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The **CombineModels** only works the first time it is run, why? #10

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jumbojing opened this issue Jun 28, 2021 · 4 comments
Open

The **CombineModels** only works the first time it is run, why? #10

jumbojing opened this issue Jun 28, 2021 · 4 comments

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@jumbojing
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The CombineModels only works the first time it is run, why?

In 3dSlicer(4.11.20210226 r29738 / 7a593c8), when I run this module, I can see the results only when I run it for the first time, but I can't see anything when I run it again. Why?
@lassoan
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lassoan commented Jun 28, 2021

Please provide your input data sets (upload somewhere and post the link here) and any error or warning messages that you see in the application log (menu: Help / Report a bug).

@jumbojing
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https://drive.google.com/file/d/10VYPypmvmXU9uTt1dINNIDLDESeG3jdH/view?usp=sharing
I want to intersection the boneTempt and sec0, and get model 29...

@jumbojing
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[DEBUG][Python] 29.06.2021 00:34:12 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/pydicom/datadict.py:432) - Reversing DICOM dictionary so can look up tag from a keyword...
[DEBUG][Python] 29.06.2021 00:34:14 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.11/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 29.06.2021 00:34:16 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.11/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 29.06.2021 00:34:16 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.11/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Session start time .......: 2021-06-29 00:34:09
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Slicer version ...........: 4.11.20210226 (revision 29738 / 7a593c8) macosx-amd64 - installed release
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Operating system .........: Mac OS X / 10.15.7 / 19H2 / UTF-8 - 64-bit
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Memory ...................: 8192 MB physical, 3072 MB virtual
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - CPU ......................: GenuineIntel Intel(R) Core(TM) i5-8279U CPU @ 2.40GHz, 4 cores, 8 logical processors
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - VTK configuration ........: OpenGL2 rendering, Sequential threading
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Qt configuration .........: version 5.15.1, with SSL, requested OpenGL 3.2 (core profile)
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Developer mode enabled ...: yes
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Prefer executable CLI ....: yes
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Application path .........: /Applications/Slicer.app/Contents/MacOS
[DEBUG][Qt] 29.06.2021 00:34:09 [] (unknown:0) - Additional module paths ..: Extensions-29738/ResectionPlanner/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/SlicerRT/lib/Slicer-4.11/cli-modules, Extensions-29738/SlicerRT/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/SlicerRT/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/ModelClip/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/SlicerJupyter/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/SlicerJupyter/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/SegmentEditorExtraEffects/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/MarkupsToModel/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/SurfaceWrapSolidify/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/DebuggingTools/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/LesionSimulator/lib/Slicer-4.11/cli-modules, Extensions-29738/LesionSimulator/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/SlicerIGT/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/SlicerIGT/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/PathReconstruction/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/PathReconstruction/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/Sandbox/lib/Slicer-4.11/qt-loadable-modules, Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules, Extensions-29738/BoneTextureExtension/lib/Slicer-4.11/cli-modules, Extensions-29738/BoneTextureExtension/lib/Slicer-4.11/qt-scripted-modules, /Users/liguimei/Documents/GitHub/PedicleScrewSimulator-1, Extensions-29738/AnglePlanesExtension/lib/Slicer-4.11/qt-scripted-modules
[DEBUG][Qt] 29.06.2021 00:34:16 [] (unknown:0) - Switch to module: "Welcome"
[INFO][Stream] 29.06.2021 00:34:26 [] (unknown:0) - Loading Slicer RC file [/Users/liguimei/.slicerrc.py]
[INFO][Stream] 29.06.2021 00:34:26 [] (unknown:0) - Jupyter connection file: [/Users/liguimei/Library/Jupyter/runtime/kernel-d2749c15-07df-46a7-84ed-af1858a3c880.json]
[CRITICAL][Stream] 29.06.2021 00:34:26 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 29.06.2021 00:34:26 [] (unknown:0) - File "", line 1, in
[CRITICAL][Stream] 29.06.2021 00:34:26 [] (unknown:0) - RuntimeError: std::exception: Address already in use
