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RELEASE_NOTES.txt
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RELEASE_NOTES.txt
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Version 2.0.1 - XX.01.2024
----------------------------
- GeNorm with interpretation.
Version 2.0.0 - 24.01.2024
----------------------------
- Introduction of Ncopy.
- Introduce RDML v1.4.
- Replace Cq tests by Ncopy tests.
- Change RDML by default yes.
- Absolute quantification only uses Ncopy.
- corrCq is calculated based on Ncopy with PCR eff 2.0:
corrCq = log2(copyThreshold / corrNcopy)
Version 1.6.0 - XX.10.2022
----------------------------
- Improved baseline calculation. The number of cycles
in log phase is limited to a maximum of 12.
- GeNorm can select a subset of samples.
Version 1.5.0 - 17.04.2022
----------------------------
- Improved baseline calculation. Minimum PCR efficiency
is now 1.2, only a found baseline is throwing no
baseline error and an additional error is implemented
for instable baseline.
- "ntc", "nac", "ntp", "nrt" and "opt" samples do not
contribute to mean PCR efficiency calculation.
Version 1.4.0 - internal
----------------------------
- First implementation of baseline correction for negative
values. Not released beyond GitHub.
Version 1.3.0 - 14.02.2022
----------------------------
- Implemented RDML-Analyze with absolute quantification.
- Quantities can be attached to a target.
- Improved inter run correction functionality.
Version 1.2.0 - 18.02.2022
----------------------------
- Implemented RDML-Analyze with inter run correction.
- Implemented RDML-Merge to combine two RDML files.
- Runs can be moved to different experiments within a file.
- Modified handling of negative fluorescence values. Before
they were set to nan, now they are shifted to a small
positive value.
- Fixed the handling of multiplex files.
- Implemented a function to fix different melting curve
temperatures within one scan.
Version 1.1.1 - 24.12.2021
----------------------------
- Reduced unnecessary precision in variable output.
- Fixed bug in csv output of curve data.
Version 1.1.0 - 24.11.2021
----------------------------
- RDML files require the xml data in the file rdml_data.xml.
As some machines do not follow this requirement, the
function load_any_zip(self, filename) opens the first
file contained in the compressed archive.
- Upon import of amplification or melting curve data wells
without the columns Well, Sample, Sample Type, Target,
Target Type and Dye are skipped with a message. This is
intended to be used for empty wells.