add subtitles from youtube edited by Steve

Author: fedorov

tutorials/intro-cc/dcmqi-part1-updated.sbv

@@ -0,0 +1,185 @@
+0:00:00.470,0:00:06.289
+in this video we will go over the steps
+
+0:00:06.289,0:00:08.180
+you will need to complete to set up the
+
+0:00:08.180,0:00:10.340
+environment on your computer to use the
+
+0:00:10.340,0:00:13.190
+same dcmqi as a first step you will need to
+
+0:00:13.190,0:00:16.970
+install docker on your system once you
+
+0:00:16.970,0:00:19.310
+have completed that step you can issue
+
+0:00:19.310,0:00:22.939
+the docker pool command to retrieve the
+
+0:00:22.939,0:00:26.449
+dcmqi image from the docker hub this
+
+0:00:26.449,0:00:28.460
+will take some time but eventually this
+
+0:00:28.460,0:00:30.980
+process will complete and the library
+
+0:00:30.980,0:00:33.350
+will be available for use on your
+
+0:00:33.350,0:00:35.810
+computer to verify that installation
+
+0:00:35.810,0:00:37.220
+completed successfully
+
+0:00:37.220,0:00:40.340
+you can issue docker image ls command to
+
+0:00:40.340,0:00:41.600
+confirm that the image has been
+
+0:00:41.600,0:00:45.320
+installed after that you can run the
+
+0:00:45.320,0:00:48.650
+entry point of the container by issuing
+
+0:00:48.650,0:00:51.950
+the run command and pass in the name of
+
+0:00:51.950,0:00:54.110
+the converter he would like to use to
+
+0:00:54.110,0:00:56.600
+the run command as we discussing the
+
+0:00:56.600,0:00:58.880
+tutorial later
+
+0:00:58.880,0:01:01.670
+next we will need to install the 3D
+
+0:01:01.670,0:01:04.820
+slicer application which is the free
+
+0:01:04.820,0:01:06.650
+open-source platform for image
+
+0:01:06.650,0:01:11.480
+visualization and processing please use
+
+0:01:11.480,0:01:13.610
+the nightly build version and download the
+
+0:01:13.610,0:01:16.130
+package on your computer once download
+
+0:01:16.130,0:01:18.680
+is completed you will need to unpack
+
+0:01:18.680,0:01:22.880
+this package and drag the application to
+
+0:01:22.880,0:01:24.740
+your application folder if you're using
+
+0:01:24.740,0:01:30.110
+Mac once 3D Slicer is installed we will
+
+0:01:30.110,0:01:33.740
+also need to install certain extensions
+
+0:01:33.740,0:01:37.070
+that are designed to help you visualize
+
+0:01:37.070,0:01:45.030
+the data generated by dcmqi
+
+0:01:45.030,0:01:50.010
+to do that he will need to open extension
+
+0:01:50.010,0:01:52.440
+manager and search for quantitative
+
+0:01:52.440,0:01:57.570
+reporting extension the dependences of
+
+0:01:57.570,0:01:59.759
+quantitative reporting will be installed
+
+0:01:59.759,0:02:02.159
+automatically and include dcmqi extension
+
+0:02:02.159,0:02:05.670
+you can also install TCIA browser which
+
+0:02:05.670,0:02:07.979
+is an extension that provides the
+
+0:02:07.979,0:02:10.590
+interface to the cancer imaging archive
+
+0:02:10.590,0:02:12.959
+of the National Cancer Institute it can
+
+0:02:12.959,0:02:14.940
+be handy to retrieve sample data sets
+
+0:02:14.940,0:02:18.209
+that we will use in the tutorial
+
+0:02:18.209,0:02:23.489
+finally the last tool that you can
+
+0:02:23.489,0:02:28.260
+install he is the atom editor atom is a
+
+0:02:28.260,0:02:30.540
+modern editor which is extensible via
+
+0:02:30.540,0:02:35.730
+plugins and we provide a plug-in that
+
+0:02:35.730,0:02:38.940
+allows you to look into the content of
+
+0:02:38.940,0:02:42.390
+dicom data this plugin can be helpful to
+
+0:02:42.390,0:02:45.600
+explore the objects that you create as
+
+0:02:45.600,0:02:47.550
+part of the conversion while using dcmqi
+
+0:02:47.550,0:02:52.500
+search for the dicom dump package in
+
+0:02:52.500,0:02:54.840
+the install packages menu of the item
+
+0:02:54.840,0:02:57.750
+browser item editor install the package
+
+0:02:57.750,0:03:00.840
+and once you've done that go to the
+
+0:03:00.840,0:03:06.180
+settings and make sure that path to the
+
+0:03:06.180,0:03:09.329
+dcmtk installation that is listed in the
+
+0:03:09.329,0:03:11.880
+settings option of the editor is
+
+0:03:11.880,0:03:13.739
+populated with the path as shown on the
+
+0:03:13.739,0:03:18.799
+screen