diff --git a/workflows/litscan/queries/lncipedia.sql b/workflows/litscan/queries/lncipedia.sql new file mode 100644 index 00000000..333e3999 --- /dev/null +++ b/workflows/litscan/queries/lncipedia.sql @@ -0,0 +1,16 @@ +-- LNCipedia (Extract BCRP3 gene) +select + upi, + taxid, + gene, + gene_synonym -- Split on , +from xref x +join rnc_accessions ra +on + ra.accession = x.ac +where + x.deleted = 'N' + and ra."database" = 'LNCIPEDIA' + and (ra."gene" = 'lnc-GGT1-7' or ra."gene" = 'lnc-GGT1-16') + and ra."gene_synonym" != '' +;