From 0e38c66020c0252eefa08c3f67317d81818b2e00 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 7 Feb 2024 14:32:21 -0700 Subject: [PATCH 01/33] add DRR template file as a rmd template in Rstudio. --- .../skeleton/skeleton.Rmd | 560 ++++++++++++++++++ inst/rmarkdown/templates/template.yaml | 4 + 2 files changed, 564 insertions(+) create mode 100644 inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd create mode 100644 inst/rmarkdown/templates/template.yaml diff --git a/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd new file mode 100644 index 0000000..e042a59 --- /dev/null +++ b/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd @@ -0,0 +1,560 @@ +--- +output: + word_document: default + pdf_document: default +bibliography: references.bib +csl: national-park-service-DRR.csl +--- + +```{=html} + +``` +```{r user_edited_parameterss, include=FALSE} +# The title of your DRR. Should all DRR start with "Data Release Report:"? Should we enforce titles specifically referencing the data package(s) they the report is about? +title <- "DRR Title" + +# Optional and should only be included if publishing to the semi-official DRR series. Contact Joe if you are. If not, leave as NULL +reportNumber <- ": get this number from Joe DeVivo" + +# This should match the Data Store Reference ID for this DRR. Eventually we should be able to pull this directly from the data package metadata. +DRR_DSRefID <- 7654321 + +#Author names and affiliations: + +#One way to think of the author information is that you are building a table: + +# Author | Affiliation | ORCID +# Jane | Institute 1 | 0000-1111-2222-3333 +# Jane | Institute 2 | 0000-1111-2222-3333 +# John | Institute 2 | NA + +#once the table is built, authors can be associated with the appropriate institute via relevant superscripts and the institutes can be listed only once in the DRR. + +# list the authors. If an author has multiple institutional affiliations, you must list the author multiple times. In this example, Jane Doe is listed twice because she has two affiliations. +authorNames <- c( + "Jane Doe", + "Jane Doe", + "John Doe" +) + +# List author affiliations. The order of author affiliations must match the order of the authors in AuthorNames. If an author has multiple affiliations, the author must be listed 2 (or more) times under authorNames (above) and each affiliation should be listed in order. If authors share the same affiliation, the affiliation should be listed once for each author. In this case, Managed Business Solutions (MBS) is listed twice because it is associated with two authors. MBS will only print to the DRR once. + +#Note that the entirety of each affiliation is enclosed in quotations. Do not worry about indentation or word wrapping. +authorAffiliations <- c( + "NPS Inventory and Monitoring Division, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", + "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", + "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado" +) + +# List the ORCID iDs for each author in the format "(xxxx-xxxx-xxxx-xxxx)". If an author does not have an ORCID iD, specify NA (no quotes). If an author is listed more than once (for instance because they have multiple institutional affiliations), the ORCID iD must also be listed more than once. For more information on ORCID iDs and to register an ORCID iD, see https://www.orcid.org. + +#The order of the ORCID iDs must match the order of authors in AuthorNames.In this example, Jane Doe has an ORCID iD but John Doe does not. Jane's ORCID iD is listed twice because she her name is listed twice in authorNames(because she has two authorAffiliations). +authorORCID <- c( + "(0000-1111-2222-3333)", "(0000-1111-2222-3333)", NA + ) + +# Replace the text below with your abstract. +DRRabstract <- "Abstract Should go here. Multiple Lines are okay; it'll format correctly. Pay careful attention to non-standard characters, line breaks (
), carriage returns, and curly-quotes. You may find it useful to write the abstract in NotePad++ or some other text editor and not a word processor (such as Microsoft Word).\n\n + +Note that if you need multiple paragraphs or line breaks you can generate them using a combination of backslashes and n's. \n\n + +The abstract should succinctly describe the study, the assay(s) performed, the resulting data, and their reuse potential, but should not make any claims regarding new scientific findings. No references are allowed in this section." + +# DataStore reference ID for the data package associated with this report. You must have at least one data package.Eventually, we will automate importing much of this information from metadata. +dataPackageRefID <- c(12342567) + +# Must match title in DataStore and metadata +dataPackageTitle <- "Data Package Title" + +# Must match descriptions in the data package metadata +dataPackageDescription <- "Short title for data package1" + +# generates your data package DOI based on the data package DataStore reference ID. This is different from the DRR DOI! No need to edit this. +dataPackageDOI <- paste0("https://doi.org/10.57830/", dataPackageRefID) + +# list the file names in your data package. Do NOT include metadata files. +dataPackage_fileNames <- c( + "my_data.csv", + "my_data2.csv" +) + +# list the approximate size of each data file. Make sure the order corresponds to the order of of the file names in dataPackage_fileNames +dataPackage_fileSizes <- c("0.8 MB", "10 GB") + +# list a short, one-line description of each data file. Descriptions must be in the same order as the filenames. +dataPackage_fileDescript <- c( + "This is a short description of my_data.csv (a good guideline is 10 words or less).", + "This is a short description of my_data2.csv.") +``` + +```{r setup_do_not_edit, include=FALSE} +RRpackages <- c("markdown", + "rmarkdown", + "pander", + "knitr", + "yaml", + "kableExtra", + "devtools", + "tidyverse") + +inst <- RRpackages %in% installed.packages() +if (length(RRpackages[!inst]) > 0) { + install.packages(RRpackages[!inst], dep = TRUE, repos = "https://cloud.r-project.org") +} +lapply(RRpackages, library, character.only = TRUE) + +devtools::install_github("EmilyMarkowitz-NOAA/NMFSReports") +library(NMFSReports) +devtools::install_github("nationalparkservice/QCkit") +library(QCkit) +``` + +*`r (paste0("https://doi.org/10.38750/", DRR_DSRefID))`* + +```{r title_do_not_edit, echo=FALSE, results="asis"} +date <- format(Sys.time(), "%d %B, %Y") +cat("#", title, "\n") +if (!is.null(reportNumber)) { + subtitle <- paste0("Data Release Report ", reportNumber) + cat("###", subtitle) +} +``` + +```{r authors_do_not_edit, echo=FALSE, results="asis"} +author_list <- data.frame(authorNames, authorAffiliations, authorORCID) +unique_authors <- author_list %>% distinct(authorNames, + .keep_all = TRUE) +unique_affiliation <- author_list %>% distinct(authorAffiliations, + .keep_all = TRUE) + +#single author documents: +if(length(seq_along(unique_authors$authorNames)) == 1){ + + for (i in seq_along(unique_authors$authorNames)) { + curr <- unique_authors[i, ] + + #find all author affiliations + aff <- author_list[which(authorNames == curr$authorNames),] + aff <- aff$authorAffiliations + + #identify order of affiliation(s) in a unique list of affiliations + #build the superscripts for author affiliations + super_script <- unique_affiliation$authorAffiliations %in% aff + super <- which(super_script == TRUE) + script <- super + + if(length(seq_along(super)) > 1){ + script <- NULL + j <- 1 + while(j < length(seq_along(super))){ + script <- append(script, paste0(super[j],",")) + j <- j+1 + } + if(j == length(seq_along(super))){ + script <- append(script, super[j]) + } + } + } + cat("#### ", curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, "") + cat({{ orc }}) + } + cat(" ^",script,"^", " ", " ", sep="") + + #cat("#### ", unique_authors$authorNames, "^1^", sep="") + #if(!is.na(authorORCID)){ + # orc <- paste0(" https://orcid.org/", unique_authors$authorORCID) + # cat({{ orc }}, "\n") + #} + #cat("#### ", unique_authors$authorAffiliations, sep="") +} + +#multi author documents: +if(length(seq_along(unique_authors$authorNames)) > 1){ + for (i in seq_along(unique_authors$authorNames)) { + curr <- unique_authors[i, ] + + #find all author affiliations + aff <- author_list[which(authorNames == curr$authorNames),] + aff <- aff$authorAffiliations + + #identify order of affiliation(s) in a unique list of affiliations + #build the superscripts for author affiliations + super_script <- unique_affiliation$authorAffiliations %in% aff + super <- which(super_script == TRUE) + script <- super + + if(length(seq_along(super)) > 1){ + script <- NULL + j <- 1 + while(j < length(seq_along(super))){ + script <- append(script, paste0(super[j],",")) + j <- j+1 + } + if(j == length(seq_along(super))){ + script <- append(script, super[j]) + } + } + + # if NOT the second-to-last author: + if(i < (length(seq_along(unique_authors$authorNames)) - 1)){ + cat("#### ", curr$authorNames, " ", sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat( " ^", script, "^", ", ", " ", sep = "") + } + + # if IS the second-to-last author + if(i == (length(seq_along(unique_authors$authorNames)) - 1)){ + + #if 3 or more authors, include a comma before the "and": + if(length(seq_along(unique_authors$authorNames)) > 2){ + cat(curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^",script,"^", ", ", sep="") + cat("and ", sep="") + } + + #If only 2 authors, omit comma before "and": + if(length(seq_along(unique_authors$authorNames)) == 2){ + cat("#### ", curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^",script,"^ ", sep = "") + cat("and ", sep="") + } + } + + # if IS the Last author : + if(i == length(seq_along(unique_authors$authorNames))){ + cat(curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^", script, "^", sep = "") + } + } +} +cat("\n\n") +for(i in 1:nrow(unique_affiliation)){ + cat("^",i,"^ ", unique_affiliation[i,2], "\n\n", sep="") + } +``` + +# Abstract + +`r DRRabstract` + +
+ +# Acknowledgements (optional) + +The Acknowledgements should contain text acknowledging non-author contributors. Acknowledgements should be brief, and should not include thanks to anonymous referees and editors or effusive comments. Grant or contribution numbers may be acknowledged. + +# Using citations in this document: + +To automate citations, add the citation to in bibtex format to the file "references.bib". You can manually copy and paste the bibtex for each reference in, or you can search for it from within Rstudio. From within Rstudio, make sure you are editing this document using the "Visual" view (as opposed to "Source"). From the "Insert" drop-down menu, select "\@ Citation..." (shortcut: Cntrl-Shift-F8). This will open a tool where you can view all the citations in your reference.bib file as well as search multiple databases for references, automatically insert the bibtex for the reference into your references.bib file (and customize the unique identifier if you'd like) and insert the in-text citation into the DRR template. + +Once a reference is in your references.bib file, from within this template you can simply type the '\@' symbol and select which reference to insert in the text. + +If you need to edit how the citation is displayed after inserting it into the text, switch back to the "Source" view. Each bibtex citation should start with a unique identifier; the example reference in the supplied references.bib file has the unique identifier "\@article{Scott1994,". Using the "Source" view in Rstudio, insert the reference in your text, by combining the "at" symbol with the portion of the unique identifier after the curly bracket: @Scott1994 . You can put a citation in parentheses using square brackets: [@Scott1994]. This will be rendered as (Scott, et al. 1994) in text. You can add multiple authors works a single parenthetical citation by separating them with a semi-colon. You can suppress the author and cite just the year by using a - symbol before the \@ : [-@Scott1994]. + +If you would like to format your citations manually, please feel free to do that instead. Make sure to examine the References section for examples of how to manually format each citation type. + +# Data Records (required) + +## Data Inputs (optional) + +If the data package being described was generated based on one or more pre-existing datasets, cite those datasets here. + +## Summary of Datasets Created (required) + +The Data Records section should be used to explain each data record associated with this work (for instance, a data package), including the DOI indicating where this information is stored, and provide an overview of the data files and their formats. Each external data record should be cited. Below is some sample text: + +This DRR describes the data package *`r dataPackageTitle`* which contains a metadata file and `r length(dataPackage_fileNames)` data files. These data were compiled and processed for dissemination by the National Park Service Inventory and Monitoring Division (IMD) and are available at `r dataPackageDOI` (see Table 1). + +```{r FileTable, echo=FALSE} +filelist <- data.frame(dataPackage_fileNames, dataPackage_fileSizes, dataPackage_fileDescript) + +knitr::kable(filelist, caption = paste0("**Table 1. ", dataPackageTitle, ": List of data files.**"), col.names = c("**File Name**", "**Size**", "**Description**"), format = "pandoc") +``` + +See Appendix for additional notes and examples. + +# Data Quality Evaluation (required) + +The Data Quality Evaluation section should present any analyses that are needed to support the technical quality of the dataset. This section may be supported by figures and tables, as needed. *This is a required section*; authors must provide information to justify the reliability of their data. Wherever possible & appropriate, data quality evaluation should be presented in the context of data standards and quality control procedures as prescribed in the project's quality assurance planning documentation. + +**Required elements for this section** + +*Required Table* + +```{r dataAcceptanceCriteria, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table of acceptance criteria for each of the data quality fields in your data package. Mitigations taken when data did not meet the acceptance criteria should be described textually in the Data Quality Evaluation section. + +# Specify which columns in your data package are data quality fields in the dataQualityFields variable. In the example below, data quality fields/columns in the data package are listed in the format [FieldName]_flag. These data quality fields relate to the respective temporal, taxonomic, and geographic data. + +dataQualityFields <- c( + "eventDate_flag", + "scientificName_flag", + "coordinate_flag" + ) + +# Brief description of the acceptance criteria for each respective data quality field. The order of the acceptance criteria must match the order of the data quality fields. + +dataQualityAcceptanceCriteria <- c( + "Sampling event date within the start and end dates of the project", + "Taxon exists within Integrated Taxonomic Information System and GBIF", + "Sampling location is within the park unit boundaries" + ) + +data_criteria<-data.frame(dataQualityFields = str_remove(dataQualityFields, "_flag"), dataQualityAcceptanceCriteria) + +data_criteria %>% + NMFSReports::format_cells(1:3, 1, "bold") %>% + knitr::kable(caption = "**Table 2. Acceptance criteria for data evaluated.**", col.names=c("**Field**", "**Acceptance Criteria**"), format="pandoc", align = 'c') + +``` + +```{r data_column_flagging, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table summarizing QC at the column level within each file. All flagged columns are included. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". + +#set directory to the location of your data package: +path <- "../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" +dc_flags <- QCkit::get_custom_flags(directory = path, output="columns") +dc_flags$`File Name` <- gsub(".csv", "", dc_flags$`File Name`) + + +colnames(dc_flags)[2]<-paste0("Measure", "^1^") +colnames(dc_flags)[4]<-paste0("A", "^2^") +colnames(dc_flags)[8]<-paste0("% Accepted", "^3^") + +#Generate the table: +dc_flags %>% + knitr::kable( + caption = '**Table 3: Summary of data quality flags for each column [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', + format = "pandoc", + digits = 2, + align = 'c', + col.names = c("**File Name**", "**Measure^1^**", "**Number of Reocrds**", "**A^2^**", "**AE**", "**R**", "**P**", "**% Accepted^3^**")) %>% +kableExtra::add_footnote( + c("The '_flag' suffix has been omitted from column names for brevity.", + "All non-missing data in specified unflagged columns are considered accepted.", + "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), + notation = "number" + ) + +``` + +```{r data_package_flagging, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table summarizing data quality across all flagged columns of each data file. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". + +#set directory to the location of your data package +path<-"../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" +dp_flags <- get_custom_flags(directory = path, output="files") + +#generate table: +dp_flags %>% + kableExtra::kbl(caption = '**Table 4: Summary of data quality flags for the data package [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', + format = "pandoc", + col.names = c("**File Name**", "**A^1^**", "**AE**", "**R**", "**P**", "**% Accepted^2^**"), + digits=2, + align = 'c') %>% + kableExtra::add_footnote(c("All non-missing data in specified unflagged columns are considered accepted.", + "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), notation = "number") +``` + +Possible content **strongly Suggested to Include** + +- Occurrence rates or patterns in data that do not meet established standards or data quality objectives. + +Possible content **may include:** + +- experiments that support or validate the data-collection procedure(s) (e.g. negative controls, or an analysis of standards to confirm measurement linearity) +- statistical analyses of experimental error and variation +- general discussions of any procedures used to ensure reliable and unbiased data production, such as chain of custody procedures, blinding and randomization, sample tracking systems, etc. +- any other information needed for assessment of technical rigor by reviewers/users + +Generally, this **should not include:** + +- follow-up experiments aimed at testing or supporting an interpretation of the data +- statistical hypothesis testing (e.g. tests of statistical significance, identifying deferentially expressed genes, trend analysis, etc.) +- exploratory computational analyses like clustering and annotation enrichment (e.g. GO analysis). + +*Stock Text to include:* + +The data within the data records listed above have been reviewed by staff in the NPS Inventory and Monitoring Division to ensure accuracy, completeness, and consistency with documented data quality standards, as well as for usability and reproducibility (Table 3). Of the data that were evaluated for quality, XX.X% of fields in this data package met data quality standards. The *`r dataPackageTitle`* is suitable for its intended use as of the date of processing (`r Sys.Date()`). + +# Usage Notes (required) + +The Usage Notes should contain brief instructions to assist other researchers with reuse of the data. This may include discussion of software packages (with appropriate citations) that are suitable for analysing the assay data files, suggested downstream processing steps (e.g. normalization, etc.), or tips for integrating or comparing the data records with other datasets. Authors are encouraged to provide code, programs or data-processing workflows if they may help others understand or use the data. + +For studies involving privacy or safety controls on public access to the data, this section should describe in detail these controls, including how authors can apply to access the data, what criteria will be used to determine who may access the data, and any limitations on data use. + +## Acquiring the Data Package + +This data package is available for download from the NPS DataStore at `r dataPackageDOI` and can be directly imported into R data frames using the NPSutils package + +# Methods + +Ideally these methods are identical to the methods listed in the metadata accompanying the data package that the DRR describes.Future versions of this template will pull directly from metadata. + +The Methods should cite previous methods under use but also be detailed enough describing data production including experimental design, data acquisition assays, and any computational processing (e.g. normalization, image feature extraction) such that others can understand the methods and processing steps without referring to associated publications. Cite and link to the DataStore reference for the protocol for detailed methods sufficient for reproducing the experiment or observational study. Related methods should be grouped under corresponding subheadings where possible, and methods should be described in enough detail to allow other researchers to interpret the full study. + +Specific data inputs and outputs should be explicitly cited in the text and included in the References section below, following the same [Chicago Manual of Style author-date format](https://www.chicagomanualofstyle.org/tools_citationguide/citation-guide-2.html) in text. See the [USGS data citation guidelines](https://www.usgs.gov/data-management/data-citation) for examples of how to cite data in text and in the References section. + +Authors are encouraged to consider creating a figure that outlines the experimental workflow(s) used to generate and analyse the data output(s) (Figure 1). + +```{r figure1, echo=FALSE, fig.cap="Example general workflow to include in the methods section."} +include_graphics("vignettes/common/ProcessingWorkflow.png") +``` + +## Data Collection and Sample Processing Methods (optional) + +Include a description of field methods and sample processing + +## Additional Data Sources (optional) + +Provide descriptions (with citations) of other data sources used. + +## Data Processing (required if done) + +Summarize process and results of any QC processes done that manipulate, change, or qualify data. + +## Code Availability (required) + +For all studies using custom code in the generation or processing of datasets, a statement must be included indicating whether and how the code can be accessed and any restrictions to access. This section should also include information on the versions of any software used, if relevant, and any specific variables or parameters used to generate, test, or process the current dataset. Actual analytical code should be provided in Appendices. + +# References (required) + +Provide sufficient information to locate the resource. If the citation has a DOI, include the DOI at the end of the citation, including the prefix. If you are citing documents that have unregistered DOIs (such as a data package that you are working on concurrently) still include the DOI. Electronic resources data and data services or web sites should include the date they were accessed. Keep the following line of code if you would like to automate generating and formatting references: + +::: {#refs} +::: + +If you would like to manually format your references, delete the preceding two lines and use the following examples instead: Include bibliographic information for any works cited (including the data package the DRR is describing) in the above sections, using the standard *NPS NR Publication Series* referencing style. + +See the following examples: + +## Agency, Company, etc. as Author Examples + +Fung Associates Inc. and SWCA Environmental Consultants. 2010. Assessment of natural resources and watershed conditions for Kalaupapa National Historical Park. Natural Resource Report. NPS/NPRC/WRD/NRR—2010/261. National Park Service, Fort Collins, Colorado. + +Greater Yellowstone Whitebark Pine Monitoring Working Group. 2014. Monitoring whitebark pine in the Greater Yellowstone Ecosystem: 2013 annual report. Natural Resource Data Series. NPS/GRYN/NRDS—2014/631. National Park Service. Fort Collins, Colorado. + +National Park Service (NPS). 2016. State of the park report for Zion National Park. State of the Park Reports. No. 23. National Park Service. Washington, District of Columbia. + +U.S. Forest Service (USFS). 1993. ECOMAP. National hierarchical framework of ecological units. U. S. Forest Service, Washington, D.C. + +## Traditional Journal Article Examples + +Bradbury, J. W., S. L. Vehrencamp, K. E. Clifton, and L. M. Clifton. 1996. The relationship between bite rate and local forage abundance in wild Thompson’s gazelles. Ecology 77:2237–2255. + +Oakley, K. L., L. P. Thomas, and S. G. Fancy. 2003. Guidelines for long-term monitoring protocols. Wildlife Society Bulletin 31(4):1000–1003. + +Sawaya, M. A., T. K. Ruth, S. Creel, J. J. Rotella, J. B. Stetz, H. B. Quigley, and S. T. Kalinowski. 2011. Evaluation of noninvasive genetic sampling methods for cougars in Yellowstone National Park. The Journal of Wildlife Management 75(3):612–622. + +## Book Example + +Harvill, A. M., Jr., T. R. Bradley, C. E. Stevens, T. F. Wieboldt, D. M. E. Ware, D. W. Ogle, and G. W. Ramsey. 1992. Atlas of the Virginia flora, third edition. Virginia Botanical Associates, Farmville, Virginia. + +## Book Chapter Examples + +McCauly, E. 1984. The estimation of abundance and biomass of zooplankton in samples. Pages 228–265 in J. A. Dowling and F. H. Rigler, editors. A manual on methods for the assessment of secondary productivity in fresh waters. Blackwell Scientific, Oxford, UK. + +Watson, P. J. 2004. Of caves and shell mounds in west-central Kentucky. Pages 159–164 in Of caves and shell mounds. The University of Alabama Press, Tuscaloosa, Alabama. + +## Published Report Examples + +Bass, S., R. E. Gallipeau, Jr., M. Van Stappen, J. Kumer, M. Wessner, S. Petersburg, L. L. Hays, J. Milstone, M. Soukup, M. Fletcher, L. G. Adams, and others. 1988. Highlights of natural resource management 1987. National Park Service, Denver, Colorado. + +Holthausen, R. S., M. G. Raphael, K. S. McKelvey, E. D. Forsman, E. E. Starkey, and D. E. Seaman. 1994. The contribution of federal and nonfederal habitats to the persistence of the northern spotted owl on the Olympic Peninsula, Washington. General Technical Report PNW–GTR–352. U.S. Forest Service, Corvallis, Oregon. + +Jackson, L. L., and L. P. Gough. 1991. Seasonal and spatial biogeochemical trends for chaparral vegetation and soil geochemistry in the Santa Monica Mountains National Recreation Area. U.S. Geological Survey, Denver. Open File Report 91–0005. + +## Unpublished Report Examples + +Conant, B., and J. I. Hodges. 1995. Western brant population estimates. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. + +Conant, B., and J. F. Voelzer. 2001. Winter waterfowl survey: Mexico west coast and Baja California. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. + +## Thesis/Dissertation Examples + +Diong, C. H. 1982. Population and biology of the feral pig (Sus scrofa L) in Kipahulu Valley, Mau’i. Dissertation. University of Hawai’i, Honolulu, Hawai’i. + +McTigue, K. M. 1992. Nutrient pulses and herbivory: Integrative control of primary producers in lakes. Thesis. University of Wisconsin, Madison, Wisconsin. + +## Conference Proceedings Examples + +Gunther, K. A. 1994. Changing problems in bear management: Yellowstone National Park twenty-plus years after the dumps. Ninth International Conference on Bear Research and Management. Missoula, MT, International Association for Bear Research and Management, Bozeman, Montana, February 1992:549–560. + +Webb, J. R., and J. N. Galloway. 1991. Potential acidification of streams in Mid-Appalachian Highlands: A problem with generalized assessments. Southern Appalachian Man and Biosphere Conference. Gatlinburg, Tennessee. + +## General Internet Examples + +Colorado Native Plant Society. 2016. Colorado Native Plant Society website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016a. IRMA Portal (Integrated Resource Management Applications) website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016b. Natural Resource Publications Management website. Available at: (accessed 07 March 2016). + +United Sates Fish and Wildlife Service (USFWS). 2016. Endangered Species website. Available at: (accessed 07 March 2016). + +## Online Data Warehouse Sites (sites that allow you see and download data from multiple sources) + +National Oceanographic and Atmospheric Association (NOAA). 2016. NOAA National Climatic Data Center website. Available at: (accessed 07 March 2016). + +Environmental Protection Agency (EPA). 2016. Storage and Retrieval Data Warehouse website (STORET). Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016c. NPScape Landscape Dynamics Metric Viewer website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016d. NPSpecies online application. Available at: (accessed 07 March 2016). + +United States Geologic Survey (USGS). 2016. BioData - Aquatic Bioassessment Data for the Nation. Available at: (accessed 07 March 2016). + +# Appendix A. Code Listing + +In most cases, Code listing is not required. If all QA/QC and data manipulations were performed elsewhere, you should cite that code in the methods (and leave the "Listing" code chunk as the default settings: eval=FALSE and echo=FALSE). If you have developed custom scripts, you can add those to DataStore with the reference type "Script" and cite them in the DRR. Some people have developed code to perform QA/QC or data manipulation within the DRR itself. In that case, you must set the "Listing" code chunk to eval=TRUE and echo=TRUE to fully document the QA/QC process. + +```{r Listing, ref.label=knitr::all_labels(), echo=TRUE, eval=TRUE} + +``` + +\pagebreak + +# Appendix B. Session and Version Information + +In most cases you do not need to report session info (leave the "session-info" code chunk parameters in their default state: eval=FALSE). Session and version information is only necessary if you have set the "Listing" code chunk to eval=TRUE in appendix A. In that case, change the "session-info" code chunk parameters to eval=TRUE. + +```{r session-info, eval=TRUE, echo=FALSE, cache=FALSE} +sessionInfo() +Sys.time() +``` diff --git a/inst/rmarkdown/templates/template.yaml b/inst/rmarkdown/templates/template.yaml new file mode 100644 index 0000000..01bd841 --- /dev/null +++ b/inst/rmarkdown/templates/template.yaml @@ -0,0 +1,4 @@ +name: Editable_EML_Creation_Workflow +description: > + Template for generating EML metadata +create_dir: FALSE From 7e034ae9dfa4009a007ea4c89ae2872eb2791ef7 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 7 Feb 2024 14:40:29 -0700 Subject: [PATCH 02/33] reboot DRR template via usethis --- .../skeleton/skeleton.Rmd | 560 ------------------ .../skeleton/skeleton.Rmd | 348 +++++++++++ .../template.yaml | 4 + inst/rmarkdown/templates/template.yaml | 4 - 4 files changed, 352 insertions(+), 564 deletions(-) delete mode 100644 inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/template.yaml delete mode 100644 inst/rmarkdown/templates/template.yaml diff --git a/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd deleted file mode 100644 index e042a59..0000000 --- a/inst/rmarkdown/templates/editable_DRR_template/skeleton/skeleton.Rmd +++ /dev/null @@ -1,560 +0,0 @@ ---- -output: - word_document: default - pdf_document: default -bibliography: references.bib -csl: national-park-service-DRR.csl ---- - -```{=html} - -``` -```{r user_edited_parameterss, include=FALSE} -# The title of your DRR. Should all DRR start with "Data Release Report:"? Should we enforce titles specifically referencing the data package(s) they the report is about? -title <- "DRR Title" - -# Optional and should only be included if publishing to the semi-official DRR series. Contact Joe if you are. If not, leave as NULL -reportNumber <- ": get this number from Joe DeVivo" - -# This should match the Data Store Reference ID for this DRR. Eventually we should be able to pull this directly from the data package metadata. -DRR_DSRefID <- 7654321 - -#Author names and affiliations: - -#One way to think of the author information is that you are building a table: - -# Author | Affiliation | ORCID -# Jane | Institute 1 | 0000-1111-2222-3333 -# Jane | Institute 2 | 0000-1111-2222-3333 -# John | Institute 2 | NA - -#once the table is built, authors can be associated with the appropriate institute via relevant superscripts and the institutes can be listed only once in the DRR. - -# list the authors. If an author has multiple institutional affiliations, you must list the author multiple times. In this example, Jane Doe is listed twice because she has two affiliations. -authorNames <- c( - "Jane Doe", - "Jane Doe", - "John Doe" -) - -# List author affiliations. The order of author affiliations must match the order of the authors in AuthorNames. If an author has multiple affiliations, the author must be listed 2 (or more) times under authorNames (above) and each affiliation should be listed in order. If authors share the same affiliation, the affiliation should be listed once for each author. In this case, Managed Business Solutions (MBS) is listed twice because it is associated with two authors. MBS will only print to the DRR once. - -#Note that the entirety of each affiliation is enclosed in quotations. Do not worry about indentation or word wrapping. -authorAffiliations <- c( - "NPS Inventory and Monitoring Division, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", - "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", - "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado" -) - -# List the ORCID iDs for each author in the format "(xxxx-xxxx-xxxx-xxxx)". If an author does not have an ORCID iD, specify NA (no quotes). If an author is listed more than once (for instance because they have multiple institutional affiliations), the ORCID iD must also be listed more than once. For more information on ORCID iDs and to register an ORCID iD, see https://www.orcid.org. - -#The order of the ORCID iDs must match the order of authors in AuthorNames.In this example, Jane Doe has an ORCID iD but John Doe does not. Jane's ORCID iD is listed twice because she her name is listed twice in authorNames(because she has two authorAffiliations). -authorORCID <- c( - "(0000-1111-2222-3333)", "(0000-1111-2222-3333)", NA - ) - -# Replace the text below with your abstract. -DRRabstract <- "Abstract Should go here. Multiple Lines are okay; it'll format correctly. Pay careful attention to non-standard characters, line breaks (
), carriage returns, and curly-quotes. You may find it useful to write the abstract in NotePad++ or some other text editor and not a word processor (such as Microsoft Word).\n\n - -Note that if you need multiple paragraphs or line breaks you can generate them using a combination of backslashes and n's. \n\n - -The abstract should succinctly describe the study, the assay(s) performed, the resulting data, and their reuse potential, but should not make any claims regarding new scientific findings. No references are allowed in this section." - -# DataStore reference ID for the data package associated with this report. You must have at least one data package.Eventually, we will automate importing much of this information from metadata. -dataPackageRefID <- c(12342567) - -# Must match title in DataStore and metadata -dataPackageTitle <- "Data Package Title" - -# Must match descriptions in the data package metadata -dataPackageDescription <- "Short title for data package1" - -# generates your data package DOI based on the data package DataStore reference ID. This is different from the DRR DOI! No need to edit this. -dataPackageDOI <- paste0("https://doi.org/10.57830/", dataPackageRefID) - -# list the file names in your data package. Do NOT include metadata files. -dataPackage_fileNames <- c( - "my_data.csv", - "my_data2.csv" -) - -# list the approximate size of each data file. Make sure the order corresponds to the order of of the file names in dataPackage_fileNames -dataPackage_fileSizes <- c("0.8 MB", "10 GB") - -# list a short, one-line description of each data file. Descriptions must be in the same order as the filenames. -dataPackage_fileDescript <- c( - "This is a short description of my_data.csv (a good guideline is 10 words or less).", - "This is a short description of my_data2.csv.") -``` - -```{r setup_do_not_edit, include=FALSE} -RRpackages <- c("markdown", - "rmarkdown", - "pander", - "knitr", - "yaml", - "kableExtra", - "devtools", - "tidyverse") - -inst <- RRpackages %in% installed.packages() -if (length(RRpackages[!inst]) > 0) { - install.packages(RRpackages[!inst], dep = TRUE, repos = "https://cloud.r-project.org") -} -lapply(RRpackages, library, character.only = TRUE) - -devtools::install_github("EmilyMarkowitz-NOAA/NMFSReports") -library(NMFSReports) -devtools::install_github("nationalparkservice/QCkit") -library(QCkit) -``` - -*`r (paste0("https://doi.org/10.38750/", DRR_DSRefID))`* - -```{r title_do_not_edit, echo=FALSE, results="asis"} -date <- format(Sys.time(), "%d %B, %Y") -cat("#", title, "\n") -if (!is.null(reportNumber)) { - subtitle <- paste0("Data Release Report ", reportNumber) - cat("###", subtitle) -} -``` - -```{r authors_do_not_edit, echo=FALSE, results="asis"} -author_list <- data.frame(authorNames, authorAffiliations, authorORCID) -unique_authors <- author_list %>% distinct(authorNames, - .keep_all = TRUE) -unique_affiliation <- author_list %>% distinct(authorAffiliations, - .keep_all = TRUE) - -#single author documents: -if(length(seq_along(unique_authors$authorNames)) == 1){ - - for (i in seq_along(unique_authors$authorNames)) { - curr <- unique_authors[i, ] - - #find all author affiliations - aff <- author_list[which(authorNames == curr$authorNames),] - aff <- aff$authorAffiliations - - #identify order of affiliation(s) in a unique list of affiliations - #build the superscripts for author affiliations - super_script <- unique_affiliation$authorAffiliations %in% aff - super <- which(super_script == TRUE) - script <- super - - if(length(seq_along(super)) > 1){ - script <- NULL - j <- 1 - while(j < length(seq_along(super))){ - script <- append(script, paste0(super[j],",")) - j <- j+1 - } - if(j == length(seq_along(super))){ - script <- append(script, super[j]) - } - } - } - cat("#### ", curr$authorNames, sep="") - if (is.na(curr$authorORCID)) { - } - if (!is.na(curr$authorORCID)) { - orc <- paste0(" ", curr$authorORCID, "") - cat({{ orc }}) - } - cat(" ^",script,"^", " ", " ", sep="") - - #cat("#### ", unique_authors$authorNames, "^1^", sep="") - #if(!is.na(authorORCID)){ - # orc <- paste0(" https://orcid.org/", unique_authors$authorORCID) - # cat({{ orc }}, "\n") - #} - #cat("#### ", unique_authors$authorAffiliations, sep="") -} - -#multi author documents: -if(length(seq_along(unique_authors$authorNames)) > 1){ - for (i in seq_along(unique_authors$authorNames)) { - curr <- unique_authors[i, ] - - #find all author affiliations - aff <- author_list[which(authorNames == curr$authorNames),] - aff <- aff$authorAffiliations - - #identify order of affiliation(s) in a unique list of affiliations - #build the superscripts for author affiliations - super_script <- unique_affiliation$authorAffiliations %in% aff - super <- which(super_script == TRUE) - script <- super - - if(length(seq_along(super)) > 1){ - script <- NULL - j <- 1 - while(j < length(seq_along(super))){ - script <- append(script, paste0(super[j],",")) - j <- j+1 - } - if(j == length(seq_along(super))){ - script <- append(script, super[j]) - } - } - - # if NOT the second-to-last author: - if(i < (length(seq_along(unique_authors$authorNames)) - 1)){ - cat("#### ", curr$authorNames, " ", sep="") - if (is.na(curr$authorORCID)) { - } - if (!is.na(curr$authorORCID)) { - orc <- paste0(" ", curr$authorORCID, " ") - cat({{ orc }}) - } - cat( " ^", script, "^", ", ", " ", sep = "") - } - - # if IS the second-to-last author - if(i == (length(seq_along(unique_authors$authorNames)) - 1)){ - - #if 3 or more authors, include a comma before the "and": - if(length(seq_along(unique_authors$authorNames)) > 2){ - cat(curr$authorNames, sep="") - if (is.na(curr$authorORCID)) { - } - if (!is.na(curr$authorORCID)) { - orc <- paste0(" ", curr$authorORCID, " ") - cat({{ orc }}) - } - cat(" ^",script,"^", ", ", sep="") - cat("and ", sep="") - } - - #If only 2 authors, omit comma before "and": - if(length(seq_along(unique_authors$authorNames)) == 2){ - cat("#### ", curr$authorNames, sep="") - if (is.na(curr$authorORCID)) { - } - if (!is.na(curr$authorORCID)) { - orc <- paste0(" ", curr$authorORCID, " ") - cat({{ orc }}) - } - cat(" ^",script,"^ ", sep = "") - cat("and ", sep="") - } - } - - # if IS the Last author : - if(i == length(seq_along(unique_authors$authorNames))){ - cat(curr$authorNames, sep="") - if (is.na(curr$authorORCID)) { - } - if (!is.na(curr$authorORCID)) { - orc <- paste0(" ", curr$authorORCID, " ") - cat({{ orc }}) - } - cat(" ^", script, "^", sep = "") - } - } -} -cat("\n\n") -for(i in 1:nrow(unique_affiliation)){ - cat("^",i,"^ ", unique_affiliation[i,2], "\n\n", sep="") - } -``` - -# Abstract - -`r DRRabstract` - -
- -# Acknowledgements (optional) - -The Acknowledgements should contain text acknowledging non-author contributors. Acknowledgements should be brief, and should not include thanks to anonymous referees and editors or effusive comments. Grant or contribution numbers may be acknowledged. - -# Using citations in this document: - -To automate citations, add the citation to in bibtex format to the file "references.bib". You can manually copy and paste the bibtex for each reference in, or you can search for it from within Rstudio. From within Rstudio, make sure you are editing this document using the "Visual" view (as opposed to "Source"). From the "Insert" drop-down menu, select "\@ Citation..." (shortcut: Cntrl-Shift-F8). This will open a tool where you can view all the citations in your reference.bib file as well as search multiple databases for references, automatically insert the bibtex for the reference into your references.bib file (and customize the unique identifier if you'd like) and insert the in-text citation into the DRR template. - -Once a reference is in your references.bib file, from within this template you can simply type the '\@' symbol and select which reference to insert in the text. - -If you need to edit how the citation is displayed after inserting it into the text, switch back to the "Source" view. Each bibtex citation should start with a unique identifier; the example reference in the supplied references.bib file has the unique identifier "\@article{Scott1994,". Using the "Source" view in Rstudio, insert the reference in your text, by combining the "at" symbol with the portion of the unique identifier after the curly bracket: @Scott1994 . You can put a citation in parentheses using square brackets: [@Scott1994]. This will be rendered as (Scott, et al. 1994) in text. You can add multiple authors works a single parenthetical citation by separating them with a semi-colon. You can suppress the author and cite just the year by using a - symbol before the \@ : [-@Scott1994]. - -If you would like to format your citations manually, please feel free to do that instead. Make sure to examine the References section for examples of how to manually format each citation type. - -# Data Records (required) - -## Data Inputs (optional) - -If the data package being described was generated based on one or more pre-existing datasets, cite those datasets here. - -## Summary of Datasets Created (required) - -The Data Records section should be used to explain each data record associated with this work (for instance, a data package), including the DOI indicating where this information is stored, and provide an overview of the data files and their formats. Each external data record should be cited. Below is some sample text: - -This DRR describes the data package *`r dataPackageTitle`* which contains a metadata file and `r length(dataPackage_fileNames)` data files. These data were compiled and processed for dissemination by the National Park Service Inventory and Monitoring Division (IMD) and are available at `r dataPackageDOI` (see Table 1). - -```{r FileTable, echo=FALSE} -filelist <- data.frame(dataPackage_fileNames, dataPackage_fileSizes, dataPackage_fileDescript) - -knitr::kable(filelist, caption = paste0("**Table 1. ", dataPackageTitle, ": List of data files.**"), col.names = c("**File Name**", "**Size**", "**Description**"), format = "pandoc") -``` - -See Appendix for additional notes and examples. - -# Data Quality Evaluation (required) - -The Data Quality Evaluation section should present any analyses that are needed to support the technical quality of the dataset. This section may be supported by figures and tables, as needed. *This is a required section*; authors must provide information to justify the reliability of their data. Wherever possible & appropriate, data quality evaluation should be presented in the context of data standards and quality control procedures as prescribed in the project's quality assurance planning documentation. - -**Required elements for this section** - -*Required Table* - -```{r dataAcceptanceCriteria, echo=FALSE, eval=TRUE} -# To turn off, set eval=FALSE. -# Generates a table of acceptance criteria for each of the data quality fields in your data package. Mitigations taken when data did not meet the acceptance criteria should be described textually in the Data Quality Evaluation section. - -# Specify which columns in your data package are data quality fields in the dataQualityFields variable. In the example below, data quality fields/columns in the data package are listed in the format [FieldName]_flag. These data quality fields relate to the respective temporal, taxonomic, and geographic data. - -dataQualityFields <- c( - "eventDate_flag", - "scientificName_flag", - "coordinate_flag" - ) - -# Brief description of the acceptance criteria for each respective data quality field. The order of the acceptance criteria must match the order of the data quality fields. - -dataQualityAcceptanceCriteria <- c( - "Sampling event date within the start and end dates of the project", - "Taxon exists within Integrated Taxonomic Information System and GBIF", - "Sampling location is within the park unit boundaries" - ) - -data_criteria<-data.frame(dataQualityFields = str_remove(dataQualityFields, "_flag"), dataQualityAcceptanceCriteria) - -data_criteria %>% - NMFSReports::format_cells(1:3, 1, "bold") %>% - knitr::kable(caption = "**Table 2. Acceptance criteria for data evaluated.**", col.names=c("**Field**", "**Acceptance Criteria**"), format="pandoc", align = 'c') - -``` - -```{r data_column_flagging, echo=FALSE, eval=TRUE} -# To turn off, set eval=FALSE. -# Generates a table summarizing QC at the column level within each file. All flagged columns are included. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". - -#set directory to the location of your data package: -path <- "../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" -dc_flags <- QCkit::get_custom_flags(directory = path, output="columns") -dc_flags$`File Name` <- gsub(".csv", "", dc_flags$`File Name`) - - -colnames(dc_flags)[2]<-paste0("Measure", "^1^") -colnames(dc_flags)[4]<-paste0("A", "^2^") -colnames(dc_flags)[8]<-paste0("% Accepted", "^3^") - -#Generate the table: -dc_flags %>% - knitr::kable( - caption = '**Table 3: Summary of data quality flags for each column [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', - format = "pandoc", - digits = 2, - align = 'c', - col.names = c("**File Name**", "**Measure^1^**", "**Number of Reocrds**", "**A^2^**", "**AE**", "**R**", "**P**", "**% Accepted^3^**")) %>% -kableExtra::add_footnote( - c("The '_flag' suffix has been omitted from column names for brevity.", - "All non-missing data in specified unflagged columns are considered accepted.", - "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), - notation = "number" - ) - -``` - -```{r data_package_flagging, echo=FALSE, eval=TRUE} -# To turn off, set eval=FALSE. -# Generates a table summarizing data quality across all flagged columns of each data file. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". - -#set directory to the location of your data package -path<-"../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" -dp_flags <- get_custom_flags(directory = path, output="files") - -#generate table: -dp_flags %>% - kableExtra::kbl(caption = '**Table 4: Summary of data quality flags for the data package [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', - format = "pandoc", - col.names = c("**File Name**", "**A^1^**", "**AE**", "**R**", "**P**", "**% Accepted^2^**"), - digits=2, - align = 'c') %>% - kableExtra::add_footnote(c("All non-missing data in specified unflagged columns are considered accepted.", - "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), notation = "number") -``` - -Possible content **strongly Suggested to Include** - -- Occurrence rates or patterns in data that do not meet established standards or data quality objectives. - -Possible content **may include:** - -- experiments that support or validate the data-collection procedure(s) (e.g. negative controls, or an analysis of standards to confirm measurement linearity) -- statistical analyses of experimental error and variation -- general discussions of any procedures used to ensure reliable and unbiased data production, such as chain of custody procedures, blinding and randomization, sample tracking systems, etc. -- any other information needed for assessment of technical rigor by reviewers/users - -Generally, this **should not include:** - -- follow-up experiments aimed at testing or supporting an interpretation of the data -- statistical hypothesis testing (e.g. tests of statistical significance, identifying deferentially expressed genes, trend analysis, etc.) -- exploratory computational analyses like clustering and annotation enrichment (e.g. GO analysis). - -*Stock Text to include:* - -The data within the data records listed above have been reviewed by staff in the NPS Inventory and Monitoring Division to ensure accuracy, completeness, and consistency with documented data quality standards, as well as for usability and reproducibility (Table 3). Of the data that were evaluated for quality, XX.X% of fields in this data package met data quality standards. The *`r dataPackageTitle`* is suitable for its intended use as of the date of processing (`r Sys.Date()`). - -# Usage Notes (required) - -The Usage Notes should contain brief instructions to assist other researchers with reuse of the data. This may include discussion of software packages (with appropriate citations) that are suitable for analysing the assay data files, suggested downstream processing steps (e.g. normalization, etc.), or tips for integrating or comparing the data records with other datasets. Authors are encouraged to provide code, programs or data-processing workflows if they may help others understand or use the data. - -For studies involving privacy or safety controls on public access to the data, this section should describe in detail these controls, including how authors can apply to access the data, what criteria will be used to determine who may access the data, and any limitations on data use. - -## Acquiring the Data Package - -This data package is available for download from the NPS DataStore at `r dataPackageDOI` and can be directly imported into R data frames using the NPSutils package - -# Methods - -Ideally these methods are identical to the methods listed in the metadata accompanying the data package that the DRR describes.Future versions of this template will pull directly from metadata. - -The Methods should cite previous methods under use but also be detailed enough describing data production including experimental design, data acquisition assays, and any computational processing (e.g. normalization, image feature extraction) such that others can understand the methods and processing steps without referring to associated publications. Cite and link to the DataStore reference for the protocol for detailed methods sufficient for reproducing the experiment or observational study. Related methods should be grouped under corresponding subheadings where possible, and methods should be described in enough detail to allow other researchers to interpret the full study. - -Specific data inputs and outputs should be explicitly cited in the text and included in the References section below, following the same [Chicago Manual of Style author-date format](https://www.chicagomanualofstyle.org/tools_citationguide/citation-guide-2.html) in text. See the [USGS data citation guidelines](https://www.usgs.gov/data-management/data-citation) for examples of how to cite data in text and in the References section. - -Authors are encouraged to consider creating a figure that outlines the experimental workflow(s) used to generate and analyse the data output(s) (Figure 1). - -```{r figure1, echo=FALSE, fig.cap="Example general workflow to include in the methods section."} -include_graphics("vignettes/common/ProcessingWorkflow.png") -``` - -## Data Collection and Sample Processing Methods (optional) - -Include a description of field methods and sample processing - -## Additional Data Sources (optional) - -Provide descriptions (with citations) of other data sources used. - -## Data Processing (required if done) - -Summarize process and results of any QC processes done that manipulate, change, or qualify data. - -## Code Availability (required) - -For all studies using custom code in the generation or processing of datasets, a statement must be included indicating whether and how the code can be accessed and any restrictions to access. This section should also include information on the versions of any software used, if relevant, and any specific variables or parameters used to generate, test, or process the current dataset. Actual analytical code should be provided in Appendices. - -# References (required) - -Provide sufficient information to locate the resource. If the citation has a DOI, include the DOI at the end of the citation, including the prefix. If you are citing documents that have unregistered DOIs (such as a data package that you are working on concurrently) still include the DOI. Electronic resources data and data services or web sites should include the date they were accessed. Keep the following line of code if you would like to automate generating and formatting references: - -::: {#refs} -::: - -If you would like to manually format your references, delete the preceding two lines and use the following examples instead: Include bibliographic information for any works cited (including the data package the DRR is describing) in the above sections, using the standard *NPS NR Publication Series* referencing style. - -See the following examples: - -## Agency, Company, etc. as Author Examples - -Fung Associates Inc. and SWCA Environmental Consultants. 2010. Assessment of natural resources and watershed conditions for Kalaupapa National Historical Park. Natural Resource Report. NPS/NPRC/WRD/NRR—2010/261. National Park Service, Fort Collins, Colorado. - -Greater Yellowstone Whitebark Pine Monitoring Working Group. 2014. Monitoring whitebark pine in the Greater Yellowstone Ecosystem: 2013 annual report. Natural Resource Data Series. NPS/GRYN/NRDS—2014/631. National Park Service. Fort Collins, Colorado. - -National Park Service (NPS). 2016. State of the park report for Zion National Park. State of the Park Reports. No. 23. National Park Service. Washington, District of Columbia. - -U.S. Forest Service (USFS). 1993. ECOMAP. National hierarchical framework of ecological units. U. S. Forest Service, Washington, D.C. - -## Traditional Journal Article Examples - -Bradbury, J. W., S. L. Vehrencamp, K. E. Clifton, and L. M. Clifton. 1996. The relationship between bite rate and local forage abundance in wild Thompson’s gazelles. Ecology 77:2237–2255. - -Oakley, K. L., L. P. Thomas, and S. G. Fancy. 2003. Guidelines for long-term monitoring protocols. Wildlife Society Bulletin 31(4):1000–1003. - -Sawaya, M. A., T. K. Ruth, S. Creel, J. J. Rotella, J. B. Stetz, H. B. Quigley, and S. T. Kalinowski. 2011. Evaluation of noninvasive genetic sampling methods for cougars in Yellowstone National Park. The Journal of Wildlife Management 75(3):612–622. - -## Book Example - -Harvill, A. M., Jr., T. R. Bradley, C. E. Stevens, T. F. Wieboldt, D. M. E. Ware, D. W. Ogle, and G. W. Ramsey. 1992. Atlas of the Virginia flora, third edition. Virginia Botanical Associates, Farmville, Virginia. - -## Book Chapter Examples - -McCauly, E. 1984. The estimation of abundance and biomass of zooplankton in samples. Pages 228–265 in J. A. Dowling and F. H. Rigler, editors. A manual on methods for the assessment of secondary productivity in fresh waters. Blackwell Scientific, Oxford, UK. - -Watson, P. J. 2004. Of caves and shell mounds in west-central Kentucky. Pages 159–164 in Of caves and shell mounds. The University of Alabama Press, Tuscaloosa, Alabama. - -## Published Report Examples - -Bass, S., R. E. Gallipeau, Jr., M. Van Stappen, J. Kumer, M. Wessner, S. Petersburg, L. L. Hays, J. Milstone, M. Soukup, M. Fletcher, L. G. Adams, and others. 1988. Highlights of natural resource management 1987. National Park Service, Denver, Colorado. - -Holthausen, R. S., M. G. Raphael, K. S. McKelvey, E. D. Forsman, E. E. Starkey, and D. E. Seaman. 1994. The contribution of federal and nonfederal habitats to the persistence of the northern spotted owl on the Olympic Peninsula, Washington. General Technical Report PNW–GTR–352. U.S. Forest Service, Corvallis, Oregon. - -Jackson, L. L., and L. P. Gough. 1991. Seasonal and spatial biogeochemical trends for chaparral vegetation and soil geochemistry in the Santa Monica Mountains National Recreation Area. U.S. Geological Survey, Denver. Open File Report 91–0005. - -## Unpublished Report Examples - -Conant, B., and J. I. Hodges. 1995. Western brant population estimates. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. - -Conant, B., and J. F. Voelzer. 2001. Winter waterfowl survey: Mexico west coast and Baja California. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. - -## Thesis/Dissertation Examples - -Diong, C. H. 1982. Population and biology of the feral pig (Sus scrofa L) in Kipahulu Valley, Mau’i. Dissertation. University of Hawai’i, Honolulu, Hawai’i. - -McTigue, K. M. 1992. Nutrient pulses and herbivory: Integrative control of primary producers in lakes. Thesis. University of Wisconsin, Madison, Wisconsin. - -## Conference Proceedings Examples - -Gunther, K. A. 1994. Changing problems in bear management: Yellowstone National Park twenty-plus years after the dumps. Ninth International Conference on Bear Research and Management. Missoula, MT, International Association for Bear Research and Management, Bozeman, Montana, February 1992:549–560. - -Webb, J. R., and J. N. Galloway. 1991. Potential acidification of streams in Mid-Appalachian Highlands: A problem with generalized assessments. Southern Appalachian Man and Biosphere Conference. Gatlinburg, Tennessee. - -## General Internet Examples - -Colorado Native Plant Society. 2016. Colorado Native Plant Society website. Available at: (accessed 07 March 2016). - -National Park Service (NPS). 2016a. IRMA Portal (Integrated Resource Management Applications) website. Available at: (accessed 07 March 2016). - -National Park Service (NPS). 2016b. Natural Resource Publications Management website. Available at: (accessed 07 March 2016). - -United Sates Fish and Wildlife Service (USFWS). 2016. Endangered Species website. Available at: (accessed 07 March 2016). - -## Online Data Warehouse Sites (sites that allow you see and download data from multiple sources) - -National Oceanographic and Atmospheric Association (NOAA). 2016. NOAA National Climatic Data Center website. Available at: (accessed 07 March 2016). - -Environmental Protection Agency (EPA). 2016. Storage and Retrieval Data Warehouse website (STORET). Available at: (accessed 07 March 2016). - -National Park Service (NPS). 2016c. NPScape Landscape Dynamics Metric Viewer website. Available at: (accessed 07 March 2016). - -National Park Service (NPS). 2016d. NPSpecies online application. Available at: (accessed 07 March 2016). - -United States Geologic Survey (USGS). 