From 1309a235867e94bb8f717b30dd730a1f46666e18 Mon Sep 17 00:00:00 2001
From: Maciej Antczak <maciej.antczak@gmail.com>
Date: Sun, 26 Nov 2017 14:22:31 +0100
Subject: [PATCH 1/2] updating poms for 1.0 branch with snapshot versions

---
 pom.xml | 415 ++++++++++++++++++++++++++++----------------------------
 1 file changed, 206 insertions(+), 209 deletions(-)

diff --git a/pom.xml b/pom.xml
index 4e493c3..8ff30f4 100644
--- a/pom.xml
+++ b/pom.xml
@@ -1,209 +1,206 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<groupId>edu.put.ma</groupId>
-	<artifactId>rnaqua</artifactId>
-	<packaging>jar</packaging>
-	<version>1.0-SNAPSHOT</version>
-	<name>rnaqua</name>
-
-	<issueManagement>
-		<url>https://github.com/mantczak/rnaqua/issues</url>
-		<system>GitHub Issues</system>
-	</issueManagement>
-
-	<licenses>
-		<license>
-			<name>MIT License</name>
-			<url>http://www.opensource.org/licenses/mit-license.php</url>
-			<distribution>repo</distribution>
-		</license>
-	</licenses>
-
-	<scm>
-		<url>https://github.com/mantczak/rnaqua</url>
-		<connection>scm:git:git@github.com:mantczak/rnaqua.git</connection>
-		<developerConnection>scm:git:git@github.com:mantczak/rnaqua.git</developerConnection>
-	</scm>
-
-	<developers>
-		<developer>
-			<name>Maciej Antczak</name>
-			<email>maciej.antczak@cs.put.poznan.pl</email>
-			<url>http://www.cs.put.poznan.pl/mantczak</url>
-		</developer>
-	</developers>
-
-	<properties>
-		<maven.compiler.source>1.7</maven.compiler.source>
-		<maven.compiler.target>1.7</maven.compiler.target>
-		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-		<project.main.class>edu.put.ma.Assessment</project.main.class>
-		<slf4j.version>1.7.12</slf4j.version>
-		<log4j.version>2.2</log4j.version>
-		<sonar.host.url>http://localhost:9000</sonar.host.url>
-		<sonar.java.source>1.7</sonar.java.source>
-	</properties>
-
-	<dependencies>
-		<dependency>
-			<groupId>org.slf4j</groupId>
-			<artifactId>slf4j-api</artifactId>
-			<version>${slf4j.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.logging.log4j</groupId>
-			<artifactId>log4j-slf4j-impl</artifactId>
-			<version>${log4j.version}</version>
-			<scope>runtime</scope>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.logging.log4j</groupId>
-			<artifactId>log4j-api</artifactId>
-			<version>${log4j.version}</version>
-			<scope>runtime</scope>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.logging.log4j</groupId>
-			<artifactId>log4j-core</artifactId>
-			<version>${log4j.version}</version>
-			<scope>runtime</scope>
-		</dependency>
-		<dependency>
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-			<version>2.4</version>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.commons</groupId>
-			<artifactId>commons-lang3</artifactId>
-			<version>3.0</version>
-		</dependency>
-		<dependency>
-			<groupId>commons-cli</groupId>
-			<artifactId>commons-cli</artifactId>
-			<version>1.3.1</version>
-		</dependency>
-		<dependency>
-			<groupId>org.apache.commons</groupId>
-			<artifactId>commons-collections4</artifactId>
-			<version>4.1</version>
-		</dependency>
-		<dependency>
-			<groupId>com.google.guava</groupId>
-			<artifactId>guava</artifactId>
-			<version>19.0</version>
-		</dependency>
-		<dependency>
-			<groupId>org.projectlombok</groupId>
-			<artifactId>lombok</artifactId>
-			<version>1.16.6</version>
-			<scope>provided</scope>
-		</dependency>
-		<dependency>
-			<groupId>org.glassfish.jersey.core</groupId>
-			<artifactId>jersey-client</artifactId>
-			<version>2.25</version>
-		</dependency>
-		<dependency>
-			<groupId>org.glassfish.jersey.containers</groupId>
-			<artifactId>jersey-container-servlet-core</artifactId>
-			<version>2.25</version>
-		</dependency>
-		<dependency>
-			<groupId>org.rauschig</groupId>
-			<artifactId>jarchivelib</artifactId>
-			<version>0.7.0</version>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-			<version>4.12</version>
-			<scope>test</scope>
-		</dependency>
-		<dependency>
-			<groupId>junit-addons</groupId>
-			<artifactId>junit-addons</artifactId>
-			<version>1.4</version>
-			<scope>test</scope>
-		</dependency>
-	</dependencies>
-
-	<build>
-		<finalName>rnaqua</finalName>
-		<plugins>
-			<plugin>
-				<artifactId>maven-compiler-plugin</artifactId>
-				<version>3.2</version>
-				<configuration>
