Baker R, Patterson J, DeVivo J (2024). +
Baker R, Patterson J, DeVivo J (2025). NPSdataverse: Tools and Packages for Data and Metadata Manipulation. R package version 0.1.0, https://github.com/nationalparkservice/NPSdataverse.
@Manual{,
title = {NPSdataverse: Tools and Packages for Data and Metadata Manipulation},
author = {Robert Baker and Judd Patterson and Joe DeVivo},
- year = {2024},
+ year = {2025},
note = {R package version 0.1.0},
url = {https://github.com/nationalparkservice/NPSdataverse},
}
diff --git a/docs/paper.html b/docs/paper.html
index a30d560..f6c3cb8 100644
--- a/docs/paper.html
+++ b/docs/paper.html
@@ -103,7 +103,7 @@ By default, EMLeditor functions provide verbose user feedback and may require user input to confirm some operations. These checks are intended to help guide users, prevent inadvertent mistakes, and limit unnecessary API calls. However, requiring user input can hamper highly scripted approaches and limits reproducability. Therefore, all EMLeditor functions can be set to circumvent these requirements using the parameter force = FALSE.
By default, EMLeditor functions provide verbose user feedback and may require user input to confirm some operations. These checks are intended to help guide users, prevent inadvertent mistakes, and limit unnecessary API calls. However, requiring user input can hamper highly scripted approaches and limits reproducibility. Therefore, all EMLeditor functions can be set to circumvent these requirements using the parameter force = TRUE.
#example setting the abstract while suppressing user feedback and input:
new_metadata <- set_abstract(eml_object = old_metadata,
@@ -117,19 +117,19 @@ DPchecker R Package
NPSutils R Package
-The [NPSutils](https://nationalparkservice.github.io/NPSutils/) (“NPS utilities”) package serves primarily as a way to access data [@Baker_NPSutils2024]. NPSutils provides avenues for directly downloading data from DataStore using R. NPSutils can also import data downloaded from any repository into R and take advantage of rich EML metadata to call column types. NPSutils provides some basic meta-analysis capability, assuming certain interoperabilty standards are met (such as consistently naming columns with Darwin Core parameters or other domain-accepted parameter names). NPSutils can also be used to import data and metadata into common data visualization tools.
+The [NPSutils](https://nationalparkservice.github.io/NPSutils/) (“NPS utilities”) package serves primarily as a way to access data [@Baker_NPSutils2024]. NPSutils provides avenues for directly downloading data from DataStore using R. NPSutils can also import data downloaded from any repository into R and take advantage of rich EML metadata to call column types. NPSutils provides some basic meta-analysis capability. NPSutils can also be used to import data and metadata into common data visualization tools.
Example of how to download and access data:
# download a data package from datastore:
# the data package will be downloaded to ./data/2300498
NPSutils::get_data_package(2300498)
-# load the data package into R:
+# load the data package into R, and use the metadata to call column types
# returns a list of tibbles; each tibble corresponds to a single data file
mojn <- NPSutils::load_data_package(2300498, assign_attributes = TRUE)
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 96dcace..a9733ee 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -1,6 +1,6 @@
-pandoc: 3.1.11
+pandoc: '3.2'
pkgdown: 2.1.0
pkgdown_sha: ~
articles:
NPSdataverse: NPSdataverse.html
-last_built: 2024-10-28T22:07Z
+last_built: 2025-01-15T22:40Z
diff --git a/docs/reference/NPSdataverse_packages.html b/docs/reference/NPSdataverse_packages.html
index e4ac32c..6e1b1b0 100644
--- a/docs/reference/NPSdataverse_packages.html
+++ b/docs/reference/NPSdataverse_packages.html
@@ -63,18 +63,9 @@ List all packages imported by NPSdataverse
Examples
NPSdataverse_packages()
-#> [1] "cli"
-#> [2] "crayon"
-#> [3] "DPchecker"
-#> [4] "EML"
-#> [5] "EMLassemblyline"
-#> [6] "EMLeditor"
-#> [7] "NPSutils"
-#> [8] "QCkit"
-#> [9] "rstudioapi"
-#> [10] "utils"
-#> [11] "remotes"
-#> [12] "lifecycle"
+#> [1] "cli" "crayon" "DPchecker" "EML"
+#> [5] "EMLassemblyline" "EMLeditor" "NPSutils" "QCkit"
+#> [9] "rstudioapi" "utils" "remotes" "lifecycle"