Skip to content

Actions: PavlidisLab/rnaseq-pipeline

Actions

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
64 workflow runs
64 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Few fixes for the webviewer
Python Package using Conda #116: Commit 533d237 pushed by arteymix
March 20, 2024 17:20 1m 11s master
March 20, 2024 17:20 1m 11s
Fix duplicated keys in metadata dict
Python Package using Conda #115: Commit 71c0247 pushed by arteymix
March 13, 2024 21:56 1m 23s master
March 13, 2024 21:56 1m 23s
Fix duplicated keys in metadata dict
Python Package using Conda #114: Commit b9ff1d8 pushed by arteymix
March 13, 2024 21:56 2m 50s master
March 13, 2024 21:56 2m 50s
Ensure that sample_id and experiment_id are passed when extracting ba…
Python Package using Conda #113: Commit 20a570d pushed by arteymix
March 13, 2024 21:36 1m 28s master
March 13, 2024 21:36 1m 28s
Move metadata mixin to DownloadGeoSampleMetadata
Python Package using Conda #112: Commit 0226f3c pushed by arteymix
March 7, 2024 00:30 1m 14s master
March 7, 2024 00:30 1m 14s
Bump patch version to 2.1.12
Python Package using Conda #111: Commit 85ca58f pushed by arteymix
March 6, 2024 22:29 1m 8s v2.1.12
March 6, 2024 22:29 1m 8s
Bump patch version to 2.1.12
Python Package using Conda #110: Commit 85ca58f pushed by arteymix
March 6, 2024 22:29 1m 9s master
March 6, 2024 22:29 1m 9s
Set minimum version of bioluigi to 0.1.3
Python Package using Conda #109: Commit a975ef8 pushed by arteymix
March 6, 2024 22:29 1m 11s master
March 6, 2024 22:29 1m 11s
ci: Update actions
Python Package using Conda #108: Commit f1be072 pushed by arteymix
March 5, 2024 20:04 2m 17s master
March 5, 2024 20:04 2m 17s
Fix target class for DownloadSraProjectRunInfo
Python Package using Conda #107: Commit 43767db pushed by arteymix
March 5, 2024 19:16 1m 10s master
March 5, 2024 19:16 1m 10s
Update RSEM
Python Package using Conda #106: Commit 766df06 pushed by arteymix
March 5, 2024 19:11 2m 18s master
March 5, 2024 19:11 2m 18s
Expire SRA and GEO metadata after 14 days
Python Package using Conda #105: Commit 90985ba pushed by arteymix
March 5, 2024 19:09 1m 45s master
March 5, 2024 19:09 1m 45s
Add a retry count of 3 for prefetch
Python Package using Conda #104: Commit 9e49bdb pushed by arteymix
January 30, 2024 19:45 2m 12s master
January 30, 2024 19:45 2m 12s
Fix missing taxon parameter in test
Python Package using Conda #103: Commit 524e7b1 pushed by arteymix
January 22, 2024 21:04 2m 9s master
January 22, 2024 21:04 2m 9s
Update cutadapt and MultiQC
Python Package using Conda #102: Commit 222dfdc pushed by arteymix
January 22, 2024 19:49 1m 57s master
January 22, 2024 19:49 1m 57s
Fix reference names for examples
Python Package using Conda #101: Commit 7f98909 pushed by arteymix
January 22, 2024 19:49 2m 17s master
January 22, 2024 19:49 2m 17s
Add a script and a systemd unit for starting the webviewer
Python Package using Conda #100: Commit 5cd89b4 pushed by arteymix
January 22, 2024 18:04 2m 17s master
January 22, 2024 18:04 2m 17s
Handle rows missing a GeneID db_xref
Python Package using Conda #99: Commit 3f0c2f2 pushed by arteymix
October 30, 2023 21:08 12m 31s master
October 30, 2023 21:08 12m 31s
Use the dbxref to match NCBI gene IDs
Python Package using Conda #98: Commit cedf89f pushed by arteymix
October 20, 2023 19:05 17m 19s master
October 20, 2023 19:05 17m 19s
Add script for converting GTF for Gemma's generic platform
Python Package using Conda #97: Commit 7021598 pushed by arteymix
October 20, 2023 17:53 13m 17s master
October 20, 2023 17:53 13m 17s
Add a helper script to submit a single experiment
Python Package using Conda #96: Commit e30585a pushed by arteymix
October 18, 2023 20:23 13m 15s master
October 18, 2023 20:23 13m 15s
Fix default priority when loading experiments from a file
Python Package using Conda #95: Commit da20769 pushed by arteymix
October 13, 2023 20:57 12m 55s master
October 13, 2023 20:57 12m 55s
Few improvements when purging failed DumpSraRun tasks
Python Package using Conda #94: Commit 9900254 pushed by arteymix
October 13, 2023 20:49 13m 19s master
October 13, 2023 20:49 13m 19s
Make SubmitExperimentBatchInfoToGemma rerunnable
Python Package using Conda #93: Commit 0e26277 pushed by arteymix
October 13, 2023 20:47 11m 37s master
October 13, 2023 20:47 11m 37s
Remove TaskWithPriorityMixin and only apply priority to SubmitExperim…
Python Package using Conda #92: Commit b8699b2 pushed by arteymix
October 12, 2023 23:18 14m 41s master
October 12, 2023 23:18 14m 41s