RNA-Puzzles dataset

This repository includes all the submitted RNA structures in RNA-Puzzles.

The RNA Puzzles:

• Puzzle 1: RNA dimer of a regulatory element from human thymidylate synthase mRNA
• Puzzle 2: Self-assembling RNA square
• Puzzle 3: Glycine riboswitch
• Puzzle 4: SAM-I riboswitch aptamer
• Puzzle 5: Lariat capping ribozyme.
• Puzzle 6: Adenosylcobalamin riboswitch
• Puzzle 7: Varkud satellite ribozyme
• Puzzle 8: SAM riboswitch
• Puzzle 9: 5-hydroxytryptophan aptamer
• Puzzle 10: T-box riboswitch and tRNA
• Puzzle 11: 7SK
• Puzzle 12: YdaO riboswitch
• Puzzle 13: ZMP riboswitch
• Puzzle 14: L-glutamine riboswitch (Free)
• Puzzle 14: L-glutamine riboswitch (Bound)
• Puzzle 15: Hammerhead
• Puzzle 16: TBA
• Puzzle 17: Pistol ribozyme
• Puzzle 18: Zika virus
• Puzzle 19: Twister sister
• Puzzle 20: Twister sister
• Puzzle 21: Guanidine III Riboswitch
• Puzzle 24: adenovirus virus-associated RNA

Citation

Miao, Zhichao, et al. 
"RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme." 
RNA 23.5 (2017): 655-672.

Miao, Zhichao, et al. 
"RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures." 
Rna (2015).

Cruz, José Almeida, et al. 
"RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction." 
Rna 18.4 (2012): 610-625.