2016. BioData - Aquatic Bioassessment Data for the Nation. Available at: (accessed 07 March 2016). - -# Appendix A. Code Listing - -In most cases, Code listing is not required. If all QA/QC and data manipulations were performed elsewhere, you should cite that code in the methods (and leave the "Listing" code chunk as the default settings: eval=FALSE and echo=FALSE). If you have developed custom scripts, you can add those to DataStore with the reference type "Script" and cite them in the DRR. Some people have developed code to perform QA/QC or data manipulation within the DRR itself. In that case, you must set the "Listing" code chunk to eval=TRUE and echo=TRUE to fully document the QA/QC process. - -```{r Listing, ref.label=knitr::all_labels(), echo=TRUE, eval=TRUE} - -``` - -\pagebreak - -# Appendix B. Session and Version Information - -In most cases you do not need to report session info (leave the "session-info" code chunk parameters in their default state: eval=FALSE). Session and version information is only necessary if you have set the "Listing" code chunk to eval=TRUE in appendix A. In that case, change the "session-info" code chunk parameters to eval=TRUE. - -```{r session-info, eval=TRUE, echo=FALSE, cache=FALSE} -sessionInfo() -Sys.time() -``` diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd new file mode 100644 index 0000000..dfb4e01 --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd @@ -0,0 +1,348 @@ +--- +title: "NPS EML Creation Workflow" +author: "Robert Baker" +date: "The Date" +output: html +--- + +```{r setup, include=FALSE} +knitr::opts_chunk$set(echo = TRUE) +``` + +# Summary +This script acts as a template file for end-to-end creation of EML metadata in R for DataStore. The metadata generated will be of sufficient quality for the data package Reference Type and can be used to automatically populate the DataStore fields for this reference type. The script utilizes multiple R packages and the example inputs are for an EVER Veg Map AA dataset. The example script is meant to either be run as a test of the process or to be replaced with your own content. This is a step by step process where each section should be reviewed, edited if necessary, and run one at a time. After completing a section there is often something to do external to R (e.g. open a text file and add content). Several EMLassemblyline functions are decision points and may only apply to certain data packages. This workflow takes advantage of the NPSdataverse, an R-based ecosystem that includes external EML creation tools such as the R packages EMLassemblyline and EML. However, these tools were not designed to work with DataStore. Therefore, the NPSdatavers and this workflow also incorporate steps from NPS-developed R packages such as EMLeditor and DPchecker. You will necessarily over-write some of the information generated by EMLassemblyline. That is OK and is expected behavior. + +# Good additional references +[EMLassemblyline](https://ediorg.github.io/EMLassemblyline/) +[EMLeditor](https://nationalparkservice.github.io/EMLeditor/index.html) +[EVER Veg Map AA dataset](https://github.com/nationalparkservice/NPS_EML_Script/tree/main/Example_files) (for testing purposes) + +# Install and Load R Packages +Install packages. If you have not recently installed packages, please re-install them. You will want to make sure you have the latest versions of all the NPSdataverse packages - QCkit, EMLeditor, DPchecker, and NPSutils - as they are under constant development. If you are on the VPN, you will need to set your CRAN mirror to Texas 1. If you run into errors installing packages from github on NPS computers you may first need to run: +```{r renviron, eval=FALSE} +options(download.file.method="wininet") +``` +```{r package_install, eval=FALSE} +#install packages +install.packages(c("devtools", "tidyverse")) +devtools::install_github("nationalparkservice/NPSdataverse") +``` +```{r load_packages} +# When loading packages, you may be advised to update to more recent versions +# of dependent packages. Most of these updates likely are not critical. +# However, it is important that you update to the latest versions of QCkit, +# EMLeditor, DPchecker and NPSutils as these NPS packages are under constant +# development. +library(NPSdataverse) +library(tidyverse) +``` + +## Set the overall package details +All of the following items should be reviewed and updated to fit the package you are working on. For lists of more than one item, keep the same order (i.e. item #1 should correspond to the same file in each list). + +#### Metadata filename +This becomes the file name of your .xml file. Be sure it ends in _metadata to comply with data package specifications. You do not need to include the extension (.xml). +```{r metadata_id} +metadata_id <- "Test_EVER_AA_metadata" +``` + +#### Package Title +Give the data package a title. FAIR principles suggest titles of between 7 and 20 words. Be sure to make your title informative and consider how a naive user would interpret it. +```{r package_title} +package_title <- "TEST_Everglades National Park Accuracy Assessment (AA) Data Package" +``` + +#### Data collection status +Choose from either "ongoing" or "complete" +```{r data_status} +data_type <- "complete" +``` + +#### Path to data file(s) +Tell R where your data files are. If they are in the working directory, you can set the working_folder to `getwd()`. If they are in a different directory you will need to specify that directory. +```{r working_dir} +working_folder <- getwd() +# or: +# working_folder <- setwd("C:/users//Documents/my_data_package_folder) +``` + +#### List data files +Tell R what your data files are called. +```{r list_files} +# if the data files are in your working directory (and the only .csv files in your working directory are data files: +data_files <- list.files(pattern = "*.csv") + +# alternatively, you can list the files out manually: +#data_files <- c("qry_Export_AA_points.csv", +# "qry_Export_AA_VegetationDetails.csv") +``` + +#### Name the data files +These should be relatively short, but perhaps more informative than the actual file names. Make sure that they are in the same order as the files in data_files. +```{r data_names} +data_names <- c("TEST_AA Point Location Data", + "TEST_AA Vegetation Coverage Data") +``` + +#### Describe each data file. Data file descriptions should be unique and about 10 words long. Descriptions will be used in auto-generated tables within the ReadMe and DRR. If you need to use more than 10 words, consider putting that information into the abstract, methods, or additional information sections. Again, make sure these are in the same order as the files they are describing. +```{r data_descriptions} +data_descriptions <- c("TEST_Everglades Vegetation Map Accuracy Assessment point data", + "TEST_Everglades Vegetation Map Accuracy Assessment vegetation data") +``` + +#### Placeholder URL for data files +EMLassemblyline needs to know where the data files will be (a URL). However, because you have not yet initiated a draft reference in DataStore, it isn't possible to specify a URL. Instead, insert a place holder. Don't worry - this information will be updated later on when you add a Digital Object Identifier(DOI) to the metadata. +```{r temp_data_url} +data_urls <- c(rep("temporary URL", length(data_files))) +``` + +#### Taxonomic information +Specify where you taxonomic information is. this can be a single file or a list of files and fields (columns) with scientific names that will be used to automatically generate the taxonomic coverage metadata. We suggest using [DarwinCore](https://dwc.tdwg.org/terms) for column names, such as "scientificName". If your data package does not have taxonomic data, skip this step. +```{r taxonomic_info} +# the file(s) where scientific names are located: +data_taxa_tables <- "qry_Export_AA_VegetationDetails.csv" + +# the column where your scientific names are within the data files. +data_taxa_fields <- "scientific_Name" +``` + +#### Geographic information +Specify the tables and fields that contain geographic coordinates and site names. This information will be used to fill out the geographic coverage elements of the metadata. If your data package does not have geographic information skip this step. If the only geographic information you are supplying is the park units (and their bounding boxes) you can also skip this step; Park Units and the corresponding GPS coordinates for their bounding boxes will be added at a later step. If your coordinates are in UTMs and not GPS, try the [`convert_utm_to_ll()`](https://nationalparkservice.github.io/QCkit/reference/convert_utm_to_ll.html) function in the [QCkit package](https://nationalparkservice.github.io/QCkit/) +```{r geo_info} +data_coordinates_table <- "qry_Export_AA_points.csv" +data_latitude <- "decimalLatitude" +data_longitude <- "decimalLongitude" +data_sitename <- "Point_ID" +``` + +#### Temporal information +This should indicate collection date of the first and last data point in the data package (across all files) and does not include any planning, pre- or post-processing time. The format should be one that complies with the International Standards Organization's standard 8601. The recommended format for EML is: YYYY-MM-DD, where Y is the four digit year, M is the two digit month code (01 - 12 for example, January = 01), and D is the two digit day of the month (01 - 31). Using an alternate format or setting the date to the future will cause errors down the road! +```{r temp_info} +startdate <- ymd("2010-01-26") +enddate <- ymd("2013-01-04") +``` + +## EMLassemblyline Functions +The next set of functions are meant to be considered one by one and only run if applicable to a particular data package. The first year will typically see all of these run, but if the data format and protocol stay constant over time it may be possible to skip some in future years. Additionally some datasets may not have geographic or taxonomic component. + +#### FUNCTION 1 - Core Metadata Information +This function creates blank .txt template files for the abstract, additional information, custom units, intellectual rights, keywords, methods, and personnel. Be sure the edit the personnel text file in Excel as it has columns. Remember that the role "creator" is required! EMLassemblyline will also warn you if you do not include a "PI" role, but you can ignore the warning; this role is not required. Typically these files can be reused between years. + +The personnel.txt file can best be edited in excel. You must list at least one person with a "creator" role and one person with a "contact" role (you can list the same person twice for both.). Creators will be authors and included in the data package citation. You do not need to list anyone as the "PI" and can list as many additional people with custome roles as desired (e.g. "field technician", "laboratory assistant"). Each individual must have a surName. The electornicMailAddress is an email and the userId is the persons's [ORCID](https://orcid.org) (if they have one). List the ORCID as just the 16 digit string, do not include the https://orcid.org prefix (e.g. xxxx-xxxx-xxxx-xxxx). You can leave the projectTitle, fundingAgency, and fundingNumber blank. + +We encourage you to craft your abstract in a text editor, NOT Word. Your abstract will be forwarded to data.gov, DataCite, google dataset search, etc. so it is worth some time to carefully consider what is relevant and important information for an abstract. Abstracts must be greater than 20 words. Good abstracts tend to be 250 words or less. You may consider including the following information: The premise for the data collection (why was it done?), why is it important, a brief overview of relevant methods, and a brief explanation of what data are included such as the period of time, location(s), and type of data collected. Keep in mind that if you have lengthy descriptions of methods, provenance, data QA/QC, etc it may be better to expand upon these topics in a Data Release Report or similar document uploaded separately to DataStore. + +Currently this function inserts a Creative Common 0 license. The CC0 license will need to be updated. However, to ensure that the licence meets NPS specifications and properly coincides with CUI designations, the best way to update the license information is during a later step using `EMLeditor::set_int_rights()`. There is no need to edit this .txt file. +```{r core} +EMLassemblyline::template_core_metadata(path = working_folder, + license = "CC0") # that '0' is a zero! +``` + +#### FUNCTION 2 - Data Table Attributes +This function creates an "attributes_datafilename.txt" file for each data file. This can be opened in Excel (we recommend against trying to update these in a text editor) and fill in/adjust the columns for attributeDefinition, class, unit, etc. refer to https://ediorg.github.io/EMLassemblyline/articles/edit_tmplts.html for helpful hints and `view_unit_dictionary()` for potential units. This will only need to be run again if the attributes (name, order or new/deleted fields) are modified from the previous year. NOTE that if these files already exist from a previous run, they are not overwritten. +```{r attributes} +EMLassemblyline::template_table_attributes(path = working_folder, + data.table = data_files, + write.file = TRUE) +``` + +#### FUNCTION 3 - Data Table Categorical Variable +This function Creates a "catvars_datafilename.txt" file for each data file that has columns with a class = categorical. These .txt files will include each unique 'code' and allow input of the corresponding 'definition'.NOTE that since the list of codes is harvested from the data itself, it's possible that additional codes may have been relevant/possible but they are not automatically included here. Consider your lookup lists carefully to see if additional options should be included (e.g if your dataset DPL values are all set to "Accepted" this function will not include "Raw" or "Provisional" in the resulting file and you may want to add those manually). NOTE that if these files already exist from a previous run, they are not overwritten. +```{r cat_vars} +EMLassemblyline::template_categorical_variables(path = working_folder, + data.path = working_folder, + write.file = TRUE) +``` + +#### FUNCTION 4 - Geographic Coverage +If the only geographic coverage information you plan on using are park boundaries, you can skip this step. You can add park unit connections using EMLeditor, which will automatically generate properly formatted GPS coordinates for the park bounding boxes. + +If you would like to add additional GPS coordinates (such as for specific site +locations, survey plots, or bounding boxes for locations within a park, etc) please do. + +This function creates a geographic_coverage.txt file that lists your sites as points as long as your coordinates are in lat/long. If your coordinates are in UTM it is probably easiest to convert them first or create the geographic_coverage.txt file another way (see [QCkit](https://nationalparkservice.github.io/QCkit/) for R functions that will convert UTM to lat/long). +```{r geo_cov} +EMLassemblyline::template_geographic_coverage(path = working_folder, + data.path = working_folder, + data.table = data_coordinates_table, + lat.col = data_latitude, + lon.col = data_longitude, + site.col = data_sitename, + write.file = TRUE) +``` + +#### FUNCTION 5 - Taxonomic Coverage +This function creates a taxonomic_coverage.txt file if you have taxonomic data. Currently supported authorities are 3 = ITIS, 9 = WORMS, and 11 = GBIF. In the example below, the function will first try to find the scientific name at ITIS and if it fails will then look at GBIF. If you have lots of taxa, this could take some time to complete. +```{r tax_cov} +EMLassemblyline::template_taxonomic_coverage(path = working_folder, + data.path = working_folder, + taxa.table = data_taxa_tables, + taxa.col = data_taxa_fields, + taxa.authority = c(3,11), + taxa.name.type = 'scientific', + write.file = TRUE) +``` + +## Create an EML File +Run this (it may take a little while) and see if it validates (you should see 'Validation passed'). It will generate an R object called "my_metadata". The function could alert you of some issues to review as. Run the function `issues()` at the end of the process to get feedback on items that might be missing or need attention. Fix these issues and then re-run the `make_eml()` function. +```{r make_eml} +my_metadata <- EMLassemblyline::make_eml(path = working_folder, + dataset.title = package_title, + data.table = data_files, + data.table.name = data_names, + data.table.description = data_descriptions, + data.table.url = data_urls, + temporal.coverage = c(startdate, enddate), + maintenance.description = data_type, + package.id = metadata_id, + return.obj = TRUE, + write.file = FALSE) +``` + +## Check for EML validity +This is a good point to pause and test whether your EML is valid. +```{r validate} +EML::eml_validate(my_metadata) +``` + +if your EML is valid you should see the following (admittedly cryptic) result: +``` +# [1] TRUE +# attr(,"errors") +# character(0) +``` + +if your EML is not schema valid, the function will notify you of specific problems you need to address. We HIGHLY recommend that you use the EMLassemblyline and/or EMLeditor functions to fix your EML and do not attempt to edit it by hand. + +## Add NPS specific fields to EML +Now that you have valid EML metadata, you need to add NPS-specific elements and fields. For instance, unit connections, DOIs, referencing a DRR, etc. More information about these functions can be found at: [https://nationalparkservice.github.io/EMLeditor/](https://nationalparkservice.github.io/EMLeditor/). + +#### Add Controlled Unclassified Information (CUI) codes +This is a required step. It is important to indicate not only that your data +package contains CUI, but also to inform users if your data package does NOT +contain CUI because empty fields can be ambiguous (does it not contain CUI or +did the creators just miss that step?). You can choose from one of five CUI +dissemination codes. Watch out for the spaces! These are: + * PUBLIC - Does NOT contain CUI. + * FED ONLY - Contains CUI. Only federal employees should have access (similar to "internal only" in DataStore). + * FEDCON - Contains CUI. Only federal employees and federal contractors should have access (also very much like current "internal only" setting in DataStore). + * DL ONLY - Contains CUI. Should only be available to a named list of individuals (where and how to list those individuals TBD) + * NOCON - Contains CUI. Federal, state, local, or tribal employees may have access, but contractors cannot. +More information about these codes can be found at: [https://www.archives.gov/cui/registry/limited-dissemination](https://www.archives.gov/cui/registry/limited-dissemination) + +```{r cui_dissemination} +my_metadata <- EMLeditor::set_cui(my_metadata, "PUBLIC") +# note that in this case I have added the CUI code to the original R object, +# "my_metadata" but by giving it a new name, i.e. "my_meta2" I could have +# created a new R object. Sometimes creating a new R object is preferable +# because if you make a mistake you don't need to start over again. +``` + +## Intellectual Rights +EMLassemblyine and ezEML provide some attractive looking boilerplate for setting the intellectual rights. It looks reasonable and so is easy to just keep. However, NPS has some specific regulations about what can and cannot be in the intellectualRights tag. Use `set_int_rights()` to replace the text with NPS-approved text. Note: You must first add the CUI dissemination code using `set_cui()` as the dissemination code and license must agree. That is, you cannot give a data package with a PUBLIC dissemination code a "restricted" license (and vise versa: a restricted data package that contains CUI cannot have a public domain or CC0 license). You can choose from one of three options: + * "restricted": If the data contains Controlled Unclassified Information (CUI), the intellectual rights must read: **"This product has been determined to contain Controlled Unclassified Information (CUI) by the National Park Service, and is intended for internal use only. It is not published under an open license. Unauthorized access, use, and distribution are prohibited."** + + * "public": If the data do not contain CUI, the default is the public domain. The intellectual rights must read: **"This work is in the public domain. There is no copyright or license."** + + * "CC0": If you need a license, for instance if you are working with a partner organization that requires a license, use CC0: **"The person who associated a work with this deed has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission."** + +The `set_int_rights()` function will also put the name of your license in a field in EML for DataStore harvesting. + +```{r int_rights} +# choose from "restricted", "public" or "CC0" (zero), see above: +my_metadata <- EMLeditor::set_int_rights(my_metadata, "public") +``` + +#### Add a data package DOI +Add your data package's Digital Object Identifier (DOI) to the metadata. The `set_datastore_doi()` initiates a draft data package reference on DataStore, and populates the reference with a title pulled from your metadata, “[DRAFT] : ”. This temporary title is purely for your tracking purposes and can easily be updated later. The `set_datastore_doi()` function will then insert the corresponding DOI for your data package into your metadata. Now that a draft reference has been initiated on DataStore, it is possible to fill in the online URL for each data file. `set_datastore_doi()` automatically does that for you too. There are a few things to keep in mind: + 1) Your DOI and the data package reference are not yet active and are not publicly accessible until after review and activation/publication. + 2) We suggest you NOT manually upload files. If you manually upload your files, be sure to upload your data package to the correct draft reference! It is easy to create several draft references with the same draft title but different DataStore reference IDs and DOIs. So check the reference ID number carefully + 3) There is no need to fill in additional fields in DataStore at this point - many of them will be auto-populated based on the metadata you upload. Any fields you do populate will be over-written by the content in your metadata. +```{r DS_doi} +my_metadata <- EMLeditor::set_datastore_doi(my_metadata) +``` + +#### Add information about a DRR (optional) +If you are producing (or plan to produce) a DRR, add links to the DRR describing the data package. + +You will need the DOI for the DRR you are drafting as well as the DRR's Title. Go to DataStore and initiate a draft DRR, including a title. For the purposes of the data package, there is no need to populate any other fields. At this point, you do not need to activate the DRR reference and, while a DOI has been reserved for your DRR, +it will not be activated until after publication so that you have plenty of +time to construct the DRR. +```{r DRR_links} +my_metadata <- EMLeditor::set_drr(my_metadata, 7654321, "DRR Title") +``` + +#### Set the language +This is the human language (as opposed to computer language) that the data package and metadata are constructed in. Examples include English, Spanish, Navajo, etc. A full list of available languages is available from the Libraryof Congress. Please use the "English Name of Language" as an input. The function will then convert your input to the appropriate 3-character ISO 639-2 code.Available languages: [https://www.loc.gov/standards/iso639-2/php/code_list.php](https://www.loc.gov/standards/iso639-2/php/code_list.php) +```{r language} +my_metadata <- EMLeditor::set_language(my_metadata, "English") +``` +#### Add content unit links +These are the park units where data were collected from, for instance ROMO, not ROMN. If the data package includes data from more than one park, they can all be listed. For instance, if data were collected from all park units within a network, each unit should be listed separately rather than the network. This is because the geographic coordinates corresponding to bounding boxes for each park unit listed will automatically be generated and inserted into the metadata. Individual park units will be more informative than the bounding box for the entire network. +```{r content_units} +park_units <- c("ROMO", "GRSA", "YELL") +my_metadata <- EMLeditor::set_content_units(my_metadata, park_units) +``` + +#### Add the Producing Unit(s) +This is the unit(s) responsible for generating the data package. It may be a single park (ROMO) or a network (ROMN). It may be identical to the units listed in the previous step, overlapping, or entirely different. +```{r prod_units} +# a single producing unit: +my_metadata <- EMLeditor::set_producing_units(my_metadata, "ROMN") +# alternatively, a list of producing units: +my_metadata <- set_producing_units(my_metadata, c("ROMN", "GRYN")) +``` + +## Validate your EML +Almost done! This is another great time to validate your EML and make sure +Everything is schema valid. Run: +```{r val_eml} +EML::eml_validate(my_metadata) +``` +if your EML is valid you should see the following (admittedly crypitic): +# [1] TRUE +# attr(,"errors") +# character(0) + +if your EML is not schema valid, the function will notify you of specific problems you need to address. We HIGHLY recommend that you use the EMLassemblyline and/or EMLeditor functions to fix your EML and do not attempt to edit it by hand. + +## Write your EML to an xml file +Now it's time to convert your R object to an .xml file and save it. Keep in mind that the file name should end with "_metadata.xml". +```{r write_eml} +EML::write_eml(my_metadata, "mymetadatafilename_metadata.xml") +``` + +## Check your .xml file +You're EML metadata file should be ready for upload. You can run some additional tests on your .xml metadata file using `check_eml()`. This function assumes there is only one .xml file in the directory: +```{r check_eml} +# This assumes that you have written your metadata to an .xml file and that the .xml file is in the current working directory. +EMLeditor::check_eml() + +# If you .xml file with metadata is in a different directory, you will have to specify that: +#check_eml("C:/Users//Documents/your_data_package") +``` + +## Check your data package +If your data package is now complete, you can run some test prior to upload to make sure that the package fits some minimal set of requirements and that the data and metadata are properly specified and coincide. This assumes that your data package is in the root of your R project. +```{r congruence_tests} +# this assumes that the data package is the working directory +DPchecker::run_congruence_checks() + +# if your data package is somewhere else, specify that: +# run_congruence_checks("C:/Users//Documents/my_data_package") +``` + + +## Upload your data package +If everything checked out, you should be ready to upload your data package! We recommend using `upload_data_package()` to accomplish this. The function automatically checks your DOI and uploads to the correct reference on DataStore. All of your files for the data package need to be in the same folder, there can be only one .xml file (ending in "_metadata.xml") and all the other files should be data files in .csv format. Each individual file should be < 32Mb. If you have files > 32Mb, you will need to upload them manually using the web interface on DataStore. +```{r upload} +# this assumes your data package is in the current working directory +EMLeditor::upload_data_package() + +# If your data package is somewhere else, specify that: +#upload_data_package("C:/Users//Documents/my_data_package) +``` + +From within DataStore you should be able to extract all the information from the metadata file to populate the relevant DataStore fields. In the upper right, select "Edit" from the drop down menu. Then click on the "Files and Links" tab. On the left side of the files list, select the radio button corresponding to your metadata. Then click the "Extract Metadata" button from the top right of box with the files listed in it. + +Please don't activate your reference just yet! Data package references need to be reviewed prior to activation. We are still working on what that review process will look like. diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/template.yaml b/inst/rmarkdown/templates/nps-data-release-report-template/template.yaml new file mode 100644 index 0000000..ecf68e2 --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/template.yaml @@ -0,0 +1,4 @@ +name: NPS Data Release Report Template +description: > + A description of the template +create_dir: FALSE diff --git a/inst/rmarkdown/templates/template.yaml b/inst/rmarkdown/templates/template.yaml deleted file mode 100644 index 01bd841..0000000 --- a/inst/rmarkdown/templates/template.yaml +++ /dev/null @@ -1,4 +0,0 @@ -name: Editable_EML_Creation_Workflow -description: > - Template for generating EML metadata -create_dir: FALSE From c859db3cd37f15c91b2eb481425cb8a4164fb352 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 7 Feb 2024 14:46:01 -0700 Subject: [PATCH 03/33] file setup for DRR template --- .../skeleton/national-park-service-DRR.csl | 189 +++++ .../skeleton/references.bib | 8 + .../skeleton/skeleton.Rmd | 784 +++++++++++------- 3 files changed, 695 insertions(+), 286 deletions(-) create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl new file mode 100644 index 0000000..47a8d46 --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl @@ -0,0 +1,189 @@ + + diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib new file mode 100644 index 0000000..1a69c4f --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib @@ -0,0 +1,8 @@ +@article{Scott1994, + title={EXAMPLE CITATION: Standard techniques for inventory and monitoring}, + author={Scott, NJ and Crump, ML and Zimmerman, BL and Jaeger, RG and Inger, RF and Corn, PS and Woodward, BD and Dodd, CK and Scott, DE and Shaffer, HB and others}, + journal={Measuring and monitoring biological diversity: Standard methods for amphibians}, + year={1994}, + publisher={Smithsonian Institution Press} +} + diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd index dfb4e01..e042a59 100644 --- a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd @@ -1,348 +1,560 @@ --- -title: "NPS EML Creation Workflow" -author: "Robert Baker" -date: "The Date" -output: html +output: + word_document: default + pdf_document: default +bibliography: references.bib +csl: national-park-service-DRR.csl --- -```{r setup, include=FALSE} -knitr::opts_chunk$set(echo = TRUE) +```{=html} + ``` +```{r user_edited_parameterss, include=FALSE} +# The title of your DRR. Should all DRR start with "Data Release Report:"? Should we enforce titles specifically referencing the data package(s) they the report is about? +title <- "DRR Title" -# Summary -This script acts as a template file for end-to-end creation of EML metadata in R for DataStore. The metadata generated will be of sufficient quality for the data package Reference Type and can be used to automatically populate the DataStore fields for this reference type. The script utilizes multiple R packages and the example inputs are for an EVER Veg Map AA dataset. The example script is meant to either be run as a test of the process or to be replaced with your own content. This is a step by step process where each section should be reviewed, edited if necessary, and run one at a time. After completing a section there is often something to do external to R (e.g. open a text file and add content). Several EMLassemblyline functions are decision points and may only apply to certain data packages. This workflow takes advantage of the NPSdataverse, an R-based ecosystem that includes external EML creation tools such as the R packages EMLassemblyline and EML. However, these tools were not designed to work with DataStore. Therefore, the NPSdatavers and this workflow also incorporate steps from NPS-developed R packages such as EMLeditor and DPchecker. You will necessarily over-write some of the information generated by EMLassemblyline. That is OK and is expected behavior. +# Optional and should only be included if publishing to the semi-official DRR series. Contact Joe if you are. If not, leave as NULL +reportNumber <- ": get this number from Joe DeVivo" -# Good additional references -[EMLassemblyline](https://ediorg.github.io/EMLassemblyline/) -[EMLeditor](https://nationalparkservice.github.io/EMLeditor/index.html) -[EVER Veg Map AA dataset](https://github.com/nationalparkservice/NPS_EML_Script/tree/main/Example_files) (for testing purposes) +# This should match the Data Store Reference ID for this DRR. Eventually we should be able to pull this directly from the data package metadata. +DRR_DSRefID <- 7654321 -# Install and Load R Packages -Install packages. If you have not recently installed packages, please re-install them. You will want to make sure you have the latest versions of all the NPSdataverse packages - QCkit, EMLeditor, DPchecker, and NPSutils - as they are under constant development. If you are on the VPN, you will need to set your CRAN mirror to Texas 1. If you run into errors installing packages from github on NPS computers you may first need to run: -```{r renviron, eval=FALSE} -options(download.file.method="wininet") -``` -```{r package_install, eval=FALSE} -#install packages -install.packages(c("devtools", "tidyverse")) -devtools::install_github("nationalparkservice/NPSdataverse") -``` -```{r load_packages} -# When loading packages, you may be advised to update to more recent versions -# of dependent packages. Most of these updates likely are not critical. -# However, it is important that you update to the latest versions of QCkit, -# EMLeditor, DPchecker and NPSutils as these NPS packages are under constant -# development. -library(NPSdataverse) -library(tidyverse) -``` +#Author names and affiliations: -## Set the overall package details -All of the following items should be reviewed and updated to fit the package you are working on. For lists of more than one item, keep the same order (i.e. item #1 should correspond to the same file in each list). +#One way to think of the author information is that you are building a table: -#### Metadata filename -This becomes the file name of your .xml file. Be sure it ends in _metadata to comply with data package specifications. You do not need to include the extension (.xml). -```{r metadata_id} -metadata_id <- "Test_EVER_AA_metadata" -``` +# Author | Affiliation | ORCID +# Jane | Institute 1 | 0000-1111-2222-3333 +# Jane | Institute 2 | 0000-1111-2222-3333 +# John | Institute 2 | NA -#### Package Title -Give the data package a title. FAIR principles suggest titles of between 7 and 20 words. Be sure to make your title informative and consider how a naive user would interpret it. -```{r package_title} -package_title <- "TEST_Everglades National Park Accuracy Assessment (AA) Data Package" -``` +#once the table is built, authors can be associated with the appropriate institute via relevant superscripts and the institutes can be listed only once in the DRR. -#### Data collection status -Choose from either "ongoing" or "complete" -```{r data_status} -data_type <- "complete" -``` +# list the authors. If an author has multiple institutional affiliations, you must list the author multiple times. In this example, Jane Doe is listed twice because she has two affiliations. +authorNames <- c( + "Jane Doe", + "Jane Doe", + "John Doe" +) -#### Path to data file(s) -Tell R where your data files are. If they are in the working directory, you can set the working_folder to `getwd()`. If they are in a different directory you will need to specify that directory. -```{r working_dir} -working_folder <- getwd() -# or: -# working_folder <- setwd("C:/users//Documents/my_data_package_folder) -``` +# List author affiliations. The order of author affiliations must match the order of the authors in AuthorNames. If an author has multiple affiliations, the author must be listed 2 (or more) times under authorNames (above) and each affiliation should be listed in order. If authors share the same affiliation, the affiliation should be listed once for each author. In this case, Managed Business Solutions (MBS) is listed twice because it is associated with two authors. MBS will only print to the DRR once. -#### List data files -Tell R what your data files are called. -```{r list_files} -# if the data files are in your working directory (and the only .csv files in your working directory are data files: -data_files <- list.files(pattern = "*.csv") +#Note that the entirety of each affiliation is enclosed in quotations. Do not worry about indentation or word wrapping. +authorAffiliations <- c( + "NPS Inventory and Monitoring Division, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", + "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado", + "Managed Business Solutions (MBS), a Sealaska Company, Contractor to the National Park Service, Natural Resource Stewardship and Science Directorate, 1201 Oakridge Dr., Suite 150, Fort Collins, Colorado" +) -# alternatively, you can list the files out manually: -#data_files <- c("qry_Export_AA_points.csv", -# "qry_Export_AA_VegetationDetails.csv") +# List the ORCID iDs for each author in the format "(xxxx-xxxx-xxxx-xxxx)". If an author does not have an ORCID iD, specify NA (no quotes). If an author is listed more than once (for instance because they have multiple institutional affiliations), the ORCID iD must also be listed more than once. For more information on ORCID iDs and to register an ORCID iD, see https://www.orcid.org. + +#The order of the ORCID iDs must match the order of authors in AuthorNames.In this example, Jane Doe has an ORCID iD but John Doe does not. Jane's ORCID iD is listed twice because she her name is listed twice in authorNames(because she has two authorAffiliations). +authorORCID <- c( + "(0000-1111-2222-3333)", "(0000-1111-2222-3333)", NA + ) + +# Replace the text below with your abstract. +DRRabstract <- "Abstract Should go here. Multiple Lines are okay; it'll format correctly. Pay careful attention to non-standard characters, line breaks (
), carriage returns, and curly-quotes. You may find it useful to write the abstract in NotePad++ or some other text editor and not a word processor (such as Microsoft Word).\n\n + +Note that if you need multiple paragraphs or line breaks you can generate them using a combination of backslashes and n's. \n\n + +The abstract should succinctly describe the study, the assay(s) performed, the resulting data, and their reuse potential, but should not make any claims regarding new scientific findings. No references are allowed in this section." + +# DataStore reference ID for the data package associated with this report. You must have at least one data package.Eventually, we will automate importing much of this information from metadata. +dataPackageRefID <- c(12342567) + +# Must match title in DataStore and metadata +dataPackageTitle <- "Data Package Title" + +# Must match descriptions in the data package metadata +dataPackageDescription <- "Short title for data package1" + +# generates your data package DOI based on the data package DataStore reference ID. This is different from the DRR DOI! No need to edit this. +dataPackageDOI <- paste0("https://doi.org/10.57830/", dataPackageRefID) + +# list the file names in your data package. Do NOT include metadata files. +dataPackage_fileNames <- c( + "my_data.csv", + "my_data2.csv" +) + +# list the approximate size of each data file. Make sure the order corresponds to the order of of the file names in dataPackage_fileNames +dataPackage_fileSizes <- c("0.8 MB", "10 GB") + +# list a short, one-line description of each data file. Descriptions must be in the same order as the filenames. +dataPackage_fileDescript <- c( + "This is a short description of my_data.csv (a good guideline is 10 words or less).", + "This is a short description of my_data2.csv.") +``` + +```{r setup_do_not_edit, include=FALSE} +RRpackages <- c("markdown", + "rmarkdown", + "pander", + "knitr", + "yaml", + "kableExtra", + "devtools", + "tidyverse") + +inst <- RRpackages %in% installed.packages() +if (length(RRpackages[!inst]) > 0) { + install.packages(RRpackages[!inst], dep = TRUE, repos = "https://cloud.r-project.org") +} +lapply(RRpackages, library, character.only = TRUE) + +devtools::install_github("EmilyMarkowitz-NOAA/NMFSReports") +library(NMFSReports) +devtools::install_github("nationalparkservice/QCkit") +library(QCkit) +``` + +*`r (paste0("https://doi.org/10.38750/", DRR_DSRefID))`* + +```{r title_do_not_edit, echo=FALSE, results="asis"} +date <- format(Sys.time(), "%d %B, %Y") +cat("#", title, "\n") +if (!is.null(reportNumber)) { + subtitle <- paste0("Data Release Report ", reportNumber) + cat("###", subtitle) +} +``` + +```{r authors_do_not_edit, echo=FALSE, results="asis"} +author_list <- data.frame(authorNames, authorAffiliations, authorORCID) +unique_authors <- author_list %>% distinct(authorNames, + .keep_all = TRUE) +unique_affiliation <- author_list %>% distinct(authorAffiliations, + .keep_all = TRUE) + +#single author documents: +if(length(seq_along(unique_authors$authorNames)) == 1){ + + for (i in seq_along(unique_authors$authorNames)) { + curr <- unique_authors[i, ] + + #find all author affiliations + aff <- author_list[which(authorNames == curr$authorNames),] + aff <- aff$authorAffiliations + + #identify order of affiliation(s) in a unique list of affiliations + #build the superscripts for author affiliations + super_script <- unique_affiliation$authorAffiliations %in% aff + super <- which(super_script == TRUE) + script <- super + + if(length(seq_along(super)) > 1){ + script <- NULL + j <- 1 + while(j < length(seq_along(super))){ + script <- append(script, paste0(super[j],",")) + j <- j+1 + } + if(j == length(seq_along(super))){ + script <- append(script, super[j]) + } + } + } + cat("#### ", curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, "") + cat({{ orc }}) + } + cat(" ^",script,"^", " ", " ", sep="") + + #cat("#### ", unique_authors$authorNames, "^1^", sep="") + #if(!is.na(authorORCID)){ + # orc <- paste0(" https://orcid.org/", unique_authors$authorORCID) + # cat({{ orc }}, "\n") + #} + #cat("#### ", unique_authors$authorAffiliations, sep="") +} + +#multi author documents: +if(length(seq_along(unique_authors$authorNames)) > 1){ + for (i in seq_along(unique_authors$authorNames)) { + curr <- unique_authors[i, ] + + #find all author affiliations + aff <- author_list[which(authorNames == curr$authorNames),] + aff <- aff$authorAffiliations + + #identify order of affiliation(s) in a unique list of affiliations + #build the superscripts for author affiliations + super_script <- unique_affiliation$authorAffiliations %in% aff + super <- which(super_script == TRUE) + script <- super + + if(length(seq_along(super)) > 1){ + script <- NULL + j <- 1 + while(j < length(seq_along(super))){ + script <- append(script, paste0(super[j],",")) + j <- j+1 + } + if(j == length(seq_along(super))){ + script <- append(script, super[j]) + } + } + + # if NOT the second-to-last author: + if(i < (length(seq_along(unique_authors$authorNames)) - 1)){ + cat("#### ", curr$authorNames, " ", sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat( " ^", script, "^", ", ", " ", sep = "") + } + + # if IS the second-to-last author + if(i == (length(seq_along(unique_authors$authorNames)) - 1)){ + + #if 3 or more authors, include a comma before the "and": + if(length(seq_along(unique_authors$authorNames)) > 2){ + cat(curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^",script,"^", ", ", sep="") + cat("and ", sep="") + } + + #If only 2 authors, omit comma before "and": + if(length(seq_along(unique_authors$authorNames)) == 2){ + cat("#### ", curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^",script,"^ ", sep = "") + cat("and ", sep="") + } + } + + # if IS the Last author : + if(i == length(seq_along(unique_authors$authorNames))){ + cat(curr$authorNames, sep="") + if (is.na(curr$authorORCID)) { + } + if (!is.na(curr$authorORCID)) { + orc <- paste0(" ", curr$authorORCID, " ") + cat({{ orc }}) + } + cat(" ^", script, "^", sep = "") + } + } +} +cat("\n\n") +for(i in 1:nrow(unique_affiliation)){ + cat("^",i,"^ ", unique_affiliation[i,2], "\n\n", sep="") + } +``` + +# Abstract + +`r DRRabstract` + +
+ +# Acknowledgements (optional) + +The Acknowledgements should contain text acknowledging non-author contributors. Acknowledgements should be brief, and should not include thanks to anonymous referees and editors or effusive comments. Grant or contribution numbers may be acknowledged. + +# Using citations in this document: + +To automate citations, add the citation to in bibtex format to the file "references.bib". You can manually copy and paste the bibtex for each reference in, or you can search for it from within Rstudio. From within Rstudio, make sure you are editing this document using the "Visual" view (as opposed to "Source"). From the "Insert" drop-down menu, select "\@ Citation..." (shortcut: Cntrl-Shift-F8). This will open a tool where you can view all the citations in your reference.bib file as well as search multiple databases for references, automatically insert the bibtex for the reference into your references.bib file (and customize the unique identifier if you'd like) and insert the in-text citation into the DRR template. + +Once a reference is in your references.bib file, from within this template you can simply type the '\@' symbol and select which reference to insert in the text. + +If you need to edit how the citation is displayed after inserting it into the text, switch back to the "Source" view. Each bibtex citation should start with a unique identifier; the example reference in the supplied references.bib file has the unique identifier "\@article{Scott1994,". Using the "Source" view in Rstudio, insert the reference in your text, by combining the "at" symbol with the portion of the unique identifier after the curly bracket: @Scott1994 . You can put a citation in parentheses using square brackets: [@Scott1994]. This will be rendered as (Scott, et al. 1994) in text. You can add multiple authors works a single parenthetical citation by separating them with a semi-colon. You can suppress the author and cite just the year by using a - symbol before the \@ : [-@Scott1994]. + +If you would like to format your citations manually, please feel free to do that instead. Make sure to examine the References section for examples of how to manually format each citation type. + +# Data Records (required) + +## Data Inputs (optional) + +If the data package being described was generated based on one or more pre-existing datasets, cite those datasets here. + +## Summary of Datasets Created (required) + +The Data Records section should be used to explain each data record associated with this work (for instance, a data package), including the DOI indicating where this information is stored, and provide an overview of the data files and their formats. Each external data record should be cited. Below is some sample text: + +This DRR describes the data package *`r dataPackageTitle`* which contains a metadata file and `r length(dataPackage_fileNames)` data files. These data were compiled and processed for dissemination by the National Park Service Inventory and Monitoring Division (IMD) and are available at `r dataPackageDOI` (see Table 1). + +```{r FileTable, echo=FALSE} +filelist <- data.frame(dataPackage_fileNames, dataPackage_fileSizes, dataPackage_fileDescript) + +knitr::kable(filelist, caption = paste0("**Table 1. ", dataPackageTitle, ": List of data files.**"), col.names = c("**File Name**", "**Size**", "**Description**"), format = "pandoc") ``` -#### Name the data files -These should be relatively short, but perhaps more informative than the actual file names. Make sure that they are in the same order as the files in data_files. -```{r data_names} -data_names <- c("TEST_AA Point Location Data", - "TEST_AA Vegetation Coverage Data") -``` +See Appendix for additional notes and examples. -#### Describe each data file. Data file descriptions should be unique and about 10 words long. Descriptions will be used in auto-generated tables within the ReadMe and DRR. If you need to use more than 10 words, consider putting that information into the abstract, methods, or additional information sections. Again, make sure these are in the same order as the files they are describing. -```{r data_descriptions} -data_descriptions <- c("TEST_Everglades Vegetation Map Accuracy Assessment point data", - "TEST_Everglades Vegetation Map Accuracy Assessment vegetation data") -``` +# Data Quality Evaluation (required) -#### Placeholder URL for data files -EMLassemblyline needs to know where the data files will be (a URL). However, because you have not yet initiated a draft reference in DataStore, it isn't possible to specify a URL. Instead, insert a place holder. Don't worry - this information will be updated later on when you add a Digital Object Identifier(DOI) to the metadata. -```{r temp_data_url} -data_urls <- c(rep("temporary URL", length(data_files))) -``` +The Data Quality Evaluation section should present any analyses that are needed to support the technical quality of the dataset. This section may be supported by figures and tables, as needed. *This is a required section*; authors must provide information to justify the reliability of their data. Wherever possible & appropriate, data quality evaluation should be presented in the context of data standards and quality control procedures as prescribed in the project's quality assurance planning documentation. -#### Taxonomic information -Specify where you taxonomic information is. this can be a single file or a list of files and fields (columns) with scientific names that will be used to automatically generate the taxonomic coverage metadata. We suggest using [DarwinCore](https://dwc.tdwg.org/terms) for column names, such as "scientificName". If your data package does not have taxonomic data, skip this step. -```{r taxonomic_info} -# the file(s) where scientific names are located: -data_taxa_tables <- "qry_Export_AA_VegetationDetails.csv" +**Required elements for this section** -# the column where your scientific names are within the data files. -data_taxa_fields <- "scientific_Name" -``` +*Required Table* -#### Geographic information -Specify the tables and fields that contain geographic coordinates and site names. This information will be used to fill out the geographic coverage elements of the metadata. If your data package does not have geographic information skip this step. If the only geographic information you are supplying is the park units (and their bounding boxes) you can also skip this step; Park Units and the corresponding GPS coordinates for their bounding boxes will be added at a later step. If your coordinates are in UTMs and not GPS, try the [`convert_utm_to_ll()`](https://nationalparkservice.github.io/QCkit/reference/convert_utm_to_ll.html) function in the [QCkit package](https://nationalparkservice.github.io/QCkit/) -```{r geo_info} -data_coordinates_table <- "qry_Export_AA_points.csv" -data_latitude <- "decimalLatitude" -data_longitude <- "decimalLongitude" -data_sitename <- "Point_ID" -``` +```{r dataAcceptanceCriteria, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table of acceptance criteria for each of the data quality fields in your data package. Mitigations taken when data did not meet the acceptance criteria should be described textually in the Data Quality Evaluation section. -#### Temporal information -This should indicate collection date of the first and last data point in the data package (across all files) and does not include any planning, pre- or post-processing time. The format should be one that complies with the International Standards Organization's standard 8601. The recommended format for EML is: YYYY-MM-DD, where Y is the four digit year, M is the two digit month code (01 - 12 for example, January = 01), and D is the two digit day of the month (01 - 31). Using an alternate format or setting the date to the future will cause errors down the road! -```{r temp_info} -startdate <- ymd("2010-01-26") -enddate <- ymd("2013-01-04") -``` +# Specify which columns in your data package are data quality fields in the dataQualityFields variable. In the example below, data quality fields/columns in the data package are listed in the format [FieldName]_flag. These data quality fields relate to the respective temporal, taxonomic, and geographic data. -## EMLassemblyline Functions -The next set of functions are meant to be considered one by one and only run if applicable to a particular data package. The first year will typically see all of these run, but if the data format and protocol stay constant over time it may be possible to skip some in future years. Additionally some datasets may not have geographic or taxonomic component. +dataQualityFields <- c( + "eventDate_flag", + "scientificName_flag", + "coordinate_flag" + ) -#### FUNCTION 1 - Core Metadata Information -This function creates blank .txt template files for the abstract, additional information, custom units, intellectual rights, keywords, methods, and personnel. Be sure the edit the personnel text file in Excel as it has columns. Remember that the role "creator" is required! EMLassemblyline will also warn you if you do not include a "PI" role, but you can ignore the warning; this role is not required. Typically these files can be reused between years. +# Brief description of the acceptance criteria for each respective data quality field. The order of the acceptance criteria must match the order of the data quality fields. -The personnel.txt file can best be edited in excel. You must list at least one person with a "creator" role and one person with a "contact" role (you can list the same person twice for both.). Creators will be authors and included in the data package citation. You do not need to list anyone as the "PI" and can list as many additional people with custome roles as desired (e.g. "field technician", "laboratory assistant"). Each individual must have a surName. The electornicMailAddress is an email and the userId is the persons's [ORCID](https://orcid.org) (if they have one). List the ORCID as just the 16 digit string, do not include the https://orcid.org prefix (e.g. xxxx-xxxx-xxxx-xxxx). You can leave the projectTitle, fundingAgency, and fundingNumber blank. +dataQualityAcceptanceCriteria <- c( + "Sampling event date within the start and end dates of the project", + "Taxon exists within Integrated Taxonomic Information System and GBIF", + "Sampling location is within the park unit boundaries" + ) -We encourage you to craft your abstract in a text editor, NOT Word. Your abstract will be forwarded to data.gov, DataCite, google dataset search, etc. so it is worth some time to carefully consider what is relevant and important information for an abstract. Abstracts must be greater than 20 words. Good abstracts tend to be 250 words or less. You may consider including the following information: The premise for the data collection (why was it done?), why is it important, a brief overview of relevant methods, and a brief explanation of what data are included such as the period of time, location(s), and type of data collected. Keep in mind that if you have lengthy descriptions of methods, provenance, data QA/QC, etc it may be better to expand upon these topics in a Data Release Report or similar document uploaded separately to DataStore. +data_criteria<-data.frame(dataQualityFields = str_remove(dataQualityFields, "_flag"), dataQualityAcceptanceCriteria) -Currently this function inserts a Creative Common 0 license. The CC0 license will need to be updated. However, to ensure that the licence meets NPS specifications and properly coincides with CUI designations, the best way to update the license information is during a later step using `EMLeditor::set_int_rights()`. There is no need to edit this .txt file. -```{r core} -EMLassemblyline::template_core_metadata(path = working_folder, - license = "CC0") # that '0' is a zero! -``` +data_criteria %>% + NMFSReports::format_cells(1:3, 1, "bold") %>% + knitr::kable(caption = "**Table 2. Acceptance criteria for data evaluated.**", col.names=c("**Field**", "**Acceptance Criteria**"), format="pandoc", align = 'c') -#### FUNCTION 2 - Data Table Attributes -This function creates an "attributes_datafilename.txt" file for each data file. This can be opened in Excel (we recommend against trying to update these in a text editor) and fill in/adjust the columns for attributeDefinition, class, unit, etc. refer to https://ediorg.github.io/EMLassemblyline/articles/edit_tmplts.html for helpful hints and `view_unit_dictionary()` for potential units. This will only need to be run again if the attributes (name, order or new/deleted fields) are modified from the previous year. NOTE that if these files already exist from a previous run, they are not overwritten. -```{r attributes} -EMLassemblyline::template_table_attributes(path = working_folder, - data.table = data_files, - write.file = TRUE) ``` -#### FUNCTION 3 - Data Table Categorical Variable -This function Creates a "catvars_datafilename.txt" file for each data file that has columns with a class = categorical. These .txt files will include each unique 'code' and allow input of the corresponding 'definition'.NOTE that since the list of codes is harvested from the data itself, it's possible that additional codes may have been relevant/possible but they are not automatically included here. Consider your lookup lists carefully to see if additional options should be included (e.g if your dataset DPL values are all set to "Accepted" this function will not include "Raw" or "Provisional" in the resulting file and you may want to add those manually). NOTE that if these files already exist from a previous run, they are not overwritten. -```{r cat_vars} -EMLassemblyline::template_categorical_variables(path = working_folder, - data.path = working_folder, - write.file = TRUE) -``` +```{r data_column_flagging, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table summarizing QC at the column level within each file. All flagged columns are included. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". -#### FUNCTION 4 - Geographic Coverage -If the only geographic coverage information you plan on using are park boundaries, you can skip this step. You can add park unit connections using EMLeditor, which will automatically generate properly formatted GPS coordinates for the park bounding boxes. - -If you would like to add additional GPS coordinates (such as for specific site -locations, survey plots, or bounding boxes for locations within a park, etc) please do. - -This function creates a geographic_coverage.txt file that lists your sites as points as long as your coordinates are in lat/long. If your coordinates are in UTM it is probably easiest to convert them first or create the geographic_coverage.txt file another way (see [QCkit](https://nationalparkservice.github.io/QCkit/) for R functions that will convert UTM to lat/long). -```{r geo_cov} -EMLassemblyline::template_geographic_coverage(path = working_folder, - data.path = working_folder, - data.table = data_coordinates_table, - lat.col = data_latitude, - lon.col = data_longitude, - site.col = data_sitename, - write.file = TRUE) -``` +#set directory to the location of your data package: +path <- "../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" +dc_flags <- QCkit::get_custom_flags(directory = path, output="columns") +dc_flags$`File Name` <- gsub(".csv", "", dc_flags$`File Name`) -#### FUNCTION 5 - Taxonomic Coverage -This function creates a taxonomic_coverage.txt file if you have taxonomic data. Currently supported authorities are 3 = ITIS, 9 = WORMS, and 11 = GBIF. In the example below, the function will first try to find the scientific name at ITIS and if it fails will then look at GBIF. If you have lots of taxa, this could take some time to complete. -```{r tax_cov} -EMLassemblyline::template_taxonomic_coverage(path = working_folder, - data.path = working_folder, - taxa.table = data_taxa_tables, - taxa.col = data_taxa_fields, - taxa.authority = c(3,11), - taxa.name.type = 'scientific', - write.file = TRUE) -``` -## Create an EML File -Run this (it may take a little while) and see if it validates (you should see 'Validation passed'). It will generate an R object called "my_metadata". The function could alert you of some issues to review as. Run the function `issues()` at the end of the process to get feedback on items that might be missing or need attention. Fix these issues and then re-run the `make_eml()` function. -```{r make_eml} -my_metadata <- EMLassemblyline::make_eml(path = working_folder, - dataset.title = package_title, - data.table = data_files, - data.table.name = data_names, - data.table.description = data_descriptions, - data.table.url = data_urls, - temporal.coverage = c(startdate, enddate), - maintenance.description = data_type, - package.id = metadata_id, - return.obj = TRUE, - write.file = FALSE) -``` +colnames(dc_flags)[2]<-paste0("Measure", "^1^") +colnames(dc_flags)[4]<-paste0("A", "^2^") +colnames(dc_flags)[8]<-paste0("% Accepted", "^3^") -## Check for EML validity -This is a good point to pause and test whether your EML is valid. -```{r validate} -EML::eml_validate(my_metadata) -``` +#Generate the table: +dc_flags %>% + knitr::kable( + caption = '**Table 3: Summary of data quality flags for each column [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', + format = "pandoc", + digits = 2, + align = 'c', + col.names = c("**File Name**", "**Measure^1^**", "**Number of Reocrds**", "**A^2^**", "**AE**", "**R**", "**P**", "**% Accepted^3^**")) %>% +kableExtra::add_footnote( + c("The '_flag' suffix has been omitted from column names for brevity.", + "All non-missing data in specified unflagged columns are considered accepted.", + "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), + notation = "number" + ) -if your EML is valid you should see the following (admittedly cryptic) result: -``` -# [1] TRUE -# attr(,"errors") -# character(0) ``` -if your EML is not schema valid, the function will notify you of specific problems you need to address. We HIGHLY recommend that you use the EMLassemblyline and/or EMLeditor functions to fix your EML and do not attempt to edit it by hand. - -## Add NPS specific fields to EML -Now that you have valid EML metadata, you need to add NPS-specific elements and fields. For instance, unit connections, DOIs, referencing a DRR, etc. More information about these functions can be found at: [https://nationalparkservice.github.io/EMLeditor/](https://nationalparkservice.github.io/EMLeditor/). - -#### Add Controlled Unclassified Information (CUI) codes -This is a required step. It is important to indicate not only that your data -package contains CUI, but also to inform users if your data package does NOT -contain CUI because empty fields can be ambiguous (does it not contain CUI or -did the creators just miss that step?). You can choose from one of five CUI -dissemination codes. Watch out for the spaces! These are: - * PUBLIC - Does NOT contain CUI. - * FED ONLY - Contains CUI. Only federal employees should have access (similar to "internal only" in DataStore). - * FEDCON - Contains CUI. Only federal employees and federal contractors should have access (also very much like current "internal only" setting in DataStore). - * DL ONLY - Contains CUI. Should only be available to a named list of individuals (where and how to list those individuals TBD) - * NOCON - Contains CUI. Federal, state, local, or tribal employees may have access, but contractors cannot. -More information about these codes can be found at: [https://www.archives.gov/cui/registry/limited-dissemination](https://www.archives.gov/cui/registry/limited-dissemination) - -```{r cui_dissemination} -my_metadata <- EMLeditor::set_cui(my_metadata, "PUBLIC") -# note that in this case I have added the CUI code to the original R object, -# "my_metadata" but by giving it a new name, i.e. "my_meta2" I could have -# created a new R object. Sometimes creating a new R object is preferable -# because if you make a mistake you don't need to start over again. +```{r data_package_flagging, echo=FALSE, eval=TRUE} +# To turn off, set eval=FALSE. +# Generates a table summarizing data quality across all flagged columns of each data file. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". + +#set directory to the location of your data package +path<-"../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" +dp_flags <- get_custom_flags(directory = path, output="files") + +#generate table: +dp_flags %>% + kableExtra::kbl(caption = '**Table 4: Summary of data quality flags for the data package [A – Accepted; AE – Accepted but Estimated; P – Provisional; R – Rejected.]**', + format = "pandoc", + col.names = c("**File Name**", "**A^1^**", "**AE**", "**R**", "**P**", "**% Accepted^2^**"), + digits=2, + align = 'c') %>% + kableExtra::add_footnote(c("All non-missing data in specified unflagged columns are considered accepted.", + "% Accepted is calculated as the number of accepted (where A and AE are both considered accepted) divided by the total number of observations plus the number of missing observations."), notation = "number") ``` -## Intellectual Rights -EMLassemblyine and ezEML provide some attractive looking boilerplate for setting the intellectual rights. It looks reasonable and so is easy to just keep. However, NPS has some specific regulations about what can and cannot be in the intellectualRights tag. Use `set_int_rights()` to replace the text with NPS-approved text. Note: You must first add the CUI dissemination code using `set_cui()` as the dissemination code and license must agree. That is, you cannot give a data package with a PUBLIC dissemination code a "restricted" license (and vise versa: a restricted data package that contains CUI cannot have a public domain or CC0 license). You can choose from one of three options: - * "restricted": If the data contains Controlled Unclassified Information (CUI), the intellectual rights must read: **"This product has been determined to contain Controlled Unclassified Information (CUI) by the National Park Service, and is intended for internal use only. It is not published under an open license. Unauthorized access, use, and distribution are prohibited."** +Possible content **strongly Suggested to Include** - * "public": If the data do not contain CUI, the default is the public domain. The intellectual rights must read: **"This work is in the public domain. There is no copyright or license."** +- Occurrence rates or patterns in data that do not meet established standards or data quality objectives. - * "CC0": If you need a license, for instance if you are working with a partner organization that requires a license, use CC0: **"The person who associated a work with this deed has dedicated the work to the public domain by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission."** +Possible content **may include:** -The `set_int_rights()` function will also put the name of your license in a field in EML for DataStore harvesting. +- experiments that support or validate the data-collection procedure(s) (e.g. negative controls, or an analysis of standards to confirm measurement linearity) +- statistical analyses of experimental error and variation +- general discussions of any procedures used to ensure reliable and unbiased data production, such as chain of custody procedures, blinding and randomization, sample tracking systems, etc. +- any other information needed for assessment of technical rigor by reviewers/users -```{r int_rights} -# choose from "restricted", "public" or "CC0" (zero), see above: -my_metadata <- EMLeditor::set_int_rights(my_metadata, "public") -``` +Generally, this **should not include:** -#### Add a data package DOI -Add your data package's Digital Object Identifier (DOI) to the metadata. The `set_datastore_doi()` initiates a draft data package reference on DataStore, and populates the reference with a title pulled from your metadata, “[DRAFT] : ”. This temporary title is purely for your tracking purposes and can easily be updated later. The `set_datastore_doi()` function will then insert the corresponding DOI for your data package into your metadata. Now that a draft reference has been initiated on DataStore, it is possible to fill in the online URL for each data file. `set_datastore_doi()` automatically does that for you too. There are a few things to keep in mind: - 1) Your DOI and the data package reference are not yet active and are not publicly accessible until after review and activation/publication. - 2) We suggest you NOT manually upload files. If you manually upload your files, be sure to upload your data package to the correct draft reference! It is easy to create several draft references with the same draft title but different DataStore reference IDs and DOIs. So check the reference ID number carefully - 3) There is no need to fill in additional fields in DataStore at this point - many of them will be auto-populated based on the metadata you upload. Any fields you do populate will be over-written by the content in your metadata. -```{r DS_doi} -my_metadata <- EMLeditor::set_datastore_doi(my_metadata) -``` +- follow-up experiments aimed at testing or supporting an interpretation of the data +- statistical hypothesis testing (e.g. tests of statistical significance, identifying deferentially expressed genes, trend analysis, etc.) +- exploratory computational analyses like clustering and annotation enrichment (e.g. GO analysis). -#### Add information about a DRR (optional) -If you are producing (or plan to produce) a DRR, add links to the DRR describing the data package. +*Stock Text to include:* -You will need the DOI for the DRR you are drafting as well as the DRR's Title. Go to DataStore and initiate a draft DRR, including a title. For the purposes of the data package, there is no need to populate any other fields. At this point, you do not need to activate the DRR reference and, while a DOI has been reserved for your DRR, -it will not be activated until after publication so that you have plenty of -time to construct the DRR. -```{r DRR_links} -my_metadata <- EMLeditor::set_drr(my_metadata, 7654321, "DRR Title") -``` +The data within the data records listed above have been reviewed by staff in the NPS Inventory and Monitoring Division to ensure accuracy, completeness, and consistency with documented data quality standards, as well as for usability and reproducibility (Table 3). Of the data that were evaluated for quality, XX.X% of fields in this data package met data quality standards. The *`r dataPackageTitle`* is suitable for its intended use as of the date of processing (`r Sys.Date()`). -#### Set the language -This is the human language (as opposed to computer language) that the data package and metadata are constructed in. Examples include English, Spanish, Navajo, etc. A full list of available languages is available from the Libraryof Congress. Please use the "English Name of Language" as an input. The function will then convert your input to the appropriate 3-character ISO 639-2 code.Available languages: [https://www.loc.gov/standards/iso639-2/php/code_list.php](https://www.loc.gov/standards/iso639-2/php/code_list.php) -```{r language} -my_metadata <- EMLeditor::set_language(my_metadata, "English") -``` -#### Add content unit links -These are the park units where data were collected from, for instance ROMO, not ROMN. If the data package includes data from more than one park, they can all be listed. For instance, if data were collected from all park units within a network, each unit should be listed separately rather than the network. This is because the geographic coordinates corresponding to bounding boxes for each park unit listed will automatically be generated and inserted into the metadata. Individual park units will be more informative than the bounding box for the entire network. -```{r content_units} -park_units <- c("ROMO", "GRSA", "YELL") -my_metadata <- EMLeditor::set_content_units(my_metadata, park_units) -``` +# Usage Notes (required) -#### Add the Producing Unit(s) -This is the unit(s) responsible for generating the data package. It may be a single park (ROMO) or a network (ROMN). It may be identical to the units listed in the previous step, overlapping, or entirely different. -```{r prod_units} -# a single producing unit: -my_metadata <- EMLeditor::set_producing_units(my_metadata, "ROMN") -# alternatively, a list of producing units: -my_metadata <- set_producing_units(my_metadata, c("ROMN", "GRYN")) -``` +The Usage Notes should contain brief instructions to assist other researchers with reuse of the data. This may include discussion of software packages (with appropriate citations) that are suitable for analysing the assay data files, suggested downstream processing steps (e.g. normalization, etc.), or tips for integrating or comparing the data records with other datasets. Authors are encouraged to provide code, programs or data-processing workflows if they may help others understand or use the data. -## Validate your EML -Almost done! This is another great time to validate your EML and make sure -Everything is schema valid. Run: -```{r val_eml} -EML::eml_validate(my_metadata) -``` -if your EML is valid you should see the following (admittedly crypitic): -# [1] TRUE -# attr(,"errors") -# character(0) +For studies involving privacy or safety controls on public access to the data, this section should describe in detail these controls, including how authors can apply to access the data, what criteria will be used to determine who may access the data, and any limitations on data use. -if your EML is not schema valid, the function will notify you of specific problems you need to address. We HIGHLY recommend that you use the EMLassemblyline and/or EMLeditor functions to fix your EML and do not attempt to edit it by hand. +## Acquiring the Data Package -## Write your EML to an xml file -Now it's time to convert your R object to an .xml file and save it. Keep in mind that the file name should end with "_metadata.xml". -```{r write_eml} -EML::write_eml(my_metadata, "mymetadatafilename_metadata.xml") -``` +This data package is available for download from the NPS DataStore at `r dataPackageDOI` and can be directly imported into R data frames using the NPSutils package -## Check your .xml file -You're EML metadata file should be ready for upload. You can run some additional tests on your .xml metadata file using `check_eml()`. This function assumes there is only one .xml file in the directory: -```{r check_eml} -# This assumes that you have written your metadata to an .xml file and that the .xml file is in the current working directory. -EMLeditor::check_eml() +# Methods -# If you .xml file with metadata is in a different directory, you will have to specify that: -#check_eml("C:/Users//Documents/your_data_package") -``` +Ideally these methods are identical to the methods listed in the metadata accompanying the data package that the DRR describes.Future versions of this template will pull directly from metadata. + +The Methods should cite previous methods under use but also be detailed enough describing data production including experimental design, data acquisition assays, and any computational processing (e.g. normalization, image feature extraction) such that others can understand the methods and processing steps without referring to associated publications. Cite and link to the DataStore reference for the protocol for detailed methods sufficient for reproducing the experiment or observational study. Related methods should be grouped under corresponding subheadings where possible, and methods should be described in enough detail to allow other researchers to interpret the full study. -## Check your data package -If your data package is now complete, you can run some test prior to upload to make sure that the package fits some minimal set of requirements and that the data and metadata are properly specified and coincide. This assumes that your data package is in the root of your R project. -```{r congruence_tests} -# this assumes that the data package is the working directory -DPchecker::run_congruence_checks() +Specific data inputs and outputs should be explicitly cited in the text and included in the References section below, following the same [Chicago Manual of Style author-date format](https://www.chicagomanualofstyle.org/tools_citationguide/citation-guide-2.html) in text. See the [USGS data citation guidelines](https://www.usgs.gov/data-management/data-citation) for examples of how to cite data in text and in the References section. -# if your data package is somewhere else, specify that: -# run_congruence_checks("C:/Users//Documents/my_data_package") +Authors are encouraged to consider creating a figure that outlines the experimental workflow(s) used to generate and analyse the data output(s) (Figure 1). + +```{r figure1, echo=FALSE, fig.cap="Example general workflow to include in the methods section."} +include_graphics("vignettes/common/ProcessingWorkflow.png") ``` +## Data Collection and Sample Processing Methods (optional) + +Include a description of field methods and sample processing + +## Additional Data Sources (optional) + +Provide descriptions (with citations) of other data sources used. + +## Data Processing (required if done) + +Summarize process and results of any QC processes done that manipulate, change, or qualify data. + +## Code Availability (required) + +For all studies using custom code in the generation or processing of datasets, a statement must be included indicating whether and how the code can be accessed and any restrictions to access. This section should also include information on the versions of any software used, if relevant, and any specific variables or parameters used to generate, test, or process the current dataset. Actual analytical code should be provided in Appendices. + +# References (required) + +Provide sufficient information to locate the resource. If the citation has a DOI, include the DOI at the end of the citation, including the prefix. If you are citing documents that have unregistered DOIs (such as a data package that you are working on concurrently) still include the DOI. Electronic resources data and data services or web sites should include the date they were accessed. Keep the following line of code if you would like to automate generating and formatting references: + +::: {#refs} +::: -## Upload your data package -If everything checked out, you should be ready to upload your data package! We recommend using `upload_data_package()` to accomplish this. The function automatically checks your DOI and uploads to the correct reference on DataStore. All of your files for the data package need to be in the same folder, there can be only one .xml file (ending in "_metadata.xml") and all the other files should be data files in .csv format. Each individual file should be < 32Mb. If you have files > 32Mb, you will need to upload them manually using the web interface on DataStore. -```{r upload} -# this assumes your data package is in the current working directory -EMLeditor::upload_data_package() +If you would like to manually format your references, delete the preceding two lines and use the following examples instead: Include bibliographic information for any works cited (including the data package the DRR is describing) in the above sections, using the standard *NPS NR Publication Series* referencing style. + +See the following examples: + +## Agency, Company, etc. as Author Examples + +Fung Associates Inc. and SWCA Environmental Consultants. 2010. Assessment of natural resources and watershed conditions for Kalaupapa National Historical Park. Natural Resource Report. NPS/NPRC/WRD/NRR—2010/261. National Park Service, Fort Collins, Colorado. + +Greater Yellowstone Whitebark Pine Monitoring Working Group. 2014. Monitoring whitebark pine in the Greater Yellowstone Ecosystem: 2013 annual report. Natural Resource Data Series. NPS/GRYN/NRDS—2014/631. National Park Service. Fort Collins, Colorado. + +National Park Service (NPS). 2016. State of the park report for Zion National Park. State of the Park Reports. No. 23. National Park Service. Washington, District of Columbia. + +U.S. Forest Service (USFS). 1993. ECOMAP. National hierarchical framework of ecological units. U. S. Forest Service, Washington, D.C. + +## Traditional Journal Article Examples + +Bradbury, J. W., S. L. Vehrencamp, K. E. Clifton, and L. M. Clifton. 1996. The relationship between bite rate and local forage abundance in wild Thompson’s gazelles. Ecology 77:2237–2255. + +Oakley, K. L., L. P. Thomas, and S. G. Fancy. 2003. Guidelines for long-term monitoring protocols. Wildlife Society Bulletin 31(4):1000–1003. + +Sawaya, M. A., T. K. Ruth, S. Creel, J. J. Rotella, J. B. Stetz, H. B. Quigley, and S. T. Kalinowski. 2011. Evaluation of noninvasive genetic sampling methods for cougars in Yellowstone National Park. The Journal of Wildlife Management 75(3):612–622. + +## Book Example + +Harvill, A. M., Jr., T. R. Bradley, C. E. Stevens, T. F. Wieboldt, D. M. E. Ware, D. W. Ogle, and G. W. Ramsey. 1992. Atlas of the Virginia flora, third edition. Virginia Botanical Associates, Farmville, Virginia. + +## Book Chapter Examples + +McCauly, E. 1984. The estimation of abundance and biomass of zooplankton in samples. Pages 228–265 in J. A. Dowling and F. H. Rigler, editors. A manual on methods for the assessment of secondary productivity in fresh waters. Blackwell Scientific, Oxford, UK. + +Watson, P. J. 2004. Of caves and shell mounds in west-central Kentucky. Pages 159–164 in Of caves and shell mounds. The University of Alabama Press, Tuscaloosa, Alabama. + +## Published Report Examples + +Bass, S., R. E. Gallipeau, Jr., M. Van Stappen, J. Kumer, M. Wessner, S. Petersburg, L. L. Hays, J. Milstone, M. Soukup, M. Fletcher, L. G. Adams, and others. 1988. Highlights of natural resource management 1987. National Park Service, Denver, Colorado. + +Holthausen, R. S., M. G. Raphael, K. S. McKelvey, E. D. Forsman, E. E. Starkey, and D. E. Seaman. 1994. The contribution of federal and nonfederal habitats to the persistence of the northern spotted owl on the Olympic Peninsula, Washington. General Technical Report PNW–GTR–352. U.S. Forest Service, Corvallis, Oregon. + +Jackson, L. L., and L. P. Gough. 1991. Seasonal and spatial biogeochemical trends for chaparral vegetation and soil geochemistry in the Santa Monica Mountains National Recreation Area. U.S. Geological Survey, Denver. Open File Report 91–0005. + +## Unpublished Report Examples + +Conant, B., and J. I. Hodges. 1995. Western brant population estimates. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. + +Conant, B., and J. F. Voelzer. 2001. Winter waterfowl survey: Mexico west coast and Baja California. U.S. Fish and Wildlife Service Unpublished Report, Juneau, Alaska. + +## Thesis/Dissertation Examples + +Diong, C. H. 1982. Population and biology of the feral pig (Sus scrofa L) in Kipahulu Valley, Mau’i. Dissertation. University of Hawai’i, Honolulu, Hawai’i. + +McTigue, K. M. 1992. Nutrient pulses and herbivory: Integrative control of primary producers in lakes. Thesis. University of Wisconsin, Madison, Wisconsin. + +## Conference Proceedings Examples + +Gunther, K. A. 1994. Changing problems in bear management: Yellowstone National Park twenty-plus years after the dumps. Ninth International Conference on Bear Research and Management. Missoula, MT, International Association for Bear Research and Management, Bozeman, Montana, February 1992:549–560. + +Webb, J. R., and J. N. Galloway. 1991. Potential acidification of streams in Mid-Appalachian Highlands: A problem with generalized assessments. Southern Appalachian Man and Biosphere Conference. Gatlinburg, Tennessee. + +## General Internet Examples + +Colorado Native Plant Society. 2016. Colorado Native Plant Society website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016a. IRMA Portal (Integrated Resource Management Applications) website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016b. Natural Resource Publications Management website. Available at: (accessed 07 March 2016). + +United Sates Fish and Wildlife Service (USFWS). 2016. Endangered Species website. Available at: (accessed 07 March 2016). + +## Online Data Warehouse Sites (sites that allow you see and download data from multiple sources) + +National Oceanographic and Atmospheric Association (NOAA). 2016. NOAA National Climatic Data Center website. Available at: (accessed 07 March 2016). + +Environmental Protection Agency (EPA). 2016. Storage and Retrieval Data Warehouse website (STORET). Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016c. NPScape Landscape Dynamics Metric Viewer website. Available at: (accessed 07 March 2016). + +National Park Service (NPS). 2016d. NPSpecies online application. Available at: (accessed 07 March 2016). + +United States Geologic Survey (USGS). 2016. BioData - Aquatic Bioassessment Data for the Nation. Available at: (accessed 07 March 2016). + +# Appendix A. Code Listing + +In most cases, Code listing is not required. If all QA/QC and data manipulations were performed elsewhere, you should cite that code in the methods (and leave the "Listing" code chunk as the default settings: eval=FALSE and echo=FALSE). If you have developed custom scripts, you can add those to DataStore with the reference type "Script" and cite them in the DRR. Some people have developed code to perform QA/QC or data manipulation within the DRR itself. In that case, you must set the "Listing" code chunk to eval=TRUE and echo=TRUE to fully document the QA/QC process. + +```{r Listing, ref.label=knitr::all_labels(), echo=TRUE, eval=TRUE} -# If your data package is somewhere else, specify that: -#upload_data_package("C:/Users//Documents/my_data_package) ``` -From within DataStore you should be able to extract all the information from the metadata file to populate the relevant DataStore fields. In the upper right, select "Edit" from the drop down menu. Then click on the "Files and Links" tab. On the left side of the files list, select the radio button corresponding to your metadata. Then click the "Extract Metadata" button from the top right of box with the files listed in it. +\pagebreak + +# Appendix B. Session and Version Information -Please don't activate your reference just yet! Data package references need to be reviewed prior to activation. We are still working on what that review process will look like. +In most cases you do not need to report session info (leave the "session-info" code chunk parameters in their default state: eval=FALSE). Session and version information is only necessary if you have set the "Listing" code chunk to eval=TRUE in appendix A. In that case, change the "session-info" code chunk parameters to eval=TRUE. + +```{r session-info, eval=TRUE, echo=FALSE, cache=FALSE} +sessionInfo() +Sys.time() +``` From 1f86e7a9bbbb6c6b15e073d68eab06a46e110df6 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 14:52:45 -0700 Subject: [PATCH 04/33] add example data package --- .../Example_BICY_Veg_metadata.xml | 16888 ++++++++++++++++ .../BICY_Example/Mini_BICY_Veg_Geography.csv | 1001 + .../Mini_BICY_Veg_Intercept_Cleaned.csv | 501 + .../Mini_BICY_Veg_Transect_Cleaned.csv | 501 + 4 files changed, 18891 insertions(+) create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv create mode 100644 inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml new file mode 100644 index 0000000..10920ad --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml @@ -0,0 +1,16888 @@ + + + + doi: https://doi.org/10.57830/2295086 + EXAMPLE: A Quantitative Plant Inventory of Big Cypress National Preserve: Processed Data (Publicly Available) + + + Issac + A + Quevedo + + NPS + issac_quevedo@partner.nps.gov + https://orcid.org/0000-0003-0129-981X + + + SFCN + + + IMD + + + + Robert + L + Baker + + NPS + robert_baker@nps.gov + https://orcid.org/0000-0001-7591-5035 + Contributor + + 2022-11-11 + eng + + "A quantitative plant inventory was conducted between the years of 2002 and 2004 by the Institute for Regional Conservation (IRC) on the 295,100 ha Big Cypress National Preserve in southern Florida. The goal of the study was to document at least 90% of plant taxa in the preserve. Abundance was measured on three hundred, 1 km x 1 km, sample stations; two, 250 m, transects per station; intercept points spaced 2.5 m along transects; as well as sixty, 500 m, roadside belt transects. 1094 unique plant taxa, both previously known and unknown, were documented. The data has been processed for dissemination by the Inverntory and Monitoring Division (IMD), complying with Executive Order 13642, Making Open and Machine Readable the New Default for Government Information (GPO 2013). Four tabular datasets have been created using the raw data provided from the park, following Darwin Core naming standards and introducing data quality flagging where data was missing or unclear."&#13; + + + + vegetation + plant + taxonomy + species + inventory + transect + survey + LTER Controlled Vocabulary + + + npspecies + intercept + belt + + + This data package is released to the "public domain" under Creative Commons CC0 1.0 "No Rights Reserved" (see: https://creativecommons.org/publicdomain/zero/1.0/). It is considered professional etiquette to provide attribution of the original work if this data package is shared in whole or by individual components. A generic citation is provided for this data package on the website https://portal.edirepository.org (herein "website") in the summary metadata page. Communication (and collaboration) with the creators of this data package is recommended to prevent duplicate research or publication. This data package (and its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the website shall not be liable for any damages resulting from misinterpretation or misuse of the data package or its components. Periodic updates of this data package may be available from the website. Thank you. + + + + + NPS Unit Connections: BICY + + -80.8267 + -81.3835 + 26.2593 + 25.6152 + + + + BICY + + -80.9777691883015 + -80.9777691883015 + 25.7898999866714 + 25.7898999866714 + + + + + + 2002-04-08 + + + 2006-06-24 + + + + + + kingdom + Plantae + plants + 202422 + + subkingdom + Viridiplantae + green plants + 954898 + + infrakingdom + Streptophyta + land plants + 846494 + + superdivision + Embryophyta + 954900 + + division + Tracheophyta + vascular plants + tracheophytes + 846496 + + subdivision + Spermatophytina + spermatophytes + seed plants + 846504 + + class + Magnoliopsida + 18063 + + superorder + Lilianae + monocots + monocotyledons + 846542 + + order + Poales + 846620 + + family + Poaceae + 40351 + + genus + Paspalum + 40990 + + species + Paspalum monostachyum + 41030 + + + + + + + + + + + + + + kingdom + Plantae + plants + 202422 + + subkingdom + Viridiplantae + green plants + 954898 + + infrakingdom + Streptophyta + land plants + 846494 + + superdivision + 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family + Plantaginaceae + plantains + 32869 + + genus + Mecardonia + 33644 + + species + Mecardonia acuminata + axilflower + 33645 + + variety + Mecardonia acuminata var. peninsularis + axilflower + 529113 + + + + + + + + + + + + + + + kingdom + Plantae + plants + 202422 + + subkingdom + Viridiplantae + green plants + 954898 + + infrakingdom + Streptophyta + land plants + 846494 + + superdivision + Embryophyta + 954900 + + division + Tracheophyta + vascular plants + tracheophytes + 846496 + + subdivision + Spermatophytina + spermatophytes + seed plants + 846504 + + class + Magnoliopsida + 18063 + + superorder + Lilianae + monocots + monocotyledons + 846542 + + order + Poales + 846620 + + family + Cyperaceae + sedges + 39357 + + genus + Rhynchospora + beaksedge + 40144 + + species + Rhynchospora odorata + fragrant beaksedge + 40190 + + + + + + + + + + + + + + species + Harrisella porrecta + needleroot airplant orchid + 43602 + + + kingdom + Plantae + plants + 202422 + + subkingdom + 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plants + 846504 + + class + Magnoliopsida + 18063 + + superorder + Rosanae + 846548 + + order + Sapindales + 28643 + + family + Anacardiaceae + cashews + 28771 + + genus + Rhus + sumac + 28772 + + species + Rhus copallinum + flameleaf sumac + winged sumac + shining sumac + 504754 + + + + + + + + + + + + + + kingdom + Plantae + plants + 202422 + + subkingdom + Viridiplantae + green plants + 954898 + + infrakingdom + Streptophyta + land plants + 846494 + + superdivision + Embryophyta + 954900 + + division + Tracheophyta + vascular plants + tracheophytes + 846496 + + subdivision + Spermatophytina + spermatophytes + seed plants + 846504 + + class + Magnoliopsida + 18063 + + superorder + Asteranae + 846535 + + order + Asterales + 35419 + + family + Asteraceae + sunflowers + 35420 + + genus + Vernonia + ironweed + 38615 + + species + Vernonia blodgettii + Florida ironweed + 38625 + + + + + + + + + + + + + + + + complete + + + + Judd + Patterson + + NPS + judd_patterson@nps.gov + https://orcid.org/0000-0002-0951-7917 + + + National Park Service +
+ 1201 Oakridge Drive, Suite 150 + Fort Collins + CO + 80525 + USA +
+ irma@nps.gov + http://www.nps.gov + https://ror.org/044zqqy65 + + + + + "Citation: Bradley KA, Woodmansee SW, Sadle JL, Gann GD. 2005. A quantitative plant inventory of the Big Cypress National Preserve. The Institute for Regional Conservation. Homestead, Florida. Available at: https://irma.nps.gov/DataStore/Reference/Profile/646691"&#13; + + + + + + Example Intercept Observations + Paired down, example species observation table from plants found on intercept points. + + Mini_BICY_Veg_Intercept_Cleaned.csv + 191995 + d2f8fe468e393c41c6dccf30bab1a91a + + + 1 + \n + column + + , + + + + + + https://irma.nps.gov/DataStore/Reference/Profile/2295086 + + + + + + scientificName + The full scientific name for the observed species according to the Guide to the Vascular Plants of Florida, Second Edition published by Richard P. Wunderlin and Bruce F. Hansen in 2003. University Press of Florida. + string + + + + + The full scientific name for the observed species according to the Guide to the Vascular Plants of Florida, Second Edition published by Richard P. Wunderlin and Bruce F. Hansen in 2003. University Press of Florida. + + + + + + + vernacularName + The common name in English. + string + + + + + The common name in English. + + + + + + + namePublishedIn + A reference for the publication in which the scientificName was originally established. + string + + + + + A reference for the publication in which the scientificName was originally established. + + + + + + + custom_TaxonAsRecorded + The species code used by the researchers who conducted the study. + string + + + + + The species code used by the researchers who conducted the study. + + + + + + + basisOfRecord + The specific nature of the data record. + string + + + + + The specific nature of the data record. + + + + + + + eventDate + The date during which the species occurrence was observed. + date + + + YYYY-MM-DD + + + + + locality + The specific description of the place where the study occurred. + string + + + + + The specific description of the place where the study occurred. + + + + + + + locationID + An identifier for the set of transects. + string + + + + + An identifier for the set of transects. + + + + + + + fieldNotes + Notes taken in the field about the study. + string + + + + + Notes taken in the field about the study. + + + + + + + custom_TransectStartLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + 25.6988 + 26.2539 + + + + + + + custom_TransectStartLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + -81.3738 + -80.8414 + + + + + + + custom_TransectEndLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the end of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + 25.6966 + 26.2547 + + + + + + + custom_TransectEndLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the end of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + -81.3763 + -80.8422 + + + + + + + geodeticDatum + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. + string + + + + + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. + + + + + + + coordinateUncertaintyInMeters + The horizontal distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. + float + + + + meter + + + natural + + 314 + 314 + + + + + + + locationRemarks + Comments or notes about the Location. + string + + + + + Comments or notes about the Location. + + + + + + + verbatimCoordinates + The verbatim original spatial coordinates of the transects in UTM's. + string + + + + + The verbatim original spatial coordinates of the transects in UTM's. + + + + + + + verbatimCoordinateSystem + The coordinate format for the verbatimCoordinates of the transects. + string + + + + + The coordinate format for the verbatimCoordinates of the transects. + + + + + + + verbatimSRS + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which coordinates given in verbatimCoordinates are based. + string + + + + + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which coordinates given in verbatimCoordinates are based. + + + + + + + individualCount + The number of individuals present at the time of the Occurrence. + float + + + + dimensionless + + + natural + + 1 + 1 + + + + + + + custom_CoordinateBearing + The coordinate bearing of the transects in degrees. + float + + + + degree + + + whole + + 0 + 355 + + + + + + + custom_Transect + An identifier for the set of transects. + float + + + + dimensionless + + + natural + + 129 + 613 + + + + + + + custom_InterceptPoint + An identifier for the intercept point lying on the transect where the species occurrence was observed. + float + + + + dimensionless + + + natural + + 1 + 100 + + + + + + + decimalLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the intercept point on which the species occurrence was observed. + float + + + + degree + + + real + + -81.3753211893717 + -80.841811227046 + + + + + + + decimalLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the intercept point on which the species occurrence was observed. + float + + + + degree + + + real + + 25.6982486534736 + 26.2548346243243 + + + + + + + taxonRank + The taxonomic rank of the most specific name in the scientificName. + string + + + + + The taxonomic rank of the most specific name in the scientificName. + + + + + + + coordinate_flag + A data quality flag indicating uncertainty regarding geographic coverage. + string + + + + + A data quality flag indicating uncertainty regarding geographic coverage. + + + + + + + taxonomic_flag + A data quality flag indicating uncertainty regarding taxonomic coverage. + string + + + + + A data quality flag indicating uncertainty regarding taxonomic coverage. + + + + + + + eventDate_flag + A data quality flag indicating uncertainty regarding temporal coverage. + string + + + + + A data quality flag indicating uncertainty regarding temporal coverage. + + + + + + + 500 + + + Example Transect Observations + Paired down, example species observation table from plants found on transects. + + Mini_BICY_Veg_Transect_Cleaned.csv + 172831 + 1121726158224578eb5a1125f5c35624 + + + 1 + \n + column + + , + + + + + + https://irma.nps.gov/DataStore/Reference/Profile/2295086 + + + + + + scientificName + The full scientific name for the observed species according to the Guide to the Vascular Plants of Florida, Second Edition published by Richard P. Wunderlin and Bruce F. Hansen in 2003. University Press of Florida. + string + + + + + The full scientific name for the observed species according to the Guide to the Vascular Plants of Florida, Second Edition published by Richard P. Wunderlin and Bruce F. Hansen in 2003. University Press of Florida. + + + + + + + vernacularName + The common name in English. + string + + + + + The common name in English. + + + + + + + namePublishedIn + A reference for the publication in which the scientificName was originally established. + string + + + + + A reference for the publication in which the scientificName was originally established. + + + + + + + custom_TaxonAsRecorded + The species code used by the researchers who conducted the study. + string + + + + + The species code used by the researchers who conducted the study. + + + + + + + basisOfRecord + The specific nature of the data record. + string + + + + + The specific nature of the data record. + + + + + + + eventDate + The date during which the species occurrence was observed. + date + + + YYYY-MM-DD + + + + + locality + The specific description of the place where the study occurred. + string + + + + + The specific description of the place where the study occurred. + + + + + + + locationID + An identifier for the set of transects. + float + + + + dimensionless + + + natural + + 128 + 746 + + + + + + + fieldNotes + Notes taken in the field about the study. + string + + + + + Notes taken in the field about the study. + + + + + + + decimalLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + 25.6363 + 26.2547 + + + + + + + decimalLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + -81.353 + -80.8441 + + + + + + + custom_TransectEndLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the end of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + 25.638 + 26.255 + + + + + + + custom_TransectEndLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the end of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + -81.3513 + -80.8422 + + + + + + + geodeticDatum + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. + string + + + + + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. + + + + + + + coordinateUncertaintyInMeters + The horizontal distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. + float + + + + meter + + + natural + + 314 + 314 + + + + + + + locationRemarks + Comments or notes about the Location. + string + + + + + Comments or notes about the Location. + + + + + + + verbatimCoordinates + The verbatim original spatial coordinates of the transects in UTM's. + string + + + + + The verbatim original spatial coordinates of the transects in UTM's. + + + + + + + verbatimCoordinateSystem + The coordinate format for the verbatimCoordinates of the transects. + string + + + + + The coordinate format for the verbatimCoordinates of the transects. + + + + + + + verbatimSRS + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which coordinates given in verbatimCoordinates are based. + string + + + + + The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which coordinates given in verbatimCoordinates are based. + + + + + + + individualCount + The number of individuals present at the time of the Occurrence. + float + + + + dimensionless + + + natural + + 1 + 1 + + + + + + + custom_CoordinateBearing + The coordinate bearing of the transects in degrees. + float + + + + degree + + + whole + + 0 + 355 + + + + + + + custom_Transect + An identifier for the set of transects. + float + + + + dimensionless + + + natural + + 128 + 746 + + + + + + + taxonRank + The taxonomic rank of the most specific name in the scientificName. + string + + + + + The taxonomic rank of the most specific name in the scientificName. + + + + + + + coordinate_flag + A data quality flag indicating uncertainty regarding geographic coverage. + string + + + + + A data quality flag indicating uncertainty regarding geographic coverage. + + + + + + + taxonomic_flag + A data quality flag indicating uncertainty regarding taxonomic coverage. + string + + + + + A data quality flag indicating uncertainty regarding taxonomic coverage. + + + + + + + eventDate_flag + A data quality flag indicating uncertainty regarding temporal coverage. + string + + + + + A data quality flag indicating uncertainty regarding temporal coverage. + + + + + + + 500 + + + Example Geographic Coverage + Aggregated coordinates from the observation tables. Used for metadata coverage, NOT intended for analysis or mapping. + + Mini_BICY_Veg_Geography.csv + 31549 + 9c3c24a106e50fca2231b63c4dba12cf + + + 1 + \n + column + + , + + + + + + https://irma.nps.gov/DataStore/Reference/Profile/2295086 + + + + + + decimalLongitude + The geographic longitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + -81.3757451273932 + -80.8414 + + + + + + + decimalLatitude + The geographic latitude (in decimal degrees, using the spatial reference system WGS84) of the beginning of the transect on which the species occurrence was observed. + float + + + + degree + + + real + + 25.6363 + 26.2547 + + + + + + + parkID + The specific description of the place where the study occurred. + string + + + + + The specific description of the place where the study occurred. + + + + + + + 1000 + + + DRR: https://doi.org/10.36967/2294558 + DRR: Quantitative Plant Inventory of Big Cypress National Preserve + + NPS + + + 2294558 + + + + + + + NPS + TRUE + + + + + + + EMLassemblyline + 3.5.4 + + + + + + + EMLeditor + 0.0.1.1 + + + + + + PUBVER + + + diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv new file mode 100644 index 0000000..4f2785c --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv @@ -0,0 +1,1001 @@ +decimalLongitude,decimalLatitude,parkID +-80.97776918830147,25.78989998667144,BICY +-81.02640878567064,25.869433786410116,BICY +-81.10148574559359,25.81876674132327,BICY +-81.15519939435676,26.01966196606359,BICY +-81.0341,26.24095795407766,BICY +-81.06637607888453,26.224199992422047,BICY +-81.34272778849552,26.0498725707323,BICY 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+-81.1964,26.1497,BICY +-80.9297,26.2511,BICY +-81.0673,26.1841,BICY +-81.0282,26.0416,BICY +-81.3129,25.9578,BICY +-81.2753,25.8978,BICY +-81.1145,26.0211,BICY +-81.0859,26.22,BICY +-81.22,25.9062,BICY +-81.0222,25.8254,BICY +-81.2265,26.2498,BICY +-81.257,25.8982,BICY +-81.0283,26.1624,BICY +-81.0642,25.6901,BICY +-81.1215,25.9827,BICY +-81.0295,26.2506,BICY +-81.1145,26.0211,BICY +-80.9758,25.7899,BICY +-81.0147,26.2374,BICY +-81.0295,26.2506,BICY +-81.0379,26.0432,BICY +-81.0507,26.2422,BICY +-81.2906,26.1134,BICY +-81.1145,26.0211,BICY +-81.1845,26.0927,BICY +-81.1769,25.8002,BICY +-81.2418,25.9154,BICY +-81.0341,26.2408,BICY +-81.1605,26.0691,BICY +-81.32,26.0974,BICY +-81.1883,25.96,BICY +-81.0845,26.2176,BICY diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv new file mode 100644 index 0000000..54c9029 --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv @@ -0,0 +1,501 @@ +scientificName,vernacularName,namePublishedIn,custom_TaxonAsRecorded,basisOfRecord,eventDate,locality,locationID,fieldNotes,custom_TransectStartLatitude,custom_TransectStartLongitude,custom_TransectEndLatitude,custom_TransectEndLongitude,geodeticDatum,coordinateUncertaintyInMeters,locationRemarks,verbatimCoordinates,verbatimCoordinateSystem,verbatimSRS,individualCount,custom_CoordinateBearing,custom_Transect,custom_InterceptPoint,decimalLongitude,decimalLatitude,taxonRank,coordinate_flag,taxonomic_flag,eventDate_flag +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2002-07-12,BICY,158-63,NA,25.7641,-80.8619,25.7619,-80.8615,WGS84,314,"Cell #BA56, Lysiloma Hammock","17N 2849565 E, 513849 N",UTM,WGS84,1,180,158,63,-80.8619,25.76267831942774,species,A,A,A +Panicum rigidulum,Redtop panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirigi,Human Observation,2002-08-28,BICY,226-53,NA,26.0181,-80.9222,26.0162,-80.9219,WGS84,314,Cell #AU28,"17N 2877690 E, 507785 N",UTM,WGS84,1,180,226,53,-80.9222,26.016904024911025,species,A,A,A +Fuirena scirpoidea,Southern umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirscir,Human Observation,2002-08-27,BICY,230-8,NA,26.043,-80.9091,26.0433,-80.9065,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,90,230,8,-80.9089001623441,26.042999999861784,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-08,BICY,348-52,NA,25.8547,-81.0005,25.8568,-81.0001,WGS84,314,Cell #AM46,"17N 2859588 E, 499945 N",UTM,WGS84,1,30,348,52,-80.99985155431462,25.855716223773204,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2002-08-07,BICY,258-21,NA,26.1609,-81.2653,26.1615,-81.263,WGS84,314,Cell #M12,"17N 2893533 E, 473488 N",UTM,WGS84,1,80,258,21,-81.26478287697877,26.160982285299287,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-04-15,BICY,338-71,NA,26.252,-81.045,26.2528,-81.0473,WGS84,314,Cell #AI02,"17N 2903598 E, 495510 N",UTM,WGS84,1,300,338,71,-81.04653869596935,26.25280104329691,species,A,A,A +Capparis flexuosa,"Limber caper, Bayleaf capertree",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cappflex,Human Observation,2004-03-25,BICY,375-38,NA,25.8429,-81.3738,25.8434,-81.3763,WGS84,314,"Cell #B47,endpoint estimated using arcmap","17N 2858345 E, 462537 N",UTM,WGS84,1,240,375,38,-81.37462066537475,25.842471241550214,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2002-07-10,BICY,151-82,NA,26.0769,-81.3107,26.0763,-81.3134,WGS84,314,Cell #H21,"17N 2884234 E, 468923 N",UTM,WGS84,1,265,151,82,-81.31274112594434,26.076738715948864,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-08-02,BICY,199-100,NA,25.8494,-80.995,25.8502,-80.9974,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,295,199,100,-80.99726024948605,25.850353666577362,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2002-11-15,BICY,286-13,NA,25.8652,-81.3462,25.8636,-81.3461,WGS84,314,Cell #E45,"17N 2860800 E, 465316 N",UTM,WGS84,1,180,286,13,-81.3462,25.864906641445376,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-02-13,BICY,478-15,NA,25.9287,-81.0161,25.9302,-81.0177,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,320,478,15,-81.01634061740384,25.92895929639368,species,A,A,A +Spiranthes odorata,"Fragrant lady's-tresses, Marsh lady's-tresses",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,spirodor,Human Observation,2003-02-20,BICY,496-85,NA,25.9524,-80.9397,25.9546,-80.9388,WGS84,314,Cell #AT35,"17N 2870419 E, 506034 N",UTM,WGS84,1,25,496,85,-80.93880333997689,25.95413837738667,species,A,A,A +Ficus aurea,"Strangler fig, Golden fig",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ficuaure,Human Observation,2004-04-29,BICY,418-38,NA,25.8155,-81.0426,25.8146,-81.0412,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,270,418,38,-81.04354740802444,25.815499996912624,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-18,BICY,365-61,NA,26.2236,-81.0959,26.2228,-81.0936,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,130,365,61,-81.09473094257677,26.22271522358408,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-03-03,BICY,381-88,NA,26.1969,-81.3017,26.1979,-81.3003,WGS84,314,Cell #I08,"17N 2897525 E, 469858 N",UTM,WGS84,1,80,381,88,-81.29953233759228,26.19724480041664,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-01-03,BICY,461-80,NA,26.1999,-80.9036,26.1995,-80.9062,WGS84,314,Cell #AW08,"17N 2897822 E, 509630 N",UTM,WGS84,1,260,461,80,-80.90557064160309,26.199586516848427,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-02-13,BICY,479-91,NA,25.9309,-81.0264,25.9302,-81.0289,WGS84,314,Cell #AK37,"17N 2868028 E, 497353 N",UTM,WGS84,1,250,479,91,-81.0285340275839,25.93019764888485,species,A,A,A +Eupatorium capillifolium,Dog-fennel,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupacapi,Human Observation,2004-05-06,BICY,340-22,NA,26.2422,-81.0507,26.2425,-81.0531,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,280,340,22,-81.0512421243163,26.242286202622427,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2002-07-17,BICY,163-16,NA,26.0432,-81.0379,26.0411,-81.0375,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,180,163,16,-81.0379,26.042838952191598,species,A,A,A +Rhizophora mangle,Red mangrove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhizmang,Human Observation,2004-03-25,BICY,375-32,NA,25.8429,-81.3738,25.8434,-81.3763,WGS84,314,"Cell #B47,endpoint estimated using arcmap","17N 2858345 E, 462537 N",UTM,WGS84,1,240,375,32,-81.37449108702471,25.842538940562743,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-02-11,BICY,492-89,NA,25.8735,-81.2566,25.8756,-81.2553,WGS84,314,Cell #N44,"17N 2861698 E, 474294 N",UTM,WGS84,1,50,492,89,-81.25489935389973,25.8747909487821,species,A,A,A +Ocotea coriacea,Lancewood,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ocotcori,Human Observation,2003-11-26,BICY,475-20,NA,25.8062,-80.8845,25.8065,-80.8823,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,250,475,20,-80.88496852719378,25.80604563716998,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-01,BICY,403-78,NA,26.1781,-81.0927,26.1803,-81.0924,WGS84,314,Cell #AD10,"17N 2895406 E, 490734 N",UTM,WGS84,1,10,403,78,-81.09236126678036,26.179833334986505,species,A,A,A +Aristida purpurascens,Arrowfeather threeawn,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,arispurp,Human Observation,2004-03-11,BICY,397-3,NA,25.7899,-80.9758,25.7898,-80.9782,WGS84,314,Cell #AP53,"17N 2852419 E, 502423 N",UTM,WGS84,1,270,397,3,-80.9758747793026,25.78989999998078,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-17,BICY,186-69,NA,26.0077,-81.2502,26.0099,-81.2509,WGS84,314,Cell #N29/185,"17N 2876558 E, 474962 N",UTM,WGS84,1,350,186,69,-81.25049921430934,26.0092333710836,NA,A,R,A +Coccoloba diversifolia,"Pigeonplum, Tietongue",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,coccdive,Human Observation,2003-11-26,BICY,476-69,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,69,-80.88536006986855,25.804851535538003,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2004-04-01,BICY,327-73,NA,26.179,-81.0835,26.1788,-81.0859,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,270,327,73,-81.08532562985383,26.178999988422035,species,A,A,A +Quercus virginiana,Virginia live oak,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,quervirg,Human Observation,2004-05-05,BICY,328-87,NA,26.2408,-81.0341,26.243,-81.0343,WGS84,314,Cell #AJ03,"17N 2902357 E, 496596 N",UTM,WGS84,1,0,328,87,-81.0341,26.24276314328995,species,A,A,A +Hymenocallis palmeri,Alligatorlily,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hymepalm,Human Observation,2002-05-28,BICY,208-13,NA,26.2207,-81.1821,26.2226,-81.1838,WGS84,314,Cell #U05,"17N 2900139 E, 481814 N",UTM,WGS84,1,325,208,13,-81.18228654349332,26.220940293302988,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2002-11-05,BICY,272-72,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,72,-81.22103041832507,25.907530910106082,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2002-05-22,BICY,213-2,NA,25.7595,-81.0428,25.7604,-81.0449,WGS84,314,Cell #AI56,"17N 2849056 E, 495705 N",UTM,WGS84,1,280,213,2,-81.04284908298605,25.7595078372099,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-06-05,BICY,265-16,NA,26.0206,-81.1546,26.0204,-81.1545,WGS84,314,Cell #X28,"17N 2877975 E, 484532 N",UTM,WGS84,1,210,265,16,-81.15479979917771,26.02028732231089,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-03-17,BICY,379-12,NA,26.186,-81.343,26.1838,-81.3428,WGS84,314,Cell #E09,"17N 2896326 E, 465728 N",UTM,WGS84,1,180,379,12,-81.343,26.18572921950922,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-02,BICY,356-85,NA,25.9555,-81.0064,25.9541,-81.0043,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,135,356,85,-81.00489974677217,25.95414369787102,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2002-08-01,BICY,254-62,NA,26.1693,-81.2554,26.1694,-81.2578,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,280,254,62,-81.25692685563064,26.16954293190904,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2002-07-31,BICY,253-67,NA,26.0454,-81.3423,26.0451,-81.3397,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,110,253,67,-81.34072726737581,26.044882895543335,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-26,BICY,415-52,NA,26.2242,-81.0649,26.2219,-81.0648,WGS84,314,Cell #AG05,"17N 2900516 E, 493515 N",UTM,WGS84,1,175,415,52,-81.06478661579294,26.223031089037942,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2003-02-06,BICY,456-34,NA,25.9529,-81.3444,25.9545,-81.3457,WGS84,314,Cell #E35,"17N 2870515 E, 465524 N",UTM,WGS84,1,325,456,34,-81.34488677537823,25.953528482218267,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2002-08-07,BICY,258-3,NA,26.1609,-81.2653,26.1615,-81.263,WGS84,314,Cell #M12,"17N 2893533 E, 473488 N",UTM,WGS84,1,80,258,3,-81.2652261253271,26.16091175515651,species,A,A,A +Laguncularia racemosa,White mangrove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lagurace,Human Observation,2004-03-25,BICY,374-47,NA,25.8429,-81.3738,25.8427,-81.3759,WGS84,314,Cell #B47,"17N 2858345 E, 462537 N",UTM,WGS84,1,270,374,47,-81.37497206394212,25.84289999527126,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-06-05,BICY,264-19,NA,26.0206,-81.1546,26.0206,-81.1546,WGS84,314,Cell #X28,"17N 2877975 E, 484532 N",UTM,WGS84,1,160,264,19,-81.15443770368351,26.02019711081848,species,A,A,A +Panicum tenerum,Bluejoint panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panitene,Human Observation,2002-09-17,BICY,197-39,NA,25.7085,-80.9687,25.7065,-80.9691,WGS84,314,Cell #AQ62,"17N 2843408 E, 503144 N",UTM,WGS84,1,190,197,39,-80.96886869253706,25.707633275860616,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-06,BICY,435-47,NA,25.8173,-81.1012,25.8194,-81.102,WGS84,314,"Cell #AC50, endpoint corrected using arcmap","17N 2855456 E, 489854 N",UTM,WGS84,1,350,435,47,-81.10140348477688,25.81834449769692,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-02-20,BICY,496-51,NA,25.9524,-80.9397,25.9546,-80.9388,WGS84,314,Cell #AT35,"17N 2870419 E, 506034 N",UTM,WGS84,1,25,496,51,-80.93916200714683,25.953443027148317,NA,A,R,A +Nephrolepis exaltata,Wild Boston fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephexal,Human Observation,2004-04-09,BICY,442-84,NA,25.7911,-81.0952,25.7893,-81.0965,WGS84,314,Cell #AD53,"17N 2852556 E, 490453 N",UTM,WGS84,1,215,442,84,-81.09640096253148,25.789547237394085,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2004-06-08,BICY,348-68,NA,25.8547,-81.0005,25.8568,-81.0001,WGS84,314,Cell #AM46,"17N 2859588 E, 499945 N",UTM,WGS84,1,30,348,68,-80.99965203033479,25.8560289073999,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-07-31,BICY,195-97,NA,26.0499,-81.3429,26.0497,-81.3404,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,100,195,97,-81.34051364772196,26.049519890418832,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-06-01,BICY,317-54,NA,25.9346,-81.0368,25.9348,-81.0343,WGS84,314,Cell #AJ37,"17N 2868446 E, 496319 N",UTM,WGS84,1,85,317,54,-81.03545745969187,25.934706197811966,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-04-09,BICY,180-93,NA,26.1888,-81.2352,26.1866,-81.2357,WGS84,314,Cell #3893; P09,"17N 2896616 E, 476496 N",UTM,WGS84,1,150,180,93,-81.23403701955594,26.18698259923732,species,A,A,A +Sagittaria graminea var. chapmanii,Chapman's arrowhead,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sagigramchap,Human Observation,2004-04-29,BICY,404-34,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,34,-81.03084490169276,25.820512251283947,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-02-07,BICY,493-73,NA,25.8691,-81.0272,25.8679,-81.0294,WGS84,314,Cell #AK44,"17N 2861184 E, 497273 N",UTM,WGS84,1,250,493,73,-81.02891102275343,25.86853657320384,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-31,BICY,320-11,NA,26.1331,-81.0631,26.1321,-81.0609,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,120,320,11,-81.06286185427768,26.13297589116773,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-13,BICY,477-12,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,12,-81.01604799826556,25.928433323760995,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-05-12,BICY,360-79,NA,25.9514,-80.9266,25.9531,-80.928,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,330,360,79,-80.92758594646658,25.9529438566219,species,A,A,A +Hydrilla verticillata,Water-thyme,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrvert1,Human Observation,2004-05-07,BICY,297-17,NA,25.7238,-80.9174,25.7236,-80.9199,WGS84,314,"Cell #AV60, Hess Hammock","17N 2845103 E, 508290 N",UTM,WGS84,1,270,297,17,-80.91782351485675,25.7237999993846,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-11,BICY,159-96,NA,26.0975,-81.2848,26.0982,-81.2872,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,295,159,96,-81.28697439621374,26.098415489026312,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-31,BICY,321-83,NA,26.1331,-81.0631,26.1352,-81.0633,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,0,321,83,-81.0631,26.1349729118762,species,A,A,A +Agalinis fasciculata,Beach false foxglove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,agalfasc,Human Observation,2002-08-23,BICY,246-86,NA,25.8536,-81.2248,25.8555,-81.2262,WGS84,314,Cell #Q46,"17N 2859495 E, 477474 N",UTM,WGS84,1,330,246,86,-81.2258724254734,25.855280676390954,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-08-22,BICY,244-28,NA,25.9154,-81.2418,25.9144,-81.2439,WGS84,314,"Cell #O39, endpoint corrected using arcmap","17N 2866336 E, 475780 N",UTM,WGS84,1,245,244,28,-81.24243321524328,25.91513296945733,species,A,A,A +Taxodium distichum,Bald cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxodist,Human