.gitmodules

[submodule "libs/bit_array"]
	path = libs/bit_array
	url = https://github.com/noporpoise/BitArray
	branch = master
[submodule "libs/string_buffer"]
	path = libs/string_buffer
	url = https://github.com/noporpoise/string_buffer
	branch = master
[submodule "libs/madcrowlib"]
	path = libs/madcrowlib
	url = https://github.com/noporpoise/madcrowlib
	branch = master
[submodule "libs/htslib"]
	path = libs/htslib
	url = git://github.com/samtools/htslib.git
	ignore = dirty
	branch = develop
[submodule "libs/bcftools"]
	path = libs/bcftools
	url = git://github.com/samtools/bcftools.git
	ignore = dirty
	branch = develop
[submodule "libs/samtools"]
	path = libs/samtools
	url = git://github.com/samtools/samtools.git
	ignore = dirty
	branch = develop
[submodule "libs/seq_file"]
	path = libs/seq_file
	url = https://github.com/noporpoise/seq_file.git
	branch = master
[submodule "libs/bwa"]
	path = libs/bwa
	url = https://github.com/lh3/bwa.git
	ignore = dirty
	branch = master
[submodule "libs/sort_r"]
	path = libs/sort_r
	url = https://github.com/noporpoise/sort_r.git
	branch = master
[submodule "libs/bioinf-perl"]
	path = libs/bioinf-perl
	url = https://github.com/noporpoise/bioinf-perl.git
	branch = master
[submodule "libs/msg-pool"]
	path = libs/msg-pool
	url = https://github.com/noporpoise/msg-pool.git
	branch = master
[submodule "libs/readsim"]
	path = libs/readsim
	url = https://github.com/noporpoise/readsim.git
	branch = master
[submodule "libs/seq-align"]
	path = libs/seq-align
	url = https://github.com/noporpoise/seq-align.git
	branch = master
[submodule "libs/xxHash"]
	path = libs/xxHash
	url = https://github.com/Cyan4973/xxHash.git
	ignore = dirty
	branch = master
[submodule "libs/biogrok"]
	path = libs/biogrok
	url = https://github.com/noporpoise/biogrok.git
	branch = master
[submodule "libs/vcfhp"]
	path = libs/vcf-slim
	url = https://github.com/noporpoise/vcf-slim
[submodule "libs/carrays"]
	path = libs/carrays
	url = https://github.com/noporpoise/carrays.git