-					<source>${maven.compiler.source}</source>
-					<target>${maven.compiler.target}</target>
-					<encoding>${project.build.sourceEncoding}</encoding>
-				</configuration>
-			</plugin>
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-shade-plugin</artifactId>
-				<version>2.3</version>
-				<configuration>
-					<createDependencyReducedPom>false</createDependencyReducedPom>
-					<filters>
-						<filter>
-							<artifact>*:*</artifact>
-							<excludes>
-								<exclude>META-INF/*.SF</exclude>
-								<exclude>META-INF/*.DSA</exclude>
-								<exclude>META-INF/*.RSA</exclude>
-							</excludes>
-						</filter>
-					</filters>
-				</configuration>
-				<executions>
-					<execution>
-						<phase>package</phase>
-						<goals>
-							<goal>shade</goal>
-						</goals>
-						<configuration>
-							<transformers>
-								<transformer
-									implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
-								<transformer
-									implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
-									<mainClass>${project.main.class}</mainClass>
-								</transformer>
-							</transformers>
-						</configuration>
-					</execution>
-				</executions>
-			</plugin>
-			<plugin>
-				<groupId>org.codehaus.mojo</groupId>
-				<artifactId>sonar-maven-plugin</artifactId>
-				<version>2.5</version>
-			</plugin>
-			<plugin>
-				<groupId>external.atlassian.jgitflow</groupId>
-				<artifactId>jgitflow-maven-plugin</artifactId>
-				<version>1.0-m5.1</version>
-				<configuration>
-					<flowInitContext>
-						<masterBranchName>master</masterBranchName>
-						<developBranchName>develop</developBranchName>
-						<featureBranchPrefix>feature-</featureBranchPrefix>
-						<releaseBranchPrefix>release-</releaseBranchPrefix>
-						<hotfixBranchPrefix>hotfix-</hotfixBranchPrefix>
-						<versionTagPrefix>v</versionTagPrefix>
-					</flowInitContext>
-					<noDeploy>true</noDeploy>
-				</configuration>
-			</plugin>
-		</plugins>
-		<resources>
-			<resource>
-				<directory>src/main/resources</directory>
-				<filtering>true</filtering>
-			</resource>
-		</resources>
-	</build>
-</project>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<groupId>edu.put.ma</groupId>
+	<artifactId>rnaqua</artifactId>
+	<packaging>jar</packaging>
+	<version>1.0-SNAPSHOT</version>
+	<name>rnaqua</name>
+
+	<issueManagement>
+		<url>https://github.com/mantczak/rnaqua/issues</url>
+		<system>GitHub Issues</system>
+	</issueManagement>
+
+	<licenses>
+		<license>
+			<name>MIT License</name>
+			<url>http://www.opensource.org/licenses/mit-license.php</url>
+			<distribution>repo</distribution>
+		</license>
+	</licenses>
+
+	<scm>
+		<url>https://github.com/mantczak/rnaqua</url>
+		<connection>scm:git:git@github.com:mantczak/rnaqua.git</connection>
+		<developerConnection>scm:git:git@github.com:mantczak/rnaqua.git</developerConnection>
+	</scm>
+
+	<developers>
+		<developer>
+			<name>Maciej Antczak</name>
+			<email>maciej.antczak@cs.put.poznan.pl</email>
+			<url>http://www.cs.put.poznan.pl/mantczak</url>
+		</developer>
+	</developers>
+
+	<properties>
+		<maven.compiler.source>1.7</maven.compiler.source>
+		<maven.compiler.target>1.7</maven.compiler.target>
+		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+		<project.main.class>edu.put.ma.Assessment</project.main.class>
+		<slf4j.version>1.7.12</slf4j.version>
+		<log4j.version>2.2</log4j.version>
+		<sonar.host.url>http://localhost:9000</sonar.host.url>
+		<sonar.java.source>1.7</sonar.java.source>
+	</properties>
+
+	<dependencies>
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>slf4j-api</artifactId>
+			<version>${slf4j.version}</version>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.logging.log4j</groupId>
+			<artifactId>log4j-slf4j-impl</artifactId>
+			<version>${log4j.version}</version>
+			<scope>runtime</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.logging.log4j</groupId>
+			<artifactId>log4j-api</artifactId>
+			<version>${log4j.version}</version>
+			<scope>runtime</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.logging.log4j</groupId>
+			<artifactId>log4j-core</artifactId>
+			<version>${log4j.version}</version>
+			<scope>runtime</scope>
+		</dependency>
+		<dependency>
+			<groupId>commons-io</groupId>
+			<artifactId>commons-io</artifactId>