Observation,2002-08-01,BICY,255-91,NA,26.1693,-81.2554,26.1675,-81.2543,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,170,255,91,-81.25500485357458,26.16727777184175,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-15,BICY,339-68,NA,26.252,-81.045,26.2518,-81.0431,WGS84,314,Cell #AI02,"17N 2903598 E, 495510 N",UTM,WGS84,1,100,339,68,-81.04332420751605,26.25173354295214,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-05-20,BICY,400-47,NA,26.2504,-80.8822,26.2525,-80.8815,WGS84,314,Cell #AY02,"17N 2903418 E, 511768 N",UTM,WGS84,1,20,400,47,-80.88179773878937,26.251396587934817,NA,A,R,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-04-29,BICY,404-97,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,97,-81.03185455825667,25.819423181961362,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-05-07,BICY,368-56,NA,25.7236,-80.9208,25.7257,-80.9206,WGS84,314,Cell #AU60,"17N 2845078 E, 507948 N",UTM,WGS84,1,0,368,56,-80.9208,25.724863722858792,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2002-08-22,BICY,244-86,NA,25.9154,-81.2418,25.9144,-81.2439,WGS84,314,"Cell #O39, endpoint corrected using arcmap","17N 2866336 E, 475780 N",UTM,WGS84,1,245,244,86,-81.24374486631633,25.91457982593195,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-08,BICY,256-90,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,90,-80.8868,26.180569145111114,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-02-13,BICY,478-91,NA,25.9287,-81.0161,25.9302,-81.0177,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,320,478,91,-81.01755976176914,25.93027305850519,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-05-12,BICY,362-50,NA,25.9823,-80.9107,25.98,-80.9103,WGS84,314,Cell #AV32,"17N 2873723 E, 508938 N",UTM,WGS84,1,180,362,50,-80.9107,25.981171716033902,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-03-31,BICY,318-48,NA,26.1349,-81.057,26.1348,-81.0596,WGS84,314,Cell #AH15,"17N 2890624 E, 494305 N",UTM,WGS84,1,270,318,48,-81.05819996290961,26.134899995003934,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-07-18,BICY,166-34,NA,25.9962,-81.081,25.9979,-81.0825,WGS84,314,Cell #AE30,"17N 2875262 E, 491889 N",UTM,WGS84,1,330,166,34,-81.08142448903241,25.9968644413706,NA,A,R,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-06-18,BICY,146-78,NA,26.1543,-81.3354,26.1543,-81.3329,WGS84,314,"Cell #F13, SE of Miles City","17N 2892813 E, 466479 N",UTM,WGS84,1,90,146,78,-81.3334497379113,26.154299986796023,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2002-08-08,BICY,256-97,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,97,-80.8868,26.180411189706845,species,A,A,A +Amphicarpum muhlenbergianum,Blue-maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,amphmuhl,Human Observation,2004-04-08,BICY,441-52,NA,26.2229,-81.2349,26.2209,-81.236,WGS84,314,Cell #P05,"17N 2900391 E, 476537 N",UTM,WGS84,1,210,441,52,-81.23555046255855,26.22188382495977,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2002-11-15,BICY,286-42,"""?"" was Spartina sp.",25.8652,-81.3462,25.8636,-81.3461,WGS84,314,Cell #E45,"17N 2860800 E, 465316 N",UTM,WGS84,1,180,286,42,-81.3462,25.86425222616542,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-12,BICY,138-85,NA,26.0416,-81.0282,26.0417,-81.0256,WGS84,314,"Cell #AK25, Middle Pines, east of Cal Stone","17N 2880288 E, 497181 N",UTM,WGS84,1,90,138,85,-81.02607675012057,26.041599984397287,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2004-05-06,BICY,341-55,NA,26.2422,-81.0507,26.24,-81.0504,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,175,341,55,-81.05058005599938,26.24096365495537,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2002-07-31,BICY,252-61,NA,26.0454,-81.3423,26.045,-81.3444,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,250,252,61,-81.34373189145916,26.044929204104672,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-07-12,BICY,161-3,NA,25.8383,-80.8533,25.8383,-80.8557,WGS84,314,"Cell #BB48, SE of Dade-Collier Airport","17N 2857785 E, 514705 N",UTM,WGS84,1,270,161,3,-80.85337480969908,25.838299999980737,species,A,A,A +Tillandsia setacea,"Thin-leaved wild-pine, Southern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillseta,Human Observation,2002-08-09,BICY,260-6,NA,26.1786,-81.0048,26.18,-81.0071,WGS84,314,Cell #AM10,"17N 2895459 E, 499518 N",UTM,WGS84,1,285,260,6,-81.00494493842739,26.178635041536346,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-02-11,BICY,489-93,NA,26.0752,-81.293,26.0762,-81.2954,WGS84,314,Cell #J21,"17N 2884040 E, 470692 N",UTM,WGS84,1,300,489,93,-81.2950124425862,26.076249276410472,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2002-07-11,BICY,160-65,NA,26.0975,-81.2848,26.0998,-81.2851,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,0,160,65,-81.2848,26.09896674550112,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2002-08-21,BICY,238-82,NA,25.9782,-80.899,25.9776,-80.8962,WGS84,314,Cell #AX32,"17N 2873270 E, 510111 N",UTM,WGS84,1,100,238,82,-80.89698389524663,25.977878669686778,species,A,A,A +Physostegia purpurea,"False dragonhead, Eastern false dragonhead",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,physpurp,Human Observation,2003-04-24,BICY,612-53,NA,25.7194,-81.0846,25.7177,-81.0832,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,150,612,53,-81.08393984508324,25.718364211079404,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2004-03-26,BICY,412-17,NA,26.1626,-81.0719,26.1649,-81.0717,WGS84,314,Cell #AF12,"17N 2893694 E, 492816 N",UTM,WGS84,1,5,412,17,-81.07186295108838,26.162982147180138,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-20,BICY,190-19,NA,25.7828,-80.8764,25.7807,-80.8773,WGS84,314,"Cell #AZ54, inside Loop Rd.","17N 2851635 E, 512389 N",UTM,WGS84,1,205,190,19,-80.87660014039014,25.78241141162989,NA,A,R,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-09,BICY,185-75,NA,25.7734,-80.8414,25.7713,-80.8427,WGS84,314,"Cell #BC55, Point B29S","17N 2850603 E, 515906 N",UTM,WGS84,1,210,185,75,-80.84233460049337,25.771934270901305,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-08-27,BICY,230-67,NA,26.043,-80.9091,26.0433,-80.9065,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,90,230,67,-80.9074263596319,26.042999990305205,species,A,A,A +Pteridium aquilinum var. pseudocaudatum,Tailed braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquipseu,Human Observation,2002-10-29,BICY,279-58,NA,26.1134,-81.2906,26.1113,-81.2902,WGS84,314,Cell #J17,"17N 2888274 E, 470944 N",UTM,WGS84,1,175,279,58,-81.29047365260891,26.112096194610395,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-12,BICY,139-94,NA,26.0416,-81.0282,26.0437,-81.0284,WGS84,314,"Cell #AK25, Middle Pines, east of Cal Stone","17N 2880288 E, 497181 N",UTM,WGS84,1,355,139,94,-81.02840465097998,26.043713084197073,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-08,BICY,351-8,NA,25.8614,-80.9935,25.8595,-80.9926,WGS84,314,Cell #AN45,"17N 2860338 E, 500653 N",UTM,WGS84,1,160,351,8,-80.99343175637678,25.861230358746425,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-10-31,BICY,276-83,NA,25.8982,-81.257,25.8975,-81.255,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,110,276,83,-81.25505411496277,25.89755939242957,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-08,BICY,175-87,NA,25.9,-81.0625,25.9007,-81.0648,WGS84,314,Cell #AG41,"17N 2864610 E, 493737 N",UTM,WGS84,1,290,175,87,-81.06453971613082,25.900671451970386,species,A,A,A +Mitreola petiolata,"Miterwort, Lax hornpod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mitrpeti,Human Observation,2003-05-13,BICY,611-69,NA,26.1457,-81.2422,26.1447,-81.2445,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,265,611,69,-81.24391853886421,26.145564288561236,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-28,BICY,229-93,NA,26.0141,-80.8956,26.0125,-80.894,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,140,229,93,-80.89410711803183,26.012492372175736,species,A,A,A +Helenium pinnatifidum,Southeastern sneezeweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,helepinn,Human Observation,2002-08-29,BICY,250-36,NA,25.784300000000002,-81.0757,25.7839,-81.0732,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,100,250,36,-81.07481632370458,25.784158927868585,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2004-06-16,BICY,335-81,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,81,-81.09657336802998,26.232899985711605,species,A,A,A +Psidium guajava,Guava,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psidguaj,Human Observation,2002-07-31,BICY,195-81,NA,26.0499,-81.3429,26.0497,-81.3404,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,100,195,81,-81.34090727177983,26.04958259162316,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2004-06-16,BICY,335-90,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,90,-81.09634818670001,26.232899982360006,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-08,BICY,174-4,NA,25.9,-81.0625,25.8982,-81.0612,WGS84,314,Cell #AG41,"17N 2864610 E, 493737 N",UTM,WGS84,1,150,174,4,-81.06245010099188,25.899921829302702,NA,A,R,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2002-08-08,BICY,256-86,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,86,-80.8868,26.18065940534057,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-09-18,BICY,225-2,NA,25.7079,-81.0433,25.7099,-81.0433,WGS84,314,Cell #AI62,"17N 2843334 E, 495652 N",UTM,WGS84,1,5,225,2,-81.0432956580165,25.707944961315253,species,A,A,A +Rhynchospora odorata,Fragrant beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynodor,Human Observation,2004-05-04,BICY,343-17,NA,25.863,-81.1021,25.8608,-81.1019,WGS84,314,Cell #AC45,"17N 2860512 E, 489770 N",UTM,WGS84,1,100,343,17,-81.10168243219292,25.862933383993163,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-11-08,BICY,271-95,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,95,-81.00773138256133,25.756472249362513,species,A,A,A +Rhynchospora tracyi,Tracy's beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyntrac,Human Observation,2002-08-28,BICY,227-89,NA,26.0181,-80.9222,26.0166,-80.9231,WGS84,314,Cell #AU28,"17N 2877690 E, 507785 N",UTM,WGS84,1,235,227,89,-80.92402073167305,26.016948054603084,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-04-06,BICY,423-97,NA,25.7633,-80.9177,25.765,-80.9164,WGS84,314,Cell #AV56,"17N 2849471 E, 508257 N",UTM,WGS84,1,50,423,97,-80.91584819975306,25.764707009526962,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-20,BICY,191-3,NA,25.7828,-80.8764,25.7848,-80.8776,WGS84,314,"Cell #AZ54, inside Loop Rd.","17N 2851635 E, 512389 N",UTM,WGS84,1,335,191,3,-80.87643160123346,25.78286135603138,species,A,A,A +Acrostichum danaeifolium,Giant leather fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acrodana,Human Observation,2002-11-15,BICY,287-58,NA,25.8652,-81.3462,25.8656,-81.3485,WGS84,314,Cell #E45,"17N 2860800 E, 465316 N",UTM,WGS84,1,290,287,58,-81.34755940968135,25.86564763999845,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-21,BICY,238-79,NA,25.9782,-80.899,25.9776,-80.8962,WGS84,314,Cell #AX32,"17N 2873270 E, 510111 N",UTM,WGS84,1,100,238,79,-80.8970576549835,25.97789042616909,species,A,A,A +Coccoloba diversifolia,"Pigeonplum, Tietongue",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,coccdive,Human Observation,2004-05-07,BICY,297-35,NA,25.7238,-80.9174,25.7236,-80.9199,WGS84,314,"Cell #AV60, Hess Hammock","17N 2845103 E, 508290 N",UTM,WGS84,1,270,297,35,-80.9182719423521,25.723799997391502,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2004-06-02,BICY,357-19,NA,25.9555,-81.0064,25.9541,-81.0084,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,240,357,19,-81.00681072303922,25.955285624683707,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-04-01,BICY,326-22,NA,26.179,-81.0835,26.1777,-81.0817,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,140,326,22,-81.08314634594909,26.178619711060527,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2004-03-25,BICY,372-36,NA,25.8451,-81.3595,25.8456,-81.362,WGS84,314,Cell #C47,"17N 2858583 E, 463972 N",UTM,WGS84,1,290,372,36,-81.36034362766395,25.845377847789507,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-05-21,BICY,215-83,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,83,-80.9045233739181,26.230299984999007,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-09,BICY,263-46,NA,26.1792,-80.9943,26.1805,-80.9961,WGS84,314,Cell #AN10,"17N 2895533 E, 500573 N",UTM,WGS84,1,310,263,46,-80.99518126167017,26.17986720620945,species,A,A,A +Quercus virginiana,Virginia live oak,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,quervirg,Human Observation,2002-06-17,BICY,145-37,NA,25.8329,-81.1112,25.8339,-81.1134,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,305,145,37,-81.1119557617947,25.833378904101462,species,A,A,A +Thelypteris interrupta,"Interrupted maiden fern, Hottentot fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelinte,Human Observation,2002-08-01,BICY,255-89,NA,26.1693,-81.2554,26.1675,-81.2543,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,170,255,89,-81.2550135379649,26.167322216434414,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-01-03,BICY,461-83,NA,26.1999,-80.9036,26.1995,-80.9062,WGS84,314,Cell #AW08,"17N 2897822 E, 509630 N",UTM,WGS84,1,260,461,83,-80.90564454045791,26.199574760704827,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-29,BICY,419-9,NA,25.8155,-81.0426,25.8165,-81.0447,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,300,419,9,-81.04279432423813,25.81560154775418,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-01-03,BICY,461-68,NA,26.1999,-80.9036,26.1995,-80.9062,WGS84,314,Cell #AW08,"17N 2897822 E, 509630 N",UTM,WGS84,1,260,461,68,-80.90527504603541,26.199633541043,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-20,BICY,188-1,NA,25.7909,-80.8837,25.7887,-80.8841,WGS84,314,Cell #AY53,"17N 2852536 E, 511658 N",UTM,WGS84,1,195,188,1,-80.88370645148883,25.79087820265396,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-07-10,BICY,151-16,NA,26.0769,-81.3107,26.0763,-81.3134,WGS84,314,Cell #H21,"17N 2884234 E, 468923 N",UTM,WGS84,1,265,151,16,-81.31109826891615,26.076868532208188,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2004-03-25,BICY,373-86,NA,25.8451,-81.3595,25.8474,-81.3595,WGS84,314,Cell #C47,"17N 2858583 E, 463972 N",UTM,WGS84,1,180,373,86,-81.3595,25.843159314738212,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-31,BICY,129-18,NA,26.2159,-81.0498,26.2163,-81.0475,WGS84,314,"Cell #AIO6, Kissimmee Billy Area","17N 2899596 E, 495029 N",UTM,WGS84,1,80,129,18,-81.04935654356153,26.215970529829455,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2002-10-31,BICY,277-57,NA,25.8982,-81.257,25.8971,-81.2595,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,240,277,57,-81.25823156899776,25.897556865464892,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-06-22,BICY,313-9,NA,26.1627,-81.2799,26.1606,-81.2794,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,180,313,9,-81.2799,26.162496913975417,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2002-05-21,BICY,215-71,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,71,-80.90482360901423,26.230299989023074,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-04-07,BICY,436-13,NA,26.2515,-81.2499,26.2493,-81.2496,WGS84,314,Cell #O02,"17N 2903558 E, 475040 N",UTM,WGS84,1,180,436,13,-81.2499,26.25120665714066,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-08-29,BICY,251-34,NA,25.784300000000002,-81.0757,25.7827,-81.0774,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,230,251,34,-81.07634918854308,25.783806817184978,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-05-18,BICY,364-89,NA,26.2236,-81.0959,26.222,-81.0973,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,220,364,89,-81.09733122237934,26.222061562430884,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2003-04-24,BICY,613-87,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,87,-81.08516095254025,25.721296386387458,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-05-07,BICY,368-63,NA,25.7236,-80.9208,25.7257,-80.9206,WGS84,314,Cell #AU60,"17N 2845078 E, 507948 N",UTM,WGS84,1,0,368,63,-80.9208,25.72502168820073,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2003-02-05,BICY,467-58,NA,26.1795,-80.9405,26.1786,-80.9427,WGS84,314,Cell #AS10,"17N 2895569 E, 505946 N",UTM,WGS84,1,250,467,58,-80.94186302516144,26.17905236662199,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-02-11,BICY,489-27,NA,26.0752,-81.293,26.0762,-81.2954,WGS84,314,Cell #J21,"17N 2884040 E, 470692 N",UTM,WGS84,1,300,489,27,-81.29358425382918,26.0755046315416,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2004-04-15,BICY,387-8,NA,26.2539,-81.0377,26.2532,-81.0356,WGS84,314,Cell #AJ02,"17N 2903800 E, 496238 N",UTM,WGS84,1,120,387,8,-81.03752662430894,26.25380974058547,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2002-10-29,BICY,291-7,NA,26.1255,-81.2857,26.1233,-81.2869,WGS84,314,Cell #K16,"17N 2889619 E, 471434 N",UTM,WGS84,1,210,291,7,-81.28578749019016,26.125363205534835,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-14,BICY,416-44,NA,26.2163,-81.0953,26.2174,-81.0932,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,70,416,44,-81.09426564890799,26.216639573569655,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2002-09-17,BICY,222-26,NA,25.6988,-80.9736,25.6966,-80.974,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,200,222,26,-80.97382148892368,25.69824865347358,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-05-12,BICY,361-64,NA,25.9514,-80.9266,25.9534,-80.9257,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,300,361,64,-80.92798345115361,25.95212209812084,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2002-07-17,BICY,163-92,NA,26.0432,-81.0379,26.0411,-81.0375,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,180,163,92,-81.0379,26.04112397485525,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2004-03-03,BICY,380-23,NA,26.1969,-81.3017,26.1947,-81.3022,WGS84,314,Cell #I08,"17N 2897525 E, 469858 N",UTM,WGS84,1,190,380,23,-81.30179989699081,26.19638888950503,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-08-27,BICY,231-9,NA,26.043,-80.9091,26.0448,-80.9074,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,45,231,9,-80.9089410299245,26.043143605797923,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-06-16,BICY,334-73,NA,26.2329,-81.0986,26.2346,-81.0971,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,40,334,73,-81.09742595453511,26.234161852005624,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-03-31,BICY,321-54,NA,26.1331,-81.0631,26.1352,-81.0633,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,0,321,54,-81.0631,26.134318521035034,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2003-04-29,BICY,606-81,NA,25.8642,-81.2501,25.8627,-81.2519,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,230,606,81,-81.25164762575665,25.86302507253479,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-07,BICY,493-17,NA,25.8691,-81.0272,25.8679,-81.0294,WGS84,314,Cell #AK44,"17N 2861184 E, 497273 N",UTM,WGS84,1,250,493,17,-81.02759845880314,25.868968792825573,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2004-03-25,BICY,373-11,NA,25.8451,-81.3595,25.8474,-81.3595,WGS84,314,Cell #C47,"17N 2858583 E, 463972 N",UTM,WGS84,1,180,373,11,-81.3595,25.844851772844272,species,A,A,A +Citrus sinensis,Sweet orange,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,citrsine,Human Observation,2002-08-01,BICY,193-29,NA,26.1696,-81.2652,26.1674,-81.2645,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,170,193,29,-81.26507407241391,26.168955553870116,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2004-04-29,BICY,419-60,NA,25.8155,-81.0426,25.8165,-81.0447,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,300,419,60,-81.04389550118088,25.81617698009412,species,A,A,A +Tillandsia paucifolia,"Twisted wild-pine, Potbelly airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillpauc,Human Observation,2002-05-09,BICY,183-96,NA,25.9254,-80.8441,25.9234,-80.8439,WGS84,314,Cell #BC38,"17N 2867427 E, 515616 N",UTM,WGS84,1,180,183,96,-80.8441,25.923233677606486,species,A,A,A +Spermacoce terminalis,Everglades Keys false buttonweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sperterm,Human Observation,2002-04-08,BICY,170-11,NA,25.9578,-81.3129,25.959,-81.315,WGS84,314,Cell #2460/H34,"17N 2871044 E, 468672 N",UTM,WGS84,1,310,170,11,-81.31311033972267,25.95795955470294,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2002-10-31,BICY,274-45,NA,25.9152,-81.2644,25.9163,-81.2664,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,305,274,45,-81.26531980767803,25.91578244379672,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-02-11,BICY,482-40,NA,25.963,-81.0302,25.9653,-81.0305,WGS84,314,Cell #AJ34,"17N 2871588 E, 496977 N",UTM,WGS84,1,0,482,40,-81.0302,25.963902629453415,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-05-18,BICY,366-72,NA,26.2061,-81.0978,26.2076,-81.0996,WGS84,314,Cell #AD07,"17N 2898512 E, 490230 N",UTM,WGS84,1,310,366,72,-81.09917968742167,26.207144316435482,species,A,A,A +Cornus foemina,"Stiff cornel, Swamp dogwood, Stiff dogwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cornfoem,Human Observation,2004-06-22,BICY,310-78,NA,26.1685,-81.2779,26.1671,-81.2762,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,170,310,78,-81.27756130454043,26.166766661487195,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2004-03-17,BICY,377-85,NA,26.1818,-81.343,26.1802,-81.3413,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,150,377,85,-81.34193712297355,26.180138933559565,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-06-18,BICY,147-38,NA,26.1543,-81.3354,26.1527,-81.334,WGS84,314,"Cell #F13, SE of Miles City","17N 2892813 E, 466479 N",UTM,WGS84,1,135,147,38,-81.3347281617439,26.15369367179814,species,A,A,A +Scleria baldwinii,Baldwin's nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclebald,Human Observation,2002-09-19,BICY,221-30,NA,26.1911,-80.8875,26.1901,-80.8896,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,250,221,30,-80.88820508412788,26.190868467481533,species,A,A,A +Taxodium distichum,Bald cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxodist,Human Observation,2002-08-07,BICY,259-40,NA,26.1609,-81.2653,26.163,-81.2655,WGS84,314,Cell #M12,"17N 2893533 E, 473488 N",UTM,WGS84,1,0,259,40,-81.2653,26.161802604710058,species,A,A,A +Quercus virginiana,Virginia live oak,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,quervirg,Human Observation,2002-11-08,BICY,288-42,NA,25.748,-80.9377,25.75,-80.9372,WGS84,314,Cell #AT58,"17N 2847783 E, 506247 N",UTM,WGS84,1,20,288,42,-80.93734205864097,25.748890629883487,species,A,A,A +Panicum repens,Torpedo grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirepe,Human Observation,2004-05-20,BICY,393-15,NA,26.2529,-80.8936,26.2541,-80.8915,WGS84,314,Cell #AX02,"17N 2903700 E, 510627 N",UTM,WGS84,1,60,393,15,-80.89327492264032,26.253069235858746,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2003-02-21,BICY,500-87,NA,26.0012,-80.9317,25.9991,-80.9313,WGS84,314,Cell #AT30,"17N 2875821 E, 506840 N",UTM,WGS84,1,180,500,87,-80.9317,25.99923679091539,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-26,BICY,414-62,NA,26.2242,-81.0649,26.2242,-81.0674,WGS84,314,Cell #AG05,"17N 2900516 E, 493515 N",UTM,WGS84,1,270,414,62,-81.06645113374306,26.224199991631814,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-05-05,BICY,331-59,NA,26.2506,-81.0295,26.2527,-81.0285,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,30,331,59,-81.02876178654817,26.25175295964892,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2002-06-18,BICY,148-100,NA,26.1363,-81.3348,26.137,-81.3325,WGS84,314,"Cell #F15, SE of Miles City","17N 2890819 E, 466533 N",UTM,WGS84,1,70,148,100,-81.33245079760394,26.137071755974638,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2004-03-30,BICY,389-76,NA,26.1428,-80.8861,26.142,-80.8883,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,250,389,76,-80.88788547202643,26.142213440316382,species,A,A,A +Piloblephis rigida,Wild pennyroyal,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pilorigi,Human Observation,2003-01-04,BICY,460-78,NA,26.2036,-80.9318,26.2058,-80.9315,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,10,460,78,-80.93146119301555,26.205333328842006,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-01-03,BICY,458-11,NA,26.2306,-80.9468,26.2319,-80.9444,WGS84,314,Cell #AS04,"17N 2901222 E, 505314 N",UTM,WGS84,1,60,458,11,-80.94656165551669,26.23072410675415,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-05-05,BICY,330-94,NA,26.2506,-81.0295,26.2484,-81.0298,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,185,330,94,-81.02970500840094,26.248486976204912,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-03-24,BICY,370-25,NA,25.9769,-81.3355,25.9789,-81.3346,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,30,370,25,-81.33518792714445,25.977388561262217,species,A,A,A +Ruellia succulenta,Thickleaf wild petunia,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ruelsucc,Human Observation,2004-04-07,BICY,432-28,NA,26.25,-81.2548,26.2478,-81.2547,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,180,432,28,-81.2548,26.249368184463812,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2003-04-29,BICY,607-90,NA,25.8642,-81.2501,25.8662,-81.252,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,320,607,90,-81.25154293560504,25.865755786087636,species,A,A,A +Tillandsia variabilis,"Soft-leaved wild-pine, Leatherleaf airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillvari,Human Observation,2004-04-29,BICY,405-91,NA,25.8211,-81.0303,25.8202,-81.0326,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,250,405,91,-81.03243205563874,25.820397638333425,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-08-09,BICY,263-58,NA,26.1792,-80.9943,26.1805,-80.9961,WGS84,314,Cell #AN10,"17N 2895533 E, 500573 N",UTM,WGS84,1,310,263,58,-80.99541115766941,26.180041259105646,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-09-17,BICY,197-38,NA,25.7085,-80.9687,25.7065,-80.9691,WGS84,314,Cell #AQ62,"17N 2843408 E, 503144 N",UTM,WGS84,1,190,197,38,-80.9688643671179,25.70765549956022,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-20,BICY,190-51,NA,25.7828,-80.8764,25.7807,-80.8773,WGS84,314,"Cell #AZ54, inside Loop Rd.","17N 2851635 E, 512389 N",UTM,WGS84,1,205,190,51,-80.87693721599395,25.781756946337328,NA,A,R,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-06-13,BICY,136-90,NA,26.0401,-81.0673,26.0421,-81.0672,WGS84,314,"Cell #AG25, Middle Pines, near Cal Stone","17N 2880124 E, 493267 N",UTM,WGS84,1,5,136,90,-81.06710406021493,26.04212316615924,NA,A,R,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,unknown,Human Observation,2002-11-08,BICY,271-15,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,15,-81.00576811206956,25.75615877869819,NA,A,R,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2002-11-08,BICY,270-17,NA,25.7556,-81.003,25.7566,-81.0018,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848614 E, 499702 N",UTM,WGS84,1,80,270,17,-81.00258280804076,25.75566661579219,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-09-17,BICY,222-23,NA,25.6988,-80.9736,25.6966,-80.974,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,200,222,23,-80.97379593261353,25.698312270399768,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-09,BICY,442-48,NA,25.7911,-81.0952,25.7893,-81.0965,WGS84,314,Cell #AD53,"17N 2852556 E, 490453 N",UTM,WGS84,1,215,442,48,-81.0958862681343,25.79021270833703,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2002-04-09,BICY,181-5,NA,26.1888,-81.2352,26.1889,-81.2377,WGS84,314,Cell #3893; P09,"17N 2896616 E, 476496 N",UTM,WGS84,1,280,181,5,-81.23532315377633,26.188819591830427,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-18,BICY,364-71,NA,26.2236,-81.0959,26.222,-81.0973,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,220,364,71,-81.09704176471091,26.222372708283775,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-22,BICY,219-5,NA,25.7737,-81.0393,25.7735,-81.0388,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,155,219,5,-81.03924733536763,25.773597739803417,species,A,A,A +Panicum repens,Torpedo grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirepe,Human Observation,2004-05-20,BICY,393-57,NA,26.2529,-80.8936,26.2541,-80.8915,WGS84,314,Cell #AX02,"17N 2903700 E, 510627 N",UTM,WGS84,1,60,393,57,-80.8923647010215,26.253543092328314,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2004-03-30,BICY,391-82,NA,26.1527,-80.8913,26.1549,-80.891,WGS84,314,Cell #AX13,"17N 2892602 E, 510865 N",UTM,WGS84,1,10,391,82,-80.89094397271622,26.154522230357323,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-03-17,BICY,376-99,NA,26.1818,-81.343,26.1797,-81.3438,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,220,376,99,-81.34459146317975,26.180088693436154,species,A,A,A +Ruellia succulenta,Thickleaf wild petunia,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ruelsucc,Human Observation,2004-04-07,BICY,436-74,NA,26.2515,-81.2499,26.2493,-81.2496,WGS84,314,Cell #O02,"17N 2903558 E, 475040 N",UTM,WGS84,1,180,436,74,-81.2499,26.24983020202528,species,A,A,A +Ardisia escallonioides,Marlberry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ardiesca,Human Observation,2002-07-31,BICY,194-51,NA,26.0499,-81.3429,26.0503,-81.3446,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,290,194,51,-81.34409720964224,26.050293605076394,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-11-05,BICY,293-97,NA,26.0816,-81.2488,26.0816,-81.2464,WGS84,314,Cell #O21,"17N 2884745 E, 475114 N",UTM,WGS84,1,90,293,97,-81.24637617424298,26.081599979645024,NA,A,R,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-02-05,BICY,466-10,NA,26.1795,-80.9152,26.1814,-80.9138,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,30,466,10,-80.91507495611722,26.179695419102433,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2002-07-31,BICY,252-8,NA,26.0454,-81.3423,26.045,-81.3444,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,250,252,8,-81.34248778969547,26.04533825708644,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-02-06,BICY,454-60,NA,25.953,-81.3496,25.9516,-81.3514,WGS84,314,Cell #D35,"17N 2870527 E, 464999 N",UTM,WGS84,1,240,454,60,-81.35089698765815,25.952323021093076,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-17,BICY,144-32,NA,25.8329,-81.1112,25.8352,-81.1114,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,5,144,32,-81.11113045505716,25.833619368638836,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2003-02-11,BICY,492-29,NA,25.8735,-81.2566,25.8756,-81.2553,WGS84,314,Cell #N44,"17N 2861698 E, 474294 N",UTM,WGS84,1,50,492,29,-81.25604586094902,25.873920648446415,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2004-04-29,BICY,404-14,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,14,-81.0305243719368,25.820857986075968,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-08-29,BICY,250-35,NA,25.784300000000002,-81.0757,25.7839,-81.0732,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,100,250,35,-81.07484087024012,25.784162846611416,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-29,BICY,404-49,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,49,-81.03108529778808,25.82025294971525,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-06-22,BICY,310-39,NA,26.1685,-81.2779,26.1671,-81.2762,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,170,310,39,-81.27773065101835,26.16763333089536,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2003-05-13,BICY,610-51,NA,26.1457,-81.2422,26.1436,-81.2431,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,210,610,51,-81.24283753353728,26.144703356128495,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-31,BICY,319-44,NA,26.1349,-81.057,26.1335,-81.055,WGS84,314,Cell #AH15,"17N 2890624 E, 494305 N",UTM,WGS84,1,130,319,44,-81.0561573817379,26.134261793727916,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-02-05,BICY,466-42,NA,26.1795,-80.9152,26.1814,-80.9138,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,30,466,42,-80.91467481288956,26.180320759464532,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-21,BICY,239-81,NA,25.9782,-80.899,25.9802,-80.8984,WGS84,314,Cell #AX32,"17N 2873270 E, 510111 N",UTM,WGS84,1,25,239,81,-80.8981453499425,25.979856565618284,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-05-13,BICY,430-59,NA,25.9072,-81.2737,25.9054,-81.2743,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,220,430,59,-81.27464624661282,25.906180093862798,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2002-08-22,BICY,244-98,NA,25.9154,-81.2418,25.9144,-81.2439,WGS84,314,"Cell #O39, endpoint corrected using arcmap","17N 2866336 E, 475780 N",UTM,WGS84,1,245,244,98,-81.24401624087237,25.91446538095698,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2004-05-26,BICY,359-98,NA,25.8254,-81.0222,25.8255,-81.0246,WGS84,314,Cell #AK49,"17N 2856346 E, 497776 N",UTM,WGS84,1,280,359,98,-81.02460640382857,25.825784000277075,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-27,BICY,235-66,NA,26.0528,-80.905,26.0506,-80.905,WGS84,314,"Cell #AW24, endpoint estimated using arcmap","17N 2881537 E, 509501 N",UTM,WGS84,1,180,235,66,-80.905,26.051310679653696,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-05-07,BICY,369-58,NA,25.7236,-80.9208,25.7235,-80.9229,WGS84,314,Cell #AU60,"17N 2845078 E, 507948 N",UTM,WGS84,1,270,369,58,-80.92224493062385,25.72359999283682,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2002-11-08,BICY,289-97,NA,25.748,-80.9377,25.748,-80.9352,WGS84,314,Cell #AT58,"17N 2847783 E, 506247 N",UTM,WGS84,1,95,289,97,-80.93529218599629,25.747809201281104,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-06-22,BICY,313-68,NA,26.1627,-81.2799,26.1606,-81.2794,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,180,313,68,-81.2799,26.161165572116825,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-29,BICY,250-17,NA,25.784300000000002,-81.0757,25.7839,-81.0732,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,100,250,17,-81.07528270815551,25.784233383273794,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-02-13,BICY,479-65,NA,25.9309,-81.0264,25.9302,-81.0289,WGS84,314,Cell #AK37,"17N 2868028 E, 497353 N",UTM,WGS84,1,250,479,65,-81.02792430799886,25.930398323845903,species,A,A,A +Centrosema virginianum,Spurred butterfly-pea,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centvirg,Human Observation,2004-06-03,BICY,352-95,NA,26.0243,-81.0653,26.0258,-81.067,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,335,352,95,-81.06630276113883,26.02624287265822,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-29,BICY,207-47,NA,26.1989,-81.2169,26.2003,-81.2148,WGS84,314,Cell #R08,"17N 2897730 E, 478329 N",UTM,WGS84,1,60,207,47,-81.21588189138772,26.199430273877997,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2004-06-10,BICY,315-100,NA,26.1551,-81.1871,26.1539,-81.1851,WGS84,314,Cell #U13,"17N 2892878 E, 481301 N",UTM,WGS84,1,125,315,100,-81.18505185327507,26.153805702214523,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2004-05-05,BICY,331-55,NA,26.2506,-81.0295,26.2527,-81.0285,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,30,331,55,-81.0288118353783,26.25167479301879,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-11-26,BICY,474-40,NA,25.8255,-80.9092,25.8276,-80.9083,WGS84,314,Cell #AW49,"17N 2856359 E, 509099 N",UTM,WGS84,1,15,474,40,-80.90894186354473,25.82637188940324,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-05-20,BICY,401-63,NA,26.2504,-80.8822,26.2511,-80.8799,WGS84,314,Cell #AY02,"17N 2903418 E, 511768 N",UTM,WGS84,1,80,401,63,-80.88064744199556,26.250646847218793,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-23,BICY,237-68,NA,25.8448,-81.2201,25.8466,-81.2215,WGS84,314,Cell #Q47,"17N 2858519 E, 477943 N",UTM,WGS84,1,330,237,68,-81.22094789906245,25.84612890921281,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-06-22,BICY,312-94,NA,26.1627,-81.2799,26.164,-81.278,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,50,312,94,-81.27809940371633,26.164063418699314,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-07,BICY,130-43,NA,25.8803,-81.2219,25.881,-81.2243,WGS84,314,"Cell #Q43, East of Burns Lake Rd. Q43","17N 2862448 E, 477773 N",UTM,WGS84,1,290,130,43,-81.2229079653584,25.880631871563516,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-07,BICY,169-47,NA,25.8341,-81.0889,25.836,-81.0888,WGS84,314,"Cell #AE48, W. of Loop Rd. S of Monroe","17N 2857310 E, 491088 N",UTM,WGS84,1,0,169,47,-81.0889,25.835160608448742,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2002-05-22,BICY,219-71,NA,25.7737,-81.0393,25.7735,-81.0388,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,155,219,71,-81.03855217068093,25.772247903287706,species,A,A,A +Smilax auriculata,Earleaf greenbrier,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smilauri,Human Observation,2003-02-13,BICY,480-65,NA,25.9309,-81.0264,25.9289,-81.0261,WGS84,314,Cell #AK37,"17N 2868028 E, 497353 N",UTM,WGS84,1,170,480,65,-81.02611832150852,25.929455503803325,species,A,A,A +Eleocharis cellulosa,Gulf Coast spikerush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eleocell,Human Observation,2002-05-20,BICY,191-8,NA,25.7828,-80.8764,25.7848,-80.8776,WGS84,314,"Cell #AZ54, inside Loop Rd.","17N 2851635 E, 512389 N",UTM,WGS84,1,335,191,8,-80.87648427002814,25.782963616067267,species,A,A,A +Acrostichum danaeifolium,Giant leather fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acrodana,Human Observation,2003-06-04,BICY,520-96,NA,25.8672,-81.353,25.8671,-81.3506,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,90,520,96,-81.3506055076404,25.867199980250348,species,A,A,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2004-06-16,BICY,335-9,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,9,-81.09837481866998,26.2328999998236,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-06-01,BICY,316-27,NA,25.9346,-81.0368,25.9352,-81.0391,WGS84,314,Cell #AJ37,"17N 2868446 E, 496319 N",UTM,WGS84,1,300,316,27,-81.03738355859672,25.934904637472652,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-03-26,BICY,414-53,NA,26.2242,-81.0649,26.2242,-81.0674,WGS84,314,Cell #AG05,"17N 2900516 E, 493515 N",UTM,WGS84,1,270,414,53,-81.06622596916748,26.22419999388495,species,A,A,A +Cephalanthus occidentalis,Common buttonbush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cephocci,Human Observation,2003-05-13,BICY,610-79,NA,26.1457,-81.2422,26.1436,-81.2431,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,210,610,79,-81.2431875473455,26.144156177842707,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2004-05-04,BICY,345-52,NA,25.8178,-80.8904,25.8179,-80.8928,WGS84,314,Cell #AX50,"17N 2855514 E, 510987 N",UTM,WGS84,1,270,345,52,-80.89169647812676,25.817799994218067,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2004-04-28,BICY,409-6,NA,25.8148,-81.0772,25.8145,-81.0796,WGS84,314,Cell #AF50,"17N 2855174 E, 492265 N",UTM,WGS84,1,220,409,6,-81.07729615442571,25.814696279700353,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2004-04-02,BICY,427-26,NA,26.2477,-80.9374,26.2497,-80.9363,WGS84,314,Cell #AT02,"17N 2903122 E, 506250 N",UTM,WGS84,1,30,427,26,-80.9370746954694,26.248208084608585,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2002-07-31,BICY,195-8,NA,26.0499,-81.3429,26.0497,-81.3404,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,100,195,8,-81.34270318685857,26.049868652248716,species,A,A,A +Eriocaulon compressum,Flattened pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriocomp,Human Observation,2004-03-30,BICY,388-78,NA,26.1428,-80.8861,26.1411,-80.8845,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,145,388,78,-80.8849814989884,26.1413582193379,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-27,BICY,235-97,NA,26.0528,-80.905,26.0506,-80.905,WGS84,314,"Cell #AW24, endpoint estimated using arcmap","17N 2881537 E, 509501 N",UTM,WGS84,1,180,235,97,-80.905,26.050611150294113,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-08-09,BICY,261-81,NA,26.1786,-81.0048,26.1769,-81.0032,WGS84,314,Cell #AM10,"17N 2895459 E, 499518 N",UTM,WGS84,1,145,261,81,-81.00363812566675,26.177102773493385,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-31,BICY,320-44,NA,26.1331,-81.0631,26.1321,-81.0609,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,120,320,44,-81.06214742013123,26.132603562296886,species,A,A,A +Eleocharis cellulosa,Gulf Coast spikerush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eleocell,Human Observation,2002-08-27,BICY,235-34,NA,26.0528,-80.905,26.0506,-80.905,WGS84,314,"Cell #AW24, endpoint estimated using arcmap","17N 2881537 E, 509501 N",UTM,WGS84,1,180,235,34,-80.905,26.052032774405415,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2004-03-24,BICY,370-70,NA,25.9769,-81.3355,25.9789,-81.3346,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,30,370,70,-81.33462618950502,25.97826796975523,species,A,A,A +Amphicarpum muhlenbergianum,Blue-maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,amphmuhl,Human Observation,2004-04-07,BICY,432-44,NA,26.25,-81.2548,26.2478,-81.2547,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,180,432,44,-81.2548,26.24900714698961,species,A,A,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2004-04-15,BICY,387-46,NA,26.2539,-81.0377,26.2532,-81.0356,WGS84,314,Cell #AJ02,"17N 2903800 E, 496238 N",UTM,WGS84,1,120,387,46,-81.03670309343592,26.253381005493313,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-29,BICY,405-41,NA,25.8211,-81.0303,25.8202,-81.0326,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,250,405,41,-81.0312605996102,25.820783555216646,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-08,BICY,256-87,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,87,-80.8868,26.180636840283313,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-04-24,BICY,613-35,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,35,-81.08482566842335,25.72016291438282,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-09-19,BICY,221-77,NA,26.1911,-80.8875,26.1901,-80.8896,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,250,221,77,-80.88930971032325,26.190505726241064,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-29,BICY,404-30,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,30,-81.0307807958905,25.82058139830022,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-14,BICY,416-93,NA,26.2163,-81.0953,26.2174,-81.0932,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,70,416,93,-81.09311375085214,26.21701772626903,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-04-14,BICY,416-87,NA,26.2163,-81.0953,26.2174,-81.0932,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,70,416,87,-81.09325479999379,26.216971422353733,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2003-06-04,BICY,521-88,NA,25.8672,-81.353,25.8687,-81.3513,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,60,521,88,-81.3510991005026,25.86819289306896,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-06-08,BICY,350-37,NA,25.8614,-80.9935,25.8614,-80.996,WGS84,314,Cell #AN45,"17N 2860338 E, 500653 N",UTM,WGS84,1,250,350,37,-80.9943671765429,25.861114429738386,NA,A,R,A +Fuirena scirpoidea,Southern umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirscir,Human Observation,2002-08-27,BICY,230-13,NA,26.043,-80.9091,26.0433,-80.9065,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,90,230,13,-80.90877526380915,26.042999999635015,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-18,BICY,364-59,NA,26.2236,-81.0959,26.222,-81.0973,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,220,364,59,-81.09684879207634,26.222580138521103,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-11,BICY,490-39,NA,26.0752,-81.293,26.0774,-81.2932,WGS84,314,Cell #J21,"17N 2884040 E, 470692 N",UTM,WGS84,1,5,490,39,-81.29291506828429,26.076076701175776,species,A,A,A +Panicum tenerum,Bluejoint panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panitene,Human Observation,2002-08-27,BICY,231-79,NA,26.043,-80.9091,26.0448,-80.9074,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,45,231,79,-80.90770458278303,26.044260533712613,species,A,A,A +Eriocaulon ravenelii,Ravenel's pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriorave,Human Observation,2002-11-08,BICY,271-37,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,37,-81.00630801042716,25.756244985771204,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-06-24,BICY,322-31,NA,26.2493,-81.0753,26.2472,-81.0743,WGS84,314,Cell #AF02,"17N 2903294 E, 492483 N",UTM,WGS84,1,20,322,31,-81.07503468204506,26.249957324199677,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-05-27,BICY,526-8,NA,25.7363,-80.8579,25.7376,-80.8559,WGS84,314,Cell #BB59,"17N 2846491 E, 514249 N",UTM,WGS84,1,60,526,8,-80.85772738199728,25.736390265666138,NA,A,R,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-17,BICY,186-64,NA,26.0077,-81.2502,26.0099,-81.2509,WGS84,314,Cell #N29/185,"17N 2876558 E, 474962 N",UTM,WGS84,1,350,186,64,-81.25047753185183,26.009122257268697,NA,A,R,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-07-10,BICY,153-96,NA,26.0821,-81.3342,26.0798,-81.3337,WGS84,314,"Cell #F21, W of Prairie Fire Trail","17N 2884819 E, 466581 N",UTM,WGS84,1,170,153,96,-81.33378345195776,26.079966634546782,species,A,A,A +Hymenocallis palmeri,Alligatorlily,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hymepalm,Human Observation,2002-07-10,BICY,151-99,NA,26.0769,-81.3107,26.0763,-81.3134,WGS84,314,Cell #H21,"17N 2884234 E, 468923 N",UTM,WGS84,1,265,151,99,-81.31316428550107,26.076705275398496,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-17,BICY,186-5,NA,26.0077,-81.2502,26.0099,-81.2509,WGS84,314,Cell #N29/185,"17N 2876558 E, 474962 N",UTM,WGS84,1,350,186,5,-81.25022168193516,26.007811113878372,NA,A,R,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-20,BICY,189-20,NA,25.7909,-80.8837,25.7895,-80.8818,WGS84,314,Cell #AY53,"17N 2852536 E, 511658 N",UTM,WGS84,1,130,189,20,-80.88331810259795,25.790609893079694,NA,A,R,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2002-05-22,BICY,218-59,NA,25.7737,-81.0393,25.7737,-81.0393,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,110,218,59,-81.03791822498403,25.773244623274426,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-11-26,BICY,474-60,NA,25.8255,-80.9092,25.8276,-80.9083,WGS84,314,Cell #AW49,"17N 2856359 E, 509099 N",UTM,WGS84,1,15,474,60,-80.90881279389896,25.82680783389367,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2002-09-17,BICY,222-15,NA,25.6988,-80.9736,25.6966,-80.974,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,200,222,15,-80.97372778232034,25.698481915511667,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2002-09-19,BICY,221-22,NA,26.1911,-80.8875,26.1901,-80.8896,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,250,221,22,-80.88801706196637,26.190930209825016,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-01-03,BICY,461-73,NA,26.1999,-80.9036,26.1995,-80.9062,WGS84,314,Cell #AW08,"17N 2897822 E, 509630 N",UTM,WGS84,1,260,461,73,-80.90539821088413,26.199613947702446,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-09,BICY,185-33,NA,25.7734,-80.8414,25.7713,-80.8427,WGS84,314,"Cell #BC55, Point B29S","17N 2850603 E, 515906 N",UTM,WGS84,1,210,185,33,-80.84181122704604,25.77275507997237,species,A,A,A +Rhynchospora odorata,Fragrant beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynodor,Human Observation,2003-01-04,BICY,460-17,NA,26.2036,-80.9318,26.2058,-80.9315,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,10,460,17,-80.93172615830727,26.203977776902523,species,A,A,A +Rhynchospora miliacea,Millet beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmili,Human Observation,2002-08-08,BICY,256-60,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,60,-80.8868,26.18124609680443,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2004-06-22,BICY,313-72,NA,26.1627,-81.2799,26.1606,-81.2794,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,180,313,72,-81.2799,26.161075311642925,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-02,BICY,198-35,NA,25.8494,-80.995,25.8499,-80.9928,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,80,198,35,-80.99414039845246,25.849537147076916,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-02-05,BICY,465-32,NA,26.1795,-80.9152,26.1798,-80.9177,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,280,465,32,-80.91598812231439,26.179625386055463,species,A,A,A +Ocotea coriacea,Lancewood,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ocotcori,Human Observation,2003-11-26,BICY,475-56,NA,25.8062,-80.8845,25.8065,-80.8823,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,250,475,56,-80.88581187308297,25.805767780263164,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-22,BICY,245-69,NA,25.9154,-81.2418,25.9176,-81.2417,WGS84,314,Cell #O39,"17N 2866336 E, 475780 N",UTM,WGS84,1,0,245,69,-81.2418,25.916957045968793,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-06-04,BICY,525-45,NA,25.98,-80.8747,25.981,-80.8767,WGS84,314,Cell #AZ32,"17N 2873479 E, 512543 N",UTM,WGS84,1,305,525,45,-80.87562031128574,25.980582438576665,species,A,A,A +Aristida beyrichiana,Southern wiregrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,arisbeyr,Human Observation,2004-04-07,BICY,436-97,NA,26.2515,-81.2499,26.2493,-81.2496,WGS84,314,Cell #O02,"17N 2903558 E, 475040 N",UTM,WGS84,1,180,436,97,-81.2499,26.24931121068379,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2003-02-13,BICY,477-55,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,55,-81.01586166063933,25.927477733670713,species,A,A,A +Scleria,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,scleria sp.,Human Observation,2004-05-12,BICY,360-47,Scleria species,25.9514,-80.9266,25.9531,-80.928,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,330,360,47,-80.92718657264685,25.952318497826056,genus,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-27,BICY,235-20,NA,26.0528,-80.905,26.0506,-80.905,WGS84,314,"Cell #AW24, endpoint estimated using arcmap","17N 2881537 E, 509501 N",UTM,WGS84,1,180,235,20,-80.905,26.05234869083658,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-08-29,BICY,248-9,NA,25.7858,-81.0958,25.7836,-81.0971,WGS84,314,Cell #AD54,"17N 2851968 E, 490392 N",UTM,WGS84,1,210,248,9,-81.09591216493145,25.78562411314039,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-21,BICY,239-100,NA,25.9782,-80.899,25.9802,-80.8984,WGS84,314,Cell #AX32,"17N 2873270 E, 510111 N",UTM,WGS84,1,25,239,100,-80.89794487300416,25.98024514195285,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-02-05,BICY,468-19,NA,26.1795,-80.9405,26.1775,-80.9416,WGS84,314,Cell #AS10,"17N 2895569 E, 505946 N",UTM,WGS84,1,210,468,19,-80.94073758222824,26.179128703391463,NA,A,R,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2003-04-29,BICY,607-95,NA,25.8642,-81.2501,25.8662,-81.252,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,320,607,95,-81.25162309980213,25.86584221821773,species,A,A,A +Rhynchospora tracyi,Tracy's beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyntrac,Human Observation,2002-08-27,BICY,234-17,NA,26.0528,-80.905,26.0519,-80.9029,WGS84,314,Cell #AW24,"17N 2881537 E, 509501 N",UTM,WGS84,1,120,234,17,-80.90463220798472,26.05260819314068,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-22,BICY,218-20,NA,25.7737,-81.0393,25.7737,-81.0393,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,110,218,20,-81.03883160050776,25.77354563648134,species,A,A,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2002-10-31,BICY,277-94,NA,25.8982,-81.257,25.8971,-81.2595,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,240,277,94,-81.25903100137657,25.897139386542218,species,A,A,A +Sesuvium portulacastrum,"Perennial sea-purslane, Shoreline seapurslane",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sesuport,Human Observation,2003-03-25,BICY,445-66,NA,25.8941,-81.3267,25.8932,-81.3289,WGS84,314,Cell #G42,"17N 2863995 E, 467279 N",UTM,WGS84,1,250,445,66,-81.32824727851953,25.893590603053205,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2003-06-04,BICY,521-52,NA,25.8672,-81.353,25.8687,-81.3513,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,60,521,52,-81.35187674504624,25.867786712565994,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-06-02,BICY,355-72,NA,26.007,-81.0699,26.0092,-81.0692,WGS84,314,Cell #AG29,"17N 2876456 E, 493009 N",UTM,WGS84,1,30,355,72,-81.06900099418787,26.008407048664903,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-17,BICY,163-32,NA,26.0432,-81.0379,26.0411,-81.0375,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,180,163,32,-81.0379,26.042477904365153,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-11-26,BICY,476-8,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,8,-80.88459971924343,25.806043656567812,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2002-06-12,BICY,138-23,NA,26.0416,-81.0282,26.0417,-81.0256,WGS84,314,"Cell #AK25, Middle Pines, east of Cal Stone","17N 2880288 E, 497181 N",UTM,WGS84,1,90,138,23,-81.02762547356198,26.041599998857603,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-21,BICY,452-56,NA,26.0064,-80.9098,26.0048,-80.908,WGS84,314,Cell #AW29,"17N 2876396 E, 509026 N",UTM,WGS84,1,140,452,56,-80.90890111407545,26.005431966900517,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-05-06,BICY,340-46,NA,26.2422,-81.0507,26.2425,-81.0531,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,280,340,46,-81.05183353357357,26.242380239512975,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-07-11,BICY,154-58,NA,26.1057,-81.284,26.1051,-81.2863,WGS84,314,Cell #K18,"17N 2887417 E, 471604 N",UTM,WGS84,1,270,154,58,-81.28544959485284,26.10569999271476,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2004-04-28,BICY,406-7,NA,25.8144,-81.0821,25.8152,-81.0841,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,300,406,7,-81.082251139649415,25.814478981621118,species,A,A,A +Thalia geniculata,"Alligatorflag, Fireflag",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thalgeni,Human Observation,2002-08-01,BICY,255-27,NA,26.1693,-81.2554,26.1675,-81.2543,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,170,255,27,-81.25528275733059,26.168699998411185,species,A,A,A +Panicum repens,Torpedo grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirepe,Human Observation,2004-05-20,BICY,392-99,NA,26.2529,-80.8936,26.2547,-80.895,WGS84,314,Cell #AX02,"17N 2903700 E, 510627 N",UTM,WGS84,1,330,392,99,-80.89483872983098,26.25483462432435,species,A,A,A +Thelypteris interrupta,"Interrupted maiden fern, Hottentot fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelinte,Human Observation,2004-05-05,BICY,330-79,NA,26.2506,-81.0295,26.2484,-81.0298,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,185,330,79,-81.02967229479172,26.24882416091436,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-12,BICY,361-97,NA,25.9514,-80.9266,25.9534,-80.9257,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,300,361,97,-80.92869679975038,25.952494424772134,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-06-01,BICY,316-92,NA,25.9346,-81.0368,25.9352,-81.0391,WGS84,314,Cell #AJ37,"17N 2868446 E, 496319 N",UTM,WGS84,1,300,316,92,-81.03878843419596,25.93563801428814,species,A,A,A +Woodwardia virginica,Virginia chain fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,woodvirg,Human Observation,2004-06-22,BICY,311-59,NA,26.1685,-81.2779,26.1706,-81.2771,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,25,311,59,-81.27727647236857,26.16970660292461,species,A,A,A +Cassytha filiformis,"Lovevine, Devil's gut",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cassfili,Human Observation,2002-09-17,BICY,223-13,NA,25.6988,-80.9736,25.7,-80.9758,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,310,223,13,-80.97384804300451,25.69898857133994,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-04-29,BICY,606-24,NA,25.8642,-81.2501,25.8627,-81.2519,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,230,606,24,-81.25055855897027,25.86385187508352,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-05-13,BICY,428-36,NA,25.8978,-81.2753,25.8964,-81.2736,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,130,428,36,-81.27461196789078,25.897277814491705,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-02,BICY,198-70,NA,25.8494,-80.995,25.8499,-80.9928,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,80,198,70,-80.99328079492201,25.84967428906325,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2002-05-31,BICY,203-52,NA,26.2044,-81.066,26.2044,-81.066,WGS84,314,Cell #AG07 (was mislabeled as AD31),"17N 2898326 E, 493407 N",UTM,WGS84,1,50,203,52,-81.0650035760271,26.20515423005808,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-02,BICY,357-34,NA,25.9555,-81.0064,25.9541,-81.0084,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,240,357,34,-81.00713497701912,25.955116380185586,species,A,A,A +Woodwardia virginica,Virginia chain fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,woodvirg,Human Observation,2002-06-05,BICY,266-79,NA,26.0245,-81.154,26.0245,-81.154,WGS84,314,Cell #X27,"17N 2878407 E, 484596 N",UTM,WGS84,1,200,266,79,-81.15467482602739,26.022824828752604,species,A,A,A +Pteridium aquilinum var. caudatum,Lacy braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquicaud,Human Observation,2004-06-02,BICY,354-43,NA,26.007,-81.0699,26.0067,-81.0674,WGS84,314,Cell #AG29,"17N 2876456 E, 493009 N",UTM,WGS84,1,100,354,43,-81.06884251523772,26.006831501688968,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-04-29,BICY,607-50,NA,25.8642,-81.2501,25.8662,-81.252,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,320,607,50,-81.25090162622686,25.865064327416114,species,A,A,A +Rhynchospora miliacea,Millet beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmili,Human Observation,2003-04-24,BICY,613-67,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,67,-81.08503199635854,25.720860435728586,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-09-17,BICY,196-4,NA,25.7085,-80.9687,25.7096,-80.9668,WGS84,314,Cell #AQ62,"17N 2843408 E, 503144 N",UTM,WGS84,1,135,196,4,-80.96862954546704,25.708436172201857,species,A,A,A +Tillandsia setacea,"Thin-leaved wild-pine, Southern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillseta,Human Observation,2004-04-14,BICY,416-63,NA,26.2163,-81.0953,26.2174,-81.0932,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,70,416,63,-81.09381899544377,26.216786205305908,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-05-23,BICY,528-67,NA,25.801,-80.934,25.7989,-80.9342,WGS84,314,Cell #AT52,"17N 2853648 E, 506615 N",UTM,WGS84,1,185,528,67,-80.93414556800218,25.799493814963455,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2003-05-22,BICY,523-44,NA,25.9615,-80.8461,25.963,-80.8442,WGS84,314,Cell #BC34,"17N 2871431 E, 515404 N",UTM,WGS84,1,50,523,44,-80.84525861139564,25.962138216630755,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-20,BICY,133-52,NA,25.8641,-81.1359,25.8662,-81.1356,WGS84,314,"Cell #Z45, New River Strand S of Tamiami Trail","17N 2860637 E, 486384 N",UTM,WGS84,1,5,133,52,-81.13578695938376,25.865268968962408,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-04-24,BICY,613-28,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,28,-81.08478053450835,25.720010331540596,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2002-08-29,BICY,248-46,NA,25.7858,-81.0958,25.7836,-81.0971,WGS84,314,Cell #AD54,"17N 2851968 E, 490392 N",UTM,WGS84,1,210,248,46,-81.09637328395115,25.78490102176433,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-08-07,BICY,259-17,NA,26.1609,-81.2653,26.163,-81.2655,WGS84,314,Cell #M12,"17N 2893533 E, 473488 N",UTM,WGS84,1,0,259,17,-81.2653,26.1612836070156,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2004-06-10,BICY,314-89,NA,26.1551,-81.1871,26.1553,-81.1895,WGS84,314,Cell #U13,"17N 2892878 E, 481301 N",UTM,WGS84,1,270,314,89,-81.18932531422588,26.15509998280862,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-03-30,BICY,391-13,NA,26.1527,-80.8913,26.1549,-80.891,WGS84,314,Cell #AX13,"17N 2892602 E, 510865 N",UTM,WGS84,1,10,391,13,-80.89124355738787,26.152988890268055,species,A,A,A +Rhizophora mangle,Red mangrove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhizmang,Human Observation,2004-03-25,BICY,374-61,NA,25.8429,-81.3738,25.8427,-81.3759,WGS84,314,Cell #B47,"17N 2858345 E, 462537 N",UTM,WGS84,1,270,374,61,-81.37532118937166,25.84289999203457,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-08,BICY,348-54,NA,25.8547,-81.0005,25.8568,-81.0001,WGS84,314,Cell #AM46,"17N 2859588 E, 499945 