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workflow_test.yml
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name: Galaxy Workflow Tests for push and PR
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
setup:
name: Setup cache and determine changed repositories
uses: galaxyproject/iwc/.github/workflows/setup.yml@main
with:
python-version-list: "[\"3.7\"]"
galaxy-fork: galaxyproject
galaxy-branch: release_22.05
max-chunks: 4
# Planemo lint the changed repositories
lint:
name: Lint workflows
needs: setup
if: needs.setup.outputs.repository-list != ''
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7']
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 1
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache .cache/pip
uses: actions/cache@v3
id: cache-pip
with:
path: ~/.cache/pip
key: pip_cache_py_${{ matrix.python-version }}_gxy_${{ needs.setup.outputs.galaxy-head-sha }}
- name: Install wheel
run: pip install wheel
- name: Planemo lint workflows
uses: galaxyproject/planemo-ci-action@v1
with:
mode: lint
workflows: true
repository-list: "${{ needs.setup.outputs.repository-list }}"
test:
name: Test workflows
needs: setup
if: needs.setup.outputs.repository-list != ''
uses: galaxyproject/iwc/.github/workflows/test_workflows.yml@main
with:
galaxy-head-sha: ${{ needs.setup.outputs.galaxy-head-sha }}
chunk-count: ${{ fromJSON(needs.setup.outputs.chunk-count) }}
chunk-list: ${{ needs.setup.outputs.chunk-list }}
python-version-list: "[\"3.7\"]"
repository-list: ${{ needs.setup.outputs.repository-list }}
galaxy-fork: galaxyproject
galaxy-branch: master
check-outputs: false
combine_outputs:
# same as tool step
name: Combine chunked test results
needs: [setup, test]
strategy:
matrix:
python-version: ['3.7']
runs-on: ubuntu-latest
steps:
- uses: actions/download-artifact@v3
with:
path: artifacts
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache .cache/pip
uses: actions/cache@v3
id: cache-pip
with:
path: ~/.cache/pip
key: pip_cache_py_${{ matrix.python-version }}_gxy_{{ needs.setup.outputs.galaxy-head-sha }}
- name: Combine outputs
uses: galaxyproject/planemo-ci-action@v1
id: combine
with:
mode: combine
html-report: true
- uses: actions/upload-artifact@v3
with:
name: 'All tool test results'
path: upload
- name: Check outputs
uses: galaxyproject/planemo-ci-action@v1
id: check
with:
mode: check