+			<version>2.4</version>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.commons</groupId>
+			<artifactId>commons-lang3</artifactId>
+			<version>3.0</version>
+		</dependency>
+		<dependency>
+			<groupId>commons-cli</groupId>
+			<artifactId>commons-cli</artifactId>
+			<version>1.3.1</version>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.commons</groupId>
+			<artifactId>commons-collections4</artifactId>
+			<version>4.1</version>
+		</dependency>
+		<dependency>
+			<groupId>com.google.guava</groupId>
+			<artifactId>guava</artifactId>
+			<version>19.0</version>
+		</dependency>
+		<dependency>
+			<groupId>org.projectlombok</groupId>
+			<artifactId>lombok</artifactId>
+			<version>1.16.6</version>
+			<scope>provided</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.glassfish.jersey.core</groupId>
+			<artifactId>jersey-client</artifactId>
+			<version>2.25</version>
+		</dependency>
+		<dependency>
+			<groupId>org.glassfish.jersey.containers</groupId>
+			<artifactId>jersey-container-servlet-core</artifactId>
+			<version>2.25</version>
+		</dependency>
+		<dependency>
+			<groupId>org.rauschig</groupId>
+			<artifactId>jarchivelib</artifactId>
+			<version>0.7.0</version>
+		</dependency>
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+			<version>4.12</version>
+			<scope>test</scope>
+		</dependency>
+		<dependency>
+			<groupId>junit-addons</groupId>
+			<artifactId>junit-addons</artifactId>
+			<version>1.4</version>
+			<scope>test</scope>
+		</dependency>
+	</dependencies>
+
+	<build>
+		<finalName>rnaqua</finalName>
+		<plugins>
+			<plugin>
+				<artifactId>maven-compiler-plugin</artifactId>
+				<version>3.2</version>
+				<configuration>
+					<source>${maven.compiler.source}</source>
+					<target>${maven.compiler.target}</target>
+					<encoding>${project.build.sourceEncoding}</encoding>
+				</configuration>
+			</plugin>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-shade-plugin</artifactId>
+				<version>2.3</version>
+				<configuration>
+					<createDependencyReducedPom>false</createDependencyReducedPom>
+					<filters>
+						<filter>
+							<artifact>*:*</artifact>
+							<excludes>
+								<exclude>META-INF/*.SF</exclude>
+								<exclude>META-INF/*.DSA</exclude>
+								<exclude>META-INF/*.RSA</exclude>
+							</excludes>
+						</filter>
+					</filters>
+				</configuration>
+				<executions>
+					<execution>
+						<phase>package</phase>
+						<goals>
+							<goal>shade</goal>
+						</goals>
+						<configuration>
+							<transformers>
+								<transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
+								<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
+									<mainClass>${project.main.class}</mainClass>
+								</transformer>
+							</transformers>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
+			<plugin>
+				<groupId>org.codehaus.mojo</groupId>
+				<artifactId>sonar-maven-plugin</artifactId>
+				<version>2.5</version>
+			</plugin>
+			<plugin>
+				<groupId>external.atlassian.jgitflow</groupId>
+				<artifactId>jgitflow-maven-plugin</artifactId>
+				<version>1.0-m5.1</version>
+				<configuration>
+					<flowInitContext>
+						<masterBranchName>master</masterBranchName>
+						<developBranchName>develop</developBranchName>
+						<featureBranchPrefix>feature-</featureBranchPrefix>
+						<releaseBranchPrefix>release-</releaseBranchPrefix>
+						<hotfixBranchPrefix>hotfix-</hotfixBranchPrefix>
+						<versionTagPrefix>v</versionTagPrefix>
+					</flowInitContext>
+					<noDeploy>true</noDeploy>
+				</configuration>
+			</plugin>
+		</plugins>
+		<resources>
+			<resource>
+				<directory>src/main/resources</directory>
+				<filtering>true</filtering>
+			</resource>
+		</resources>
+	</build>
+</project>

From cf9f694f704353b7e76c7017f99a10f37df46563 Mon Sep 17 00:00:00 2001
From: Maciej Antczak <maciej.antczak@gmail.com>
Date: Sun, 26 Nov 2017 14:22:58 +0100
Subject: [PATCH 2/2] updating poms for branch'release-1.0' with non-snapshot
 versions

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 8ff30f4..abc3bd1 100644
--- a/pom.xml
+++ b/pom.xml
@@ -3,7 +3,7 @@
 	<groupId>edu.put.ma</groupId>
 	<artifactId>rnaqua</artifactId>
 	<packaging>jar</packaging>
-	<version>1.0-SNAPSHOT</version>
+	<version>1.0</version>
 	<name>rnaqua</name>
 
 	<issueManagement>