N",UTM,WGS84,1,30,348,54,-80.99982661387453,25.855755309242273,species,A,A,A +Saccharum giganteum,Sugarcane plumegrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,saccgiga,Human Observation,2002-06-17,BICY,142-97,NA,25.8434,-81.104,25.8432,-81.1015,WGS84,314,"Cell #AC47, W of Monroe Station, S of Tamiami Trai","17N 2858349 E, 489583 N",UTM,WGS84,1,100,142,97,-81.10161780626372,25.84301987975998,species,A,A,A +Psychotria sulzneri,Shortleaf wild coffee,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psycsulz,Human Observation,2002-07-31,BICY,253-53,NA,26.0454,-81.3423,26.0451,-81.3397,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,110,253,53,-81.341055896933,26.044990948639054,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-21,BICY,240-25,NA,25.9999,-80.9093,26.0006,-80.907,WGS84,314,Cell #AW30,"17N 2875680 E, 509076 N",UTM,WGS84,1,80,240,25,-80.90868521885282,25.999997960674026,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-12,BICY,158-82,NA,25.7641,-80.8619,25.7619,-80.8615,WGS84,314,"Cell #BA56, Lysiloma Hammock","17N 2849565 E, 513849 N",UTM,WGS84,1,180,158,82,-80.8619,25.762249558565728,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-03-03,BICY,384-64,NA,26.1907,-81.3054,26.1888,-81.3065,WGS84,314,Cell #I09,"17N 2896843 E, 469487 N",UTM,WGS84,1,210,384,64,-81.30620034748266,26.18944931699202,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-05-23,BICY,530-65,NA,25.8048,-80.9224,25.8066,-80.9227,WGS84,314,Cell #AU51,"17N 2854064 E, 507777 N",UTM,WGS84,1,5,530,65,-80.92225876929028,25.80626122308807,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-05-27,BICY,527-91,NA,25.7363,-80.8579,25.7383,-80.8588,WGS84,314,Cell #BB59,"17N 2846491 E, 514249 N",UTM,WGS84,1,345,527,91,-80.85848682684382,25.73828357190053,NA,A,R,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2002-05-21,BICY,216-44,NA,26.2511,-80.9297,26.2535,-80.9293,WGS84,314,Cell #AU02,"17N 2903494 E, 507020 N",UTM,WGS84,1,5,216,44,-80.92960403566165,26.252089074584948,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2004-04-01,BICY,402-55,NA,26.1781,-81.0927,26.1782,-81.0902,WGS84,314,Cell #AD10,"17N 2895406 E, 490734 N",UTM,WGS84,1,90,402,55,-81.09132453601654,26.17809999342804,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-08-01,BICY,254-49,NA,26.1693,-81.2554,26.1694,-81.2578,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,280,254,49,-81.25660670795796,26.169491995915624,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-07-18,BICY,165-37,NA,25.9962,-81.081,25.9955,-81.0835,WGS84,314,Cell #AE30,"17N 2875262 E, 491889 N",UTM,WGS84,1,260,165,37,-81.08190984572684,25.99605501333051,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-05-20,BICY,401-93,NA,26.2504,-80.8822,26.2511,-80.8799,WGS84,314,Cell #AY02,"17N 2903418 E, 511768 N",UTM,WGS84,1,80,401,93,-80.87990812635387,26.250764387613103,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-10-29,BICY,279-57,NA,26.1134,-81.2906,26.1113,-81.2902,WGS84,314,Cell #J17,"17N 2888274 E, 470944 N",UTM,WGS84,1,175,279,57,-81.29047583098846,26.112118674016592,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2002-09-19,BICY,220-10,NA,26.1911,-80.8875,26.1922,-80.8853,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,60,220,10,-80.88728339634741,26.191212824958466,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-20,BICY,141-32,NA,25.8358,-80.9002,25.8353,-80.8977,WGS84,314,Cell #AX48; south of dade-collier airport,"17N 2857500 E, 510001 N",UTM,WGS84,1,100,141,32,-80.89941417017701,25.835674603698543,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-05-26,BICY,358-84,NA,25.8254,-81.0222,25.824,-81.0243,WGS84,314,Cell #AK49,"17N 2856346 E, 497776 N",UTM,WGS84,1,240,358,84,-81.0240138277168,25.824452209651966,NA,A,R,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-09,BICY,442-3,NA,25.7911,-81.0952,25.7893,-81.0965,WGS84,314,Cell #AD53,"17N 2852556 E, 490453 N",UTM,WGS84,1,215,442,3,-81.09524289205767,25.791044544369086,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-14,BICY,417-69,NA,26.2163,-81.0953,26.2149,-81.0936,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,140,417,69,-81.0941904665914,26.21510727879857,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-07-31,BICY,194-42,NA,26.0499,-81.3429,26.0503,-81.3446,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,290,194,42,-81.34388593677134,26.05022414607968,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-06-05,BICY,265-34,NA,26.0206,-81.1546,26.0204,-81.1545,WGS84,314,Cell #X28,"17N 2877975 E, 484532 N",UTM,WGS84,1,210,265,34,-81.15502457198703,26.019935559564363,species,A,A,A +Amphicarpum muhlenbergianum,Blue-maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,amphmuhl,Human Observation,2004-04-07,BICY,432-50,NA,26.25,-81.2548,26.2478,-81.2547,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,180,432,50,-81.2548,26.248871757932104,species,A,A,A +Quercus virginiana,Virginia live oak,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,quervirg,Human Observation,2002-06-17,BICY,144-77,NA,25.8329,-81.1112,25.8352,-81.1114,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,5,144,77,-81.11103265605861,25.834630980610356,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-02-12,BICY,485-70,NA,25.971800000000002,-81.0295,25.9706,-81.0277,WGS84,314,Cell #AK33,"17N 2872562 E, 497044 N",UTM,WGS84,1,130,485,70,-81.02816132937303,25.97078464660914,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-12,BICY,488-15,NA,25.9843,-81.0229,25.9831,-81.0247,WGS84,314,Cell #AK32,"17N 2873950 E, 497711 N",UTM,WGS84,1,240,488,15,-81.02322433412235,25.98413075709959,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2004-06-03,BICY,353-75,NA,26.0243,-81.0653,26.0246,-81.0678,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,295,353,75,-81.06699768880996,26.025015235896745,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-04-01,BICY,327-80,NA,26.179,-81.0835,26.1788,-81.0859,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,270,327,80,-81.08550069025074,26.178999986095143,species,A,A,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2004-04-02,BICY,395-43,NA,26.2527,-80.9439,26.2531,-80.9415,WGS84,314,Cell #AS02,"17N 2903676 E, 505602 N",UTM,WGS84,1,80,395,43,-80.94284029739715,26.25286848478675,species,A,A,A +Thalia geniculata,"Alligatorflag, Fireflag",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thalgeni,Human Observation,2004-04-29,BICY,404-10,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,10,-81.03046026576222,25.820927132947574,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-09,BICY,184-65,NA,25.7734,-80.8414,25.7729,-80.8438,WGS84,314,"Cell #BC55, Point B29W","17N 2850603 E, 515906 N",UTM,WGS84,1,260,184,65,-80.84299537933317,25.77314528214674,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2002-06-04,BICY,200-91,NA,25.9853,-81.0968,25.9865,-81.0948,WGS84,314,Cell #AD31,"17N 2874060 E, 490313 N",UTM,WGS84,1,60,200,91,-81.09483233643263,25.986326724451057,species,A,A,A +Bursera simaruba,Gumbo-limbo,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,burssima,Human Observation,2003-11-26,BICY,476-98,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,98,-80.88572154269822,25.804284788011685,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-04-15,BICY,386-44,NA,26.2539,-81.0377,26.2524,-81.0396,WGS84,314,Cell #AJ02,"17N 2903800 E, 496238 N",UTM,WGS84,1,235,386,44,-81.0386019511163,26.253330520402816,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2003-02-11,BICY,482-87,NA,25.963,-81.0302,25.9653,-81.0305,WGS84,314,Cell #AJ34,"17N 2871588 E, 496977 N",UTM,WGS84,1,0,482,87,-81.0302,25.964963218917358,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-11-05,BICY,272-74,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,74,-81.22105904138644,25.907567879723235,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-01-03,BICY,461-60,NA,26.1999,-80.9036,26.1995,-80.9062,WGS84,314,Cell #AW08,"17N 2897822 E, 509630 N",UTM,WGS84,1,260,461,60,-80.9050779821917,26.19966489016844,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2002-07-10,BICY,153-37,NA,26.0821,-81.3342,26.0798,-81.3337,WGS84,314,"Cell #F21, W of Prairie Fire Trail","17N 2884819 E, 466581 N",UTM,WGS84,1,170,153,37,-81.33403945365347,26.081277765615344,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-28,BICY,406-86,NA,25.8144,-81.0821,25.8152,-81.0841,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,300,406,86,-81.08395687244807,25.815370334677088,species,A,A,A +Nephrolepis biserrata,Giant sword fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephbise,Human Observation,2004-04-29,BICY,404-51,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,51,-81.03111735052168,25.820218376142016,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-10-31,BICY,275-14,NA,25.9152,-81.2644,25.9145,-81.262,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,100,275,14,-81.26405596933301,25.91514514024024,NA,A,R,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-03-24,BICY,371-37,NA,25.9769,-81.3355,25.9771,-81.333,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,90,371,37,-81.3345762681646,25.976899997052,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-02-04,BICY,471-13,NA,25.8376,-81.016,25.8394,-81.0174,WGS84,314,Cell #AL48,"17N 2857701 E, 498394 N",UTM,WGS84,1,330,471,13,-81.01616208707374,25.8378540568264,NA,A,R,A +Solidago stricta,"Narrow-leaved goldenrod, Wand goldenrod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,solistri,Human Observation,2002-11-08,BICY,271-7,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,7,-81.00557178558736,25.75612743017503,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2004-04-07,BICY,439-9,NA,26.2498,-81.2265,26.2518,-81.2263,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,0,439,9,-81.2265,26.250003083559058,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2004-04-28,BICY,406-49,NA,25.8144,-81.0821,25.8152,-81.0841,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,300,406,49,-81.08315798175585,25.81495286802978,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-05-04,BICY,345-4,NA,25.8178,-80.8904,25.8179,-80.8928,WGS84,314,Cell #AX50,"17N 2855514 E, 510987 N",UTM,WGS84,1,270,345,4,-80.89049972908667,25.817799999965786,NA,A,R,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-11,BICY,160-12,NA,26.0975,-81.2848,26.0998,-81.2851,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,0,160,12,-81.2848,26.09777078380727,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2002-10-31,BICY,275-45,NA,25.9152,-81.2644,25.9145,-81.262,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,100,275,45,-81.26329418827487,25.915023662150993,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-02-13,BICY,477-49,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,49,-81.01588766105792,25.927611071844794,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2002-05-29,BICY,205-39,NA,25.9464,-81.2971,25.9466,-81.2971,WGS84,314,Cell #J36,"17N 2869783 E, 470257 N",UTM,WGS84,1,270,205,39,-81.29807341232043,25.9463999967291,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-05-31,BICY,129-22,NA,26.2159,-81.0498,26.2163,-81.0475,WGS84,314,"Cell #AIO6, Kissimmee Billy Area","17N 2899596 E, 495029 N",UTM,WGS84,1,80,129,22,-81.0492579976137,26.215986202939067,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2002-07-11,BICY,155-65,NA,26.1057,-81.284,26.1035,-81.2833,WGS84,314,Cell #K18,"17N 2887417 E, 471604 N",UTM,WGS84,1,170,155,65,-81.28371790402126,26.104255538733803,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2004-04-28,BICY,406-92,NA,25.8144,-81.0821,25.8152,-81.0841,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,300,406,92,-81.08408642281783,25.81543803155527,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-12,BICY,157-42,NA,25.7641,-80.8619,25.7635,-80.8642,WGS84,314,"Cell #BA56, Lysiloma Hammock","17N 2849565 E, 513849 N",UTM,WGS84,1,270,157,42,-80.86294668383901,25.764099996237032,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2002-08-28,BICY,229-65,NA,26.0141,-80.8956,26.0125,-80.894,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,140,229,65,-80.8945565835934,26.01297639081458,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2004-03-30,BICY,391-38,NA,26.1527,-80.8913,26.1549,-80.891,WGS84,314,Cell #AX13,"17N 2892602 E, 510865 N",UTM,WGS84,1,10,391,38,-80.8911350131217,26.153544448381115,species,A,A,A +Conoclinium coelestinum,Blue mistflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,conocoel,Human Observation,2004-04-07,BICY,439-49,NA,26.2498,-81.2265,26.2518,-81.2263,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,0,439,49,-81.2265,26.250905677085388,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-08-29,BICY,251-67,NA,25.784300000000002,-81.0757,25.7827,-81.0774,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,230,251,67,-81.07697927817061,25.783328136944732,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-06-17,BICY,337-21,NA,26.1778,-81.2369,26.1803,-81.2368,WGS84,314,Cell #P10,"17N 2895396 E, 476332 N",UTM,WGS84,1,0,337,21,-81.2369,26.17827386637435,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-16,BICY,335-8,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,8,-81.09839983881777,26.232899999860624,species,A,A,A +Thelypteris interrupta,"Interrupted maiden fern, Hottentot fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelinte,Human Observation,2002-08-01,BICY,255-88,NA,26.1693,-81.2554,26.1675,-81.2543,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,170,255,88,-81.25501788016253,26.16734443873045,species,A,A,A +Tillandsia balbisiana,"Reflexed wild-pine, Northern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillbalb,Human Observation,2003-02-21,BICY,498-11,NA,26.0064,-80.9098,26.0064,-80.9073,WGS84,314,Cell #AW29,"17N 2876396 E, 509026 N",UTM,WGS84,1,95,498,11,-80.90952635378332,26.006378365800863,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-29,BICY,404-71,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,71,-81.0314378768338,25.81987264001187,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2002-10-31,BICY,275-26,NA,25.9152,-81.2644,25.9145,-81.262,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,100,275,26,-81.26376108615759,25.91509811693887,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-28,BICY,208-26,NA,26.2207,-81.1821,26.2226,-81.1838,WGS84,314,Cell #U05,"17N 2900139 E, 481814 N",UTM,WGS84,1,325,208,26,-81.18247308775311,26.2211805863559,NA,A,R,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-26,BICY,414-82,NA,26.2242,-81.0649,26.2242,-81.0674,WGS84,314,Cell #AG05,"17N 2900516 E, 493515 N",UTM,WGS84,1,270,414,82,-81.06695149946655,26.224199985362212,species,A,A,A +Elionurus tripsacoides,Pan-American balsamscale,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eliotrip,Human Observation,2004-06-24,BICY,323-9,NA,26.2493,-81.0753,26.2505,-81.0773,WGS84,314,Cell #AF02,"17N 2903294 E, 492483 N",UTM,WGS84,1,300,323,9,-81.07549504029157,26.249401541654922,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-29,BICY,419-69,NA,25.8155,-81.0426,25.8165,-81.0447,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,300,419,69,-81.04408982762844,25.81627852610696,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2002-07-10,BICY,150-10,NA,26.0769,-81.3107,26.0753,-81.3127,WGS84,314,Cell #H21,"17N 2884234 E, 468923 N",UTM,WGS84,1,230,150,10,-81.31089141049704,26.076754952391212,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-05-08,BICY,174-19,NA,25.9,-81.0625,25.8982,-81.0612,WGS84,314,Cell #AG41,"17N 2864610 E, 493737 N",UTM,WGS84,1,150,174,19,-81.06226298029705,25.899628689027427,NA,A,R,A +Rhus copallinum,Winged sumac,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhuscopa,Human Observation,2004-04-01,BICY,327-71,NA,26.179,-81.0835,26.1788,-81.0859,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,270,327,71,-81.08527561259757,26.178999989047753,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2002-11-05,BICY,294-9,NA,26.0816,-81.2488,26.0798,-81.2476,WGS84,314,Cell #O21,"17N 2884745 E, 475114 N",UTM,WGS84,1,150,294,9,-81.24868755464323,26.08142412032108,species,A,A,A +Rhynchospora tracyi,Tracy's beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyntrac,Human Observation,2002-08-27,BICY,235-12,NA,26.0528,-80.905,26.0506,-80.905,WGS84,314,"Cell #AW24, endpoint estimated using arcmap","17N 2881537 E, 509501 N",UTM,WGS84,1,180,235,12,-80.905,26.052529214505338,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-06-17,BICY,145-51,NA,25.8329,-81.1112,25.8339,-81.1134,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,305,145,51,-81.1122417273034,25.833560110025378,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-05-31,BICY,203-93,NA,26.2044,-81.066,26.2044,-81.066,WGS84,314,Cell #AG07 (was mislabeled as AD31),"17N 2898326 E, 493407 N",UTM,WGS84,1,50,203,93,-81.0642179249942,26.20574890652723,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-02-11,BICY,483-91,NA,25.9591,-81.0174,25.9591,-81.0199,WGS84,314,Cell #AL34,"17N 2871156 E, 498259 N",UTM,WGS84,1,270,483,91,-81.01967153913365,25.959099982181773,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-03-30,BICY,389-28,NA,26.1428,-80.8861,26.142,-80.8883,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,250,389,28,-80.88675780755968,26.14258390164379,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-08-02,BICY,199-55,NA,25.8494,-80.995,25.8502,-80.9974,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,295,199,55,-80.99624313273061,25.8499245209863,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-04-15,BICY,387-10,NA,26.2539,-81.0377,26.2532,-81.0356,WGS84,314,Cell #AJ02,"17N 2903800 E, 496238 N",UTM,WGS84,1,120,387,10,-81.03748328042805,26.253787175698967,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2002-05-21,BICY,215-21,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,21,-80.90607458858165,26.230299999039712,species,A,A,A +Fuirena scirpoidea,Southern umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirscir,Human Observation,2002-08-27,BICY,230-77,NA,26.043,-80.9091,26.0433,-80.9065,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,90,230,77,-80.90717656256207,26.042999987195273,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-06-17,BICY,143-24,NA,25.8434,-81.104,25.8413,-81.1032,WGS84,314,"Cell #AC47, W of Monroe Station, S of Tamiami Trai","17N 2858349 E, 489583 N",UTM,WGS84,1,170,143,24,-81.10389607146693,25.842866641222123,species,A,A,A +Amphicarpum muhlenbergianum,Blue-maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,amphmuhl,Human Observation,2002-09-19,BICY,220-88,NA,26.1911,-80.8875,26.1922,-80.8853,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,60,220,88,-80.88559387353435,26.192092848382913,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-02-11,BICY,492-4,NA,25.8735,-81.2566,25.8756,-81.2553,WGS84,314,Cell #N44,"17N 2861698 E, 474294 N",UTM,WGS84,1,50,492,4,-81.2565235672608,25.8735580206026,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-05-04,BICY,344-14,NA,25.8178,-80.8904,25.8156,-80.8909,WGS84,314,Cell #AX50,"17N 2855514 E, 510987 N",UTM,WGS84,1,190,344,14,-80.8904606120512,25.817488872963782,NA,A,R,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2004-04-15,BICY,338-12,NA,26.252,-81.045,26.2528,-81.0473,WGS84,314,Cell #AI02,"17N 2903598 E, 495510 N",UTM,WGS84,1,300,338,12,-81.0452600598085,26.25213538876314,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2004-04-06,BICY,434-23,NA,25.8173,-81.1012,25.8187,-81.1007,WGS84,314,Cell #AC50,"17N 2855456 E, 489854 N",UTM,WGS84,1,20,434,23,-81.10100387122024,25.817787721364656,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2004-04-01,BICY,402-84,NA,26.1781,-81.0927,26.1782,-81.0902,WGS84,314,Cell #AD10,"17N 2895406 E, 490734 N",UTM,WGS84,1,90,402,84,-81.09059929137084,26.178099984670503,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-02-05,BICY,466-88,NA,26.1795,-80.9152,26.1814,-80.9138,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,30,466,88,-80.91409959951712,26.18121968419084,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-06-17,BICY,337-81,NA,26.1778,-81.2369,26.1803,-81.2368,WGS84,314,Cell #P10,"17N 2895396 E, 476332 N",UTM,WGS84,1,0,337,81,-81.2369,26.179627770129127,species,A,A,A +Taxodium distichum,Bald cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxodist,Human Observation,2002-08-01,BICY,192-94,NA,26.1696,-81.2652,26.1718,-81.2654,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,355,192,94,-81.26540487394408,26.17171304668553,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2002-08-01,BICY,193-71,NA,26.1696,-81.2652,26.1674,-81.2645,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,170,193,71,-81.26489169698513,26.168022217798246,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-04-01,BICY,403-89,NA,26.1781,-81.0927,26.1803,-81.0924,WGS84,314,Cell #AD10,"17N 2895406 E, 490734 N",UTM,WGS84,1,10,403,89,-81.09231349590463,26.180077779566354,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-08-23,BICY,236-70,NA,25.8448,-81.2201,25.8471,-81.2204,WGS84,314,Cell #Q47,"17N 2858519 E, 477943 N",UTM,WGS84,1,0,236,70,-81.2201,25.846379627221072,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-09-18,BICY,233-83,NA,25.7252,-81.0306,25.7256,-81.033,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,290,233,83,-81.03254308164351,25.725840596751752,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-07-17,BICY,164-57,NA,26.0432,-81.0379,26.0418,-81.0359,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,130,164,57,-81.03680927855248,26.04237322133755,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-17,BICY,144-88,NA,25.8329,-81.1112,25.8352,-81.1114,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,5,144,88,-81.11100874938381,25.834878263505285,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2002-07-11,BICY,154-83,NA,26.1057,-81.284,26.1051,-81.2863,WGS84,314,Cell #K18,"17N 2887417 E, 471604 N",UTM,WGS84,1,270,154,83,-81.28607442022034,26.10569998508085,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-18,BICY,364-7,NA,26.2236,-81.0959,26.222,-81.0973,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,220,364,7,-81.0960125694166,26.223478999820507,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2002-05-28,BICY,208-57,NA,26.2207,-81.1821,26.2226,-81.1838,WGS84,314,Cell #U05,"17N 2900139 E, 481814 N",UTM,WGS84,1,325,208,57,-81.1829179271581,26.2217535918575,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-06-04,BICY,525-16,NA,25.98,-80.8747,25.981,-80.8767,WGS84,314,Cell #AZ32,"17N 2873479 E, 512543 N",UTM,WGS84,1,305,525,16,-80.87502722075153,25.98020708994763,NA,A,R,A +Conocarpus erectus,Buttonwood,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,conoerec,Human Observation,2003-06-04,BICY,520-58,NA,25.8672,-81.353,25.8671,-81.3506,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,90,520,58,-81.35155332753263,25.867199992791033,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-29,BICY,251-54,NA,25.784300000000002,-81.0757,25.7827,-81.0774,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,230,251,54,-81.07673106164845,25.783516708277972,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-10-31,BICY,275-35,NA,25.9152,-81.2644,25.9145,-81.262,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,100,275,35,-81.26353992392951,25.915062849069,NA,A,R,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-08-27,BICY,230-90,NA,26.043,-80.9091,26.0433,-80.9065,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,90,230,90,-80.90685182637131,26.042999982506608,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2004-06-22,BICY,310-74,NA,26.1685,-81.2779,26.1671,-81.2762,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,170,310,74,-81.27757867329474,26.166855550671237,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2003-02-06,BICY,453-55,NA,25.953,-81.3496,25.9508,-81.3501,WGS84,314,Cell #D35,"17N 2870527 E, 464999 N",UTM,WGS84,1,200,453,55,-81.35006953345321,25.95183373038586,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2002-07-18,BICY,165-63,NA,25.9962,-81.081,25.9955,-81.0835,WGS84,314,Cell #AE30,"17N 2875262 E, 491889 N",UTM,WGS84,1,260,165,63,-81.08254919544203,25.995953127380485,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-02-06,BICY,454-38,NA,25.953,-81.3496,25.9516,-81.3514,WGS84,314,Cell #D35,"17N 2870527 E, 464999 N",UTM,WGS84,1,240,454,38,-81.3504214272395,25.952571248048354,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2002-12-20,BICY,464-53,NA,26.0673,-81.3019,26.0695,-81.3018,WGS84,314,Cell #I22,"17N 2883173 E, 469804 N",UTM,WGS84,1,5,464,53,-81.30178458741196,26.06849141568431,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-03-11,BICY,396-54,NA,25.7899,-80.9758,25.7919,-80.9773,WGS84,314,Cell #AP53,"17N 2852419 E, 502423 N",UTM,WGS84,1,325,396,54,-80.97657205609023,25.79089819928609,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2003-05-13,BICY,610-64,NA,26.1457,-81.2422,26.1436,-81.2431,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,210,610,64,-81.24300004035413,26.14444930917816,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-09,BICY,182-20,NA,25.9254,-80.8441,25.927,-80.8422,WGS84,314,Cell #BC38,"17N 2867427 E, 515616 N",UTM,WGS84,1,50,182,20,-80.84371766834109,25.92569010052842,species,A,A,A +Tillandsia setacea,"Thin-leaved wild-pine, Southern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillseta,Human Observation,2003-01-03,BICY,458-46,NA,26.2306,-80.9468,26.2319,-80.9444,WGS84,314,Cell #AS04,"17N 2901222 E, 505314 N",UTM,WGS84,1,60,458,46,-80.94580328333967,26.231118989237313,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-05-18,BICY,364-69,NA,26.2236,-81.0959,26.222,-81.0973,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,220,364,69,-81.09700960265269,26.222407280008397,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-05-05,BICY,331-43,NA,26.2506,-81.0295,26.2527,-81.0285,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,30,331,43,-81.0289619814668,26.25144029301866,NA,A,R,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-31,BICY,321-63,NA,26.1331,-81.0631,26.1352,-81.0633,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,0,321,63,-81.0631,26.134521607854175,species,A,A,A +Rhizophora mangle,Red mangrove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhizmang,Human Observation,2004-03-25,BICY,375-64,NA,25.8429,-81.3738,25.8434,-81.3763,WGS84,314,"Cell #B47,endpoint estimated using arcmap","17N 2858345 E, 462537 N",UTM,WGS84,1,240,375,64,-81.37518216985374,25.842177877819555,species,A,A,A +Tillandsia utriculata,"Giant wild-pine, Giant airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillutri,Human Observation,2002-08-01,BICY,192-56,NA,26.1696,-81.2652,26.1718,-81.2654,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,355,192,56,-81.26532205167302,26.170858836433094,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2002-08-28,BICY,228-58,NA,26.0141,-80.8956,26.0134,-80.8981,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,260,228,58,-80.89702645986932,26.013872721609076,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-06-03,BICY,353-18,NA,26.0243,-81.0653,26.0246,-81.0678,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,295,353,18,-81.06570744343719,26.024471658440273,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-02-06,BICY,454-79,NA,25.953,-81.3496,25.9516,-81.3514,WGS84,314,Cell #D35,"17N 2870527 E, 464999 N",UTM,WGS84,1,240,454,79,-81.35130769732359,25.952108642004475,species,A,A,A +Amphicarpum muhlenbergianum,Blue-maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,amphmuhl,Human Observation,2004-04-02,BICY,395-79,NA,26.2527,-80.9439,26.2531,-80.9415,WGS84,314,Cell #AS02,"17N 2903676 E, 505602 N",UTM,WGS84,1,80,395,79,-80.94195310216915,26.253009535802367,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2003-02-05,BICY,467-61,NA,26.1795,-80.9405,26.1786,-80.9427,WGS84,314,Cell #AS10,"17N 2895569 E, 505946 N",UTM,WGS84,1,250,467,61,-80.94193352617964,26.17902921281956,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-05-31,BICY,203-14,NA,26.2044,-81.066,26.2044,-81.066,WGS84,314,Cell #AG07 (was mislabeled as AD31),"17N 2898326 E, 493407 N",UTM,WGS84,1,50,203,14,-81.06573173327054,26.204603062625544,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-05-23,BICY,530-98,NA,25.8048,-80.9224,25.8066,-80.9227,WGS84,314,Cell #AU51,"17N 2854064 E, 507777 N",UTM,WGS84,1,5,530,98,-80.92218706621945,25.807003074644793,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2002-06-17,BICY,144-2,NA,25.8329,-81.1112,25.8352,-81.1114,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,5,144,2,-81.1111956534657,25.83294496054299,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-06-04,BICY,524-100,NA,25.98,-80.8747,25.9783,-80.8761,WGS84,314,Cell #AZ32,"17N 2873479 E, 512543 N",UTM,WGS84,1,225,524,100,-80.87646536582642,25.9784043541861,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-04-28,BICY,406-83,NA,25.8144,-81.0821,25.8152,-81.0841,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,300,406,83,-81.08389209731841,25.81533648619446,species,A,A,A +Cassytha filiformis,"Lovevine, Devil's gut",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cassfili,Human Observation,2002-09-19,BICY,220-68,NA,26.1911,-80.8875,26.1922,-80.8853,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,60,220,68,-80.88602708693261,26.19186720325253,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2002-07-17,BICY,164-96,NA,26.0432,-81.0379,26.0418,-81.0359,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,130,164,96,-81.0360630042715,26.04180752587444,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-08-21,BICY,240-93,NA,25.9999,-80.9093,26.0006,-80.907,WGS84,314,Cell #AW30,"17N 2875680 E, 509076 N",UTM,WGS84,1,80,240,93,-80.9070130089734,26.00026440047971,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2002-05-09,BICY,183-75,NA,25.9254,-80.8441,25.9234,-80.8439,WGS84,314,Cell #BC38,"17N 2867427 E, 515616 N",UTM,WGS84,1,180,183,75,-80.8441,25.923707560685404,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2002-11-05,BICY,280-70,NA,25.8708,-81.2282,25.8686,-81.228,WGS84,314,Cell #Q44,"17N 2861398 E, 477142 N",UTM,WGS84,1,180,280,70,-81.2282,25.869220378092397,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-06-17,BICY,333-40,NA,25.8815,-81.1742,25.8816,-81.1766,WGS84,314,Cell #V43,"17N 2862570 E, 482551 N",UTM,WGS84,1,260,333,40,-81.17518266477126,25.881343254938653,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2002-11-15,BICY,286-15,NA,25.8652,-81.3462,25.8636,-81.3461,WGS84,314,Cell #E45,"17N 2860800 E, 465316 N",UTM,WGS84,1,180,286,15,-81.3462,25.864861509359002,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2002-08-28,BICY,229-69,NA,26.0141,-80.8956,26.0125,-80.894,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,140,229,69,-80.8944923740018,26.012907245382276,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-04-24,BICY,612-32,NA,25.7194,-81.0846,25.7177,-81.0832,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,150,612,32,-81.08420141453159,25.718774618385467,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2002-05-22,BICY,219-28,NA,25.7737,-81.0393,25.7735,-81.0388,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,155,219,28,-81.0390050792215,25.773127342635146,species,A,A,A +Baccharis glomeruliflora,Silverling,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,baccglom,Human Observation,2003-11-26,BICY,476-20,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,20,-80.88474929761783,25.80580914128499,species,A,A,A +Elytraria caroliniensis var. angustifolia,Narrowleaf Carolina scalystem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,elytcaroangu,Human Observation,2002-08-08,BICY,257-88,NA,26.1826,-80.8868,26.1821,-80.8845,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,110,257,88,-80.8847319111967,26.181920827330956,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-01-04,BICY,459-12,NA,26.2036,-80.9318,26.203,-80.934,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,250,459,12,-80.9320820640969,26.203507387568916,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2004-05-12,BICY,363-81,NA,25.9823,-80.9107,25.982,-80.9132,WGS84,314,Cell #AV32,"17N 2873723 E, 508938 N",UTM,WGS84,1,270,363,81,-80.9127223161197,25.98229998586822,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2002-08-01,BICY,193-56,NA,26.1696,-81.2652,26.1674,-81.2645,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,170,193,56,-81.26495683073348,26.168355552150047,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2004-03-24,BICY,371-6,NA,25.9769,-81.3355,25.9771,-81.333,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,90,371,6,-81.33535020564831,25.976899999922473,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-02-11,BICY,491-26,NA,25.8735,-81.2566,25.8745,-81.2587,WGS84,314,Cell #N44,"17N 2861698 E, 474294 N",UTM,WGS84,1,300,491,26,-81.2571616558755,25.873793357120466,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-02-06,BICY,453-54,NA,25.953,-81.3496,25.9508,-81.3501,WGS84,314,Cell #D35,"17N 2870527 E, 464999 N",UTM,WGS84,1,200,453,54,-81.35006099656393,25.9518549353032,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-07-12,BICY,157-65,NA,25.7641,-80.8619,25.7635,-80.8642,WGS84,314,"Cell #BA56, Lysiloma Hammock","17N 2849565 E, 513849 N",UTM,WGS84,1,270,157,65,-80.86351986784605,25.764099990987226,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-09-18,BICY,225-74,NA,25.7079,-81.0433,25.7099,-81.0433,WGS84,314,Cell #AI62,"17N 2843334 E, 495652 N",UTM,WGS84,1,5,225,74,-81.04313934443759,25.709563568393484,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2002-04-24,BICY,177-64,NA,25.8539,-80.96,25.8543,-80.9575,WGS84,314,Cell #AR46/1812,"17N 2859501 E, 504007 N",UTM,WGS84,1,85,177,64,-80.9584099225389,25.854025864139842,NA,A,R,A +Tripsacum dactyloides,"Eastern gamagrass, Fakahatchee grass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tripdact,Human Observation,2003-11-26,BICY,476-32,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,32,-80.88489887540338,25.805574625840734,species,A,A,A +Andropogon glomeratus var. pumilus,Common bushy bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrglompumi,Human Observation,2004-05-12,BICY,362-21,NA,25.9823,-80.9107,25.98,-80.9103,WGS84,314,Cell #AV32,"17N 2873723 E, 508938 N",UTM,WGS84,1,180,362,21,-80.9107,25.981826120755663,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2003-02-21,BICY,452-20,NA,26.0064,-80.9098,26.0048,-80.908,WGS84,314,Cell #AW29,"17N 2876396 E, 509026 N",UTM,WGS84,1,140,452,20,-80.90947896762079,26.00605427454934,NA,A,R,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2004-04-08,BICY,440-35,NA,26.2229,-81.2349,26.2233,-81.2373,WGS84,314,Cell #P05,"17N 2900391 E, 476537 N",UTM,WGS84,1,290,440,35,-81.23572282521577,26.223170115697435,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2002-11-05,BICY,280-15,NA,25.8708,-81.2282,25.8686,-81.228,WGS84,314,Cell #Q44,"17N 2861398 E, 477142 N",UTM,WGS84,1,180,280,15,-81.2282,25.87046150962017,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-05-09,BICY,182-99,NA,25.9254,-80.8441,25.927,-80.8422,WGS84,314,Cell #BC38,"17N 2867427 E, 515616 N",UTM,WGS84,1,50,182,99,-80.84220743998783,25.926835987641123,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-06-10,BICY,315-4,NA,26.1551,-81.1871,26.1539,-81.1851,WGS84,314,Cell #U13,"17N 2892878 E, 481301 N",UTM,WGS84,1,125,315,4,-81.18701807326325,26.155048228652266,species,A,A,A +Juncus polycephalos,Manyhead rush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,juncpoly,Human Observation,2004-04-01,BICY,402-3,NA,26.1781,-81.0927,26.1782,-81.0902,WGS84,314,Cell #AD10,"17N 2895406 E, 490734 N",UTM,WGS84,1,90,402,3,-81.0926249746918,26.17809999998045,species,A,A,A +Cassytha filiformis,"Lovevine, Devil's gut",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cassfili,Human Observation,2003-02-11,BICY,489-99,NA,26.0752,-81.293,26.0762,-81.2954,WGS84,314,Cell #J21,"17N 2884040 E, 470692 N",UTM,WGS84,1,300,489,99,-81.29514227882372,26.076316970693977,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2004-04-06,BICY,423-32,NA,25.7633,-80.9177,25.765,-80.9164,WGS84,314,Cell #AV56,"17N 2849471 E, 508257 N",UTM,WGS84,1,50,423,32,-80.91708910165129,25.763764170725214,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-06-02,BICY,357-55,NA,25.9555,-81.0064,25.9541,-81.0084,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,240,357,55,-81.00758893103298,25.954879436661777,NA,A,R,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-03-31,BICY,318-48,NA,26.1349,-81.057,26.1348,-81.0596,WGS84,314,Cell #AH15,"17N 2890624 E, 494305 N",UTM,WGS84,1,270,318,48,-81.05819996290961,26.134899995003934,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,NA,Human Observation,2004-04-07,BICY,437-61,NA,26.2515,-81.2499,26.25,-81.2482,WGS84,314,Cell #O02,"17N 2903558 E, 475040 N",UTM,WGS84,1,140,437,61,-81.24891881158993,26.250445570923535,NA,A,R,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2004-04-06,BICY,434-56,NA,25.8173,-81.1012,25.8187,-81.1007,WGS84,314,Cell #AC50,"17N 2855456 E, 489854 N",UTM,WGS84,1,20,434,56,-81.10072246625163,25.81848749497714,species,A,A,A +Taxodium distichum,Bald cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxodist,Human Observation,2003-04-24,BICY,613-82,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,82,-81.08512871340668,25.721187398735886,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2003-01-04,BICY,459-60,NA,26.2036,-80.9318,26.203,-80.934,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,250,459,60,-80.93321031602116,26.203136932301497,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-30,BICY,389-99,NA,26.1428,-80.8861,26.142,-80.8883,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,250,389,99,-80.88842580872736,26.14203592446244,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2004-03-31,BICY,318-40,NA,26.1349,-81.057,26.1348,-81.0596,WGS84,314,Cell #AH15,"17N 2890624 E, 494305 N",UTM,WGS84,1,270,318,40,-81.05799996909136,26.13489999653051,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-07-17,BICY,164-28,NA,26.0432,-81.0379,26.0418,-81.0359,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,130,164,28,-81.03736420509647,26.042793864154078,species,A,A,A +Sesuvium portulacastrum,"Perennial sea-purslane, Shoreline seapurslane",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sesuport,Human Observation,2003-03-25,BICY,445-75,NA,25.8941,-81.3267,25.8932,-81.3289,WGS84,314,Cell #G42,"17N 2863995 E, 467279 N",UTM,WGS84,1,250,445,75,-81.32845827001574,25.893521138551627,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-06-20,BICY,141-77,NA,25.8358,-80.9002,25.8353,-80.8977,WGS84,314,Cell #AX48; south of dade-collier airport,"17N 2857500 E, 510001 N",UTM,WGS84,1,100,141,77,-80.89830909979094,25.83549825795452,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-05-18,BICY,365-41,NA,26.2236,-81.0959,26.2228,-81.0936,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,130,365,41,-81.09511423814358,26.223005315271724,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-04-07,BICY,433-25,NA,26.25,-81.2548,26.2492,-81.2524,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,120,433,25,-81.2542582199449,26.24971793847805,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2004-05-07,BICY,297-54,NA,25.7238,-80.9174,25.7236,-80.9199,WGS84,314,"Cell #AV60, Hess Hammock","17N 2845103 E, 508290 N",UTM,WGS84,1,270,297,54,-80.91874528248609,25.723799993790713,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2002-06-20,BICY,133-56,NA,25.8641,-81.1359,25.8662,-81.1356,WGS84,314,"Cell #Z45, New River Strand S of Tamiami Trail","17N 2860637 E, 486384 N",UTM,WGS84,1,5,133,56,-81.13577826385962,25.86535888964038,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-08-01,BICY,254-48,NA,26.1693,-81.2554,26.1694,-81.2578,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,280,254,48,-81.25658208122542,26.169488077732787,species,A,A,A diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv new file mode 100644 index 0000000..756a8e2 --- /dev/null +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv @@ -0,0 +1,501 @@ +scientificName,vernacularName,namePublishedIn,custom_TaxonAsRecorded,basisOfRecord,eventDate,locality,locationID,fieldNotes,decimalLatitude,decimalLongitude,custom_TransectEndLatitude,custom_TransectEndLongitude,geodeticDatum,coordinateUncertaintyInMeters,locationRemarks,verbatimCoordinates,verbatimCoordinateSystem,verbatimSRS,individualCount,custom_CoordinateBearing,custom_Transect,taxonRank,coordinate_flag,taxonomic_flag,eventDate_flag +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2002-04-24,BICY,178,NA,25.8574,-81.0728,25.8554,-81.0716,WGS84,314,Cell #AF46/1800,"17N 2859896 E, 492708 N",UTM,WGS84,1,160,178,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2004-03-03,BICY,381,NA,26.1969,-81.3017,26.1979,-81.3003,WGS84,314,Cell #I08,"17N 2897525 E, 469858 N",UTM,WGS84,1,80,381,species,A,A,A +Nephrolepis exaltata,Wild Boston fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephexal,Human Observation,2003-02-20,BICY,494,NA,25.9569,-80.947,25.9552,-80.9487,WGS84,314,Cell #AS35,"17N 2870917 E, 505304 N",UTM,WGS84,1,225,494,species,A,A,A +Tillandsia balbisiana,"Reflexed wild-pine, Northern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillbalb,Human Observation,2003-04-29,BICY,606,NA,25.8642,-81.2501,25.8627,-81.2519,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,230,606,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2002-07-11,BICY,160,NA,26.0975,-81.2848,26.0998,-81.2851,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,0,160,species,A,A,A +Nymphoides aquatica,Big floatingheart,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nympaqua,Human Observation,2003-07-01,BICY,704,NA,25.6851,-80.8571,25.6848,-80.8596,WGS84,314,Cell #BB65,"17N 2840821 E, 514337 N",UTM,WGS84,1,260,704,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2004-05-05,BICY,330,NA,26.2506,-81.0295,26.2484,-81.0298,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,185,330,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-07-31,BICY,194,NA,26.0499,-81.3429,26.0503,-81.3446,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,290,194,species,A,A,A +Cephalanthus occidentalis,Common buttonbush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cephocci,Human Observation,2003-06-18,BICY,697,NA,26.047,-81.1762,26.0447,-81.1762,WGS84,314,Cell #V25,"17N 2880903 E, 482375 N",UTM,WGS84,1,190,697,species,A,A,A +Diodia virginiana,"Buttonweed, Virginia buttonweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,diodvirg,Human Observation,2002-05-17,BICY,187,NA,26.0077,-81.2502,26.0055,-81.2512,WGS84,314,Cell #N29/185,"17N 2876558 E, 474962 N",UTM,WGS84,1,200,187,species,A,A,A +Tillandsia paucifolia,"Twisted wild-pine, Potbelly airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillpauc,Human Observation,2003-02-26,BICY,587,NA,26.0342,-81.1123,26.0345,-81.1149,WGS84,314,Cell #AB26,"17N 2879474 E, 488762 N",UTM,WGS84,1,280,587,species,A,A,A +Polygala cruciata,Drumheads,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,polycruc2,Human Observation,2002-07-17,BICY,164,NA,26.0432,-81.0379,26.0418,-81.0359,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,130,164,species,A,A,A +Parthenocissus quinquefolia,"Virginia-creeper, Woodbine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,partquin,Human Observation,2003-04-24,BICY,613,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-11-05,BICY,293,NA,26.0816,-81.2488,26.0816,-81.2464,WGS84,314,Cell #O21,"17N 2884745 E, 475114 N",UTM,WGS84,1,90,293,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-05-15,BICY,642,NA,25.9071,-81.3325,25.9089,-81.3339,WGS84,314,Cell #F40,"17N 2865443 E, 466694 N",UTM,WGS84,1,330,642,species,A,A,A +Thalia geniculata,"Alligatorflag, Fireflag",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thalgeni,Human Observation,2004-04-15,BICY,339,NA,26.252,-81.045,26.2518,-81.0431,WGS84,314,Cell #AI02,"17N 2903598 E, 495510 N",UTM,WGS84,1,100,339,species,A,A,A +Lobelia feayana,Bay lobelia,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lobefeay,Human Observation,2004-04-07,BICY,438,NA,26.2498,-81.2265,26.2476,-81.2262,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,180,438,species,A,A,A +Eragrostis elliottii,Elliott's love grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eragelli,Human Observation,2003-07-01,BICY,703,NA,25.6363,-80.8884,25.638,-80.8869,WGS84,314,Cell #AY70,"17N 2835417 E, 511198 N",UTM,WGS84,1,40,703,species,A,A,A +Hypericum cistifolium,Roundpod St. John's-wort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hypecist,Human Observation,2003-02-21,BICY,593,NA,25.9996,-81.1574,25.9976,-81.1565,WGS84,314,Cell #X30,"17N 2875653 E, 484250 N",UTM,WGS84,1,165,593,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2004-04-02,BICY,427,NA,26.2477,-80.9374,26.2497,-80.9363,WGS84,314,Cell #AT02,"17N 2903122 E, 506250 N",UTM,WGS84,1,30,427,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2003-05-13,BICY,611,NA,26.1457,-81.2422,26.1447,-81.2445,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,265,611,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2004-06-08,BICY,348,NA,25.8547,-81.0005,25.8568,-81.0001,WGS84,314,Cell #AM46,"17N 2859588 E, 499945 N",UTM,WGS84,1,30,348,species,A,A,A +Thalia geniculata,"Alligatorflag, Fireflag",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thalgeni,Human Observation,2003-03-07,BICY,556,NA,25.7601,-80.8737,25.7623,-80.8742,WGS84,314,Cell #AZ56,"17N 2849121 E, 512666 N",UTM,WGS84,1,355,556,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2002-06-04,BICY,269,NA,25.9992,-81.1001,25.9993,-81.1024,WGS84,314,Cell #AC30,"17N 2875600 E, 489986 N",UTM,WGS84,1,200,269,species,A,A,A +Mitreola petiolata,"Miterwort, Lax hornpod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mitrpeti,Human Observation,2003-03-20,BICY,623,NA,25.9562,-81.2046,25.9553,-81.2025,WGS84,314,Cell #S35,"17N 2870852 E, 479514 N",UTM,WGS84,1,115,623,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-05-07,BICY,130,NA,25.8803,-81.2219,25.881,-81.2243,WGS84,314,"Cell #Q43, East of Burns Lake Rd. Q43","17N 2862448 E, 477773 N",UTM,WGS84,1,290,130,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2003-03-20,BICY,637,NA,25.96,-81.1883,25.9606,-81.1856,WGS84,314,Cell #U34,"17N 2871268 E, 481145 N",UTM,WGS84,1,80,637,species,A,A,A +Scleria baldwinii,Baldwin's nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclebald,Human Observation,2003-03-20,BICY,620,NA,25.9603,-81.2025,25.9583,-81.2015,WGS84,314,Cell #S34,"17N 2871303 E, 479727 N",UTM,WGS84,1,160,620,species,A,A,A +Polygala grandiflora,"Candyweed, Showy milkwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,polygran,Human Observation,2002-05-07,BICY,169,NA,25.8341,-81.0889,25.836,-81.0888,WGS84,314,"Cell #AE48, W. of Loop Rd. S of Monroe","17N 2857310 E, 491088 N",UTM,WGS84,1,0,169,species,A,A,A +Oxalis corniculata,"Lady's-sorrel, Common yellow woodsorrel",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,oxalcorn,Human Observation,2004-04-07,BICY,438,NA,26.2498,-81.2265,26.2476,-81.2262,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,180,438,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2002-06-18,BICY,146,NA,26.1543,-81.3354,26.1543,-81.3329,WGS84,314,"Cell #F13, SE of Miles City","17N 2892813 E, 466479 N",UTM,WGS84,1,90,146,species,A,A,A +Pteridium aquilinum var. caudatum,Lacy braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquicaud,Human Observation,2003-02-13,BICY,478,NA,25.9287,-81.0161,25.9302,-81.0177,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,320,478,species,A,A,A +Sagittaria lancifolia,Bulltongue arrowhead,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sagilanc,Human Observation,2004-05-18,BICY,365,NA,26.2236,-81.0959,26.2228,-81.0936,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,130,365,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2003-03-14,BICY,552,NA,26.2265,-81.2674,26.2243,-81.2672,WGS84,314,Cell #M05,"17N 2900793 E, 473289 N",UTM,WGS84,1,180,552,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2002-08-08,BICY,256,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,species,A,A,A +Eragrostis elliottii,Elliott's love grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eragelli,Human Observation,2003-02-19,BICY,595,NA,25.9988,-81.2319,25.9991,-81.2342,WGS84,314,Cell #P30,"17N 2875568 E, 476791 N",UTM,WGS84,1,280,595,species,A,A,A +Physalis walteri,Walter's groundcherry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,physwalt,Human Observation,2002-11-08,BICY,271,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,species,A,A,A +Hypericum brachyphyllum,Coastalplain St. John's-wort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hypebrac,Human Observation,2002-05-21,BICY,215,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2003-03-06,BICY,571,NA,25.9539,-81.1305,25.9533,-81.1327,WGS84,314,Cell #Z35,"17N 2870588 E, 486932 N",UTM,WGS84,1,260,571,species,A,A,A +Paspalidium geminatum,Egyptian paspalidium,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspgemi,Human Observation,2002-04-09,BICY,173,NA,26.1945,-81.2321,26.193,-81.2342,WGS84,314,Cell #3950/P08,"17N 2897240 E, 476808 N",UTM,WGS84,1,240,173,species,A,A,A +Helenium pinnatifidum,Southeastern sneezeweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,helepinn,Human Observation,2004-03-30,BICY,388,NA,26.1428,-80.8861,26.1411,-80.8845,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,145,388,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2003-03-25,BICY,691,NA,25.935,-80.9886,25.9353,-80.9865,WGS84,314,Cell #AO37,"17N 2868490 E, 501141 N",UTM,WGS84,1,55,691,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-04-17,BICY,662,NA,26.2374,-81.0147,26.2353,-81.0143,WGS84,314,Cell #AL04,"17N 2901980 E, 498527 N",UTM,WGS84,1,175,662,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2004-03-03,BICY,384,NA,26.1907,-81.3054,26.1888,-81.3065,WGS84,314,Cell #I09,"17N 2896843 E, 469487 N",UTM,WGS84,1,210,384,species,A,A,A +Cornus foemina,"Stiff cornel, Swamp dogwood, Stiff dogwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cornfoem,Human Observation,2004-06-22,BICY,311,NA,26.1685,-81.2779,26.1706,-81.2771,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,25,311,species,A,A,A +Hypericum hypericoides,St. Andrew's-cross,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hypehype,Human Observation,2003-05-02,BICY,655,NA,26.2526,-81.1916,26.252,-81.1939,WGS84,314,Cell #T02,"17N 2903667 E, 480866 N",UTM,WGS84,1,260,655,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2002-06-17,BICY,145,NA,25.8329,-81.1112,25.8339,-81.1134,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,305,145,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-03-18,BICY,614,NA,25.8982,-81.1038,25.8962,-81.104,WGS84,314,Cell #AC41,"17N 2864411 E, 489601 N",UTM,WGS84,1,190,614,species,A,A,A +Boltonia diffusa,Smallhead Doll's-daisy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,boltdiff,Human Observation,2004-03-11,BICY,399,NA,25.7817,-80.9812,25.7801,-80.9827,WGS84,314,Cell #AO54,"17N 2851513 E, 501882 N",UTM,WGS84,1,225,399,species,A,A,A +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2004-05-13,BICY,430,NA,25.9072,-81.2737,25.9054,-81.2743,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,220,430,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-02-11,BICY,492,NA,25.8735,-81.2566,25.8756,-81.2553,WGS84,314,Cell #N44,"17N 2861698 E, 474294 N",UTM,WGS84,1,50,492,species,A,A,A +Aster bracei,Brace's aster,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,astebrac,Human Observation,2003-03-19,BICY,628,NA,25.9812,-81.1982,25.9817,-81.1957,WGS84,314,Cell #T32,"17N 2873621 E, 480164 N",UTM,WGS84,1,85,628,species,A,A,A +Mikania cordifolia,Florida Keys hempvine,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikacord,Human Observation,2002-07-31,BICY,253,NA,26.0454,-81.3423,26.0451,-81.3397,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,110,253,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-05-23,BICY,528,NA,25.801,-80.934,25.7989,-80.9342,WGS84,314,Cell #AT52,"17N 2853648 E, 506615 N",UTM,WGS84,1,185,528,species,A,A,A +Tillandsia variabilis,"Soft-leaved wild-pine, Leatherleaf airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillvari,Human Observation,2004-04-29,BICY,418,NA,25.8155,-81.0426,25.8146,-81.0412,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,270,418,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-06-10,BICY,346,NA,26.1497,-81.1964,26.1498,-81.194,WGS84,314,Cell #T13,"17N 2892279 E, 480366 N",UTM,WGS84,1,95,346,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-04-07,BICY,439,NA,26.2498,-81.2265,26.2518,-81.2263,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,0,439,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2003-06-04,BICY,519,NA,25.8734,-81.343,25.8715,-81.3442,WGS84,314,Cell #E44,"17N 2861714 E, 465639 N",UTM,WGS84,1,215,519,species,A,A,A +Justicia angusta,Narrow-leaved waterwillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,justangu,Human Observation,2003-04-09,BICY,672,NA,26.0927,-81.1845,26.0907,-81.1855,WGS84,314,Cell #U20,"17N 2885963 E, 481555 N",UTM,WGS84,1,210,672,species,A,A,A +Berchemia scandens,"rattan vine, Alabama supplejack",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bercscan,Human Observation,2003-06-13,BICY,504,NA,26.2456,-81.1057,26.2438,-81.1047,WGS84,314,Cell #AC03,"17N 2902890 E, 489446 N",UTM,WGS84,1,160,504,species,A,A,A +Magnolia virginiana,Sweet-bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,magnvirg,Human Observation,2004-03-24,BICY,424,NA,25.9726,-81.3357,25.9712,-81.3339,WGS84,314,Cell #F33,"17N 2872694 E, 466400 N",UTM,WGS84,1,140,424,species,A,A,A +Iva microcephala,Piedmont marshelder,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ivamicr,Human Observation,2002-09-19,BICY,220,NA,26.1911,-80.8875,26.1922,-80.8853,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,60,220,species,A,A,A +Oxypolis filiformis,"Water dropwort, Water cowbane",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,oxypfili,Human Observation,2003-02-05,BICY,466,NA,26.1795,-80.9152,26.1814,-80.9138,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,30,466,species,A,A,A +Tillandsia usneoides,Spanish-moss,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillusne,Human Observation,2002-11-15,BICY,287,NA,25.8652,-81.3462,25.8656,-81.3485,WGS84,314,Cell #E45,"17N 2860800 E, 465316 N",UTM,WGS84,1,290,287,species,A,A,A +Xyris calcicola,Limestone yelloweyed grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,xyricalc,Human Observation,2003-07-09,BICY,725,NA,26.2036,-81.2441,26.2056,-81.2452,WGS84,314,Cell #O07,"17N 2898250 E, 475610 N",UTM,WGS84,1,340,725,species,A,A,A +Chiococca parvifolia,Pineland snowberry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chioparv,Human Observation,2003-02-20,BICY,598,NA,25.9997,-81.1907,26.0008,-81.1928,WGS84,314,Cell #T30,"17N 2875659 E, 480919 N",UTM,WGS84,1,310,598,species,A,A,A +Cassytha filiformis,"Lovevine, Devil's gut",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cassfili,Human Observation,2004-05-12,BICY,363,NA,25.9823,-80.9107,25.982,-80.9132,WGS84,314,Cell #AV32,"17N 2873723 E, 508938 N",UTM,WGS84,1,270,363,species,A,A,A +Elytraria caroliniensis var. angustifolia,Narrowleaf Carolina scalystem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,elytcaroangu,Human Observation,2002-06-04,BICY,269,NA,25.9992,-81.1001,25.9993,-81.1024,WGS84,314,Cell #AC30,"17N 2875600 E, 489986 N",UTM,WGS84,1,200,269,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-05-21,BICY,215,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,species,A,A,A +Lythrum alatum var. lanceolatum,Winged loosestrife,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lythalatlanc,Human Observation,2004-04-28,BICY,407,NA,25.8144,-81.0821,25.8167,-81.0824,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,0,407,species,A,A,A +Bacopa monnieri,"Water hyssop, Herb-of-grace",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacomonn,Human Observation,2003-09-10,BICY,729,NA,26.2428,-80.9525,26.243,-80.9549,WGS84,314,Cell #AR03,"17N 2902579 E, 504740 N",UTM,WGS84,1,275,729,species,A,A,A +Vittaria lineata,Shoestring fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vittline,Human Observation,2002-08-01,BICY,192,NA,26.1696,-81.2652,26.1718,-81.2654,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,355,192,species,A,A,A +Conoclinium coelestinum,Blue mistflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,conocoel,Human Observation,2003-04-10,BICY,669,NA,26.0691,-81.1605,26.0687,-81.1629,WGS84,314,Cell #W22,"17N 2883351 E, 483950 N",UTM,WGS84,1,265,669,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2004-04-28,BICY,407,NA,25.8144,-81.0821,25.8167,-81.0824,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,0,407,species,A,A,A +Rhynchospora tracyi,Tracy's beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyntrac,Human Observation,2003-06-18,BICY,699,NA,26.0257,-81.2201,26.0263,-81.2225,WGS84,314,Cell #Q27,"17N 2878553 E, 477980 N",UTM,WGS84,1,290,699,species,A,A,A +Eugenia axillaris,White stopper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eugeaxil,Human Observation,2003-11-26,BICY,476,NA,25.8062,-80.8845,25.804,-80.8852,WGS84,314,Cell #AY51,"17N 2854223 E, 511582 N",UTM,WGS84,1,210,476,species,A,A,A +Vitis cinerea var. floridana,Florida grape,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,viticineflor,Human Observation,2003-02-26,BICY,591,NA,26.045,-81.1655,26.0462,-81.1634,WGS84,314,Cell #W25,"17N 2880675 E, 483442 N",UTM,WGS84,1,75,591,species,A,A,A +Sabatia stellaris,Rose-of-Plymouth,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabastel,Human Observation,2004-05-12,BICY,363,NA,25.9823,-80.9107,25.982,-80.9132,WGS84,314,Cell #AV32,"17N 2873723 E, 508938 N",UTM,WGS84,1,270,363,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-09-17,BICY,222,NA,25.6988,-80.9736,25.6966,-80.974,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,200,222,species,A,A,A +Sorghastrum secundum,Lopsided Indian grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sorgsecu,Human Observation,2004-03-17,BICY,376,NA,26.1818,-81.343,26.1797,-81.3438,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,220,376,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-05-31,BICY,203,NA,26.2044,-81.066,26.2044,-81.066,WGS84,314,Cell #AG07 (was mislabeled as AD31),"17N 2898326 E, 493407 N",UTM,WGS84,1,50,203,species,A,A,A +Nymphaea odorata,American white waterlily,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nympodor,Human Observation,2003-06-18,BICY,697,NA,26.047,-81.1762,26.0447,-81.1762,WGS84,314,Cell #V25,"17N 2880903 E, 482375 N",UTM,WGS84,1,190,697,species,A,A,A +Pteris bahamensis,Bahama ladder brake,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pterbaha,Human Observation,2004-06-03,BICY,353,NA,26.0243,-81.0653,26.0246,-81.0678,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,295,353,species,A,A,A +Smilax auriculata,Earleaf greenbrier,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smilauri,Human Observation,2003-03-05,BICY,565,NA,26.0211,-81.1145,26.0233,-81.1148,WGS84,314,Cell #AB27,"17N 2878023 E, 488541 N",UTM,WGS84,1,0,565,species,A,A,A +Stillingia aquatica,"Corkwood, Water toothleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,stilaqua,Human Observation,2004-05-12,BICY,361,NA,25.9514,-80.9266,25.9534,-80.9257,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,300,361,species,A,A,A +Panicum tenerum,Bluejoint panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panitene,Human Observation,2002-09-18,BICY,225,NA,25.7079,-81.0433,25.7099,-81.0433,WGS84,314,Cell #AI62,"17N 2843334 E, 495652 N",UTM,WGS84,1,5,225,species,A,A,A +Quercus virginiana,Virginia live oak,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,quervirg,Human Observation,2002-07-11,BICY,159,NA,26.0975,-81.2848,26.0982,-81.2872,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,295,159,species,A,A,A +Mitreola petiolata,"Miterwort, Lax hornpod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mitrpeti,Human Observation,2002-04-09,BICY,172,NA,26.1945,-81.2321,26.1962,-81.2305,WGS84,314,Cell #3950/P08,"17N 2897240 E, 476808 N",UTM,WGS84,1,40,172,species,A,A,A +Tillandsia setacea,"Thin-leaved wild-pine, Southern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillseta,Human Observation,2003-03-19,BICY,624,NA,25.9787,-81.2113,25.9764,-81.2118,WGS84,314,Cell #R42,"17N 2873345 E, 478851 N",UTM,WGS84,1,195,624,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-02-25,BICY,448,NA,25.9949,-81.2017,25.9955,-81.1994,WGS84,314,Cell #S30,"17N 2875138 E, 479809 N",UTM,WGS84,1,75,448,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2003-03-05,BICY,567,NA,25.9827,-81.1215,25.9819,-81.1236,WGS84,314,Cell #AA32,"17N 2873774 E, 487840 N",UTM,WGS84,1,250,567,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-06-17,BICY,333,NA,25.8815,-81.1742,25.8816,-81.1766,WGS84,314,Cell #V43,"17N 2862570 E, 482551 N",UTM,WGS84,1,260,333,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-03-07,BICY,558,NA,25.7369,-80.9716,25.7351,-80.973,WGS84,314,Cell #AP59,"17N 2846549 E, 502853 N",UTM,WGS84,1,220,558,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-04-10,BICY,666,NA,26.1004,-81.1641,26.0983,-81.1641,WGS84,314,Cell #W19,"17N 2886815 E, 483592 N",UTM,WGS84,1,190,666,species,A,A,A +Iva microcephala,Piedmont marshelder,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ivamicr,Human Observation,2004-04-14,BICY,421,NA,26.2176,-81.0845,26.219,-81.0864,WGS84,314,Cell #AE06,"17N 2899785 E, 491558 N",UTM,WGS84,1,310,421,species,A,A,A +Eriocaulon compressum,Flattened pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriocomp,Human Observation,2003-02-20,BICY,495,NA,25.9569,-80.947,25.9559,-80.9449,WGS84,314,Cell #AS35,"17N 2870917 E, 505304 N",UTM,WGS84,1,125,495,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-02-11,BICY,483,NA,25.9591,-81.0174,25.9591,-81.0199,WGS84,314,Cell #AL34,"17N 2871156 E, 498259 N",UTM,WGS84,1,270,483,species,A,A,A +Evolvulus sericeus,Silver dwarf morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,evolseri,Human Observation,2004-03-11,BICY,396,NA,25.7899,-80.9758,25.7919,-80.9773,WGS84,314,Cell #AP53,"17N 2852419 E, 502423 N",UTM,WGS84,1,325,396,species,A,A,A +Coelorachis rugosa,Wrinkled jointtail grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,coelrugo,Human Observation,2003-03-18,BICY,617,NA,25.9166,-81.1158,25.9143,-81.1156,WGS84,314,Cell #AB39,"17N 2866448 E, 488404 N",UTM,WGS84,1,185,617,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-02-25,BICY,582,NA,26.0014,-81.2179,26.0001,-81.2159,WGS84,314,Cell #R40,"17N 2875853 E, 478198 N",UTM,WGS84,1,130,582,species,A,A,A +Scleria georgiana,Slenderfruit nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclegeor,Human Observation,2003-02-19,BICY,597,NA,26.0084,-81.2316,26.0087,-81.2339,WGS84,314,Cell #P29,"17N 2876637 E, 476826 N",UTM,WGS84,1,280,597,species,A,A,A +Andropogon glomeratus var. pumilus,Common bushy bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrglompumi,Human Observation,2002-11-05,BICY,272,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,species,A,A,A +Rhus copallinum,Winged sumac,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhuscopa,Human Observation,2003-07-09,BICY,725,NA,26.2036,-81.2441,26.2056,-81.2452,WGS84,314,Cell #O07,"17N 2898250 E, 475610 N",UTM,WGS84,1,340,725,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2004-05-12,BICY,360,NA,25.9514,-80.9266,25.9531,-80.928,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,330,360,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2004-05-20,BICY,392,NA,26.2529,-80.8936,26.2547,-80.895,WGS84,314,Cell #AX02,"17N 2903700 E, 510627 N",UTM,WGS84,1,330,392,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-03-07,BICY,556,NA,25.7601,-80.8737,25.7623,-80.8742,WGS84,314,Cell #AZ56,"17N 2849121 E, 512666 N",UTM,WGS84,1,355,556,species,A,A,A +Smilax laurifolia,"Catbrier, Laurel greenbrier, Bamboo vine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smillaur,Human Observation,2003-02-11,BICY,482,NA,25.963,-81.0302,25.9653,-81.0305,WGS84,314,Cell #AJ34,"17N 2871588 E, 496977 N",UTM,WGS84,1,0,482,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2003-06-18,BICY,698,NA,26.0257,-81.2201,26.0279,-81.2208,WGS84,314,Cell #Q27,"17N 2878553 E, 477980 N",UTM,WGS84,1,345,698,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2002-12-20,BICY,463,NA,26.0673,-81.3019,26.0671,-81.3042,WGS84,314,Cell #I22,"17N 2883173 E, 469804 N",UTM,WGS84,1,270,463,species,A,A,A +Vitis cinerea var. floridana,Florida grape,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,viticineflor,Human Observation,2003-06-19,BICY,741,NA,25.8843,-80.8461,25.8826,-80.8465,WGS84,314,Cell #BC43,"17N 2862884 E, 515418 N",UTM,WGS84,1,180,741,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2003-05-02,BICY,510,NA,26.0974,-81.32,26.0996,-81.3195,WGS84,314,Cell #H19,"17N 2886505 E, 468000 N",UTM,WGS84,1,20,510,species,A,A,A +Asclepias tuberosa,"Butterflyweed, Butterfly milkweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ascltube,Human Observation,2002-05-29,BICY,206,NA,26.1989,-81.2169,26.197,-81.2161,WGS84,314,Cell #R08,"17N 2897730 E, 478329 N",UTM,WGS84,1,170,206,species,A,A,A +Pteridium aquilinum var. caudatum,Lacy braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquicaud,Human Observation,2003-02-13,BICY,477,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,species,A,A,A +Psychotria nervosa,Shiny-leaved wild-coffee,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psycnerv,Human Observation,2003-05-29,BICY,539,NA,25.7563,-80.9028,25.7583,-80.9018,WGS84,314,Cell #AW57,"17N 2848699 E, 509752 N",UTM,WGS84,1,35,539,species,A,A,A +Tillandsia utriculata,"Giant wild-pine, Giant airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillutri,Human Observation,2003-09-11,BICY,722,NA,25.7538,-80.9274,25.7554,-80.9255,WGS84,314,Cell #AU57,"17N 2848426 E, 507282 N",UTM,WGS84,1,55,722,species,A,A,A +Fuirena breviseta,Saltmarsh umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirbrev,Human Observation,2002-09-18,BICY,233,NA,25.7252,-81.0306,25.7256,-81.033,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,290,233,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-05-07,BICY,130,NA,25.8803,-81.2219,25.881,-81.2243,WGS84,314,"Cell #Q43, East of Burns Lake Rd. Q43","17N 2862448 E, 477773 N",UTM,WGS84,1,290,130,species,A,A,A +Tillandsia usneoides,Spanish-moss,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillusne,Human Observation,2002-05-21,BICY,215,NA,26.2303,-80.9066,26.2305,-80.9043,WGS84,314,Cell #AW04,"17N 2901187 E, 509327 N",UTM,WGS84,1,90,215,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-04-24,BICY,179,NA,25.8574,-81.0728,25.8572,-81.0752,WGS84,314,Cell #AF46/1800,"17N 2859896 E, 492708 N",UTM,WGS84,1,270,179,species,A,A,A +Eriocaulon compressum,Flattened pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriocomp,Human Observation,2003-07-17,BICY,712,NA,26.0832,-80.9373,26.0812,-80.9367,WGS84,314,Cell #AT21,"17N 2884902 E, 506270 N",UTM,WGS84,1,170,712,species,A,A,A +Tillandsia balbisiana,"Reflexed wild-pine, Northern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillbalb,Human Observation,2002-08-07,BICY,259,NA,26.1609,-81.2653,26.163,-81.2655,WGS84,314,Cell #M12,"17N 2893533 E, 473488 N",UTM,WGS84,1,0,259,species,A,A,A +Tillandsia flexuosa,"Banded wild-pine, Twisted airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillflex,Human Observation,2003-03-26,BICY,693,NA,25.6592,-81.0263,25.6585,-81.024,WGS84,314,Cell #AK68,"17N 2837939 E, 497357 N",UTM,WGS84,1,110,693,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-03-04,BICY,560,NA,26.0296,-81.0943,26.0296,-81.0918,WGS84,314,Cell #AD27,"17N 2878960 E, 490566 N",UTM,WGS84,1,90,560,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-07-11,BICY,155,NA,26.1057,-81.284,26.1035,-81.2833,WGS84,314,Cell #K18,"17N 2887417 E, 471604 N",UTM,WGS84,1,170,155,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2003-02-26,BICY,590,NA,26.045,-81.1655,26.0428,-81.1655,WGS84,314,Cell #W25,"17N 2880675 E, 483442 N",UTM,WGS84,1,190,590,species,A,A,A +Bacopa monnieri,"Water hyssop, Herb-of-grace",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacomonn,Human Observation,2004-05-13,BICY,431,NA,25.9072,-81.2737,25.9078,-81.2714,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,75,431,species,A,A,A +Elytraria caroliniensis var. angustifolia,Narrowleaf Carolina scalystem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,elytcaroangu,Human Observation,2003-02-28,BICY,579,NA,25.7753,-80.9975,25.773,-80.9977,WGS84,314,Cell #AN55,"17N 2850797 E, 500253 N",UTM,WGS84,1,190,579,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2004-06-16,BICY,335,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-04-08,BICY,674,NA,26.0673,-81.1525,26.0695,-81.1521,WGS84,314,"Cell #X22, endpoint corrected using arcmap","17N 2883144 E, 484751 N",UTM,WGS84,1,15,674,species,A,A,A +Cyperus retrorsus,Pinebarren flatsedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cyperetr,Human Observation,2003-09-11,BICY,731,NA,25.7535,-80.9303,25.7514,-80.9309,WGS84,314,Cell #AT57 (originally labeled as #AT54),"17N 2848388 E, 506985 N",UTM,WGS84,1,195,731,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2003-02-26,BICY,590,NA,26.045,-81.1655,26.0428,-81.1655,WGS84,314,Cell #W25,"17N 2880675 E, 483442 N",UTM,WGS84,1,190,590,species,A,A,A +Nephrolepis biserrata,Giant sword fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephbise,Human Observation,2003-05-23,BICY,531,NA,25.8048,-80.9224,25.8046,-80.9249,WGS84,314,Cell #AU51,"17N 2854064 E, 507777 N",UTM,WGS84,1,270,531,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2002-07-10,BICY,151,NA,26.0769,-81.3107,26.0763,-81.3134,WGS84,314,Cell #H21,"17N 2884234 E, 468923 N",UTM,WGS84,1,265,151,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2004-05-13,BICY,430,NA,25.9072,-81.2737,25.9054,-81.2743,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,220,430,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2003-03-14,BICY,552,NA,26.2265,-81.2674,26.2243,-81.2672,WGS84,314,Cell #M05,"17N 2900793 E, 473289 N",UTM,WGS84,1,180,552,species,A,A,A +Diodia virginiana,"Buttonweed, Virginia buttonweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,diodvirg,Human Observation,2003-03-20,BICY,636,NA,25.96,-81.1883,25.958,-81.1872,WGS84,314,Cell #U34,"17N 2871268 E, 481145 N",UTM,WGS84,1,16,636,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2003-02-11,BICY,482,NA,25.963,-81.0302,25.9653,-81.0305,WGS84,314,Cell #AJ34,"17N 2871588 E, 496977 N",UTM,WGS84,1,0,482,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-08-21,BICY,241,NA,25.9999,-80.9093,25.9979,-80.9085,WGS84,314,Cell #AW30,"17N 2875680 E, 509076 N",UTM,WGS84,1,165,241,species,A,A,A +Schoenus nigricans,"Black sedge, Black bogrush",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schonigr,Human Observation,2002-08-22,BICY,243,NA,25.9059,-81.2415,25.9077,-81.243,WGS84,314,Cell #O40,"17N 2865287 E, 475811 N",UTM,WGS84,1,335,243,species,A,A,A +Saccharum giganteum,Sugarcane plumegrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,saccgiga,Human Observation,2002-10-29,BICY,290,NA,26.1255,-81.2857,26.1276,-81.2851,WGS84,314,Cell #K16,"17N 2889619 E, 471434 N",UTM,WGS84,1,25,290,species,A,A,A +Nephrolepis biserrata,Giant sword fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephbise,Human Observation,2003-05-22,BICY,535,NA,25.8002,-81.1769,25.8013,-81.1751,WGS84,314,Cell #V52,"17N 2853574 E, 482264 N",UTM,WGS84,1,60,535,species,A,A,A +Tillandsia setacea,"Thin-leaved wild-pine, Southern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillseta,Human Observation,2003-02-05,BICY,465,NA,26.1795,-80.9152,26.1798,-80.9177,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,280,465,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2003-05-23,BICY,528,NA,25.801,-80.934,25.7989,-80.9342,WGS84,314,Cell #AT52,"17N 2853648 E, 506615 N",UTM,WGS84,1,185,528,species,A,A,A +Utricularia subulata,Zigzag bladderwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,utrisubu,Human Observation,2002-09-18,BICY,232,NA,25.7252,-81.0306,25.723,-81.0311,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,195,232,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2002-09-18,BICY,233,NA,25.7252,-81.0306,25.7256,-81.033,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,290,233,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2004-05-18,BICY,365,NA,26.2236,-81.0959,26.2228,-81.0936,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,130,365,species,A,A,A +Eryngium yuccifolium,"Button snakeroot, Button rattlenakemaster",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,erynyucc,Human Observation,2003-03-06,BICY,572,NA,25.9962,-81.129,25.9944,-81.1277,WGS84,314,Cell #AA30,"17N 2875269 E, 487086 N",UTM,WGS84,1,15,572,species,A,A,A +Spermacoce terminalis,Everglades Keys false buttonweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sperterm,Human Observation,2002-08-23,BICY,247,NA,25.8536,-81.2248,25.8527,-81.2226,WGS84,314,Cell #Q46,"17N 2859495 E, 477474 N",UTM,WGS84,1,120,247,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-04-23,BICY,657,NA,25.7195,-81.1053,25.7217,-81.1056,WGS84,314,Cell #AC61,"17N 2844622 E, 489441 N",UTM,WGS84,1,0,657,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2003-02-06,BICY,456,NA,25.9529,-81.3444,25.9545,-81.3457,WGS84,314,Cell #E35,"17N 2870515 E, 465524 N",UTM,WGS84,1,325,456,species,A,A,A +Fuirena scirpoidea,Southern umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirscir,Human Observation,2002-08-27,BICY,231,NA,26.043,-80.9091,26.0448,-80.9074,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,45,231,species,A,A,A +Cornus foemina,"Stiff cornel, Swamp dogwood, Stiff dogwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cornfoem,Human Observation,2002-08-01,BICY,193,NA,26.1696,-81.2652,26.1674,-81.2645,WGS84,314,Cell #M11,"17N 2894488 E, 473501 N",UTM,WGS84,1,170,193,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-03-28,BICY,627,NA,25.9163,-81.0604,25.9164,-81.0628,WGS84,314,Cell #AG39,"17N 2866413 E, 493955 N",UTM,WGS84,1,280,627,species,A,A,A +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2002-11-05,BICY,272,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2003-02-13,BICY,477,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2003-03-06,BICY,572,NA,25.9962,-81.129,25.9944,-81.1277,WGS84,314,Cell #AA30,"17N 2875269 E, 487086 N",UTM,WGS84,1,15,572,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2002-08-08,BICY,256,NA,26.1826,-80.8868,26.1805,-80.8866,WGS84,314,Cell #AY10,"17N 2895910 E, 511309 N",UTM,WGS84,1,180,256,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-04-23,BICY,657,NA,25.7195,-81.1053,25.7217,-81.1056,WGS84,314,Cell #AC61,"17N 2844622 E, 489441 N",UTM,WGS84,1,0,657,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-06-24,BICY,324,NA,26.2511,-81.0829,26.2508,-81.0807,WGS84,314,Cell #AE02,"17N 2903496 E, 491719 N",UTM,WGS84,1,90,324,species,A,A,A +Xyris difformis var. floridana,Florida yelloweyed grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,xyridiffflor,Human Observation,2003-03-04,BICY,560,NA,26.0296,-81.0943,26.0296,-81.0918,WGS84,314,Cell #AD27,"17N 2878960 E, 490566 N",UTM,WGS84,1,90,560,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2003-04-09,BICY,673,NA,26.0927,-81.1845,26.0912,-81.1826,WGS84,314,Cell #U20,"17N 2885963 E, 481555 N",UTM,WGS84,1,135,673,species,A,A,A +Diodia virginiana,"Buttonweed, Virginia buttonweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,diodvirg,Human Observation,2004-05-05,BICY,330,NA,26.2506,-81.0295,26.2484,-81.0298,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,185,330,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2004-05-18,BICY,367,NA,26.2061,-81.0978,26.2038,-81.0981,WGS84,314,Cell #AD07,"17N 2898512 E, 490230 N",UTM,WGS84,1,190,367,species,A,A,A +Psychotria sulzneri,Shortleaf wild coffee,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psycsulz,Human Observation,2004-03-03,BICY,384,NA,26.1907,-81.3054,26.1888,-81.3065,WGS84,314,Cell #I09,"17N 2896843 E, 469487 N",UTM,WGS84,1,210,384,species,A,A,A +Eryngium yuccifolium,"Button snakeroot, Button rattlenakemaster",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,erynyucc,Human Observation,2002-07-18,BICY,165,NA,25.9962,-81.081,25.9955,-81.0835,WGS84,314,Cell #AE30,"17N 2875262 E, 491889 N",UTM,WGS84,1,260,165,species,A,A,A +Aster carolinianus,Climbing aster,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,astecaro,Human Observation,2003-03-19,BICY,624,NA,25.9787,-81.2113,25.9764,-81.2118,WGS84,314,Cell #R42,"17N 2873345 E, 478851 N",UTM,WGS84,1,195,624,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2003-05-15,BICY,643,NA,25.9071,-81.3325,25.9056,-81.3342,WGS84,314,Cell #F40,"17N 2865443 E, 466694 N",UTM,WGS84,1,230,643,species,A,A,A +Juncus polycephalos,Manyhead rush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,juncpoly,Human Observation,2004-04-28,BICY,407,NA,25.8144,-81.0821,25.8167,-81.0824,WGS84,314,Cell #AE50,"17N 2855128 E, 491772 N",UTM,WGS84,1,0,407,species,A,A,A +Pterocaulon pycnostachyum,Blackroot,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pterpycn,Human Observation,2004-06-24,BICY,322,NA,26.2493,-81.0753,26.2472,-81.0743,WGS84,314,Cell #AF02,"17N 2903294 E, 492483 N",UTM,WGS84,1,20,322,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2004-04-29,BICY,418,NA,25.8155,-81.0426,25.8146,-81.0412,WGS84,314,Cell #AI50,"17N 2855253 E, 495730 N",UTM,WGS84,1,270,418,species,A,A,A +Ficus citrifolia,"Short-leaf fig, Wild banyan tree",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ficucitr,Human Observation,2003-03-11,BICY,639,NA,26.0663,-81.036,26.0683,-81.0369,WGS84,314,Cell #AJ22,"17N 2883026 E, 496401 N",UTM,WGS84,1,340,639,species,A,A,A +Polygala grandiflora,"Candyweed, Showy milkwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,polygran,Human Observation,2003-02-20,BICY,600,NA,26.0039,-81.1881,26.0052,-81.1863,WGS84,314,"Cell #U29, endpoint estimated using arcmap","17N 2876124 E, 481171 N",UTM,WGS84,1,50,600,species,A,A,A +Andropogon virginicus var. glaucus,Chalky bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrvirgglau,Human Observation,2004-03-30,BICY,388,NA,26.1428,-80.8861,26.1411,-80.8845,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,145,388,species,A,A,A +Eriocaulon compressum,Flattened pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriocomp,Human Observation,2002-06-05,BICY,265,NA,26.0206,-81.1546,26.0204,-81.1545,WGS84,314,Cell #X28,"17N 2877975 E, 484532 N",UTM,WGS84,1,210,265,species,A,A,A +Cassytha filiformis,"Lovevine, Devil's gut",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cassfili,Human Observation,2002-07-11,BICY,159,NA,26.0975,-81.2848,26.0982,-81.2872,WGS84,314,Cell #K19,"17N 2886508 E, 471520 N",UTM,WGS84,1,295,159,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2004-06-02,BICY,354,NA,26.007,-81.0699,26.0067,-81.0674,WGS84,314,Cell #AG29,"17N 2876456 E, 493009 N",UTM,WGS84,1,100,354,species,A,A,A +Agalinis linifolia,Flaxleaf false foxglove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,agallini,Human Observation,2003-03-26,BICY,693,NA,25.6592,-81.0263,25.6585,-81.024,WGS84,314,Cell #AK68,"17N 2837939 E, 497357 N",UTM,WGS84,1,110,693,species,A,A,A +Panicum hians,Gaping panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihian,Human Observation,2003-09-11,BICY,723,NA,25.7538,-80.9274,25.7537,-80.9295,WGS84,314,Cell #AU57,"17N 2848426 E, 507282 N",UTM,WGS84,1,270,723,species,A,A,A +Leersia hexandra,Southern cutgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,leerhexa,Human Observation,2002-08-27,BICY,231,NA,26.043,-80.9091,26.0448,-80.9074,WGS84,314,Cell #AW25,"17N 2880453 E, 509098 N",UTM,WGS84,1,45,231,species,A,A,A +Eriocaulon ravenelii,Ravenel's pipewort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eriorave,Human Observation,2002-11-08,BICY,270,NA,25.7556,-81.003,25.7566,-81.0018,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848614 E, 499702 N",UTM,WGS84,1,80,270,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2002-06-04,BICY,200,NA,25.9853,-81.0968,25.9865,-81.0948,WGS84,314,Cell #AD31,"17N 2874060 E, 490313 N",UTM,WGS84,1,60,200,species,A,A,A +Andropogon glomeratus var. pumilus,Common bushy bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrglompumi,Human Observation,2004-03-17,BICY,376,NA,26.1818,-81.343,26.1797,-81.3438,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,220,376,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-06-13,BICY,505,NA,26.2456,-81.1057,26.2441,-81.1071,WGS84,314,Cell #AC03,"17N 2902890 E, 489446 N",UTM,WGS84,1,220,505,species,A,A,A +Panicum tenerum,Bluejoint panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panitene,Human Observation,2004-05-13,BICY,428,NA,25.8978,-81.2753,25.8964,-81.2736,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,130,428,species,A,A,A +Bidens alba var. radiata,Spanish-needles,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bidealbaradi,Human Observation,2003-05-02,BICY,655,NA,26.2526,-81.1916,26.252,-81.1939,WGS84,314,Cell #T02,"17N 2903667 E, 480866 N",UTM,WGS84,1,260,655,species,A,A,A +Schinus terebinthifolius,Brazilian-pepper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,schitere,Human Observation,2004-04-02,BICY,395,NA,26.2527,-80.9439,26.2531,-80.9415,WGS84,314,Cell #AS02,"17N 2903676 E, 505602 N",UTM,WGS84,1,80,395,species,A,A,A +Eryngium yuccifolium,"Button snakeroot, Button rattlenakemaster",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,erynyucc,Human Observation,2004-04-07,BICY,432,NA,26.25,-81.2548,26.2478,-81.2547,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,180,432,species,A,A,A +Cornus foemina,"Stiff cornel, Swamp dogwood, Stiff dogwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cornfoem,Human Observation,2004-03-17,BICY,376,NA,26.1818,-81.343,26.1797,-81.3438,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,220,376,species,A,A,A +Spermacoce terminalis,Everglades Keys false buttonweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sperterm,Human Observation,2003-02-20,BICY,598,NA,25.9997,-81.1907,26.0008,-81.1928,WGS84,314,Cell #T30,"17N 2875659 E, 480919 N",UTM,WGS84,1,310,598,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-24,BICY,371,NA,25.9769,-81.3355,25.9771,-81.333,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,90,371,species,A,A,A +Dalea carnea,Whitetassels,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dalecarncarn,Human Observation,2003-02-20,BICY,601,NA,26.0039,-81.1881,26.0061,-81.1882,WGS84,314,Cell #U29,"17N 2876124 E, 481171 N",UTM,WGS84,1,5,601,species,A,A,A +Juncus polycephalos,Manyhead rush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,juncpoly,Human Observation,2003-02-27,BICY,576,NA,25.9345,-80.9503,25.9345,-80.9527,WGS84,314,Cell #AR37,"17N 2868429 E, 504977 N",UTM,WGS84,1,280,576,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2002-05-08,BICY,135,NA,25.8891,-81.067,25.8905,-81.065,WGS84,314,"Cell #AG42, endpoint estimated using arcmap","17N 2863405 E, 493293 N",UTM,WGS84,1,45,135,species,A,A,A +Campyloneurum phyllitidis,Long strap fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,campphyl,Human Observation,2002-07-31,BICY,253,NA,26.0454,-81.3423,26.0451,-81.3397,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,110,253,species,A,A,A +Rhynchospora colorata,Starrush whitetop,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyncolo,Human Observation,2003-04-10,BICY,668,NA,26.0691,-81.1605,26.0712,-81.1612,WGS84,314,Cell #W22,"17N 2883351 E, 483950 N",UTM,WGS84,1,350,668,species,A,A,A +Ficus citrifolia,"Short-leaf fig, Wild banyan tree",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ficucitr,Human Observation,2004-05-26,BICY,359,NA,25.8254,-81.0222,25.8255,-81.0246,WGS84,314,Cell #AK49,"17N 2856346 E, 497776 N",UTM,WGS84,1,280,359,species,A,A,A +Pteridium aquilinum var. pseudocaudatum,Tailed braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquipseu,Human Observation,2002-06-13,BICY,137,NA,26.0401,-81.0673,26.0401,-81.0649,WGS84,314,"Cell #AG25, Middle Pines, near Cal Stone","17N 2880124 E, 493267 N",UTM,WGS84,1,95,137,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2003-04-16,BICY,660,NA,26.2547,-81.0622,26.2528,-81.0628,WGS84,314,Cell #AG02,"17N 2903897 E, 493787 N",UTM,WGS84,1,200,660,species,A,A,A +Saccharum giganteum,Sugarcane plumegrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,saccgiga,Human Observation,2003-05-09,BICY,650,NA,25.8993,-81.0752,25.9015,-81.075,WGS84,314,Cell #AF41,"17N 2864531 E, 492472 N",UTM,WGS84,1,10,650,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2004-05-18,BICY,365,NA,26.2236,-81.0959,26.2228,-81.0936,WGS84,314,Cell #AD05,"17N 2900452 E, 490421 N",UTM,WGS84,1,130,365,species,A,A,A +Eugenia axillaris,White stopper,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eugeaxil,Human Observation,2004-06-17,BICY,336,NA,26.1778,-81.2369,26.1795,-81.2386,WGS84,314,Cell #P10,"17N 2895396 E, 476332 N",UTM,WGS84,1,315,336,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2004-03-25,BICY,746,NA,26.1979,-81.0858,26.1978,-81.0836,WGS84,314,"Cell #AE08, bearing corrected using arcmap","17N 2897604 E, 491429 N",UTM,WGS84,1,275,746,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2003-02-13,BICY,477,NA,25.9287,-81.0161,25.9266,-81.0156,WGS84,314,Cell #AL38,"17N 2867787 E, 498386 N",UTM,WGS84,1,170,477,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2004-03-11,BICY,397,NA,25.7899,-80.9758,25.7898,-80.9782,WGS84,314,Cell #AP53,"17N 2852419 E, 502423 N",UTM,WGS84,1,270,397,species,A,A,A +Panicum tenerum,Bluejoint panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panitene,Human Observation,2003-03-04,BICY,560,NA,26.0296,-81.0943,26.0296,-81.0918,WGS84,314,Cell #AD27,"17N 2878960 E, 490566 N",UTM,WGS84,1,90,560,species,A,A,A +Rhynchospora odorata,Fragrant beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynodor,Human Observation,2004-06-22,BICY,313,NA,26.1627,-81.2799,26.1606,-81.2794,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,180,313,species,A,A,A +Rhynchospora odorata,Fragrant beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynodor,Human Observation,2004-06-17,BICY,337,NA,26.1778,-81.2369,26.1803,-81.2368,WGS84,314,Cell #P10,"17N 2895396 E, 476332 N",UTM,WGS84,1,0,337,species,A,A,A +Ficus citrifolia,"Short-leaf fig, Wild banyan tree",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ficucitr,Human Observation,2004-03-31,BICY,321,NA,26.1331,-81.0631,26.1352,-81.0633,WGS84,314,Cell #AG15,"17N 2890423 E, 493688 N",UTM,WGS84,1,0,321,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2002-10-31,BICY,277,NA,25.8982,-81.257,25.8971,-81.2595,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,240,277,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2003-04-10,BICY,668,NA,26.0691,-81.1605,26.0712,-81.1612,WGS84,314,Cell #W22,"17N 2883351 E, 483950 N",UTM,WGS84,1,350,668,species,A,A,A +Euthamia caroliniana,Slender goldenrod,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,euthcaro,Human Observation,2004-04-08,BICY,441,NA,26.2229,-81.2349,26.2209,-81.236,WGS84,314,Cell #P05,"17N 2900391 E, 476537 N",UTM,WGS84,1,210,441,species,A,A,A +Helenium pinnatifidum,Southeastern sneezeweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,helepinn,Human Observation,2004-05-13,BICY,429,NA,25.8978,-81.2753,25.9001,-81.2749,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,10,429,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-02-21,BICY,500,NA,26.0012,-80.9317,25.9991,-80.9313,WGS84,314,Cell #AT30,"17N 2875821 E, 506840 N",UTM,WGS84,1,180,500,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2002-06-20,BICY,132,NA,25.8641,-81.1359,25.8632,-81.138,WGS84,314,"Cell #Z45, New River Strand S of Tamiami Trail","17N 2860637 E, 486384 N",UTM,WGS84,1,250,132,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2002-10-31,BICY,274,NA,25.9152,-81.2644,25.9163,-81.2664,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,305,274,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2002-06-17,BICY,143,NA,25.8434,-81.104,25.8413,-81.1032,WGS84,314,"Cell #AC47, W of Monroe Station, S of Tamiami Trai","17N 2858349 E, 489583 N",UTM,WGS84,1,170,143,species,A,A,A +Mikania cordifolia,Florida Keys hempvine,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikacord,Human Observation,2002-05-31,BICY,128,NA,26.2159,-81.0498,26.2181,-81.0498,WGS84,314,"Cell #AIO6, Kissimmee Billy Area","17N 2899596 E, 495029 N",UTM,WGS84,1,0,128,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2004-05-12,BICY,360,NA,25.9514,-80.9266,25.9531,-80.928,WGS84,314,Cell #AU35,"17N 2870304 E, 507352 N",UTM,WGS84,1,330,360,species,A,A,A +Scleria baldwinii,Baldwin's nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclebald,Human Observation,2002-06-12,BICY,138,NA,26.0416,-81.0282,26.0417,-81.0256,WGS84,314,"Cell #AK25, Middle Pines, east of Cal Stone","17N 2880288 E, 497181 N",UTM,WGS84,1,90,138,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2004-05-06,BICY,340,NA,26.2422,-81.0507,26.2425,-81.0531,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,280,340,species,A,A,A +Pteridium aquilinum var. pseudocaudatum,Tailed braken fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pteraquipseu,Human Observation,2004-05-05,BICY,328,NA,26.2408,-81.0341,26.243,-81.0343,WGS84,314,Cell #AJ03,"17N 2902357 E, 496596 N",UTM,WGS84,1,0,328,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2003-03-28,BICY,626,NA,25.9163,-81.0604,25.9183,-81.0611,WGS84,314,Cell #AG39,"17N 2866413 E, 493955 N",UTM,WGS84,1,350,626,species,A,A,A +Parthenocissus quinquefolia,"Virginia-creeper, Woodbine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,partquin,Human Observation,2002-12-20,BICY,464,NA,26.0673,-81.3019,26.0695,-81.3018,WGS84,314,Cell #I22,"17N 2883173 E, 469804 N",UTM,WGS84,1,5,464,species,A,A,A +Pinguicula pumila,Small butterwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pingpumi,Human Observation,2003-03-18,BICY,615,NA,25.8982,-81.1038,25.8991,-81.1014,WGS84,314,Cell #AC41,"17N 2864411 E, 489601 N",UTM,WGS84,1,65,615,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-02-20,BICY,600,NA,26.0039,-81.1881,26.0052,-81.1863,WGS84,314,"Cell #U29, endpoint estimated using arcmap","17N 2876124 E, 481171 N",UTM,WGS84,1,50,600,species,A,A,A +Fuirena scirpoidea,Southern umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirscir,Human Observation,2003-02-21,BICY,593,NA,25.9996,-81.1574,25.9976,-81.1565,WGS84,314,Cell #X30,"17N 2875653 E, 484250 N",UTM,WGS84,1,165,593,species,A,A,A +Lycium carolinianum,"Christmasberry, Carolina desertthorn",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lycicaro,Human Observation,2003-06-04,BICY,521,NA,25.8672,-81.353,25.8687,-81.3513,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,60,521,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2003-02-05,BICY,468,NA,26.1795,-80.9405,26.1775,-80.9416,WGS84,314,Cell #AS10,"17N 2895569 E, 505946 N",UTM,WGS84,1,210,468,species,A,A,A +Eleocharis geniculata,Canada spikerush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eleogeni,Human Observation,2002-05-28,BICY,211,NA,26.2163,-81.1905,26.2164,-81.1929,WGS84,314,Cell #T06,"17N 2899648 E, 480969 N",UTM,WGS84,1,275,211,species,A,A,A +Aristida purpurascens,Arrowfeather threeawn,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,arispurp,Human Observation,2003-05-02,BICY,510,NA,26.0974,-81.32,26.0996,-81.3195,WGS84,314,Cell #H19,"17N 2886505 E, 468000 N",UTM,WGS84,1,20,510,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2002-11-05,BICY,272,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,species,A,A,A +Boehmeria cylindrica,"Button-hemp, False nettle, Bog hemp",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,boehcyli,Human Observation,2002-10-31,BICY,277,NA,25.8982,-81.257,25.8971,-81.2595,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,240,277,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2002-11-14,BICY,284,NA,26.0767,-81.272,26.0774,-81.2743,WGS84,314,Cell #L21,"17N 2884209 E, 472799 N",UTM,WGS84,1,290,284,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2003-02-25,BICY,583,NA,26.0014,-81.2179,26.0014,-81.2155,WGS84,314,Cell #R40,"17N 2875853 E, 478198 N",UTM,WGS84,1,90,583,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2004-04-28,BICY,408,NA,25.8148,-81.0772,25.817,-81.0776,WGS84,314,Cell #AF50,"17N 2855174 E, 492265 N",UTM,WGS84,1,0,408,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2004-05-04,BICY,342,NA,25.863,-81.1021,25.8628,-81.1046,WGS84,314,Cell #AC45,"17N 2860512 E, 489770 N",UTM,WGS84,1,270,342,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2003-04-17,BICY,665,NA,26.2321,-81.0449,26.2297,-81.0447,WGS84,314,Cell #AI04,"17N 2901387 E, 495513 N",UTM,WGS84,1,180,665,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-11-08,BICY,289,NA,25.748,-80.9377,25.748,-80.9352,WGS84,314,Cell #AT58,"17N 2847783 E, 506247 N",UTM,WGS84,1,95,289,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-02-13,BICY,479,NA,25.9309,-81.0264,25.9302,-81.0289,WGS84,314,Cell #AK37,"17N 2868028 E, 497353 N",UTM,WGS84,1,250,479,species,A,A,A +Parthenocissus quinquefolia,"Virginia-creeper, Woodbine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,partquin,Human Observation,2003-03-12,BICY,542,NA,26.0617,-81.0309,26.0596,-81.0308,WGS84,314,Cell #AJ23,"17N 2882518 E, 496908 N",UTM,WGS84,1,190,542,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2003-02-25,BICY,583,NA,26.0014,-81.2179,26.0014,-81.2155,WGS84,314,Cell #R40,"17N 2875853 E, 478198 N",UTM,WGS84,1,90,583,species,A,A,A +Stillingia aquatica,"Corkwood, Water toothleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,stilaqua,Human Observation,2003-02-26,BICY,584,NA,26.0408,-81.1119,26.0406,-81.1141,WGS84,314,Cell #AB25,"17N 2880202 E, 488804 N",UTM,WGS84,1,270,584,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2004-05-26,BICY,358,NA,25.8254,-81.0222,25.824,-81.0243,WGS84,314,Cell #AK49,"17N 2856346 E, 497776 N",UTM,WGS84,1,240,358,species,A,A,A +Lindernia grandiflora,Savannah false-pimpernel,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lindgran,Human Observation,2004-04-01,BICY,327,NA,26.179,-81.0835,26.1788,-81.0859,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,270,327,species,A,A,A +Dichanthelium commutatum,Variable witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dichcomm,Human Observation,2004-03-17,BICY,379,NA,26.186,-81.343,26.1838,-81.3428,WGS84,314,Cell #E09,"17N 2896326 E, 465728 N",UTM,WGS84,1,180,379,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-08-02,BICY,199,NA,25.8494,-80.995,25.8502,-80.9974,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,295,199,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2002-05-21,BICY,216,NA,26.2511,-80.9297,26.2535,-80.9293,WGS84,314,Cell #AU02,"17N 2903494 E, 507020 N",UTM,WGS84,1,5,216,species,A,A,A +Dyschoriste angusta,"Rockland twinflower, Pineland snakeherb",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dyscangu,Human Observation,2004-03-30,BICY,388,NA,26.1428,-80.8861,26.1411,-80.8845,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,145,388,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-03-05,BICY,569,NA,26.0167,-81.1132,26.0146,-81.1121,WGS84,314,Cell #AB28,"17N 2877539 E, 488676 N",UTM,WGS84,1,160,569,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-03-25,BICY,745,NA,26.21,-81.0892,26.2079,-81.0878,WGS84,314,Cell #AE07,"17N 2898939 E, 491088 N",UTM,WGS84,1,140,745,species,A,A,A +Scleria baldwinii,Baldwin's nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclebald,Human Observation,2002-07-17,BICY,163,NA,26.0432,-81.0379,26.0411,-81.0375,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,180,163,species,A,A,A +Ficus aurea,"Strangler fig, Golden fig",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ficuaure,Human Observation,2003-05-27,BICY,451,NA,25.749,-80.8746,25.7489,-80.8775,WGS84,314,Cell #AZ58,"17N 2847898 E, 512578 N",UTM,WGS84,1,270,451,species,A,A,A +Aletris lutea,Yellow colicroot,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,aletlute,Human Observation,2002-09-19,BICY,220,NA,26.1911,-80.8875,26.1922,-80.8853,WGS84,314,Cell #AY09,"17N 2896849 E, 511241 N",UTM,WGS84,1,60,220,species,A,A,A +Scleria georgiana,Slenderfruit nutrush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sclegeor,Human Observation,2003-03-06,BICY,573,NA,25.9962,-81.129,25.9956,-81.1266,WGS84,314,Cell #AA30,"17N 2875269 E, 487086 N",UTM,WGS84,1,110,573,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-06-19,BICY,740,NA,25.8843,-80.8461,25.8837,-80.8484,WGS84,314,Cell #BC43,"17N 2862884 E, 515418 N",UTM,WGS84,1,255,740,species,A,A,A +Boehmeria cylindrica,"Button-hemp, False nettle, Bog hemp",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,boehcyli,Human Observation,2003-02-04,BICY,469,NA,25.8418,-81.0023,25.8436,-81.0038,WGS84,314,Cell #AM47,"17N 2858162 E, 499774 N",UTM,WGS84,1,330,469,species,A,A,A +Dichanthelium dichotomum,Cypress witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dichdich,Human Observation,2004-05-06,BICY,341,NA,26.2422,-81.0507,26.24,-81.0504,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,175,341,species,A,A,A +Psychotria nervosa,Shiny-leaved wild-coffee,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psycnerv,Human Observation,2003-03-13,BICY,739,NA,25.7616,-80.9307,25.7635,-80.9312,WGS84,314,Cell #AT56,"17N 2849280 E, 506953 N",UTM,WGS84,1,350,739,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2004-05-13,BICY,428,NA,25.8978,-81.2753,25.8964,-81.2736,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,130,428,species,A,A,A +Sabatia bartramii,Bartram's rosegentian,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sababart,Human Observation,2004-04-07,BICY,438,NA,26.2498,-81.2265,26.2476,-81.2262,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,180,438,species,A,A,A +Nymphoides aquatica,Big floatingheart,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nympaqua,Human Observation,2003-07-02,BICY,707,NA,25.6812,-80.9505,25.6827,-80.9524,WGS84,314,Cell #AR65,"17N 2840382 E, 504964 N",UTM,WGS84,1,315,707,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2002-05-29,BICY,204,NA,25.9464,-81.2971,25.9444,-81.2968,WGS84,314,Cell #J36,"17N 2869783 E, 470257 N",UTM,WGS84,1,180,204,species,A,A,A +Rhynchospora colorata,Starrush whitetop,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyncolo,Human Observation,2004-03-26,BICY,414,NA,26.2242,-81.0649,26.2242,-81.0674,WGS84,314,Cell #AG05,"17N 2900516 E, 493515 N",UTM,WGS84,1,270,414,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2004-06-02,BICY,356,NA,25.9555,-81.0064,25.9541,-81.0043,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,135,356,species,A,A,A +Eupatorium mohrii,Mohr's thoroughwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamohr,Human Observation,2004-03-24,BICY,411,NA,26.22,-81.0859,26.2213,-81.0839,WGS84,314,Cell #AE05,"17N 2900049 E, 491423 N",UTM,WGS84,1,30,411,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2003-03-07,BICY,558,NA,25.7369,-80.9716,25.7351,-80.973,WGS84,314,Cell #AP59,"17N 2846549 E, 502853 N",UTM,WGS84,1,220,558,species,A,A,A +Fraxinus caroliniana,"Water ash, Carolina ash, Pop ash",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fraxcaro,Human Observation,2004-06-03,BICY,353,NA,26.0243,-81.0653,26.0246,-81.0678,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,295,353,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2003-06-04,BICY,521,NA,25.8672,-81.353,25.8687,-81.3513,WGS84,314,Cell #D44 (originally labeled E45),"17N 2861021 E, 464635 N",UTM,WGS84,1,60,521,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2004-03-17,BICY,377,NA,26.1818,-81.343,26.1802,-81.3413,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,150,377,species,A,A,A +Rhynchospora colorata,Starrush whitetop,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyncolo,Human Observation,2003-03-26,BICY,693,NA,25.6592,-81.0263,25.6585,-81.024,WGS84,314,Cell #AK68,"17N 2837939 E, 497357 N",UTM,WGS84,1,110,693,species,A,A,A +Aster subulatus,Annual saltmarsh aster,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,astesubu,Human Observation,2002-11-14,BICY,284,NA,26.0767,-81.272,26.0774,-81.2743,WGS84,314,Cell #L21,"17N 2884209 E, 472799 N",UTM,WGS84,1,290,284,species,A,A,A +Juncus megacephalus,Bighead rush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,juncmega,Human Observation,2003-03-25,BICY,681,NA,25.9646,-81.2476,25.9632,-81.2495,WGS84,314,Cell #O34,"17N 2871789 E, 475210 N",UTM,WGS84,1,235,681,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2003-06-03,BICY,515,NA,25.717,-81.0562,25.7186,-81.0581,WGS84,314,Cell #AH61,"17N 2844349 E, 494364 N",UTM,WGS84,1,320,515,species,A,A,A +Utricularia subulata,Zigzag bladderwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,utrisubu,Human Observation,2003-05-14,BICY,640,NA,26.1761,-81.1817,26.1789,-81.1821,WGS84,314,Cell #U10,"17N 2895202 E, 481846 N",UTM,WGS84,1,0,640,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2002-08-29,BICY,249,NA,25.7858,-81.0958,25.7852,-81.0936,WGS84,314,Cell #AD54,"17N 2851968 E, 490392 N",UTM,WGS84,1,110,249,species,A,A,A +Tillandsia usneoides,Spanish-moss,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillusne,Human Observation,2003-06-19,BICY,740,NA,25.8843,-80.8461,25.8837,-80.8484,WGS84,314,Cell #BC43,"17N 2862884 E, 515418 N",UTM,WGS84,1,255,740,species,A,A,A +Eupatorium mohrii,Mohr's thoroughwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamohr,Human Observation,2004-05-13,BICY,430,NA,25.9072,-81.2737,25.9054,-81.2743,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,220,430,species,A,A,A +Phlebodium aureum,Golden polypody,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,phleaure,Human Observation,2003-09-16,BICY,719,NA,26.1624,-81.0283,26.1609,-81.026,WGS84,314,Cell #AK12,"17N 2893665 E, 497173 N",UTM,WGS84,1,130,719,species,A,A,A +Sagittaria lancifolia,Bulltongue arrowhead,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sagilanc,Human Observation,2003-07-17,BICY,714,NA,25.8076,-81.214,25.8094,-81.2151,WGS84,314,Cell #R61,"17N 2854390 E, 478553 N",UTM,WGS84,1,340,714,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2002-07-31,BICY,253,NA,26.0454,-81.3423,26.0451,-81.3397,WGS84,314,Cell #E25,"17N 2880757 E, 465755 N",UTM,WGS84,1,110,253,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-04-29,BICY,606,NA,25.8642,-81.2501,25.8627,-81.2519,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,230,606,species,A,A,A +NA,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cf. spermacoce floridana,Human Observation,2003-03-13,BICY,633,Spermococe cf floridana,26.0488,-81.0668,26.0487,-81.0641,WGS84,314,Cell #AG24,"17N 2881089 E, 493320 N",UTM,WGS84,1,100,633,NA,A,R,A +Paspalum conjugatum,"Sour paspalum, Hilograss",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspconj,Human Observation,2004-03-17,BICY,378,NA,26.186,-81.343,26.1854,-81.3406,WGS84,314,Cell #E09,"17N 2896326 E, 465728 N",UTM,WGS84,1,110,378,species,A,A,A +Tillandsia balbisiana,"Reflexed wild-pine, Northern needleleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillbalb,Human Observation,2004-06-22,BICY,311,NA,26.1685,-81.2779,26.1706,-81.2771,WGS84,314,Cell #L11,"17N 2894377 E, 472231 N",UTM,WGS84,1,25,311,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2003-02-28,BICY,578,NA,25.7753,-80.9975,25.775,-80.9999,WGS84,314,Cell #AN55,"17N 2850797 E, 500253 N",UTM,WGS84,1,265,578,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2003-02-27,BICY,588,NA,26.0397,-81.1252,26.0401,-81.1231,WGS84,314,Cell #AA25,"17N 2880083 E, 487479 N",UTM,WGS84,1,85,588,species,A,A,A +Vitis rotundifolia,"Muscadine, Muscadine grape",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vitirotu,Human Observation,2002-05-21,BICY,216,NA,26.2511,-80.9297,26.2535,-80.9293,WGS84,314,Cell #AU02,"17N 2903494 E, 507020 N",UTM,WGS84,1,5,216,species,A,A,A +Boehmeria cylindrica,"Button-hemp, False nettle, Bog hemp",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,boehcyli,Human Observation,2003-05-13,BICY,611,NA,26.1457,-81.2422,26.1447,-81.2445,WGS84,314,Cell #O14,"17N 2891842 E, 475791 N",UTM,WGS84,1,265,611,species,A,A,A +Fuirena breviseta,Saltmarsh umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirbrev,Human Observation,2003-03-05,BICY,568,NA,26.0167,-81.1132,26.0165,-81.1107,WGS84,314,Cell #AB28,"17N 2877539 E, 488676 N",UTM,WGS84,1,95,568,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2003-05-14,BICY,641,NA,26.1761,-81.1817,26.1759,-81.1846,WGS84,314,Cell #U10,"17N 2895202 E, 481846 N",UTM,WGS84,1,270,641,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-02-11,BICY,490,NA,26.0752,-81.293,26.0774,-81.2932,WGS84,314,Cell #J21,"17N 2884040 E, 470692 N",UTM,WGS84,1,5,490,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2004-04-14,BICY,416,NA,26.2163,-81.0953,26.2174,-81.0932,WGS84,314,Cell #AJ06,"17N 2899645 E, 490479 N",UTM,WGS84,1,70,416,species,A,A,A +Andropogon virginicus var. glaucus,Chalky bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrvirgglau,Human Observation,2003-04-10,BICY,666,NA,26.1004,-81.1641,26.0983,-81.1641,WGS84,314,Cell #W19,"17N 2886815 E, 483592 N",UTM,WGS84,1,190,666,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-06-06,BICY,509,NA,26.1338,-80.9446,26.1337,-80.9422,WGS84,314,Cell #AS15,"17N 2890502 E, 505535 N",UTM,WGS84,1,100,509,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2003-02-19,BICY,596,NA,26.0084,-81.2316,26.0063,-81.2316,WGS84,314,Cell #P29,"17N 2876637 E, 476826 N",UTM,WGS84,1,190,596,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-05-31,BICY,202,NA,26.2044,-81.066,26.2022,-81.0659,WGS84,314,Cell #AG07,"17N 2898326 E, 493407 N",UTM,WGS84,1,180,202,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-07-17,BICY,714,NA,25.8076,-81.214,25.8094,-81.2151,WGS84,314,Cell #R61,"17N 2854390 E, 478553 N",UTM,WGS84,1,340,714,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2003-02-27,BICY,575,NA,25.9273,-80.9622,25.9258,-80.9605,WGS84,314,Cell #AQ38,"17N 2867634 E, 503783 N",UTM,WGS84,1,140,575,species,A,A,A +Eremochloa ophiuroides,Centipede grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eremophi,Human Observation,2004-05-20,BICY,393,NA,26.2529,-80.8936,26.2541,-80.8915,WGS84,314,Cell #AX02,"17N 2903700 E, 510627 N",UTM,WGS84,1,60,393,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2003-05-27,BICY,451,NA,25.749,-80.8746,25.7489,-80.8775,WGS84,314,Cell #AZ58,"17N 2847898 E, 512578 N",UTM,WGS84,1,270,451,species,A,A,A +Ludwigia alata,Winged primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwalat,Human Observation,2003-02-05,BICY,465,NA,26.1795,-80.9152,26.1798,-80.9177,WGS84,314,Cell #AV10,"17N 2895561 E, 508470 N",UTM,WGS84,1,280,465,species,A,A,A +Lobelia glandulosa,Glade lobelia,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,lobeglan,Human Observation,2002-11-05,BICY,280,NA,25.8708,-81.2282,25.8686,-81.228,WGS84,314,Cell #Q44,"17N 2861398 E, 477142 N",UTM,WGS84,1,180,280,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-03-28,BICY,626,NA,25.9163,-81.0604,25.9183,-81.0611,WGS84,314,Cell #AG39,"17N 2866413 E, 493955 N",UTM,WGS84,1,350,626,species,A,A,A +Vitis cinerea var. floridana,Florida grape,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,viticineflor,Human Observation,2002-05-31,BICY,202,NA,26.2044,-81.066,26.2022,-81.0659,WGS84,314,Cell #AG07,"17N 2898326 E, 493407 N",UTM,WGS84,1,180,202,species,A,A,A +Senna ligustrina,"Privet senna, Privet wild sensitive plant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sennligu,Human Observation,2003-05-23,BICY,531,Senna species,25.8048,-80.9224,25.8046,-80.9249,WGS84,314,Cell #AU51,"17N 2854064 E, 507777 N",UTM,WGS84,1,270,531,species,A,A,A +Parthenocissus quinquefolia,"Virginia-creeper, Woodbine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,partquin,Human Observation,2003-06-13,BICY,504,NA,26.2456,-81.1057,26.2438,-81.1047,WGS84,314,Cell #AC03,"17N 2902890 E, 489446 N",UTM,WGS84,1,160,504,species,A,A,A +Rhynchospora odorata,Fragrant beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynodor,Human Observation,2004-04-14,BICY,420,NA,26.2176,-81.0845,26.2191,-81.0828,WGS84,314,Cell #AE06,"17N 2899785 E, 491558 N",UTM,WGS84,1,50,420,species,A,A,A +Canna flaccida,"Golden canna, Bandana-of-the-everglades",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cannflac,Human Observation,2003-05-02,BICY,511,NA,26.0974,-81.32,26.098,-81.3178,WGS84,314,Cell #H19,"17N 2886505 E, 468000 N",UTM,WGS84,1,75,511,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2003-03-06,BICY,554,NA,26.2322,-81.3052,26.2335,-81.3074,WGS84,314,Cell #I04,"17N 2901439 E, 469519 N",UTM,WGS84,1,310,554,species,A,A,A +Utricularia purpurea,Eastern purple bladderwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,utripurp,Human Observation,2003-03-12,BICY,631,NA,26.0746,-81.0252,26.0725,-81.0244,WGS84,314,Cell #AK22,"17N 2883951 E, 497476 N",UTM,WGS84,1,180,631,species,A,A,A +Cyperus haspan,Haspan flatsedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cypehasp,Human Observation,2003-04-24,BICY,613,NA,25.7194,-81.0846,25.7216,-81.0853,WGS84,314,Cell #AE61,"17N 2844609 E, 491518 N",UTM,WGS84,1,345,613,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2003-04-09,BICY,683,NA,26.0881,-81.1551,26.0859,-81.1554,WGS84,314,Cell #X20,"17N 2885455 E, 484489 N",UTM,WGS84,1,190,683,species,A,A,A +Eragrostis elliottii,Elliott's love grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eragelli,Human Observation,2002-09-18,BICY,233,NA,25.7252,-81.0306,25.7256,-81.033,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,290,233,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-01-04,BICY,459,NA,26.2036,-80.9318,26.203,-80.934,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,250,459,species,A,A,A +Sagittaria graminea var. chapmanii,Chapman's arrowhead,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sagigramchap,Human Observation,2002-08-23,BICY,246,NA,25.8536,-81.2248,25.8555,-81.2262,WGS84,314,Cell #Q46,"17N 2859495 E, 477474 N",UTM,WGS84,1,330,246,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2003-04-16,BICY,661,NA,26.2547,-81.0622,26.255,-81.0642,WGS84,314,Cell #AG02,"17N 2903897 E, 493787 N",UTM,WGS84,1,280,661,species,A,A,A +Mikania scandens,"Climbing hempweed, Climbing hempvine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,mikascan,Human Observation,2003-03-19,BICY,629,NA,25.9812,-81.1982,25.9791,-81.1982,WGS84,314,Cell #T32,"17N 2873621 E, 480164 N",UTM,WGS84,1,190,629,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-05-08,BICY,135,NA,25.8891,-81.067,25.8905,-81.065,WGS84,314,"Cell #AG42, endpoint estimated using arcmap","17N 2863405 E, 493293 N",UTM,WGS84,1,45,135,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2004-03-31,BICY,319,NA,26.1349,-81.057,26.1335,-81.055,WGS84,314,Cell #AH15,"17N 2890624 E, 494305 N",UTM,WGS84,1,130,319,species,A,A,A +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2002-06-04,BICY,268,NA,25.9992,-81.1001,25.9993,-81.1023,WGS84,314,Cell #AC30,"17N 2875600 E, 489986 N",UTM,WGS84,1,225,268,species,A,A,A +Smilax auriculata,Earleaf greenbrier,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smilauri,Human Observation,2003-02-20,BICY,495,NA,25.9569,-80.947,25.9559,-80.9449,WGS84,314,Cell #AS35,"17N 2870917 E, 505304 N",UTM,WGS84,1,125,495,species,A,A,A +Solidago stricta,"Narrow-leaved goldenrod, Wand goldenrod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,solistri,Human Observation,2003-05-02,BICY,511,NA,26.0974,-81.32,26.098,-81.3178,WGS84,314,Cell #H19,"17N 2886505 E, 468000 N",UTM,WGS84,1,75,511,species,A,A,A +Gratiola ramosa,Branched hedgehyssop,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,gratramo,Human Observation,2003-03-25,BICY,690,NA,25.935,-80.9886,25.9338,-80.9864,WGS84,314,Cell #AO37,"17N 2868490 E, 501141 N",UTM,WGS84,1,125,690,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-06-06,BICY,509,NA,26.1338,-80.9446,26.1337,-80.9422,WGS84,314,Cell #AS15,"17N 2890502 E, 505535 N",UTM,WGS84,1,100,509,species,A,A,A +Panicum hemitomon,Maidencane,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panihemi,Human Observation,2003-05-02,BICY,655,NA,26.2526,-81.1916,26.252,-81.1939,WGS84,314,Cell #T02,"17N 2903667 E, 480866 N",UTM,WGS84,1,260,655,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2004-03-11,BICY,398,NA,25.7817,-80.9812,25.7817,-80.9837,WGS84,314,Cell #AO54,"17N 2851513 E, 501882 N",UTM,WGS84,1,270,398,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-05-09,BICY,648,NA,25.8875,-81.049,25.8894,-81.0484,WGS84,314,Cell #AI42,"17N 2863229 E, 495090 N",UTM,WGS84,1,30,648,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-06-03,BICY,516,NA,25.7102,-81.0764,25.7104,-81.0789,WGS84,314,Cell #AF62,"17N 2843594 E, 492335 N",UTM,WGS84,1,280,516,species,A,A,A +Thelypteris palustris var. pubescens,Marsh fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelpalupube,Human Observation,2004-06-22,BICY,313,NA,26.1627,-81.2799,26.1606,-81.2794,WGS84,314,Cell #L12,"17N 2893733 E, 472025 N",UTM,WGS84,1,180,313,species,A,A,A +Sagittaria lancifolia,Bulltongue arrowhead,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sagilanc,Human Observation,2003-07-09,BICY,721,NA,26.2346,-81.285,26.2353,-81.2871,WGS84,314,Cell #K04,"17N 2901693 E, 471533 N",UTM,WGS84,1,290,721,species,A,A,A +Spartina bakeri,Sand cordgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sparbake,Human Observation,2003-03-06,BICY,573,NA,25.9962,-81.129,25.9956,-81.1266,WGS84,314,Cell #AA30,"17N 2875269 E, 487086 N",UTM,WGS84,1,110,573,species,A,A,A +Panicum rigidulum,Redtop panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirigi,Human Observation,2002-08-29,BICY,249,NA,25.7858,-81.0958,25.7852,-81.0936,WGS84,314,Cell #AD54,"17N 2851968 E, 490392 N",UTM,WGS84,1,110,249,species,A,A,A +Chiococca parvifolia,Pineland snowberry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chioparv,Human Observation,2003-04-16,BICY,660,NA,26.2547,-81.0622,26.2528,-81.0628,WGS84,314,Cell #AG02,"17N 2903897 E, 493787 N",UTM,WGS84,1,200,660,species,A,A,A +Rhynchospora divergens,Spreading beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyndive,Human Observation,2003-04-10,BICY,667,NA,26.1004,-81.1641,26.0986,-81.1655,WGS84,314,Cell #W19,"17N 2886815 E, 483592 N",UTM,WGS84,1,220,667,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-07-11,BICY,155,NA,26.1057,-81.284,26.1035,-81.2833,WGS84,314,Cell #K18,"17N 2887417 E, 471604 N",UTM,WGS84,1,170,155,species,A,A,A +Melochia spicata,Bretonica peluda,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,melospic,Human Observation,2004-04-07,BICY,432,NA,26.25,-81.2548,26.2478,-81.2547,WGS84,314,Cell #N02,"17N 2903396 E, 474557 N",UTM,WGS84,1,180,432,species,A,A,A +Solidago stricta,"Narrow-leaved goldenrod, Wand goldenrod",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,solistri,Human Observation,2003-01-04,BICY,459,NA,26.2036,-80.9318,26.203,-80.934,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,250,459,species,A,A,A +Typha domingensis,Southern cat-tail,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,typhdomi,Human Observation,2002-05-20,BICY,190,NA,25.7828,-80.8764,25.7807,-80.8773,WGS84,314,"Cell #AZ54, inside Loop Rd.","17N 2851635 E, 512389 N",UTM,WGS84,1,205,190,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-06-19,BICY,741,NA,25.8843,-80.8461,25.8826,-80.8465,WGS84,314,Cell #BC43,"17N 2862884 E, 515418 N",UTM,WGS84,1,180,741,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2002-08-23,BICY,237,NA,25.8448,-81.2201,25.8466,-81.2215,WGS84,314,Cell #Q47,"17N 2858519 E, 477943 N",UTM,WGS84,1,330,237,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2002-08-22,BICY,242,NA,25.9059,-81.2415,25.9053,-81.2441,WGS84,314,Cell #O40,"17N 2865287 E, 475811 N",UTM,WGS84,1,260,242,species,A,A,A +Toxicodendron radicans,Eastern poison-ivy,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,toxiradi,Human Observation,2004-06-10,BICY,315,NA,26.1551,-81.1871,26.1539,-81.1851,WGS84,314,Cell #U13,"17N 2892878 E, 481301 N",UTM,WGS84,1,125,315,species,A,A,A +Juncus megacephalus,Bighead rush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,juncmega,Human Observation,2003-04-08,BICY,674,NA,26.0673,-81.1525,26.0695,-81.1521,WGS84,314,"Cell #X22, endpoint corrected using arcmap","17N 2883144 E, 484751 N",UTM,WGS84,1,15,674,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2003-05-24,BICY,533,NA,25.8115,-81.1422,25.8129,-81.1407,WGS84,314,Cell #Y51,"17N 2854812 E, 485751 N",UTM,WGS84,1,40,533,species,A,A,A +Quercus laurifolia,"Laurel oak, Diamond oak",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,querlaur,Human Observation,2002-05-22,BICY,219,NA,25.7737,-81.0393,25.7735,-81.0388,WGS84,314,Cell #AJ55 (North of Loop Road),"17N 2850623 E, 496063 N",UTM,WGS84,1,155,219,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2003-02-07,BICY,493,NA,25.8691,-81.0272,25.8679,-81.0294,WGS84,314,Cell #AK44,"17N 2861184 E, 497273 N",UTM,WGS84,1,250,493,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-03-28,BICY,684,NA,25.9193,-81.0491,25.9181,-81.047,WGS84,314,Cell #AI39,"17N 2866752 E, 495080 N",UTM,WGS84,1,130,684,species,A,A,A +Iris hexagona,"Dixie iris, Prairie iris",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,irishexa,Human Observation,2004-05-04,BICY,342,NA,25.863,-81.1021,25.8628,-81.1046,WGS84,314,Cell #AC45,"17N 2860512 E, 489770 N",UTM,WGS84,1,270,342,species,A,A,A +Ilex cassine,"Dahoon holly, Dahoon",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ilexcass,Human Observation,2003-02-06,BICY,455,NA,25.9529,-81.3444,25.9541,-81.3422,WGS84,314,Cell #E35,"17N 2870515 E, 465524 N",UTM,WGS84,1,65,455,species,A,A,A +Persea palustris,Swamp bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,perspalu,Human Observation,2002-09-17,BICY,223,NA,25.6988,-80.9736,25.7,-80.9758,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,310,223,species,A,A,A +Samolus ebracteatus,"Water pimpernel, Limewater brookweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,samoebra,Human Observation,2003-03-04,BICY,562,NA,26.0403,-81.0942,26.042,-81.0956,WGS84,314,Cell #AD25,"17N 2880145 E, 490578 N",UTM,WGS84,1,320,562,species,A,A,A +Melaleuca quinquenervia,Punktree,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,melaquin,Human Observation,2002-06-17,BICY,145,NA,25.8329,-81.1112,25.8339,-81.1134,WGS84,314,"Cell #AB48, W of Monroe Station S of Tamiami Trai","17N 2857179 E, 488852 N",UTM,WGS84,1,305,145,species,A,A,A +Elionurus tripsacoides,Pan-American balsamscale,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eliotrip,Human Observation,2003-05-02,BICY,512,NA,26.1068,-81.3197,26.1068,-81.3174,WGS84,314,Cell #H18,"17N 2887550 E, 468039 N",UTM,WGS84,1,100,512,species,A,A,A +Cephalanthus occidentalis,Common buttonbush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cephocci,Human Observation,2004-05-07,BICY,368,NA,25.7236,-80.9208,25.7257,-80.9206,WGS84,314,Cell #AU60,"17N 2845078 E, 507948 N",UTM,WGS84,1,0,368,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-05-31,BICY,203,NA,26.2044,-81.066,26.2044,-81.066,WGS84,314,Cell #AG07 (was mislabeled as AD31),"17N 2898326 E, 493407 N",UTM,WGS84,1,50,203,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-05-29,BICY,538,NA,25.7563,-80.9028,25.7582,-80.9038,WGS84,314,Cell #AW57,"17N 2848699 E, 509752 N",UTM,WGS84,1,350,538,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2004-03-17,BICY,377,NA,26.1818,-81.343,26.1802,-81.3413,WGS84,314,Cell #E10,"17N 2895858 E, 465728 N",UTM,WGS84,1,150,377,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2002-05-29,BICY,205,NA,25.9464,-81.2971,25.9466,-81.2971,WGS84,314,Cell #J36,"17N 2869783 E, 470257 N",UTM,WGS84,1,270,205,species,A,A,A +Cephalanthus occidentalis,Common buttonbush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cephocci,Human Observation,2003-06-18,BICY,696,NA,26.047,-81.1762,26.0461,-81.1739,WGS84,314,Cell #V25,"17N 2880903 E, 482375 N",UTM,WGS84,1,125,696,species,A,A,A +Hedyotis uniflora,Clustered mille graine,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hedyunif,Human Observation,2004-05-05,BICY,328,NA,26.2408,-81.0341,26.243,-81.0343,WGS84,314,Cell #AJ03,"17N 2902357 E, 496596 N",UTM,WGS84,1,0,328,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-04-08,BICY,675,NA,26.0673,-81.1525,26.0673,-81.155,WGS84,314,Cell #X22,"17N 2883144 E, 484751 N",UTM,WGS84,1,270,675,species,A,A,A +Rhynchospora inundata,Narrowfruit horned beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyninun,Human Observation,2003-03-04,BICY,563,NA,26.0403,-81.0942,26.0419,-81.0923,WGS84,314,Cell #AD25,"17N 2880145 E, 490578 N",UTM,WGS84,1,50,563,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2003-05-09,BICY,650,NA,25.8993,-81.0752,25.9015,-81.075,WGS84,314,Cell #AF41,"17N 2864531 E, 492472 N",UTM,WGS84,1,10,650,species,A,A,A +Aster bracei,Brace's aster,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,astebrac,Human Observation,2003-02-28,BICY,578,NA,25.7753,-80.9975,25.775,-80.9999,WGS84,314,Cell #AN55,"17N 2850797 E, 500253 N",UTM,WGS84,1,265,578,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2003-02-19,BICY,597,NA,26.0084,-81.2316,26.0087,-81.2339,WGS84,314,Cell #P29,"17N 2876637 E, 476826 N",UTM,WGS84,1,280,597,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2003-04-17,BICY,665,NA,26.2321,-81.0449,26.2297,-81.0447,WGS84,314,Cell #AI04,"17N 2901387 E, 495513 