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Java GitHub

DOI SWH

Summary

A java code analysing the Bending Stiffness of Actin Filament Experiment.

  • Reads coordinates from snake.txt of a measured filament (an example is in the images directory)
  • Calculates the mean squared displacement (MSD) and contour length from data
  • Error calculation in persistence length and contour length are saved in mathematica directory.
  • (optional) Modify config.properties as needed.

Running the Demo

  1. Place your snake.txt and elongation.txt files in the data directory (an example exists).
  2. Compile and run the Snake class.
javac -d out src/Snake.java
java -cp out Snake