------------- ------- ------- --- ----- ---- -----------
(1) ! 1.4e-13 71.0 0.0 NC_005042.1_Prochlorococcus_marinus_subsp._marinus_str._CCMP1375_complete_genome 924002 923944 - cm no 0.49 -
(2) ! 3.3e-13 69.6 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 1025849 1025788 - cm no 0.65 -
(3) ! 1.7e-12 67.0 0.0 NC_009482.1_Synechococcus_sp._RCC307_genomic_DNA_sequence 1727489 1727429 - cm no 0.66 -
(4) ! 1.7e-12 66.9 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 202049 201986 - cm no 0.59 -
(5) ! 2.8e-12 66.1 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 1382950 1383011 + cm no 0.65 -
(6) ! 3e-12 66.0 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 397281 397219 - cm no 0.48 -
(7) ! 3.5e-12 65.8 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 532787 532847 + cm no 0.59 -
(8) ! 5.5e-12 65.0 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 379176 379235 + cm no 0.60 -
(9) ! 8.7e-12 64.3 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 118916 118978 + cm no 0.68 -
(10) ! 1.1e-11 63.9 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 1854939 1854998 + cm no 0.60 -
(11) ! 1.1e-11 63.8 0.0 NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome 634086 634025 - cm no 0.47 -
(12) ! 1.1e-11 63.8 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 646690 646629 - cm no 0.47 -
(13) ! 1.3e-11 63.6 0.0 NZ_CP011941.1_Synechococcus_sp._WH_8020_genome 1175470 1175410 - cm no 0.61 -
(14) ! 1.3e-11 63.6 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 2439513 2439574 + cm no 0.61 -
(15) ! 1.4e-11 63.4 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 1035098 1035036 - cm no 0.46 -
(16) ! 1.9e-11 63.0 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 382308 382246 - cm no 0.49 -
(17) ! 2.1e-11 62.8 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 1536467 1536524 + cm no 0.48 -
(18) ! 2.4e-11 62.6 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 1573052 1573109 + cm no 0.48 -
(19) ! 2.6e-11 62.5 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 2354202 2354266 + cm no 0.65 -
(20) ! 2.7e-11 62.4 0.0 NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome 407110 407052 - cm no 0.56 -
(21) ! 2.9e-11 62.2 0.0 NC_007513.1_Synechococcus_sp._CC9902_complete_genome 1411351 1411410 + cm no 0.58 -
(22) ! 3.2e-11 62.1 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 398928 398871 - cm no 0.55 -
(23) ! 4e-11 61.8 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 1128117 1128176 + cm no 0.62 -
(24) ! 5.2e-11 61.3 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 1087010 1086948 - cm no 0.48 -
(25) ! 8e-11 60.6 0.0 NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome 627956 627894 - cm no 0.46 -
(26) ! 1.1e-10 60.0 0.0 NC_007513.1_Synechococcus_sp._CC9902_complete_genome 1170507 1170566 + cm no 0.62 -
(27) ! 1.2e-10 59.9 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 376374 376314 - cm no 0.66 -
(28) ! 1.6e-10 59.4 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 952450 952391 - cm no 0.58 -
(29) ! 1.7e-10 59.3 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 518912 518973 + cm no 0.58 -
(30) ! 2.2e-10 58.9 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 1932912 1932853 - cm no 0.67 -
(31) ! 2.4e-10 58.8 0.0 NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome 395850 395793 - cm no 0.53 -
(32) ! 2.9e-10 58.5 0.0 NC_005042.1_Prochlorococcus_marinus_subsp._marinus_str._CCMP1375_complete_genome 398283 398223 - cm no 0.56 -
(33) ! 3.3e-10 58.3 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 639915 639976 + cm no 0.69 -
(34) ! 4.7e-10 57.7 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 1078856 1078797 - cm no 0.50 -
(35) ! 4.7e-10 57.7 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 1303480 1303539 + cm no 0.50 -
(36) ! 9.8e-10 56.5 0.0 NC_007513.1_Synechococcus_sp._CC9902_complete_genome 2177551 2177613 + cm no 0.63 -
(37) ! 1.5e-09 55.8 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 1376352 1376413 + cm no 0.66 -
(38) ! 1.5e-09 55.7 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 738974 739032 + cm no 0.63 -
(39) ! 3.4e-09 54.4 0.0 NZ_CP011941.1_Synechococcus_sp._WH_8020_genome 543202 543143 - cm no 0.62 -
