The TRIAGE R package is a powerful, integrated toolkit developed by our team to decipher the regulatory complexities of transcriptome dynamics and cell identity in development and disease.
TRIAGE R package is particularly useful for researchers focusing on:
- Transcriptome analysis to uncover regulatory gene networks, applicable to both bulk RNA-seq and single-cell RNA-seq
- Discovery, characterization, and prioritization of regulatory genes
- Exploring key regulatory genes in developmental and disease contexts
- Integrated toolkit: We consolidate all TRIAGE methods into a single, cohesive package, simplifying usage for researchers with even basic R knowledge.
- User-friendly functions for regulatory gene analysis and visualization: The package provides a suite of streamlined functions that allow for seamless integration of regulatory gene analysis into standard workflows.
- Multi-species support: Extends its utility across a variety of biological models, making it versatile for different research contexts.
- Enhanced performance: Features significant improvements in computational efficiency and compatibility.
You can download the latest release of TRIAGE here.
The complete TRIAGE R package manual is available via readthedocs.
If you use or discuss the TRIAGE R package in your research, please cite our paper:
Qiongyi Zhao, et al. "TRIAGE: an R package for regulatory gene analysis" Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbaf004. https://doi.org/10.1093/bib/bbaf004