.gitignore

# Project specific files
workers/volume
foreman/volume
volume
test_volume
workers/downloader.nomad
workers/processor.nomad
workers/test_volume/processed/TEST/TRANSCRIPTOME_INDEX/Homo_sapiens_short.tar.gz
volumes_postgres/
aspera*

# Project-specific Nomad related files
nomad.logs
nomad_dir
nomad_dir_test
infrastructure/nomad-job-specs/
workers/nomad-job-specs/*
!workers/nomad-job-specs/*.tpl
foreman/nomad-job-specs/*
!foreman/nomad-job-specs/*.tpl

# Terraform
infrastructure/.terraform/
.circleci/s3_tfstate/.terraform

# We download a lot of files into the test_volume directory when
# running tests, which we don't need to track.
workers/test_volume
# However for a couple tests we do store the data in the repo and need to track them.
!workers/test_volume/raw/TEST/TRANSCRIPTOME_INDEX/aegilops_tauschii_short.gtf.gz
!workers/test_volume/raw/TEST/NO_OP/test.txt

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# IPython Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# dotenv
.env

# virtualenv
venv/
ENV/
dr_env/

# Spyder project settings
.spyderproject

# Rope project settings
.ropeproject

# OSX
.DS_Store
._.DS_Store

# PyCharm
.idea

# emacs backup files
*~