N",UTM,WGS84,1,180,665,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2003-06-12,BICY,503,NA,25.8961,-81.1523,25.8979,-81.1507,WGS84,314,Cell #X41,"17N 2864187 E, 484747 N",UTM,WGS84,1,50,503,species,A,A,A +Sarcostemma clausum,"Whitevine, White twinevine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sarcclau,Human Observation,2003-06-19,BICY,741,NA,25.8843,-80.8461,25.8826,-80.8465,WGS84,314,Cell #BC43,"17N 2862884 E, 515418 N",UTM,WGS84,1,180,741,species,A,A,A +Smilax laurifolia,"Catbrier, Laurel greenbrier, Bamboo vine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smillaur,Human Observation,2003-05-29,BICY,538,NA,25.7563,-80.9028,25.7582,-80.9038,WGS84,314,Cell #AW57,"17N 2848699 E, 509752 N",UTM,WGS84,1,350,538,species,A,A,A +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2003-06-18,BICY,699,NA,26.0257,-81.2201,26.0263,-81.2225,WGS84,314,Cell #Q27,"17N 2878553 E, 477980 N",UTM,WGS84,1,290,699,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2002-08-22,BICY,244,NA,25.9154,-81.2418,25.9144,-81.2439,WGS84,314,"Cell #O39, endpoint corrected using arcmap","17N 2866336 E, 475780 N",UTM,WGS84,1,245,244,species,A,A,A +Cynanchum blodgettii,Blodgett's swallowwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cynablod,Human Observation,2004-06-03,BICY,352,NA,26.0243,-81.0653,26.0258,-81.067,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,335,352,species,A,A,A +Andropogon virginicus var. glaucus,Chalky bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrvirgglau,Human Observation,2004-03-30,BICY,391,NA,26.1527,-80.8913,26.1549,-80.891,WGS84,314,Cell #AX13,"17N 2892602 E, 510865 N",UTM,WGS84,1,10,391,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2004-03-30,BICY,389,NA,26.1428,-80.8861,26.142,-80.8883,WGS84,314,Cell #AY14,"17N 2891503 E, 511389 N",UTM,WGS84,1,250,389,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2002-05-22,BICY,213,NA,25.7595,-81.0428,25.7604,-81.0449,WGS84,314,Cell #AI56,"17N 2849056 E, 495705 N",UTM,WGS84,1,280,213,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2002-09-17,BICY,222,NA,25.6988,-80.9736,25.6966,-80.974,WGS84,314,Cell #AP63,"17N 2842329 E, 502644 N",UTM,WGS84,1,200,222,species,A,A,A +Sisyrinchium angustifolium,Narroleaf blueeyed-grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sisyangu,Human Observation,2003-03-04,BICY,562,NA,26.0403,-81.0942,26.042,-81.0956,WGS84,314,Cell #AD25,"17N 2880145 E, 490578 N",UTM,WGS84,1,320,562,species,A,A,A +Dichanthelium erectifolium,Erectleaf witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dicherec,Human Observation,2003-03-11,BICY,546,NA,26.1881,-81.0574,26.1859,-81.0576,WGS84,314,Cell #AH09,"17N 2896517 E, 494269 N",UTM,WGS84,1,190,546,species,A,A,A +Utricularia foliosa,Leafy bladderwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,utrifoli,Human Observation,2004-05-13,BICY,431,NA,25.9072,-81.2737,25.9078,-81.2714,WGS84,314,Cell #L40,"17N 2865437 E, 472583 N",UTM,WGS84,1,75,431,species,A,A,A +Pontederia cordata,Pickerelweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pontcord,Human Observation,2003-05-22,BICY,523,NA,25.9615,-80.8461,25.963,-80.8442,WGS84,314,Cell #BC34,"17N 2871431 E, 515404 N",UTM,WGS84,1,50,523,species,A,A,A +Thelypteris kunthii,Southern shield fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelkunt,Human Observation,2003-03-13,BICY,634,NA,26.065,-81.0271,26.0629,-81.0261,WGS84,314,Cell #AK23,"17N 2882885 E, 497287 N",UTM,WGS84,1,160,634,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2003-03-18,BICY,614,NA,25.8982,-81.1038,25.8962,-81.104,WGS84,314,Cell #AC41,"17N 2864411 E, 489601 N",UTM,WGS84,1,190,614,species,A,A,A +Melothria pendula,Creeping-cucumber,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,melopend,Human Observation,2004-05-05,BICY,330,NA,26.2506,-81.0295,26.2484,-81.0298,WGS84,314,Cell #AK02,"17N 2903435 E, 497051 N",UTM,WGS84,1,185,330,species,A,A,A +Eragrostis elliottii,Elliott's love grass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eragelli,Human Observation,2003-02-27,BICY,577,NA,25.9345,-80.9503,25.9324,-80.9514,WGS84,314,Cell #AR37,"17N 2868429 E, 504977 N",UTM,WGS84,1,210,577,species,A,A,A +Vaccinium myrsinites,Shiny blueberry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vaccmyrs,Human Observation,2004-03-24,BICY,411,NA,26.22,-81.0859,26.2213,-81.0839,WGS84,314,Cell #AE05,"17N 2900049 E, 491423 N",UTM,WGS84,1,30,411,species,A,A,A +Cladium jamaicense,"Saw-grass, Jamaica swamp sawgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cladjama,Human Observation,2002-09-18,BICY,224,NA,25.7079,-81.0433,25.7064,-81.0452,WGS84,314,Cell #AI62,"17N 2843334 E, 495652 N",UTM,WGS84,1,235,224,species,A,A,A +Piriqueta caroliniana,Pitted stripeseed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,piricaro,Human Observation,2003-02-20,BICY,599,NA,25.9997,-81.1907,25.9983,-81.1925,WGS84,314,Cell #T30,"17N 2875659 E, 480919 N",UTM,WGS84,1,240,599,species,A,A,A +Diodia virginiana,"Buttonweed, Virginia buttonweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,diodvirg,Human Observation,2003-05-09,BICY,651,NA,25.8993,-81.0752,25.8992,-81.0729,WGS84,314,Cell #AF41,"17N 2864531 E, 492472 N",UTM,WGS84,1,85,651,species,A,A,A +Coreopsis leavenworthii,Leavenworth's tickseed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,coreleav,Human Observation,2003-03-13,BICY,633,NA,26.0488,-81.0668,26.0487,-81.0641,WGS84,314,Cell #AG24,"17N 2881089 E, 493320 N",UTM,WGS84,1,100,633,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-03-11,BICY,398,NA,25.7817,-80.9812,25.7817,-80.9837,WGS84,314,Cell #AO54,"17N 2851513 E, 501882 N",UTM,WGS84,1,270,398,species,A,A,A +Vitis cinerea var. floridana,Florida grape,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,viticineflor,Human Observation,2002-05-21,BICY,217,NA,26.2511,-80.9297,26.25,-80.9279,WGS84,314,Cell #AU02,"17N 2903494 E, 507020 N",UTM,WGS84,1,130,217,species,A,A,A +Hyptis alata,"Musky mint, Clustered bushmint",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hyptalat,Human Observation,2003-06-12,BICY,502,NA,25.8961,-81.1523,25.8982,-81.1514,WGS84,314,"Cell #X41, endpoint estimated using arcmap","17N 2864187 E, 484747 N",UTM,WGS84,1,15,502,species,A,A,A +Cephalanthus occidentalis,Common buttonbush,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cephocci,Human Observation,2003-03-12,BICY,543,NA,26.0617,-81.0309,26.0631,-81.0327,WGS84,314,Cell #AJ23,"17N 2882518 E, 496908 N",UTM,WGS84,1,315,543,species,A,A,A +Blechnum serrulatum,"Swamp fern, Toothed midsorus fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,blecserr,Human Observation,2003-04-10,BICY,669,NA,26.0691,-81.1605,26.0687,-81.1629,WGS84,314,Cell #W22,"17N 2883351 E, 483950 N",UTM,WGS84,1,265,669,species,A,A,A +Dichanthelium commutatum,Variable witchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,dichcomm,Human Observation,2002-08-01,BICY,254,NA,26.1693,-81.2554,26.1694,-81.2578,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,280,254,species,A,A,A +Crinum americanum,"Swamp-lily, Seven-sisters, String-lily",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,crinamer,Human Observation,2004-03-24,BICY,425,NA,25.9726,-81.3357,25.9744,-81.3339,WGS84,314,Cell #F33,"17N 2872694 E, 466400 N",UTM,WGS84,1,45,425,species,A,A,A +Saururus cernuus,Lizard's tail,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,saurcern,Human Observation,2002-05-09,BICY,182,NA,25.9254,-80.8441,25.927,-80.8422,WGS84,314,Cell #BC38,"17N 2867427 E, 515616 N",UTM,WGS84,1,50,182,species,A,A,A +Vitis rotundifolia,"Muscadine, Muscadine grape",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vitirotu,Human Observation,2002-10-29,BICY,279,NA,26.1134,-81.2906,26.1113,-81.2902,WGS84,314,Cell #J17,"17N 2888274 E, 470944 N",UTM,WGS84,1,175,279,species,A,A,A +Nephrolepis exaltata,Wild Boston fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephexal,Human Observation,2004-06-16,BICY,335,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,species,A,A,A +Encyclia tampensis,Florida butterfly orchid,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,encytamp,Human Observation,2004-03-24,BICY,371,NA,25.9769,-81.3355,25.9771,-81.333,WGS84,314,Cell #F32,"17N 2873174 E, 466418 N",UTM,WGS84,1,90,371,species,A,A,A +Vitis cinerea var. floridana,Florida grape,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,viticineflor,Human Observation,2003-03-13,BICY,739,NA,25.7616,-80.9307,25.7635,-80.9312,WGS84,314,Cell #AT56,"17N 2849280 E, 506953 N",UTM,WGS84,1,350,739,species,A,A,A +Elionurus tripsacoides,Pan-American balsamscale,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eliotrip,Human Observation,2003-03-25,BICY,618,NA,25.944,-80.9871,25.946,-80.9862,WGS84,314,Cell #AO36,"17N 2869481 E, 501294 N",UTM,WGS84,1,20,618,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2003-05-22,BICY,536,NA,25.7995,-81.1676,25.8013,-81.1668,WGS84,314,Cell #W52,"17N 2853490 E, 483199 N",UTM,WGS84,1,30,536,species,A,A,A +Aristida purpurascens,Arrowfeather threeawn,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,arispurp,Human Observation,2004-03-24,BICY,411,NA,26.22,-81.0859,26.2213,-81.0839,WGS84,314,Cell #AE05,"17N 2900049 E, 491423 N",UTM,WGS84,1,30,411,species,A,A,A +Chrysobalanus icaco,Coco-plum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,chryicac,Human Observation,2003-03-25,BICY,618,NA,25.944,-80.9871,25.946,-80.9862,WGS84,314,Cell #AO36,"17N 2869481 E, 501294 N",UTM,WGS84,1,20,618,species,A,A,A +Rhynchospora colorata,Starrush whitetop,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhyncolo,Human Observation,2002-05-07,BICY,168,NA,25.8341,-81.0889,25.8317,-81.0883,WGS84,314,"Cell #AE48, W. of Loop Rd. S of Monroe","17N 2857310 E, 491088 N",UTM,WGS84,1,170,168,species,A,A,A +Phyllanthus caroliniensis subsp. saxicola,Rock Carolina leafflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,phylcarosaxi,Human Observation,2002-11-08,BICY,271,NA,25.7561,-81.0054,25.7563,-81.0064,WGS84,314,"Cell #AM57, origin estimated with ARCMap","17N 2848673 E, 499461 N",UTM,WGS84,1,280,271,species,A,A,A +Psychotria nervosa,Shiny-leaved wild-coffee,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,psycnerv,Human Observation,2004-05-07,BICY,297,NA,25.7238,-80.9174,25.7236,-80.9199,WGS84,314,"Cell #AV60, Hess Hammock","17N 2845103 E, 508290 N",UTM,WGS84,1,270,297,species,A,A,A +Rapanea punctata,"Myrsine, Colicwood",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rapapunc,Human Observation,2003-03-04,BICY,561,NA,26.0296,-81.0943,26.0282,-81.0962,WGS84,314,Cell #AD27,"17N 2878960 E, 490566 N",UTM,WGS84,1,245,561,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-04-29,BICY,607,NA,25.8642,-81.2501,25.8662,-81.252,WGS84,314,Cell #N45,"17N 2860672 E, 474942 N",UTM,WGS84,1,320,607,species,A,A,A +Paspalum monostachyum,Gulfdune paspalum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,paspmono,Human Observation,2002-06-12,BICY,139,NA,26.0416,-81.0282,26.0437,-81.0284,WGS84,314,"Cell #AK25, Middle Pines, east of Cal Stone","17N 2880288 E, 497181 N",UTM,WGS84,1,355,139,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2004-05-04,BICY,343,NA,25.863,-81.1021,25.8608,-81.1019,WGS84,314,Cell #AC45,"17N 2860512 E, 489770 N",UTM,WGS84,1,100,343,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2003-03-04,BICY,563,NA,26.0403,-81.0942,26.0419,-81.0923,WGS84,314,Cell #AD25,"17N 2880145 E, 490578 N",UTM,WGS84,1,50,563,species,A,A,A +Thelypteris kunthii,Southern shield fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelkunt,Human Observation,2003-03-12,BICY,543,NA,26.0617,-81.0309,26.0631,-81.0327,WGS84,314,Cell #AJ23,"17N 2882518 E, 496908 N",UTM,WGS84,1,315,543,species,A,A,A +Hypericum cistifolium,Roundpod St. John's-wort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hypecist,Human Observation,2004-06-02,BICY,356,NA,25.9555,-81.0064,25.9541,-81.0043,WGS84,314,Cell #AM35,"17N 2870752 E, 499364 N",UTM,WGS84,1,135,356,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2003-09-09,BICY,737,NA,26.1814,-81.244,26.1817,-81.2461,WGS84,314,Cell #O10,"17N 2895793 E, 475619 N",UTM,WGS84,1,290,737,species,A,A,A +Taxodium ascendens,Pond cypress,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,taxoasce,Human Observation,2004-03-11,BICY,399,NA,25.7817,-80.9812,25.7801,-80.9827,WGS84,314,Cell #AO54,"17N 2851513 E, 501882 N",UTM,WGS84,1,225,399,species,A,A,A +Vitis rotundifolia,"Muscadine, Muscadine grape",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vitirotu,Human Observation,2002-07-31,BICY,195,NA,26.0499,-81.3429,26.0497,-81.3404,WGS84,314,"Cell #E24, Deep Lake","17N 2881252 E, 465701 N",UTM,WGS84,1,100,195,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2003-05-29,BICY,539,NA,25.7563,-80.9028,25.7583,-80.9018,WGS84,314,Cell #AW57,"17N 2848699 E, 509752 N",UTM,WGS84,1,35,539,species,A,A,A +Erigeron quercifolius,"Southern-fleabane, Oakleaf fleabane",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,erigquer,Human Observation,2004-04-07,BICY,438,NA,26.2498,-81.2265,26.2476,-81.2262,WGS84,314,Cell #Q02,"17N 2903369 E, 477380 N",UTM,WGS84,1,180,438,species,A,A,A +Serenoa repens,Saw palmetto,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sererepe,Human Observation,2004-06-01,BICY,317,NA,25.9346,-81.0368,25.9348,-81.0343,WGS84,314,Cell #AJ37,"17N 2868446 E, 496319 N",UTM,WGS84,1,85,317,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-02-06,BICY,455,NA,25.9529,-81.3444,25.9541,-81.3422,WGS84,314,Cell #E35,"17N 2870515 E, 465524 N",UTM,WGS84,1,65,455,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2004-04-01,BICY,326,NA,26.179,-81.0835,26.1777,-81.0817,WGS84,314,Cell #AE10,"17N 2895514 E, 491661 N",UTM,WGS84,1,140,326,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2003-09-10,BICY,729,NA,26.2428,-80.9525,26.243,-80.9549,WGS84,314,Cell #AR03,"17N 2902579 E, 504740 N",UTM,WGS84,1,275,729,species,A,A,A +Thelypteris kunthii,Southern shield fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelkunt,Human Observation,2003-11-26,BICY,474,NA,25.8255,-80.9092,25.8276,-80.9083,WGS84,314,Cell #AW49,"17N 2856359 E, 509099 N",UTM,WGS84,1,15,474,species,A,A,A +Phlebodium aureum,Golden polypody,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,phleaure,Human Observation,2002-08-02,BICY,199,NA,25.8494,-80.995,25.8502,-80.9974,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,295,199,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2003-04-17,BICY,664,NA,26.2321,-81.0449,26.2343,-81.0448,WGS84,314,Cell #AI04,"17N 2901387 E, 495513 N",UTM,WGS84,1,10,664,species,A,A,A +Tillandsia utriculata,"Giant wild-pine, Giant airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillutri,Human Observation,2004-04-06,BICY,422,NA,25.7633,-80.9177,25.7614,-80.919,WGS84,314,Cell #AV56,"17N 2849471 E, 508257 N",UTM,WGS84,1,315,422,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2002-06-05,BICY,264,NA,26.0206,-81.1546,26.0206,-81.1546,WGS84,314,Cell #X28,"17N 2877975 E, 484532 N",UTM,WGS84,1,160,264,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2004-03-25,BICY,745,NA,26.21,-81.0892,26.2079,-81.0878,WGS84,314,Cell #AE07,"17N 2898939 E, 491088 N",UTM,WGS84,1,140,745,species,A,A,A +Nephrolepis exaltata,Wild Boston fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephexal,Human Observation,2003-06-18,BICY,696,NA,26.047,-81.1762,26.0461,-81.1739,WGS84,314,Cell #V25,"17N 2880903 E, 482375 N",UTM,WGS84,1,125,696,species,A,A,A +Smilax auriculata,Earleaf greenbrier,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smilauri,Human Observation,2003-09-09,BICY,737,NA,26.1814,-81.244,26.1817,-81.2461,WGS84,314,Cell #O10,"17N 2895793 E, 475619 N",UTM,WGS84,1,290,737,species,A,A,A +Saccharum giganteum,Sugarcane plumegrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,saccgiga,Human Observation,2004-06-01,BICY,316,NA,25.9346,-81.0368,25.9352,-81.0391,WGS84,314,Cell #AJ37,"17N 2868446 E, 496319 N",UTM,WGS84,1,300,316,species,A,A,A +Rudbeckia hirta,Blackeyed susan,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rudbhirt,Human Observation,2004-05-05,BICY,329,NA,26.2408,-81.0341,26.2394,-81.0359,WGS84,314,Cell #AJ03,"17N 2902357 E, 496596 N",UTM,WGS84,1,240,329,species,A,A,A +Cyperus haspan,Haspan flatsedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cypehasp,Human Observation,2004-05-13,BICY,428,NA,25.8978,-81.2753,25.8964,-81.2736,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,130,428,species,A,A,A +Spermacoce assurgens,Woodland false buttonweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sperassu,Human Observation,2003-05-23,BICY,530,NA,25.8048,-80.9224,25.8066,-80.9227,WGS84,314,Cell #AU51,"17N 2854064 E, 507777 N",UTM,WGS84,1,5,530,species,A,A,A +Eupatorium serotinum,Lateflowering thoroughwort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupasero,Human Observation,2004-05-06,BICY,341,NA,26.2422,-81.0507,26.24,-81.0504,WGS84,314,Cell #AH03,"17N 2902502 E, 494939 N",UTM,WGS84,1,175,341,species,A,A,A +Ruellia succulenta,Thickleaf wild petunia,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ruelsucc,Human Observation,2002-07-17,BICY,163,NA,26.0432,-81.0379,26.0411,-81.0375,WGS84,314,"Cell #AJ25, Central Pines","17N 2880474 E, 496209 N",UTM,WGS84,1,180,163,species,A,A,A +Spiranthes odorata,"Fragrant lady's-tresses, Marsh lady's-tresses",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,spirodor,Human Observation,2004-06-08,BICY,348,NA,25.8547,-81.0005,25.8568,-81.0001,WGS84,314,Cell #AM46,"17N 2859588 E, 499945 N",UTM,WGS84,1,30,348,species,A,A,A +Acer rubrum,Red maple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,acerrubr,Human Observation,2004-04-29,BICY,404,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,species,A,A,A +Randia aculeata,White indigoberry,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,randacul,Human Observation,2003-01-04,BICY,460,NA,26.2036,-80.9318,26.2058,-80.9315,WGS84,314,Cell #AT07,"17N 2898234 E, 506815 N",UTM,WGS84,1,10,460,species,A,A,A +Berchemia scandens,"rattan vine, Alabama supplejack",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bercscan,Human Observation,2003-09-10,BICY,726,NA,26.2131,-81.3056,26.2109,-81.3057,WGS84,314,Cell #I06,"17N 2899315 E, 469471 N",UTM,WGS84,1,195,726,species,A,A,A +Magnolia virginiana,Sweet-bay,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,magnvirg,Human Observation,2003-11-26,BICY,474,NA,25.8255,-80.9092,25.8276,-80.9083,WGS84,314,Cell #AW49,"17N 2856359 E, 509099 N",UTM,WGS84,1,15,474,species,A,A,A +Thelypteris interrupta,"Interrupted maiden fern, Hottentot fern",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelinte,Human Observation,2004-06-16,BICY,335,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,species,A,A,A +Nephrolepis exaltata,Wild Boston fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,nephexal,Human Observation,2002-08-09,BICY,260,NA,26.1786,-81.0048,26.18,-81.0071,WGS84,314,Cell #AM10,"17N 2895459 E, 499518 N",UTM,WGS84,1,285,260,species,A,A,A +Muhlenbergia capillaris,"Muhlygrass, Hairawnmuhly",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,muhlcapi,Human Observation,2003-03-25,BICY,618,NA,25.944,-80.9871,25.946,-80.9862,WGS84,314,Cell #AO36,"17N 2869481 E, 501294 N",UTM,WGS84,1,20,618,species,A,A,A +Hydrolea corymbosa,Skyflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrcory,Human Observation,2002-11-05,BICY,272,NA,25.9062,-81.22,25.9078,-81.2214,WGS84,314,Cell #Q40,"17N 2865313 E, 477963 N",UTM,WGS84,1,325,272,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2004-03-30,BICY,391,NA,26.1527,-80.8913,26.1549,-80.891,WGS84,314,Cell #AX13,"17N 2892602 E, 510865 N",UTM,WGS84,1,10,391,species,A,A,A +Rhexia mariana,"Pale meadowbeauty, Maryland meadowbeauty",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhexmari,Human Observation,2003-05-03,BICY,652,NA,26.2534,-81.2022,26.2518,-81.2006,WGS84,314,Cell #S02,"17N 2903766 E, 479805 N",UTM,WGS84,1,145,652,species,A,A,A +Centella asiatica,"Coinwort, Spadeleaf",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,centasia,Human Observation,2002-05-31,BICY,129,NA,26.2159,-81.0498,26.2163,-81.0475,WGS84,314,"Cell #AIO6, Kissimmee Billy Area","17N 2899596 E, 495029 N",UTM,WGS84,1,80,129,species,A,A,A +Hydrocotyle,NA,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hydrocotyle sp.,Human Observation,2003-04-29,BICY,734,NA,25.8842,-81.2758,25.8822,-81.2749,WGS84,314,Cell #L43,"17N 2862884 E, 472375 N",UTM,WGS84,1,170,734,genus,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2004-05-04,BICY,343,NA,25.863,-81.1021,25.8608,-81.1019,WGS84,314,Cell #AC45,"17N 2860512 E, 489770 N",UTM,WGS84,1,100,343,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2003-02-26,BICY,590,NA,26.045,-81.1655,26.0428,-81.1655,WGS84,314,Cell #W25,"17N 2880675 E, 483442 N",UTM,WGS84,1,190,590,species,A,A,A +Setaria parviflora,"Knotroot foxtail, Yellow bristlegrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,setaparv,Human Observation,2004-05-13,BICY,429,NA,25.8978,-81.2753,25.9001,-81.2749,WGS84,314,Cell #L41,"17N 2864400 E, 472424 N",UTM,WGS84,1,10,429,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-02-05,BICY,468,NA,26.1795,-80.9405,26.1775,-80.9416,WGS84,314,Cell #AS10,"17N 2895569 E, 505946 N",UTM,WGS84,1,210,468,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2003-07-02,BICY,707,NA,25.6812,-80.9505,25.6827,-80.9524,WGS84,314,Cell #AR65,"17N 2840382 E, 504964 N",UTM,WGS84,1,315,707,species,A,A,A +Ludwigia repens,Creeping primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwrepe,Human Observation,2002-08-28,BICY,228,NA,26.0141,-80.8956,26.0134,-80.8981,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,260,228,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2002-09-18,BICY,233,NA,25.7252,-81.0306,25.7256,-81.033,WGS84,314,Cell #AJ60,"17N 2845250 E, 496927 N",UTM,WGS84,1,290,233,species,A,A,A +Tillandsia paucifolia,"Twisted wild-pine, Potbelly airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillpauc,Human Observation,2003-04-10,BICY,669,NA,26.0691,-81.1605,26.0687,-81.1629,WGS84,314,Cell #W22,"17N 2883351 E, 483950 N",UTM,WGS84,1,265,669,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2003-04-08,BICY,671,NA,26.0603,-81.165,26.0584,-81.1662,WGS84,314,Cell #W23,"17N 2882371 E, 483496 N",UTM,WGS84,1,210,671,species,A,A,A +Panicum rigidulum,Redtop panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirigi,Human Observation,2003-09-10,BICY,727,NA,26.2131,-81.3056,26.2133,-81.3069,WGS84,314,Cell #I06,"17N 2899315 E, 469471 N",UTM,WGS84,1,240,727,species,A,A,A +Agalinis linifolia,Flaxleaf false foxglove,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,agallini,Human Observation,2003-03-25,BICY,690,NA,25.935,-80.9886,25.9338,-80.9864,WGS84,314,Cell #AO37,"17N 2868490 E, 501141 N",UTM,WGS84,1,125,690,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2002-09-17,BICY,196,NA,25.7085,-80.9687,25.7096,-80.9668,WGS84,314,Cell #AQ62,"17N 2843408 E, 503144 N",UTM,WGS84,1,135,196,species,A,A,A +Ipomoea sagittata,Everglades morningglory,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ipomsagi,Human Observation,2002-08-28,BICY,228,NA,26.0141,-80.8956,26.0134,-80.8981,WGS84,314,Cell #AX28,"17N 2877249 E, 510444 N",UTM,WGS84,1,260,228,species,A,A,A +Annona glabra,Pond-apple,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,annoglab,Human Observation,2004-04-15,BICY,386,NA,26.2539,-81.0377,26.2524,-81.0396,WGS84,314,Cell #AJ02,"17N 2903800 E, 496238 N",UTM,WGS84,1,235,386,species,A,A,A +Coreopsis leavenworthii,Leavenworth's tickseed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,coreleav,Human Observation,2003-03-25,BICY,618,NA,25.944,-80.9871,25.946,-80.9862,WGS84,314,Cell #AO36,"17N 2869481 E, 501294 N",UTM,WGS84,1,20,618,species,A,A,A +Vitis rotundifolia,"Muscadine, Muscadine grape",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vitirotu,Human Observation,2002-10-31,BICY,274,NA,25.9152,-81.2644,25.9163,-81.2664,WGS84,314,Cell #M39,"17N 2866314 E, 473518 N",UTM,WGS84,1,305,274,species,A,A,A +Pleopeltis polypodioides var. michauxiana,Resurrection fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pleopolymich,Human Observation,2003-03-14,BICY,552,NA,26.2265,-81.2674,26.2243,-81.2672,WGS84,314,Cell #M05,"17N 2900793 E, 473289 N",UTM,WGS84,1,180,552,species,A,A,A +Andropogon glomeratus var. pumilus,Common bushy bluestem,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,andrglompumi,Human Observation,2004-06-17,BICY,333,NA,25.8815,-81.1742,25.8816,-81.1766,WGS84,314,Cell #V43,"17N 2862570 E, 482551 N",UTM,WGS84,1,260,333,species,A,A,A +Leersia hexandra,Southern cutgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,leerhexa,Human Observation,2003-03-06,BICY,555,NA,26.2322,-81.3052,26.2299,-81.3059,WGS84,314,Cell #I04,"17N 2901439 E, 469519 N",UTM,WGS84,1,205,555,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2002-08-23,BICY,236,NA,25.8448,-81.2201,25.8471,-81.2204,WGS84,314,Cell #Q47,"17N 2858519 E, 477943 N",UTM,WGS84,1,0,236,species,A,A,A +Ludwigia microcarpa,Smallfruit primrosewillow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,ludwmicr,Human Observation,2002-08-02,BICY,199,NA,25.8494,-80.995,25.8502,-80.9974,WGS84,314,Cell #AN46,"17N 2859003 E, 500497 N",UTM,WGS84,1,295,199,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2002-10-29,BICY,290,NA,26.1255,-81.2857,26.1276,-81.2851,WGS84,314,Cell #K16,"17N 2889619 E, 471434 N",UTM,WGS84,1,25,290,species,A,A,A +Conoclinium coelestinum,Blue mistflower,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,conocoel,Human Observation,2004-04-14,BICY,421,NA,26.2176,-81.0845,26.219,-81.0864,WGS84,314,Cell #AE06,"17N 2899785 E, 491558 N",UTM,WGS84,1,310,421,species,A,A,A +Panicum virgatum,Switchgrass,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panivirg,Human Observation,2003-04-04,BICY,678,NA,26.079,-81.098,26.0769,-81.097,WGS84,314,Cell #AD21,"17N 2884432 E, 490194 N",UTM,WGS84,1,165,678,species,A,A,A +Eupatorium mikanioides,"Semaphore eupatorium, Semaphore thoroughwort",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,eupamika,Human Observation,2002-10-29,BICY,291,NA,26.1255,-81.2857,26.1233,-81.2869,WGS84,314,Cell #K16,"17N 2889619 E, 471434 N",UTM,WGS84,1,210,291,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-02-26,BICY,590,NA,26.045,-81.1655,26.0428,-81.1655,WGS84,314,Cell #W25,"17N 2880675 E, 483442 N",UTM,WGS84,1,190,590,species,A,A,A +Baccharis glomeruliflora,Silverling,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,baccglom,Human Observation,2003-05-02,BICY,512,NA,26.1068,-81.3197,26.1068,-81.3174,WGS84,314,Cell #H18,"17N 2887550 E, 468039 N",UTM,WGS84,1,100,512,species,A,A,A +Thelypteris kunthii,Southern shield fern,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,thelkunt,Human Observation,2002-08-09,BICY,261,NA,26.1786,-81.0048,26.1769,-81.0032,WGS84,314,Cell #AM10,"17N 2895459 E, 499518 N",UTM,WGS84,1,145,261,species,A,A,A +Pennisetum purpureum,"Napier grass, Elephantgrass",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,pennpurp,Human Observation,2002-11-08,BICY,288,NA,25.748,-80.9377,25.75,-80.9372,WGS84,314,Cell #AT58,"17N 2847783 E, 506247 N",UTM,WGS84,1,20,288,species,A,A,A +Flaveria linearis,Narrowleaf yellowtops,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,flavline,Human Observation,2004-06-03,BICY,352,NA,26.0243,-81.0653,26.0258,-81.067,WGS84,314,Cell #AG27,"17N 2878374 E, 493467 N",UTM,WGS84,1,335,352,species,A,A,A +Proserpinaca palustris,"Mermaid weed, Marsh mermaidweed",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,prospalu,Human Observation,2004-04-14,BICY,421,NA,26.2176,-81.0845,26.219,-81.0864,WGS84,314,Cell #AE06,"17N 2899785 E, 491558 N",UTM,WGS84,1,310,421,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2003-03-26,BICY,693,NA,25.6592,-81.0263,25.6585,-81.024,WGS84,314,Cell #AK68,"17N 2837939 E, 497357 N",UTM,WGS84,1,110,693,species,A,A,A +Salix caroliniana,Coastal Plain willow,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,salicaro,Human Observation,2002-08-01,BICY,254,NA,26.1693,-81.2554,26.1694,-81.2578,WGS84,314,Cell #N11,"17N 2894454 E, 474478 N",UTM,WGS84,1,280,254,species,A,A,A +Rhynchospora microcarpa,Southern beaksedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,rhynmicr2,Human Observation,2004-03-17,BICY,378,NA,26.186,-81.343,26.1854,-81.3406,WGS84,314,Cell #E09,"17N 2896326 E, 465728 N",UTM,WGS84,1,110,378,species,A,A,A +Harrisella porrecta,Needleroot airplant orchid,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,harrporr,Human Observation,2003-04-16,BICY,660,NA,26.2547,-81.0622,26.2528,-81.0628,WGS84,314,Cell #AG02,"17N 2903897 E, 493787 N",UTM,WGS84,1,200,660,species,A,A,A +Sabal palmetto,Cabbage palm,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,sabapalm,Human Observation,2004-06-02,BICY,355,NA,26.007,-81.0699,26.0092,-81.0692,WGS84,314,Cell #AG29,"17N 2876456 E, 493009 N",UTM,WGS84,1,30,355,species,A,A,A +Eryngium baldwinii,Baldwin's eryngo,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,erynbald,Human Observation,2004-05-05,BICY,328,NA,26.2408,-81.0341,26.243,-81.0343,WGS84,314,Cell #AJ03,"17N 2902357 E, 496596 N",UTM,WGS84,1,0,328,species,A,A,A +Epidendrum rigidum,Stiff-flower star orchid,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,epidrigi,Human Observation,2004-04-29,BICY,404,NA,25.8211,-81.0303,25.8192,-81.0318,WGS84,314,Cell #AJ50,"17N 2855868 E, 496959 N",UTM,WGS84,1,220,404,species,A,A,A +Myrica cerifera,"Wax myrtle, Southern Bayberry",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,myriceri,Human Observation,2004-06-16,BICY,335,NA,26.2329,-81.0986,26.2331,-81.0962,WGS84,314,Cell #AD04,"17N 2901479 E, 490153 N",UTM,WGS84,1,90,335,species,A,A,A +Fuirena breviseta,Saltmarsh umbrellasedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,fuirbrev,Human Observation,2003-03-04,BICY,560,NA,26.0296,-81.0943,26.0296,-81.0918,WGS84,314,Cell #AD27,"17N 2878960 E, 490566 N",UTM,WGS84,1,90,560,species,A,A,A +Smilax laurifolia,"Catbrier, Laurel greenbrier, Bamboo vine",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,smillaur,Human Observation,2003-09-10,BICY,727,NA,26.2131,-81.3056,26.2133,-81.3069,WGS84,314,Cell #I06,"17N 2899315 E, 469471 N",UTM,WGS84,1,240,727,species,A,A,A +Vitis rotundifolia,"Muscadine, Muscadine grape",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,vitirotu,Human Observation,2003-03-05,BICY,568,NA,26.0167,-81.1132,26.0165,-81.1107,WGS84,314,Cell #AB28,"17N 2877539 E, 488676 N",UTM,WGS84,1,95,568,species,A,A,A +Hypericum tetrapetalum,Fourpetal St. John's-wort,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,hypetetr,Human Observation,2004-03-24,BICY,411,NA,26.22,-81.0859,26.2213,-81.0839,WGS84,314,Cell #AE05,"17N 2900049 E, 491423 N",UTM,WGS84,1,30,411,species,A,A,A +Pluchea rosea,Rosy camphorweed,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,plucrose,Human Observation,2003-03-18,BICY,617,NA,25.9166,-81.1158,25.9143,-81.1156,WGS84,314,Cell #AB39,"17N 2866448 E, 488404 N",UTM,WGS84,1,185,617,species,A,A,A +Aristida purpurascens,Arrowfeather threeawn,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,arispurp,Human Observation,2003-02-21,BICY,452,NA,26.0064,-80.9098,26.0048,-80.908,WGS84,314,Cell #AW29,"17N 2876396 E, 509026 N",UTM,WGS84,1,140,452,species,A,A,A +Cyperus haspan,Haspan flatsedge,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,cypehasp,Human Observation,2002-10-31,BICY,276,NA,25.8982,-81.257,25.8975,-81.255,WGS84,314,Cell #N41,"17N 2864436 E, 474256 N",UTM,WGS84,1,110,276,species,A,A,A +Bacopa caroliniana,"Lemon hyssop, Lemon bacopa, Blue waterhyssop",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,bacocaro,Human Observation,2003-05-15,BICY,643,NA,25.9071,-81.3325,25.9056,-81.3342,WGS84,314,Cell #F40,"17N 2865443 E, 466694 N",UTM,WGS84,1,230,643,species,A,A,A +Tillandsia fasciculata var. densispica,"Stiff-leaved wild-pine, Cardinal airplant",Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,tillfascdens,Human Observation,2002-08-29,BICY,251,NA,25.784300000000002,-81.0757,25.7827,-81.0774,WGS84,314,Cell #AF54,"17N 2851797 E, 492406 N",UTM,WGS84,1,230,251,species,A,A,A +Panicum rigidulum,Redtop panicum,Guide to the Vascular Plants of Florida. Second Edition. Richard P. Wunderlin and Bruce F. Hansen. 2003. University Press of Florida,panirigi,Human Observation,2002-05-22,BICY,213,NA,25.7595,-81.0428,25.7604,-81.0449,WGS84,314,Cell #AI56,"17N 2849056 E, 495705 N",UTM,WGS84,1,280,213,species,A,A,A From 268e856e984492620b2ccf6c6355a7bf2f3d30e9 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 14:53:08 -0700 Subject: [PATCH 05/33] add vignettes for DRR use --- vignettes/a01_DRR_Background.Rmd | 53 +++ vignettes/a02_Using_DRR_Template.Rmd | 478 +++++++++++++++++++++++++++ 2 files changed, 531 insertions(+) create mode 100644 vignettes/a01_DRR_Background.Rmd create mode 100644 vignettes/a02_Using_DRR_Template.Rmd diff --git a/vignettes/a01_DRR_Background.Rmd b/vignettes/a01_DRR_Background.Rmd new file mode 100644 index 0000000..d65b993 --- /dev/null +++ b/vignettes/a01_DRR_Background.Rmd @@ -0,0 +1,53 @@ +--- +title: "Getting Started with NPS DRRs" +output: rmarkdown::html_vignette +vignette: > + %\VignetteIndexEntry{Getting Started with NPS DRRs} + %\VignetteEnging{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r setup, include=FALSE} +knitr::opts_chunk$set(echo = FALSE) + +# Learn more about creating websites with Distill at: +# https://rstudio.github.io/distill/website.html + +``` + +[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) + + + +# DRRs: Background + +[Purpose and Scope of Data Release Reports](PurposeAndScope.html) + +This is a template is for use when drafting Data Release Reports. DRRs are created by the National Park Service and provide detailed descriptions of valuable research datasets, including the methods used to collect the data and technical analyses supporting the quality of the measurements. Data Release Reports focus on helping others reuse data rather than presenting results, testing hypotheses, or presenting new interpretations and in-depth analyses. + +# About this Template +This template contains an rmarkdown template file, default folder structure for project files, and all the necessary template files to generate an unformatted .docx file. Upon submission for publication, the .docx file will be ingested by EXstyles, converted to an .xml file and fully formatted according to NPS branding upon final publication. The goal of this process is to relieve data producers, managers, and scientists from the burden of formatting and allow them to focus primarily on content. Consequently, the .docx generated for the publication process may not be visually appealing. The content, however, should focus on quality control, of NPS data packages and evaluate their of utility. + +# How to Start a DRR + +New projects can be established using this template by downloading a zip file of the template and associated files and folders from: [This Link](https://github.com/nationalparkservice/DRR_Template/zipball/master) + +1. [How to Use this Template](HowToUseThisTemplate.html) line-by-line instructions and descriptions for how to use the DRR Template. + +2. [The DRR_Template](https://github.com/nationalparkservice/DRR_Template/blob/master/DRR_to_docx.Rmd) the file you make changes to to generate a DRR. Note: this is not a stand-alone file. To create a DRR please download the [zipped template](https://github.com/nationalparkservice/DRR_Template/zipball/master) with all associated files and folders. + +3. [Bibtex reference file](https://github.com/nationalparkservice/DRR_Template/raw/master/reference.bib) is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text citations to the DRR Template and your References section will automatically be generated for you when you knit the .Rmd to .docx. You should still visually check the final format in the .docx file for accuracy, completion, and formatting. If you would prefer to manually format your citations, feel free to continue doing so. + +4. [DRR_Report](https://github.com/nationalparkservice/DRR_Template/raw/master/DRR_to_docx.docx) an example of the .docx output file that takes into account your edits and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the .Rmd to .docx format in Rstudio). + +# Examples +More will be provided as they are published. The following examples are post-formatting and should be used as examples for content generation only. + +1. [DRR for tabular (csv) datasets](DRAFT_2019_Report_NationalMeanDailyFlowsDataSummary.html) of hydrologic data used for calculating hydrologic metrics as a part of the national Environmental Settings monitoring protocol. + +2. [DRR for geospatial (file geodatabase) data](NPS-NRSS-DRR-2020-1.html) continuing custom areas of analysis used for Environmental Settings monitoring protocol. Report created in Microsoft Word and ported to the template. + +# Tips, FAQs, and Errata +(coming soon) + + diff --git a/vignettes/a02_Using_DRR_Template.Rmd b/vignettes/a02_Using_DRR_Template.Rmd new file mode 100644 index 0000000..af08982 --- /dev/null +++ b/vignettes/a02_Using_DRR_Template.Rmd @@ -0,0 +1,478 @@ +--- +title: "Using the DRR Template" +output: rmarkdown::html_vignette +vignette: > + %\VignetteIndexEntry{Using the DRR Template} + %\VignetteEnging{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r setup, include=FALSE} +RRpackages <- c('markdown', # links to Sundown rendering library + 'rmarkdown', # newer rendering via pandoc + 'pander', # alternative renderer for markdown, + # plus better tables than just knitr + 'knitr', + "devtools", + "R.rsp", # dynamic generation of scientific reports + "rmdHelpers", # misc from Mark Peterson + # thisFileName() thisFile_knit() + 'yaml', # format data into markdown + 'kableExtra', + 'rmdformats', # templates including automatic ToC, + # also use_bookdown() + 'htmltools' # + ) + +inst <- RRpackages %in% installed.packages() +if (length(RRpackages[!inst]) > 0) { + install.packages(RRpackages[!inst], repos = "http://cran.us.r-project.org", dep = TRUE) +} +lapply(RRpackages, library, character.only = TRUE) + +knitr::opts_chunk$set( + echo = TRUE, + comment = " ", + dev = "svg", + tidy.opts = list(width.cutoff = 60), + tidy = TRUE + ) + +``` + +# Overview + +Data Release Reports (DRRs) are created by the National Park Service and +provide detailed descriptions of valuable research datasets, including +the methods used to collect the data and technical analyses supporting +the quality of the measurements. Data Release Reports focus on helping +others reuse data, rather than presenting results, testing hypotheses, +or presenting new interpretations, methods or in-depth analyses. + +DRRs are intended to document the processing of fully-QAed data to their +final (QCed) form in a reproducible and transparent manner. DRRs +document the data collection methods and quality standards used to +prepare and review data prior to release. DRRs present the quality of +resultant data in the context of fitness for their intended use. + +Each DRR cites source and resultant datasets that are published +concurrently and cross-referenced. Associated datasets are made publicly +available with the exception of data that must be protected from release +as per NPS and park-specific policies. + +Data packages that are published concurrently with DRRs are intended to +be independently citable scientific works that can serve as the basis +for subsequent analysis and reporting by NPS or third parties. + +# Project Set-up + +The Template is not a stand-alone file but instead has multiple +associated and dependent files. New projects can be established using by +downloading the Zip file associated with the latest +[release](https://github.com/nationalparkservice/DRR_Template/releases) +of the DRR template repository on GitHub. + +## Folder Structure + +General directory contents are as follows (Figure 1): + +```{r fig1, echo=FALSE, out.width="30%", fig.align="center", fig.cap="Standard project directory structure for Data Release Reports"} +#knitr::include_graphics("FileStructure.PNG") +``` + +- `input` This is the only location (other than the template script + itself) where you you should manually change or edit files. This is + where data files you need to supply should be placed. + + - `figures` If you have figures that are not generated as part of + running this template, place those files here. + +- `output` Do not edit these files. This is where you can find your + final products. Edits to files in this folder will not be + incorporated when you knit the DRR_to_docx.rmd file. Any edits you + make to files in this directory may be overwritten when you knit the + template. + +- `temp` Do not edit these files. These are files that are either used + or generated during when you knit the DRR_to_docx.rmd template. They + may include graphics, text, or data. + +- You can safely ignore most of the other folders (including `docs`, + `my-website`, `vignettes`,`.github`) and files (including + `_config.yml`, `.gitignore`, `.Rhistory`, `index.html`, and + `national-park-service-DRR.csl`). + +# Reproducible Reports + +The following is for users who are using the `DRR_to_docx.rmd` template +file to generate a data release report using RMarkdown. + +## Standard Code Chunks + +In addition to the report outline and a description of content for each +section, the template includes four standard code chunks. + +**YAML Header:** + +The YAML header helps format the DRR. You should not need to edit any of +the YAML header. + +**R code chunks:** + +- `user_edited_parameters`. A series of parameters that are used in + the creation of the DRR and may be re-used in metadata and + associated data package construction. You will need to edit these + parameters for each DRR. + + - `title`. The title of the Data Release Report. + - `reportNumber`. This is optional, and should *only* be included + if publishing in the semi-official DRR series. Set to NULL if + there is no reportNumber. + - `DRR_DSRefID`. This is the DataStore reference ID for the + report. + - `authorNames`. A list of the author's names. + - `authorAffiliations`. A list of the author's affiliations. The + order of author affiliations must match the order of the authors + in the `authorNames` list. Note that the entirety of each + affiliation is enclosed in a single set of quotations. Line + breaks are indicated with the
tag. Do not worry about + indentation or word wrapping. If two authors have the same + affiliation, list the affiliation twice. + - `authorORCID`. A list of ORCID iDs for each author in the format + "xxxx-xxxx-xxxx-xxxx". If an author does not have an ORCID iD, + specify NA (no quotes). The order of ORCID iDs (and NAs) must + correspond to the order of authors in the `authorNames` list. + Future iterations of the DRR Template will pull ORCID iDs from + metadata and eventually from Active Directory. See + [ORCID](https://www.orcid.org/) for more information about ORCID + iDs or to register an ORCID iD. + - `DRRabstract`. The abstract for the DRR (which may be distinct + from the data package abstract). Pay careful attention to + non-standard characters, line breaks, carriage returns, and + curly-quotes. You may find it useful to write the abstract in + NotePad or some other text editor and NOT a word processor (such + as Microsoft Word). Indicate line breaks with \n and a space + between paragraphs - should you want them - using \n\n. The + Abstract should succinctly describe the study, the assay(s) + performed, the resulting data, and their reuse potential, but + should not make any claims regarding new scientific findings. No + references are allowed in this section. A good suggested length + for abstracts is less than 250 words. + - `dataPackageRefID`. DataStore reference ID for the data package + associated with this report. You must have at least one data + package. Eventually, we will automate importing much of this + information from metadata and include the ability to describe + multiple data packages in a single DRR. + - `dataPackageTitle`. The title of the data package. Must match + the title on DataStore (and metadata). + - `dataPackageDescription`. A short title/subtitle or short + description for the data package. Must match the data package + metadata. + - `dataPackageDOI`. Auto-generated, no need to edit or update. + This is the data package DOI. It is based on the DataStore + reference number. + - `dataPackage_fileNames`. List the file names in your data + package. Do NOT include metadata files. For example, include + "my_data.csv" but do NOT include "my_metadata.xml". + - `dataPackage_fileSizes`. List the approximate size of each data + file. Make sure the order of the file sizes corresponds to the + order of file names in `dataPackage_fileNames`. + `dataPackage_fileDescript`. A short description of the + corresponding data file that helps distinguish it from other + data files. A good guideline is 10 words or less. This will be + used in a table summary table so brevity is a priority. If you + have already created metadata for your data package in EML + format, this should be the same text as found in the + "entityDescription" element for each data file. + +- `setup`. Most users will not need to edit this code chunk. There is + one code snippet for loading packages; the `RRpackages` section is a + suite of packages that are used to assist with reproducible + reporting. You may not need these for your report, but we have + included them as part of the base recommended packages. If you plan + to perform you QC as part of the DRR construction process, you can + add a second code snipped to import necessary packages for your QC + process here. + +- `title_do_not_edit`. These parameters are auto-generated based on + either the EML you supplied (when that becomes an option) or the + information you've already supplied under "user-edited-parameters". + You really should not need to edit these parameters. + +- `authors_do_not_edit`. There is no need to edit this chunk. This + writes the author names, ORCID iDs, and affiliations to the .docx + document based on information supplied in user-edited-parameters. + +- `LoadData`. Any datasets you need to load can go here. For most + people these datasets are used to generate summary statistics on + proportions of data that were flagged as accepted (A) accepted, + estimated (AE) and rejected (R) during the quality control process. + +- `FileTable`. Do not edit. Generates a table of file names, sizes, + and descriptions in the data package being described by the DRR. + +- `dataFlaggingTable`. This sample code provides a summary table + defining the suggested data flagging codes. There is no need to edit + this table. + +- `Listing`. Appendix A, by default is the code listing. This will + generate all code used in generating the report and data packages. + In most cases, code listing is not required. If all QA/QC processes + and data manipulations were performed elsewhere, you should cite + that code (in the methods and references) and leave the "listing + code chunk with the default settings of eval=FALSE and echo=FALSE. + If you have developed custom scripts, you can add those to DataStore + with the reference "Script" and cite them in the DRR. + +- `session-info` is the information about the versions of R and + packages used in generating the report. In most cases, you do not + need to report session info (leave the session-info code chunk + parameters in their default state: eval=FALSE). Session and version + information is only necessary if you have set the "Listing" code + chunk in appendix A to eval=TRUE. In that case, change the "session + info" code chunk parameters to eval=TRUE. + +## Citations + +### Automating Citations + +To automate citations, add the citation in bibtex format to the file +"references.bib". You can manually copy and paste the bibtex for each +reference in, or you can search for it from within Rstudio. From within +Rstudio, make sure you are editing this document using the "Visual" view +(as opposed to "Source"). From the "Insert" drop-down menu, select "\@ +Citation..." (shortcut: Cntrl-Shift-F8). This will open a Graphical User +Interface (GUI) tool where you can view all the citations in your +reference.bib file as well as search multiple databases for references, +automatically insert the bibtex for the reference into your +references.bib file (and customize the unique identifier if you'd like) +and insert the in-text citation into the DRR template. + +```{r fig2, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Source vs. Visual editing of the Template and how to access the citation manager."} +#knitr::include_graphics("RMD_vis_source.png") +``` + +```{r fig3, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Using the citation manager."} +#knitr::include_graphics("R_citation_manager.png") +``` + +Once a reference is in your references.bib file, using the Visual view +of the template you can simply type the '\@' symbol and select which +reference to insert in the text. + +If you need to edit how the citation is displayed after inserting it +into the text, switch back to the "Source" view. Each bibtex citation +should start with a unique identifier; the example reference in the +supplied references.bib file has the unique identifier +"@article{Scott1994,". Using the "Source" view in Rstudio, insert the +reference in your text, by combining the "at" symbol with the portion of +the unique identifier after the curly bracket: @Scott1994 . + +| Syntax | Result | +|------------------------------------|-----------------------------------| +| `@Scott1994` concludes that ... | Scott et al., 1994 concludes that ... | +| `@Scott1994[p.33]` concludes that ... | Scott (1994, p.33) concludes that ... | +| ... end of sentence `[@Scott1994]`. | ... end of sentence (Scott et al., 1994). | +| ... end of sentence `[see @Scott1994,p.33]`. | ... end of sentence (see Scott et al. 1994,p.33). | +| delineate multiple authors with colon: `[@Scott1994; @aberdeen1958]` | delineate multiple authors with colon: (Scott et al., 1994; Aberdeen, 1958) | +| Scott et al. conclude that .... [-@Scott1994] | Scott et al. conclude that . . . (1994) | + + +The full citation, properly formatted, will be included in a "References" section at the end of the rendered MS Word document. . . though it is also worth visually +inspecting the .docx for citation completeness and formatting. + +### Manual citations + +If you would like to format your citations manually, please feel free to +do so. Make sure to look at the References section for how to +properly format each citation type. + +# Editing the Text + +The following text in the body of the DRR template will need to be +edited to customize it to each data package. + +### Data Records + +This is a required section and consists of two subheadings: + +- **Data inputs** - an optional subsection used to describe datasets + that the data package is based on if it is a re-analysis, + reorganization, or re-integration of prevously existing data sets. + +- **Summary of datasts created** - this is a required section used to + explain each data record associated with the work (for instance, a + data package), including the DOI indicating where this information + is stored. It shoudl also provide an overview of the data files and + their formats. Each external data record should be cited. + +Sample text is included that uses r code to incorporate previously +specified parameters such as the data package title, file names, and +DOI. + +A code for a sample table summarizing the contents of the data package +(except the metadata) is provided. + +### Data Quality + +This is a required section. and the text includes multiple suggested +text elements and code for an example table defining data flagging +codes. Near future development here will incorporate additional optional +tables to summarize the data quality based on the flags in the data +sets. + +### Usage Notes + +This is a required section that should contain brief instructions to +assist other researchers with reuse of the data. This may include +discussion of software packages (with appropriate citations) that are +suitable for analysing the assay data files, suggested downstream +processing steps (e.g. normalization, etc.), or tips for integrating or +comparing the data records with other datasets. Authors are encouraged +to provide code, programs or data-processing workflows if they may help +others understand or use the data. + +### Methods + +This is a required section that cites previous methods used but should +also be detailed enough in describing data production including the +experimental design, data acquisition assays, and any computational +processing (e.g. normalization, QA, QC) such that others can understand +the methods without referring to associated publications. + +Optional sub-sections within the methods include: + +- **Data Collection and Sampling** +- **Additional Data Sources** +- **Data Processing** +- **Code availability** + +### References + +This required section includes full bibliographic references for each +paper, chapter, book, data package, dataset, protocol, etc cited within +the DRR. + +There are numerous examples of proper formatting for each of these. +Future versions of the DRR will enable automatic reference formatting +given a correctly formatted bibtex file with the references (.bib). + +## Figures + +Figures should be inserted using code chunks in all cases so that figure +settings can be set in the chunk header. The chunk header should at a +minimum set the fig.align parameter to “center” and the specify the +figure caption (fig.cap parameter). Inserting figures this way will +ensure that the caption is properly formatted and it will apply copy the +caption to the figure’s “alt text” tag, making it 508-compliant. + +For example: + +```` markdown +`r ''````{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} +knitr::include_graphics("ProcessingWorkflow.png") +``` +```` + +Results in: + +```{r fig4, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} +#knitr::include_graphics("ProcessingWorkflow.png") +``` + +## Tables + +Tables should be created using the kable function. Specifying the +caption in the kable function call (as opposed to inline markdown text) +will ensure that the caption is appropriately formatted. + +For example: + +```` markdown +`r ''````{r Table2, echo=FALSE} +c1<-c("Protocol1","Protocol2","Protocol3") +c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") +c3<-c("Site 1","Site 2","Site 3") +c4<-c("Date 1","Date 2","Date 3") +c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") +Table2<-data.frame(c1,c2,c3,c4,c5) + +kable(Table2, + col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), + caption="**Table 1.** Monitoring study example Data Records table.") %>% + kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) +``` +```` + +Results in: + +```{r Table2, echo=FALSE} +c1<-c("Protocol1","Protocol2","Protocol3") +c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") +c3<-c("Site 1","Site 2","Site 3") +c4<-c("Date 1","Date 2","Date 3") +c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") +Table2<-data.frame(c1,c2,c3,c4,c5) + +kable(Table2, + col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), + caption="**Table 1.** Monitoring study example Data Records table.") %>% + kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) +``` + +# Publishing DRRs + +## Report Numbers + +Because data release reports and associated data packages are +cross-referential, report numbers are typically assigned early in data +processing and quality evaluation. + +- **DataStore Reference Numbers.** When developing a report and data + packages, DataStore references should be created as early in the + process as practicable. While the report and data packages are in + development, these should not be activated. + +- **Report Numbers.** If you are planning to publish a Data Release + Report with an official DRR number, please contact the IMD Deputy + Chief with the DataStore reference number associated with the DRR. + +- **Persistent Identifiers.** Digital object identifiers (DOIs) will + be assigned to all DRRs and concurrently published data packages. + DOIs will resolve to a DataStore Reference; DOIs are reserved when a + draft reference is initiated in DataStore. They are not activated + until the publication process, including relevant review, is + complete. + +DRR DOIs have the format: + +Data package DOIs have the format: + +Where the "xxxxxx" is the 7-digit DataStore reference number. + +## Liability Statements + +Under no circumstances should reports and associated data packages or +metadata published in the DRR series contain disclaimers or text that +suggests that the work does not meet scientific integrity or information +quality standards of the National Park Service. The following +disclaimers are suitable for use, depending on whether the data are +provisional or final (or approved or certified). + +> **For approved & published data sets:** "Unless otherwise stated, all +> data, metadata and related materials are considered to satisfy the +> quality standards relative to the purpose for which the data were +> collected. Although these data and associated metadata have been +> reviewed for accuracy and completeness and approved for release by the +> National Park Service Inventory and Monitoring Division, no warranty +> expressed or implied is made regarding the display or utility of the +> data for other purposes, nor on all computer systems, nor shall the +> act of distribution constitute any such warranty." + +> **For provisional data:** "The data you have secured from the National +> Park Service (NPS) database identified as [database name] have not +> received approval for release by the NPS Inventory and Monitoring +> Division, and as such are provisional and subject to revision. The +> data are released on the condition that neither the NPS nor the U.S. +> Government shall be held liable for any damages resulting from its +> authorized or unauthorized use." From e04508a38c8aa9e1c75b08a6260ec9ee82ed497f Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 14:53:26 -0700 Subject: [PATCH 06/33] update via devtools::document and pkgdown --- docs/404.html | 15 + docs/LICENSE-text.html | 13 + docs/LICENSE.html | 13 + docs/articles/QCkit.html | 15 + docs/articles/a01_DRR_Background.html | 208 +++++ docs/articles/a02_Using_DRR_Template.html | 661 +++++++++++++++ .../bsTable-3.3.7/bootstrapTable.js | 801 ++++++++++++++++++ .../bsTable-3.3.7/bootstrapTable.min.css | 14 + .../kePrint-0.0.1/kePrint.js | 8 + .../lightable-0.0.1/lightable.css | 272 ++++++ docs/articles/index.html | 19 +- docs/authors.html | 13 + docs/index.html | 15 + docs/news/index.html | 13 + docs/pkgdown.yml | 4 +- docs/reference/DC_col_check.html | 13 + docs/reference/QCkit-package.html | 13 + docs/reference/check_dc_cols.html | 13 + docs/reference/check_te.html | 13 + docs/reference/convert_datetime_format.html | 13 + docs/reference/convert_long_to_utm.html | 13 + docs/reference/convert_utm_to_ll.html | 13 + docs/reference/create_datastore_script.html | 13 + docs/reference/fix_utc_offset.html | 13 + docs/reference/fuzz_location.html | 13 + docs/reference/get_custom_flags.html | 13 + docs/reference/get_dc_flags.html | 13 + docs/reference/get_df_flags.html | 13 + docs/reference/get_dp_flags.html | 13 + docs/reference/get_elevation.html | 13 + docs/reference/get_park_polygon.html | 13 + docs/reference/get_taxon_rank.html | 13 + docs/reference/get_utm_zone.html | 13 + docs/reference/index.html | 13 + docs/reference/long2UTM.html | 13 + docs/reference/order_cols.html | 13 + docs/reference/replace_blanks.html | 13 + docs/reference/te_check.html | 13 + docs/reference/utm_to_ll.html | 13 + docs/reference/validate_coord.html | 13 + docs/sitemap.xml | 6 + .../skeleton/skeleton.Rmd | 2 +- 42 files changed, 2414 insertions(+), 3 deletions(-) create mode 100644 docs/articles/a01_DRR_Background.html create mode 100644 docs/articles/a02_Using_DRR_Template.html create mode 100644 docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js create mode 100644 docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.min.css create mode 100644 docs/articles/a02_Using_DRR_Template_files/kePrint-0.0.1/kePrint.js create mode 100644 docs/articles/a02_Using_DRR_Template_files/lightable-0.0.1/lightable.css diff --git a/docs/404.html b/docs/404.html index 5be2d8c..1524df3 100644 --- a/docs/404.html +++ b/docs/404.html @@ -44,6 +44,21 @@
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    • diff --git a/docs/articles/a01_DRR_Background.html b/docs/articles/a01_DRR_Background.html new file mode 100644 index 0000000..a90167b --- /dev/null +++ b/docs/articles/a01_DRR_Background.html @@ -0,0 +1,208 @@ + + + + + + + +Getting Started with NPS DRRs • QCkit + + + + + + + + + + + + +
    +
    + + + + +
    +
    +
    +