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.946 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.955 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.957 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.962 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.964 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.966 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:49 [] (unknown:0) - 2021-06-29 00:34:49.980 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[CRITICAL][FD] 29.06.2021 00:34:52 [] (unknown:0) - 2021-06-29 00:34:52.519 Slicer[24858:1714596] Path given to -[NSWorkspace iconForFile:] is not a full path.
[INFO][VTK] 29.06.2021 00:34:55 [vtkMRMLVolumeArchetypeStorageNode (0x7feeeb0400a0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: /var/folders/9b/mhf79phj3ss95qk4p1_vw6gh0000gn/T/Slicer-liguimei/RemoteIO/__BundleLoadTemp-2021-06-29_003453_497/2021-06-28/Data/Lumbar103.nrrd. Dimensions: 464x352x229. Number of components: 1. Pixel type: short.
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9ae57e0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode1
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9acaf80)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode2
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9ad1ec0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode3
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9ae1260)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode4
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9af4900)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode5
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feee9af92f0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode6
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feeeb05d3c0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode7
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feeeb017540)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode8
[ERROR][VTK] 29.06.2021 00:34:55 [vtkMRMLMarkupsFiducialNode (0x7feeeb0381e0)] (/Volumes/D/S/S-1/Libs/MRML/Core/vtkMRMLStorableNode.cxx:324) - UpdateScene: error getting 0th storage node, id = vtkMRMLMarkupsJsonStorageNode9
[DEBUG][Qt] 29.06.2021 00:34:55 [] (unknown:0) - "MRB Slicer Data Bundle" Reader has successfully read the file "/Users/liguimei/Google Drive/我的云端硬盘/2021-06-28.mrb" "[1.91s]"
[DEBUG][Qt] 29.06.2021 00:35:13 [] (unknown:0) - Switch to module: "CombineModels"
[INFO][Python] 29.06.2021 00:35:25 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:304) - Processing started
[INFO][Python] 29.06.2021 00:35:32 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:352) - Processing completed in 7.35 seconds
[INFO][Stream] 29.06.2021 00:35:25 [] (unknown:0) - Processing started
[ERROR][VTK] 29.06.2021 00:35:32 [vtkPolyDataBooleanFilter (0x7feee7846cc0)] (/Volumes/D/S/S-1-E-b/Sandbox/CombineModels/Logic/vtkPolyDataBooleanFilter.cxx:216) - Contact ends suddenly at point 0.
[INFO][Stream] 29.06.2021 00:35:32 [] (unknown:0) - Processing completed in 7.35 seconds
[DEBUG][Qt] 29.06.2021 00:36:09 [] (unknown:0) - Switch to module: "Data"
[DEBUG][Qt] 29.06.2021 00:37:09 [] (unknown:0) - Switch to module: "CombineModels"
[INFO][Python] 29.06.2021 00:37:24 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:304) - Processing started
[INFO][Python] 29.06.2021 00:37:31 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:352) - Processing completed in 7.27 seconds
[INFO][Stream] 29.06.2021 00:37:24 [] (unknown:0) - Processing started
[ERROR][VTK] 29.06.2021 00:37:31 [vtkPolyDataBooleanFilter (0x7feeeaed2f30)] (/Volumes/D/S/S-1-E-b/Sandbox/CombineModels/Logic/vtkPolyDataBooleanFilter.cxx:216) - Contact ends suddenly at point 0.
[INFO][Stream] 29.06.2021 00:37:31 [] (unknown:0) - Processing completed in 7.27 seconds
[INFO][Python] 29.06.2021 00:38:02 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:304) - Processing started
[INFO][Python] 29.06.2021 00:38:10 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:352) - Processing completed in 7.73 seconds
[INFO][Stream] 29.06.2021 00:38:02 [] (unknown:0) - Processing started
[ERROR][VTK] 29.06.2021 00:38:10 [vtkPolyDataBooleanFilter (0x7feec750af30)] (/Volumes/D/S/S-1-E-b/Sandbox/CombineModels/Logic/vtkPolyDataBooleanFilter.cxx:216) - Contact ends suddenly at point 0.
[INFO][Stream] 29.06.2021 00:38:10 [] (unknown:0) - Processing completed in 7.73 seconds
[INFO][Python] 29.06.2021 00:38:10 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:304) - Processing started
[INFO][Python] 29.06.2021 00:38:17 [Python] (/Applications/Slicer.app/Contents/Extensions-29738/Sandbox/lib/Slicer-4.11/qt-scripted-modules/CombineModels.py:352) - Processing completed in 7.24 seconds
[INFO][Stream] 29.06.2021 00:38:10 [] (unknown:0) - Processing started
[ERROR][VTK] 29.06.2021 00:38:17 [vtkPolyDataBooleanFilter (0x7feeeb0628e0)] (/Volumes/D/S/S-1-E-b/Sandbox/CombineModels/Logic/vtkPolyDataBooleanFilter.cxx:216) - Contact ends suddenly at point 0.
[INFO][Stream] 29.06.2021 00:38:17 [] (unknown:0) - Processing completed in 7.24 seconds
[DEBUG][Qt] 29.06.2021 00:38:35 [] (unknown:0) - Switch to module: "Data"

@lassoan
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lassoan commented Jun 28, 2021

Contact ends suddenly at point 0

This means that one of the inputs had non-manifold edges. How did you create the input meshes?

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@lassoan @jumbojing