(40) ! 3.5e-09 54.4 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 1534389 1534332 - cm no 0.59 -
(41) ! 6e-09 53.5 0.0 NZ_CP011941.1_Synechococcus_sp._WH_8020_genome 193687 193751 + cm no 0.57 -
(42) ! 1.9e-08 51.6 0.0 NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome 1365468 1365406 - cm no 0.52 -
(43) ! 1.9e-08 51.6 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 1440590 1440528 - cm no 0.52 -
(44) ! 6.1e-08 49.6 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 1344747 1344807 + cm no 0.57 -
(45) ! 7.4e-08 49.3 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 1444215 1444155 - cm no 0.54 -
(46) ! 1.1e-07 48.7 0.0 NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome 350508 350446 - cm no 0.52 -
(47) ! 1.1e-07 48.6 0.0 NC_009482.1_Synechococcus_sp._RCC307_genomic_DNA_sequence 1340859 1340915 + cm no 0.58 -
(48) ! 1.7e-07 48.0 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 213786 213725 - cm no 0.73 -
(49) ! 2.7e-07 47.2 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 1478715 1478655 - cm no 0.56 -
(50) ! 2.9e-07 47.1 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 2424541 2424486 - cm no 0.61 -
(51) ! 4.4e-07 46.4 0.0 NC_007513.1_Synechococcus_sp._CC9902_complete_genome 973366 973307 - cm no 0.62 -
(52) ! 5.2e-07 46.1 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 1116138 1116076 - cm no 0.43 -
(53) ! 5.7e-07 46.0 0.0 NZ_CP006270.1_Synechococcus_sp._KORDI-49_complete_genome 641757 641698 - cm no 0.62 -
(54) ! 6.2e-07 45.8 0.0 NC_008816.1_Prochlorococcus_marinus_str._AS9601_complete_genome 1075404 1075342 - cm no 0.43 -
(55) ! 6.8e-07 45.7 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 1019126 1019068 - cm no 0.51 -
(56) ! 6.8e-07 45.7 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 1071068 1071010 - cm no 0.51 -
(57) ! 1.1e-06 44.9 0.0 NZ_CP007753.1_Prochlorococcus_sp._MIT_0604_complete_genome 1684556 1684617 + cm no 0.37 -
(58) ! 1.4e-06 44.5 0.0 NC_005070.1_Synechococcus_sp._WH_8102_complete_genome 2311575 2311634 + cm no 0.63 -
(59) ! 1.4e-06 44.4 0.1 NC_009482.1_Synechococcus_sp._RCC307_genomic_DNA_sequence 1019340 1019397 + cm no 0.74 -
(60) ! 3.2e-06 43.1 0.0 NC_007516.1_Synechococcus_sp._CC9605_complete_genome 1391085 1391144 + cm no 0.65 -
(61) ! 4.3e-06 42.6 0.0 NC_007513.1_Synechococcus_sp._CC9902_complete_genome 995827 995767 - cm no 0.61 -
(62) ! 4.6e-06 42.5 0.0 NC_009481.1_Synechococcus_WH7803_complete_genome_sequence 901002 900948 - cm no 0.56 -
(63) ! 5.2e-06 42.3 0.0 NC_005072.1_Prochlorococcus_marinus_MED4_complete_genome 817330 817388 + cm no 0.42 -
(64) ! 9.3e-06 41.4 0.0 NZ_CP011941.1_Synechococcus_sp._WH_8020_genome 1668819 1668762 - cm no 0.55 -
(65) ! 7e-05 38.0 0.0 NC_007335.2_Prochlorococcus_marinus_str._NATL2A_complete_genome 1083243 1083187 - cm no 0.49 -
(66) ! 7e-05 38.0 0.0 NC_008819.1_Prochlorococcus_marinus_str._NATL1A_complete_genome 1135171 1135115 - cm no 0.49 -
(67) ! 7.7e-05 37.9 0.0 NZ_CP011941.1_Synechococcus_sp._WH_8020_genome 1678057 1678000 - cm no 0.55 -
Internal CM pipeline statistics summary:
----------------------------------------
Query model(s): 1 (60 consensus positions)
Target sequences: 161 (550846556 residues searched)
Target sequences re-searched for truncated hits: 161 (121716 residues re-searched)
Windows passing local HMM SSV filter: 409221 (0.1592); expected (0.15)
Windows passing local HMM Viterbi filter: 236589 (0.09504); expected (0.15)
Windows passing local HMM Viterbi bias filter: 230955 (0.09279); expected (0.15)
Windows passing local HMM Forward filter: 2971 (0.001249); expected (0.0008)
Windows passing local HMM Forward bias filter: 2867 (0.001207); expected (0.0008)
Windows passing glocal HMM Forward filter: 1955 (0.0008423); expected (0.0008)
Windows passing glocal HMM Forward bias filter: 1935 (0.0008326); expected (0.0008)
Envelopes passing glocal HMM envelope defn filter: 1904 (0.0002799); expected (0.0008)
Envelopes passing local CM CYK filter: 795 (7.168e-05); expected (0.0001)
Total CM hits reported: 67 (7.367e-06); includes 0 truncated hit(s)
# CPU time: 28.40u 0.13s 00:00:28.52 Elapsed: 00:00:07.16
//
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