    Getting Started with NPS DRRs

    + + + Source: vignettes/a01_DRR_Background.Rmd + + +
    + + + + +

    Lifecycle: experimental

    +
    +

    DRRs: Background +

    +

    Purpose and Scope of Data Release +Reports

    +

    This is a template is for use when drafting Data Release Reports. +DRRs are created by the National Park Service and provide detailed +descriptions of valuable research datasets, including the methods used +to collect the data and technical analyses supporting the quality of the +measurements. Data Release Reports focus on helping others reuse data +rather than presenting results, testing hypotheses, or presenting new +interpretations and in-depth analyses.

    +
    +
    +

    About this Template +

    +

    This template contains an rmarkdown template file, default folder +structure for project files, and all the necessary template files to +generate an unformatted .docx file. The file will be ingested by +EXstyles, converted to an .xml file and fully formatted according to NPS +branding upon final publication. The goal of this process is to relieve +data producers, managers, and scientists from the burden of formatting +and allow them to focus primarily on content. The content should +document the collection, processing, quality control, of NPS data +packages and evaluate their of utility.

    +

    This template is under active development to improve style and 508 +compliance.

    +
    +
    +

    How to Start a DRR +

    +

    New projects can be established using this template by downloading a +zip file of the template and associated files and folders from: This +Link

    +
      +

    1. How to Use this Template +line-by-line instructions and descriptions for how to use the DRR +Template.

      2. +

    2. The +DRR_Template the file you make changes to to generate a DRR. Note: +this is not a stand-alone file. To create a DRR please download the zipped +template with all associated files and folders.

      3. +

    3. Bibtex +reference file is used if you want to automate your citations. Add +each citation in bibtex format to this file and save it. Add in-text +citations to the DRR Template and your References section will +automatically be generated for you when you knit the .Rmd to .docx. You +should still visually check the final format in the .docx file for +accuracy, completion, and formatting. If you would prefer to manually +format your citations, feel free to continue doing so.

      4. +

    4. DRR_Report +an example of the .docx output file that takes into account your edits +and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the +.Rmd to .docx format in Rstudio).

      5. +
    +
    +
    +

    Examples +

    +

    More will be provided as they are published. The following examples +are post-formatting and should be used as examples for content +generation only.

    +
      +

    1. DRR for +tabular (csv) datasets of hydrologic data used for calculating +hydrologic metrics as a part of the national Environmental Settings +monitoring protocol.

      2. +

    2. DRR for geospatial (file +geodatabase) data continuing custom areas of analysis used for +Environmental Settings monitoring protocol. Report created in Microsoft +Word and ported to the template.

      3. +
    +
    +
    +

    Tips, FAQs, and Errata +

    +

    (coming soon)

    +
    +
    + + + +
    + + + +
    +

    +

    Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

    +
    + +
    +

    +

    Site built with pkgdown 2.0.7.

    +
    + +
    +
    + + + + + + + + diff --git a/docs/articles/a02_Using_DRR_Template.html b/docs/articles/a02_Using_DRR_Template.html new file mode 100644 index 0000000..18adf6c --- /dev/null +++ b/docs/articles/a02_Using_DRR_Template.html @@ -0,0 +1,661 @@ + + + + + + + +Using the DRR Template • QCkit + + + + + + + + + + + + +
    +
    + + + + +
    + +
    +
    +
    +

    Using the DRR Template

    + + + Source: vignettes/a02_Using_DRR_Template.Rmd + + +
    + + + +
    +

    Overview +

    +

    Data Release Reports (DRRs) are created by the National Park Service +and provide detailed descriptions of valuable research datasets, +including the methods used to collect the data and technical analyses +supporting the quality of the measurements. Data Release Reports focus +on helping others reuse data, rather than presenting results, testing +hypotheses, or presenting new interpretations, methods or in-depth +analyses.

    +

    DRRs are intended to document the processing of fully-QAed data to +their final (QCed) form in a reproducible and transparent manner. DRRs +document the data collection methods and quality standards used to +prepare and review data prior to release. DRRs present the quality of +resultant data in the context of fitness for their intended use.

    +

    Each DRR cites source and resultant datasets that are published +concurrently and cross-referenced. Associated datasets are made publicly +available with the exception of data that must be protected from release +as per NPS and park-specific policies.

    +

    Data packages that are published concurrently with DRRs are intended +to be independently citable scientific works that can serve as the basis +for subsequent analysis and reporting by NPS or third parties.

    +
    +
    +

    Project Set-up +

    +

    The Template is not a stand-alone file but instead has multiple +associated and dependent files. New projects can be established using by +downloading the Zip file associated with the latest release +of the DRR template repository on GitHub.

    +
    +

    Folder Structure +

    +

    General directory contents are as follows (Figure 1):

    +
      +
    • +

      input This is the only location (other than the +template script itself) where you you should manually change or edit +files. This is where data files you need to supply should be placed.

      +
        +
      • +figures If you have figures that are not generated as +part of running this template, place those files here.
        • +
      +
      • +

    • output Do not edit these files. This is where you +can find your final products. Edits to files in this folder will not be +incorporated when you knit the DRR_to_docx.rmd file. Any edits you make +to files in this directory may be overwritten when you knit the +template.

      • +

    • temp Do not edit these files. These are files that +are either used or generated during when you knit the DRR_to_docx.rmd +template. They may include graphics, text, or data.

      • +

    • You can safely ignore most of the other folders (including +docs, my-website, +vignettes,.github) and files (including +_config.yml, .gitignore, +.Rhistory, index.html, and +national-park-service-DRR.csl).

      • +
    +
    +
    +
    +

    Reproducible Reports +

    +

    The following is for users who are using the +DRR_to_docx.rmd template file to generate a data release +report using RMarkdown.

    +
    +

    Standard Code Chunks +

    +

    In addition to the report outline and a description of content for +each section, the template includes four standard code chunks.

    +

    YAML Header:

    +

    The YAML header helps format the DRR. You should not need to edit any +of the YAML header.

    +

    R code chunks:

    +
      +
    • +

      user_edited_parameters. A series of parameters that +are used in the creation of the DRR and may be re-used in metadata and +associated data package construction. You will need to edit these +parameters for each DRR.

      +
        +
      • +title. The title of the Data Release Report.
        • +
      • +reportNumber. This is optional, and should +only be included if publishing in the semi-official DRR series. +Set to NULL if there is no reportNumber.
        • +
      • +DRR_DSRefID. This is the DataStore reference ID for the +report.
        • +
      • +authorNames. A list of the author’s names.
        • +
      • +authorAffiliations. A list of the author’s +affiliations. The order of author affiliations must match the order of +the authors in the authorNames list. Note that the entirety +of each affiliation is enclosed in a single set of quotations. Line +breaks are indicated with the
        tag. Do not worry about indentation +or word wrapping. If two authors have the same affiliation, list the +affiliation twice.
        • +
      • +authorORCID. A list of ORCID iDs for each author in the +format “xxxx-xxxx-xxxx-xxxx”. If an author does not have an ORCID iD, +specify NA (no quotes). The order of ORCID iDs (and NAs) must correspond +to the order of authors in the authorNames list. Future +iterations of the DRR Template will pull ORCID iDs from metadata and +eventually from Active Directory. See ORCID for more information about ORCID +iDs or to register an ORCID iD.
        • +
      • +DRRabstract. The abstract for the DRR (which may be +distinct from the data package abstract). Pay careful attention to +non-standard characters, line breaks, carriage returns, and +curly-quotes. You may find it useful to write the abstract in NotePad or +some other text editor and NOT a word processor (such as Microsoft +Word). Indicate line breaks with and a space between paragraphs - should +you want them - using . The Abstract should succinctly describe the +study, the assay(s) performed, the resulting data, and their reuse +potential, but should not make any claims regarding new scientific +findings. No references are allowed in this section. A good suggested +length for abstracts is less than 250 words.
        • +
      • +dataPackageRefID. DataStore reference ID for the data +package associated with this report. You must have at least one data +package. Eventually, we will automate importing much of this information +from metadata and include the ability to describe multiple data packages +in a single DRR.
        • +
      • +dataPackageTitle. The title of the data package. Must +match the title on DataStore (and metadata).
        • +
      • +dataPackageDescription. A short title/subtitle or short +description for the data package. Must match the data package +metadata.
        • +
      • +dataPackageDOI. Auto-generated, no need to edit or +update. This is the data package DOI. It is based on the DataStore +reference number.
        • +
      • +dataPackage_fileNames. List the file names in your data +package. Do NOT include metadata files. For example, include +“my_data.csv” but do NOT include “my_metadata.xml”.
        • +
      • +dataPackage_fileSizes. List the approximate size of +each data file. Make sure the order of the file sizes corresponds to the +order of file names in dataPackage_fileNames. +dataPackage_fileDescript. A short description of the +corresponding data file that helps distinguish it from other data files. +A good guideline is 10 words or less. This will be used in a table +summary table so brevity is a priority. If you have already created +metadata for your data package in EML format, this should be the same +text as found in the “entityDescription” element for each data +file.
        • +
      +
      • +

    • setup. Most users will not need to edit this code +chunk. There is one code snippet for loading packages; the +RRpackages section is a suite of packages that are used to +assist with reproducible reporting. You may not need these for your +report, but we have included them as part of the base recommended +packages. If you plan to perform you QC as part of the DRR construction +process, you can add a second code snipped to import necessary packages +for your QC process here.

      • +

    • title_do_not_edit. These parameters are +auto-generated based on either the EML you supplied (when that becomes +an option) or the information you’ve already supplied under +“user-edited-parameters”. You really should not need to edit these +parameters.

      • +

    • authors_do_not_edit. There is no need to edit this +chunk. This writes the author names, ORCID iDs, and affiliations to the +.docx document based on information supplied in +user-edited-parameters.

      • +

    • LoadData. Any datasets you need to load can go here. +For most people these datasets are used to generate summary statistics +on proportions of data that were flagged as accepted (A) accepted, +estimated (AE) and rejected (R) during the quality control +process.

      • +

    • FileTable. Do not edit. Generates a table of file +names, sizes, and descriptions in the data package being described by +the DRR.

      • +

    • dataFlaggingTable. This sample code provides a +summary table defining the suggested data flagging codes. There is no +need to edit this table.

      • +

    • Listing. Appendix A, by default is the code listing. +This will generate all code used in generating the report and data +packages. In most cases, code listing is not required. If all QA/QC +processes and data manipulations were performed elsewhere, you should +cite that code (in the methods and references) and leave the “listing +code chunk with the default settings of eval=FALSE and echo=FALSE. If +you have developed custom scripts, you can add those to DataStore with +the reference”Script” and cite them in the DRR.

      • +

    • session-info is the information about the versions +of R and packages used in generating the report. In most cases, you do +not need to report session info (leave the session-info code chunk +parameters in their default state: eval=FALSE). Session and version +information is only necessary if you have set the “Listing” code chunk +in appendix A to eval=TRUE. In that case, change the “session info” code +chunk parameters to eval=TRUE.

      • +
    +
    +
    +

    Citations +

    +
    +

    Automating Citations +

    +

    To automate citations, add the citation in bibtex format to the file +“references.bib”. You can manually copy and paste the bibtex for each +reference in, or you can search for it from within Rstudio. From within +Rstudio, make sure you are editing this document using the “Visual” view +(as opposed to “Source”). From the “Insert” drop-down menu, select “@ +Citation…” (shortcut: Cntrl-Shift-F8). This will open a Graphical User +Interface (GUI) tool where you can view all the citations in your +reference.bib file as well as search multiple databases for references, +automatically insert the bibtex for the reference into your +references.bib file (and customize the unique identifier if you’d like) +and insert the in-text citation into the DRR template.

    +

    Once a reference is in your references.bib file, using the Visual +view of the template you can simply type the ‘@’ symbol and select which +reference to insert in the text.

    +

    If you need to edit how the citation is displayed after inserting it +into the text, switch back to the “Source” view. Each bibtex citation +should start with a unique identifier; the example reference in the +supplied references.bib file has the unique identifier “@article{Scott1994,”. Using the “Source” view in +Rstudio, insert the reference in your text, by combining the “at” symbol +with the portion of the unique identifier after the curly bracket: @Scott1994 .

    + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    SyntaxResult
    +@Scott1994 concludes that …Scott et al., 1994 concludes that …
    +@Scott1994[p.33] concludes that …Scott (1994, p.33) concludes that …
    … end of sentence [@Scott1994].… end of sentence (Scott et al., 1994).
    … end of sentence [see @Scott1994,p.33].… end of sentence (see Scott et al. 1994,p.33).
    delineate multiple authors with colon: +[@Scott1994; @aberdeen1958] +delineate multiple authors with colon: (Scott et al., 1994; +Aberdeen, 1958)
    Scott et al. conclude that …. [-@Scott1994] +Scott et al. conclude that . . . (1994)
    +

    The full citation, properly formatted, will be included in a +“References” section at the end of the rendered MS Word document. . . +though it is also worth visually inspecting the .docx for citation +completeness and formatting.

    +
    +
    +

    Manual citations +

    +

    If you would like to format your citations manually, please feel free +to do so. Make sure to look at the References section for how to +properly format each citation type.

    +
    +
    +
    +
    +

    Editing the Text +

    +

    The following text in the body of the DRR template will need to be +edited to customize it to each data package.

    +
    +

    Data Records +

    +

    This is a required section and consists of two subheadings:

    +
      +

    • Data inputs - an optional subsection used to +describe datasets that the data package is based on if it is a +re-analysis, reorganization, or re-integration of prevously existing +data sets.

      • +

    • Summary of datasts created - this is a required +section used to explain each data record associated with the work (for +instance, a data package), including the DOI indicating where this +information is stored. It shoudl also provide an overview of the data +files and their formats. Each external data record should be +cited.

      • +
    +

    Sample text is included that uses r code to incorporate previously +specified parameters such as the data package title, file names, and +DOI.

    +

    A code for a sample table summarizing the contents of the data +package (except the metadata) is provided.

    +
    +
    +

    Data Quality +

    +

    This is a required section. and the text includes multiple suggested +text elements and code for an example table defining data flagging +codes. Near future development here will incorporate additional optional +tables to summarize the data quality based on the flags in the data +sets.

    +
    +
    +

    Usage Notes +

    +

    This is a required section that should contain brief instructions to +assist other researchers with reuse of the data. This may include +discussion of software packages (with appropriate citations) that are +suitable for analysing the assay data files, suggested downstream +processing steps (e.g. normalization, etc.), or tips for integrating or +comparing the data records with other datasets. Authors are encouraged +to provide code, programs or data-processing workflows if they may help +others understand or use the data.

    +
    +
    +

    Methods +

    +

    This is a required section that cites previous methods used but +should also be detailed enough in describing data production including +the experimental design, data acquisition assays, and any computational +processing (e.g. normalization, QA, QC) such that others can understand +the methods without referring to associated publications.

    +

    Optional sub-sections within the methods include:

    +
      +
    • Data Collection and Sampling
      • +
    • Additional Data Sources
      • +
    • Data Processing
      • +
    • Code availability
      • +
    +
    +
    +

    References +

    +

    This required section includes full bibliographic references for each +paper, chapter, book, data package, dataset, protocol, etc cited within +the DRR.

    +

    There are numerous examples of proper formatting for each of these. +Future versions of the DRR will enable automatic reference formatting +given a correctly formatted bibtex file with the references (.bib).

    +
    +
    +

    Figures +

    +

    Figures should be inserted using code chunks in all cases so that +figure settings can be set in the chunk header. The chunk header should +at a minimum set the fig.align parameter to “center” and the specify the +figure caption (fig.cap parameter). Inserting figures this way will +ensure that the caption is properly formatted and it will apply copy the +caption to the figure’s “alt text” tag, making it 508-compliant.

    +

    For example:

    +
    ```{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} 
+knitr::include_graphics("ProcessingWorkflow.png")
+```
    +

    Results in:

    +
    +
    +

    Tables +

    +

    Tables should be created using the kable function. Specifying the +caption in the kable function call (as opposed to inline markdown text) +will ensure that the caption is appropriately formatted.

    +

    For example:

    +
    ```{r Table2, echo=FALSE}
+c1<-c("Protocol1","Protocol2","Protocol3")
+c2<-c("Park Unit 1","Park Unit 2","Park Unit 3")
+c3<-c("Site 1","Site 2","Site 3")
+c4<-c("Date 1","Date 2","Date 3")
+c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX")
+Table2<-data.frame(c1,c2,c3,c4,c5)
+
+kable(Table2, 
+      col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"),
+      caption="**Table 1.** Monitoring study example Data Records table.") %>%
+  kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F)
+```
    +

    Results in:

    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +Table 1. Monitoring study example Data Records table. +
    +Subjects + +Park Units + +Locations + +Sampling Dates + +Data +
    +Protocol1 + +Park Unit 1 + +Site 1 + +Date 1 + +GEOXXXXX +
    +Protocol2 + +Park Unit 2 + +Site 2 + +Date 2 + +GEOXXXXX +
    +Protocol3 + +Park Unit 3 + +Site 3 + +Date 3 + +GEOXXXXX +
    +
    +
    +
    +

    Publishing DRRs +

    +
    +

    Report Numbers +

    +

    Because data release reports and associated data packages are +cross-referential, report numbers are typically assigned early in data +processing and quality evaluation.

    +
      +

    • DataStore Reference Numbers. When developing a +report and data packages, DataStore references should be created as +early in the process as practicable. While the report and data packages +are in development, these should not be activated.

      • +

    • Report Numbers. If you are planning to publish a +Data Release Report with an official DRR number, please contact the IMD +Deputy Chief with the DataStore reference number associated with the +DRR.

      • +

    • Persistent Identifiers. Digital object +identifiers (DOIs) will be assigned to all DRRs and concurrently +published data packages. DOIs will resolve to a DataStore Reference; +DOIs are reserved when a draft reference is initiated in DataStore. They +are not activated until the publication process, including relevant +review, is complete.

      • +
    +

    DRR DOIs have the format: https://doi.org/10.36967/xxxxxxx

    +

    Data package DOIs have the format: https://doi.org/10.57830/xxxxxxx

    +

    Where the “xxxxxx” is the 7-digit DataStore reference number.

    +
    +
    +

    Liability Statements +

    +

    Under no circumstances should reports and associated data packages or +metadata published in the DRR series contain disclaimers or text that +suggests that the work does not meet scientific integrity or information +quality standards of the National Park Service. The following +disclaimers are suitable for use, depending on whether the data are +provisional or final (or approved or certified).

    +
    +

    For approved & published data sets: “Unless +otherwise stated, all data, metadata and related materials are +considered to satisfy the quality standards relative to the purpose for +which the data were collected. Although these data and associated +metadata have been reviewed for accuracy and completeness and approved +for release by the National Park Service Inventory and Monitoring +Division, no warranty expressed or implied is made regarding the display +or utility of the data for other purposes, nor on all computer systems, +nor shall the act of distribution constitute any such warranty.”

    +
    +
    +

    For provisional data: “The data you have secured +from the National Park Service (NPS) database identified as [database +name] have not received approval for release by the NPS Inventory and +Monitoring Division, and as such are provisional and subject to +revision. The data are released on the condition that neither the NPS +nor the U.S. Government shall be held liable for any damages resulting +from its authorized or unauthorized use.”

    +
    +
    +
    +
    + + + +
    + + + +
    +

    +

    Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

    +
    + +
    +

    +

    Site built with pkgdown 2.0.7.

    +
    + +
    +
    + + + + + + + + diff --git a/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js b/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js new file mode 100644 index 0000000..0c83d3b --- /dev/null +++ b/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js @@ -0,0 +1,801 @@ +/* ======================================================================== + * Bootstrap: tooltip.js v3.4.1 + * https://getbootstrap.com/docs/3.4/javascript/#tooltip + * Inspired by the original jQuery.tipsy by Jason Frame + * ======================================================================== + * Copyright 2011-2019 Twitter, Inc. + * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) + * ======================================================================== */ + ++function ($) { + 'use strict'; + + var DISALLOWED_ATTRIBUTES = ['sanitize', 'whiteList', 'sanitizeFn'] + + var uriAttrs = [ + 'background', + 'cite', + 'href', + 'itemtype', + 'longdesc', + 'poster', + 'src', + 'xlink:href' + ] + + var ARIA_ATTRIBUTE_PATTERN = /^aria-[\w-]*$/i + + var DefaultWhitelist = { + // Global attributes allowed on any supplied element below. + '*': ['class', 'dir', 'id', 'lang', 'role', ARIA_ATTRIBUTE_PATTERN], + a: ['target', 'href', 'title', 'rel'], + area: [], + b: [], + br: [], + col: [], + code: [], + div: [], + em: [], + hr: [], + h1: [], + h2: [], + h3: [], + h4: [], + h5: [], + h6: [], + i: [], + img: ['src', 'alt', 'title', 'width', 'height'], + li: [], + ol: [], + p: [], + pre: [], + s: [], + small: [], + span: [], + sub: [], + sup: [], + strong: [], + u: [], + ul: [] + } + + /** + * A pattern that recognizes a commonly useful subset of URLs that are safe. + * + * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts + */ + var SAFE_URL_PATTERN = /^(?:(?:https?|mailto|ftp|tel|file):|[^&:/?#]*(?:[/?#]|$))/gi + + /** + * A pattern that matches safe data URLs. Only matches image, video and audio types. + * + * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts + */ + var DATA_URL_PATTERN = /^data:(?:image\/(?:bmp|gif|jpeg|jpg|png|tiff|webp)|video\/(?:mpeg|mp4|ogg|webm)|audio\/(?:mp3|oga|ogg|opus));base64,[a-z0-9+/]+=*$/i + + function allowedAttribute(attr, allowedAttributeList) { + var attrName = attr.nodeName.toLowerCase() + + if ($.inArray(attrName, allowedAttributeList) !== -1) { + if ($.inArray(attrName, uriAttrs) !== -1) { + return Boolean(attr.nodeValue.match(SAFE_URL_PATTERN) || attr.nodeValue.match(DATA_URL_PATTERN)) + } + + return true + } + + var regExp = $(allowedAttributeList).filter(function (index, value) { + return value instanceof RegExp + }) + + // Check if a regular expression validates the attribute. + for (var i = 0, l = regExp.length; i < l; i++) { + if (attrName.match(regExp[i])) { + return true + } + } + + return false + } + + function sanitizeHtml(unsafeHtml, whiteList, sanitizeFn) { + if (unsafeHtml.length === 0) { + return unsafeHtml + } + + if (sanitizeFn && typeof sanitizeFn === 'function') { + return sanitizeFn(unsafeHtml) + } + + // IE 8 and below don't support createHTMLDocument + if (!document.implementation || !document.implementation.createHTMLDocument) { + return unsafeHtml + } + + var createdDocument = document.implementation.createHTMLDocument('sanitization') + createdDocument.body.innerHTML = unsafeHtml + + var whitelistKeys = $.map(whiteList, function (el, i) { return i }) + var elements = $(createdDocument.body).find('*') + + for (var i = 0, len = elements.length; i < len; i++) { + var el = elements[i] + var elName = el.nodeName.toLowerCase() + + if ($.inArray(elName, whitelistKeys) === -1) { + el.parentNode.removeChild(el) + + continue + } + + var attributeList = $.map(el.attributes, function (el) { return el }) + var whitelistedAttributes = [].concat(whiteList['*'] || [], whiteList[elName] || []) + + for (var j = 0, len2 = attributeList.length; j < len2; j++) { + if (!allowedAttribute(attributeList[j], whitelistedAttributes)) { + el.removeAttribute(attributeList[j].nodeName) + } + } + } + + return createdDocument.body.innerHTML + } + + // TOOLTIP PUBLIC CLASS DEFINITION + // =============================== + + var Tooltip = function (element, options) { + this.type = null + this.options = null + this.enabled = null + this.timeout = null + this.hoverState = null + this.$element = null + this.inState = null + + this.init('tooltip', element, options) + } + + Tooltip.VERSION = '3.4.1' + + Tooltip.TRANSITION_DURATION = 150 + + Tooltip.DEFAULTS = { + animation: true, + placement: 'top', + selector: false, + template: '', + trigger: 'hover focus', + title: '', + delay: 0, + html: false, + container: false, + viewport: { + selector: 'body', + padding: 0 + }, + sanitize : true, + sanitizeFn : null, + whiteList : DefaultWhitelist + } + + Tooltip.prototype.init = function (type, element, options) { + this.enabled = true + this.type = type + this.$element = $(element) + this.options = this.getOptions(options) + this.$viewport = this.options.viewport && $(document).find($.isFunction(this.options.viewport) ? this.options.viewport.call(this, this.$element) : (this.options.viewport.selector || this.options.viewport)) + this.inState = { click: false, hover: false, focus: false } + + if (this.$element[0] instanceof document.constructor && !this.options.selector) { + throw new Error('`selector` option must be specified when initializing ' + this.type + ' on the window.document object!') + } + + var triggers = this.options.trigger.split(' ') + + for (var i = triggers.length; i--;) { + var trigger = triggers[i] + + if (trigger == 'click') { + this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) + } else if (trigger != 'manual') { + var eventIn = trigger == 'hover' ? 'mouseenter' : 'focusin' + var eventOut = trigger == 'hover' ? 'mouseleave' : 'focusout' + + this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) + this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) + } + } + + this.options.selector ? + (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) : + this.fixTitle() + } + + Tooltip.prototype.getDefaults = function () { + return Tooltip.DEFAULTS + } + + Tooltip.prototype.getOptions = function (options) { + var dataAttributes = this.$element.data() + + for (var dataAttr in dataAttributes) { + if (dataAttributes.hasOwnProperty(dataAttr) && $.inArray(dataAttr, DISALLOWED_ATTRIBUTES) !== -1) { + delete dataAttributes[dataAttr] + } + } + + options = $.extend({}, this.getDefaults(), dataAttributes, options) + + if (options.delay && typeof options.delay == 'number') { + options.delay = { + show: options.delay, + hide: options.delay + } + } + + if (options.sanitize) { + options.template = sanitizeHtml(options.template, options.whiteList, options.sanitizeFn) + } + + return options + } + + Tooltip.prototype.getDelegateOptions = function () { + var options = {} + var defaults = this.getDefaults() + + this._options && $.each(this._options, function (key, value) { + if (defaults[key] != value) options[key] = value + }) + + return options + } + + Tooltip.prototype.enter = function (obj) { + var self = obj instanceof this.constructor ? + obj : $(obj.currentTarget).data('bs.' + this.type) + + if (!self) { + self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) + $(obj.currentTarget).data('bs.' + this.type, self) + } + + if (obj instanceof $.Event) { + self.inState[obj.type == 'focusin' ? 'focus' : 'hover'] = true + } + + if (self.tip().hasClass('in') || self.hoverState == 'in') { + self.hoverState = 'in' + return + } + + clearTimeout(self.timeout) + + self.hoverState = 'in' + + if (!self.options.delay || !self.options.delay.show) return self.show() + + self.timeout = setTimeout(function () { + if (self.hoverState == 'in') self.show() + }, self.options.delay.show) + } + + Tooltip.prototype.isInStateTrue = function () { + for (var key in this.inState) { + if (this.inState[key]) return true + } + + return false + } + + Tooltip.prototype.leave = function (obj) { + var self = obj instanceof this.constructor ? + obj : $(obj.currentTarget).data('bs.' + this.type) + + if (!self) { + self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) + $(obj.currentTarget).data('bs.' + this.type, self) + } + + if (obj instanceof $.Event) { + self.inState[obj.type == 'focusout' ? 'focus' : 'hover'] = false + } + + if (self.isInStateTrue()) return + + clearTimeout(self.timeout) + + self.hoverState = 'out' + + if (!self.options.delay || !self.options.delay.hide) return self.hide() + + self.timeout = setTimeout(function () { + if (self.hoverState == 'out') self.hide() + }, self.options.delay.hide) + } + + Tooltip.prototype.show = function () { + var e = $.Event('show.bs.' + this.type) + + if (this.hasContent() && this.enabled) { + this.$element.trigger(e) + + var inDom = $.contains(this.$element[0].ownerDocument.documentElement, this.$element[0]) + if (e.isDefaultPrevented() || !inDom) return + var that = this + + var $tip = this.tip() + + var tipId = this.getUID(this.type) + + this.setContent() + $tip.attr('id', tipId) + this.$element.attr('aria-describedby', tipId) + + if (this.options.animation) $tip.addClass('fade') + + var placement = typeof this.options.placement == 'function' ? + this.options.placement.call(this, $tip[0], this.$element[0]) : + this.options.placement + + var autoToken = /\s?auto?\s?/i + var autoPlace = autoToken.test(placement) + if (autoPlace) placement = placement.replace(autoToken, '') || 'top' + + $tip + .detach() + .css({ top: 0, left: 0, display: 'block' }) + .addClass(placement) + .data('bs.' + this.type, this) + + this.options.container ? $tip.appendTo($(document).find(this.options.container)) : $tip.insertAfter(this.$element) + this.$element.trigger('inserted.bs.' + this.type) + + var pos = this.getPosition() + var actualWidth = $tip[0].offsetWidth + var actualHeight = $tip[0].offsetHeight + + if (autoPlace) { + var orgPlacement = placement + var viewportDim = this.getPosition(this.$viewport) + + placement = placement == 'bottom' && pos.bottom + actualHeight > viewportDim.bottom ? 'top' : + placement == 'top' && pos.top - actualHeight < viewportDim.top ? 'bottom' : + placement == 'right' && pos.right + actualWidth > viewportDim.width ? 'left' : + placement == 'left' && pos.left - actualWidth < viewportDim.left ? 'right' : + placement + + $tip + .removeClass(orgPlacement) + .addClass(placement) + } + + var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight) + + this.applyPlacement(calculatedOffset, placement) + + var complete = function () { + var prevHoverState = that.hoverState + that.$element.trigger('shown.bs.' + that.type) + that.hoverState = null + + if (prevHoverState == 'out') that.leave(that) + } + + $.support.transition && this.$tip.hasClass('fade') ? + $tip + .one('bsTransitionEnd', complete) + .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : + complete() + } + } + + Tooltip.prototype.applyPlacement = function (offset, placement) { + var $tip = this.tip() + var width = $tip[0].offsetWidth + var height = $tip[0].offsetHeight + + // manually read margins because getBoundingClientRect includes difference + var marginTop = parseInt($tip.css('margin-top'), 10) + var marginLeft = parseInt($tip.css('margin-left'), 10) + + // we must check for NaN for ie 8/9 + if (isNaN(marginTop)) marginTop = 0 + if (isNaN(marginLeft)) marginLeft = 0 + + offset.top += marginTop + offset.left += marginLeft + + // $.fn.offset doesn't round pixel values + // so we use setOffset directly with our own function B-0 + $.offset.setOffset($tip[0], $.extend({ + using: function (props) { + $tip.css({ + top: Math.round(props.top), + left: Math.round(props.left) + }) + } + }, offset), 0) + + $tip.addClass('in') + + // check to see if placing tip in new offset caused the tip to resize itself + var actualWidth = $tip[0].offsetWidth + var actualHeight = $tip[0].offsetHeight + + if (placement == 'top' && actualHeight != height) { + offset.top = offset.top + height - actualHeight + } + + var delta = this.getViewportAdjustedDelta(placement, offset, actualWidth, actualHeight) + + if (delta.left) offset.left += delta.left + else offset.top += delta.top + + var isVertical = /top|bottom/.test(placement) + var arrowDelta = isVertical ? delta.left * 2 - width + actualWidth : delta.top * 2 - height + actualHeight + var arrowOffsetPosition = isVertical ? 'offsetWidth' : 'offsetHeight' + + $tip.offset(offset) + this.replaceArrow(arrowDelta, $tip[0][arrowOffsetPosition], isVertical) + } + + Tooltip.prototype.replaceArrow = function (delta, dimension, isVertical) { + this.arrow() + .css(isVertical ? 'left' : 'top', 50 * (1 - delta / dimension) + '%') + .css(isVertical ? 'top' : 'left', '') + } + + Tooltip.prototype.setContent = function () { + var $tip = this.tip() + var title = this.getTitle() + + if (this.options.html) { + if (this.options.sanitize) { + title = sanitizeHtml(title, this.options.whiteList, this.options.sanitizeFn) + } + + $tip.find('.tooltip-inner').html(title) + } else { + $tip.find('.tooltip-inner').text(title) + } + + $tip.removeClass('fade in top bottom left right') + } + + Tooltip.prototype.hide = function (callback) { + var that = this + var $tip = $(this.$tip) + var e = $.Event('hide.bs.' + this.type) + + function complete() { + if (that.hoverState != 'in') $tip.detach() + if (that.$element) { // TODO: Check whether guarding this code with this `if` is really necessary. + that.$element + .removeAttr('aria-describedby') + .trigger('hidden.bs.' + that.type) + } + callback && callback() + } + + this.$element.trigger(e) + + if (e.isDefaultPrevented()) return + + $tip.removeClass('in') + + $.support.transition && $tip.hasClass('fade') ? + $tip + .one('bsTransitionEnd', complete) + .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : + complete() + + this.hoverState = null + + return this + } + + Tooltip.prototype.fixTitle = function () { + var $e = this.$element + if ($e.attr('title') || typeof $e.attr('data-original-title') != 'string') { + $e.attr('data-original-title', $e.attr('title') || '').attr('title', '') + } + } + + Tooltip.prototype.hasContent = function () { + return this.getTitle() + } + + Tooltip.prototype.getPosition = function ($element) { + $element = $element || this.$element + + var el = $element[0] + var isBody = el.tagName == 'BODY' + + var elRect = el.getBoundingClientRect() + if (elRect.width == null) { + // width and height are missing in IE8, so compute them manually; see https://github.com/twbs/bootstrap/issues/14093 + elRect = $.extend({}, elRect, { width: elRect.right - elRect.left, height: elRect.bottom - elRect.top }) + } + var isSvg = window.SVGElement && el instanceof window.SVGElement + // Avoid using $.offset() on SVGs since it gives incorrect results in jQuery 3. + // See https://github.com/twbs/bootstrap/issues/20280 + var elOffset = isBody ? { top: 0, left: 0 } : (isSvg ? null : $element.offset()) + var scroll = { scroll: isBody ? document.documentElement.scrollTop || document.body.scrollTop : $element.scrollTop() } + var outerDims = isBody ? { width: $(window).width(), height: $(window).height() } : null + + return $.extend({}, elRect, scroll, outerDims, elOffset) + } + + Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) { + return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } : + placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } : + placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } : + /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width } + + } + + Tooltip.prototype.getViewportAdjustedDelta = function (placement, pos, actualWidth, actualHeight) { + var delta = { top: 0, left: 0 } + if (!this.$viewport) return delta + + var viewportPadding = this.options.viewport && this.options.viewport.padding || 0 + var viewportDimensions = this.getPosition(this.$viewport) + + if (/right|left/.test(placement)) { + var topEdgeOffset = pos.top - viewportPadding - viewportDimensions.scroll + var bottomEdgeOffset = pos.top + viewportPadding - viewportDimensions.scroll + actualHeight + if (topEdgeOffset < viewportDimensions.top) { // top overflow + delta.top = viewportDimensions.top - topEdgeOffset + } else if (bottomEdgeOffset > viewportDimensions.top + viewportDimensions.height) { // bottom overflow + delta.top = viewportDimensions.top + viewportDimensions.height - bottomEdgeOffset + } + } else { + var leftEdgeOffset = pos.left - viewportPadding + var rightEdgeOffset = pos.left + viewportPadding + actualWidth + if (leftEdgeOffset < viewportDimensions.left) { // left overflow + delta.left = viewportDimensions.left - leftEdgeOffset + } else if (rightEdgeOffset > viewportDimensions.right) { // right overflow + delta.left = viewportDimensions.left + viewportDimensions.width - rightEdgeOffset + } + } + + return delta + } + + Tooltip.prototype.getTitle = function () { + var title + var $e = this.$element + var o = this.options + + title = $e.attr('data-original-title') + || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title) + + return title + } + + Tooltip.prototype.getUID = function (prefix) { + do prefix += ~~(Math.random() * 1000000) + while (document.getElementById(prefix)) + return prefix + } + + Tooltip.prototype.tip = function () { + if (!this.$tip) { + this.$tip = $(this.options.template) + if (this.$tip.length != 1) { + throw new Error(this.type + ' `template` option must consist of exactly 1 top-level element!') + } + } + return this.$tip + } + + Tooltip.prototype.arrow = function () { + return (this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow')) + } + + Tooltip.prototype.enable = function () { + this.enabled = true + } + + Tooltip.prototype.disable = function () { + this.enabled = false + } + + Tooltip.prototype.toggleEnabled = function () { + this.enabled = !this.enabled + } + + Tooltip.prototype.toggle = function (e) { + var self = this + if (e) { + self = $(e.currentTarget).data('bs.' + this.type) + if (!self) { + self = new this.constructor(e.currentTarget, this.getDelegateOptions()) + $(e.currentTarget).data('bs.' + this.type, self) + } + } + + if (e) { + self.inState.click = !self.inState.click + if (self.isInStateTrue()) self.enter(self) + else self.leave(self) + } else { + self.tip().hasClass('in') ? self.leave(self) : self.enter(self) + } + } + + Tooltip.prototype.destroy = function () { + var that = this + clearTimeout(this.timeout) + this.hide(function () { + that.$element.off('.' + that.type).removeData('bs.' + that.type) + if (that.$tip) { + that.$tip.detach() + } + that.$tip = null + that.$arrow = null + that.$viewport = null + that.$element = null + }) + } + + Tooltip.prototype.sanitizeHtml = function (unsafeHtml) { + return sanitizeHtml(unsafeHtml, this.options.whiteList, this.options.sanitizeFn) + } + + // TOOLTIP PLUGIN DEFINITION + // ========================= + + function Plugin(option) { + return this.each(function () { + var $this = $(this) + var data = $this.data('bs.tooltip') + var options = typeof option == 'object' && option + + if (!data && /destroy|hide/.test(option)) return + if (!data) $this.data('bs.tooltip', (data = new Tooltip(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + var old = $.fn.tooltip + + $.fn.tooltip = Plugin + $.fn.tooltip.Constructor = Tooltip + + + // TOOLTIP NO CONFLICT + // =================== + + $.fn.tooltip.noConflict = function () { + $.fn.tooltip = old + return this + } + +}(jQuery); + +/* ======================================================================== + * Bootstrap: popover.js v3.4.1 + * https://getbootstrap.com/docs/3.4/javascript/#popovers + * ======================================================================== + * Copyright 2011-2019 Twitter, Inc. + * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) + * ======================================================================== */ + + ++function ($) { + 'use strict'; + + // POPOVER PUBLIC CLASS DEFINITION + // =============================== + + var Popover = function (element, options) { + this.init('popover', element, options) + } + + if (!$.fn.tooltip) throw new Error('Popover requires tooltip.js') + + Popover.VERSION = '3.4.1' + + Popover.DEFAULTS = $.extend({}, $.fn.tooltip.Constructor.DEFAULTS, { + placement: 'right', + trigger: 'click', + content: '', + template: '' + }) + + + // NOTE: POPOVER EXTENDS tooltip.js + // ================================ + + Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype) + + Popover.prototype.constructor = Popover + + Popover.prototype.getDefaults = function () { + return Popover.DEFAULTS + } + + Popover.prototype.setContent = function () { + var $tip = this.tip() + var title = this.getTitle() + var content = this.getContent() + + if (this.options.html) { + var typeContent = typeof content + + if (this.options.sanitize) { + title = this.sanitizeHtml(title) + + if (typeContent === 'string') { + content = this.sanitizeHtml(content) + } + } + + $tip.find('.popover-title').html(title) + $tip.find('.popover-content').children().detach().end()[ + typeContent === 'string' ? 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    • diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 0b2ba17..932501a 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -3,6 +3,12 @@ /404.html + + /articles/a01_DRR_Background.html + + + /articles/a02_Using_DRR_Template.html + /articles/index.html diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd index e042a59..5a9dc62 100644 --- a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd @@ -347,7 +347,7 @@ data_criteria %>% # Generates a table summarizing QC at the column level within each file. All flagged columns are included. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". #set directory to the location of your data package: -path <- "../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" +path <- "/BICY_Example" dc_flags <- QCkit::get_custom_flags(directory = path, output="columns") dc_flags$`File Name` <- gsub(".csv", "", dc_flags$`File Name`) From c3c1d2bee53631b9eeb98e87c3194a9bc02bec63 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 14:54:05 -0700 Subject: [PATCH 07/33] add template file for datastore interactions unit testing --- tests/testthat/test-datastore_interactions.R | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 tests/testthat/test-datastore_interactions.R diff --git a/tests/testthat/test-datastore_interactions.R b/tests/testthat/test-datastore_interactions.R new file mode 100644 index 0000000..3254f00 --- /dev/null +++ b/tests/testthat/test-datastore_interactions.R @@ -0,0 +1,4 @@ +test_that("multiplication works", { + expect_equal(2 * 2, 4) +}) + From 85e01fbd859562e54c2e3463c7e0f56a5c291572 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 15:04:12 -0700 Subject: [PATCH 08/33] rename file structure to get path < 100 chars --- .../skeleton/BICY_Example/Example_BICY_Veg_metadata.xml | 0 .../skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv | 0 .../skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv | 0 .../skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv | 0 .../skeleton/national-park-service-DRR.csl | 0 .../skeleton/references.bib | 0 .../skeleton/skeleton.Rmd | 0 .../{nps-data-release-report-template => NPS DRR}/template.yaml | 2 +- 8 files changed, 1 insertion(+), 1 deletion(-) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/national-park-service-DRR.csl (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/references.bib (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/skeleton/skeleton.Rmd (100%) rename inst/rmarkdown/templates/{nps-data-release-report-template => NPS DRR}/template.yaml (62%) diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml b/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml rename to inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv b/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv rename to inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv b/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv rename to inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv b/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv rename to inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl b/inst/rmarkdown/templates/NPS DRR/skeleton/national-park-service-DRR.csl similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/national-park-service-DRR.csl rename to inst/rmarkdown/templates/NPS DRR/skeleton/national-park-service-DRR.csl diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib b/inst/rmarkdown/templates/NPS DRR/skeleton/references.bib similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/references.bib rename to inst/rmarkdown/templates/NPS DRR/skeleton/references.bib diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd similarity index 100% rename from inst/rmarkdown/templates/nps-data-release-report-template/skeleton/skeleton.Rmd rename to inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd diff --git a/inst/rmarkdown/templates/nps-data-release-report-template/template.yaml b/inst/rmarkdown/templates/NPS DRR/template.yaml similarity index 62% rename from inst/rmarkdown/templates/nps-data-release-report-template/template.yaml rename to inst/rmarkdown/templates/NPS DRR/template.yaml index ecf68e2..50db208 100644 --- a/inst/rmarkdown/templates/nps-data-release-report-template/template.yaml +++ b/inst/rmarkdown/templates/NPS DRR/template.yaml @@ -1,4 +1,4 @@ -name: NPS Data Release Report Template +name: NPS DRR description: > A description of the template create_dir: FALSE From 02cea683ea3547def8adee84650d51250f513a22 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 15:34:51 -0700 Subject: [PATCH 09/33] update file paths to example data files --- inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd index 5a9dc62..80f91a9 100644 --- a/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd @@ -347,8 +347,7 @@ data_criteria %>% # Generates a table summarizing QC at the column level within each file. All flagged columns are included. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". #set directory to the location of your data package: -path <- "/BICY_Example" -dc_flags <- QCkit::get_custom_flags(directory = path, output="columns") +dc_flags <- QCkit::get_custom_flags(here::here("Untitled", "BICY_Example"), output="columns") dc_flags$`File Name` <- gsub(".csv", "", dc_flags$`File Name`) @@ -378,8 +377,7 @@ kableExtra::add_footnote( # Generates a table summarizing data quality across all flagged columns of each data file. To add additional non-flagged columns, specify them with column names: cols=("my_unflagged_data1", "my_unflagged_data2)" or numbers: cols=c(1:4). All non-missing data in unflagged columns is assumed accepted. If a file has no flagged columns and no specified custom columns, all values for that data file will be listed as "NA". #set directory to the location of your data package -path<-"../../DataPackageWorkflow/dataPackages/BICY_Veg_Data_Package_Example" -dp_flags <- get_custom_flags(directory = path, output="files") +dp_flags <- get_custom_flags(directory = here::here("Untitled", "BICY_Example"), output="files") #generate table: dp_flags %>% From 44491566fcf5f1eb9001f406921f85fabc502508 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 15:35:07 -0700 Subject: [PATCH 10/33] add .pngs for example DRR --- .../skeleton/BICY_Example/FileStructure.PNG | Bin 0 -> 2965 bytes .../skeleton/BICY_Example/PracticalExample.png | Bin 0 -> 40135 bytes .../BICY_Example/ProcessingWorkflow.png | Bin 0 -> 10844 bytes .../BICY_Example/WorkflowModelGeneral.png | Bin 0 -> 15023 bytes .../BICY_Example/WorkflowModelInventories.png | Bin 0 -> 26785 bytes .../BICY_Example/WorkflowModelMonitoring.png | 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z!AceNu528|8GEp>u3ZZ?sTc27O+_)I4+Sewgt#<2?GztRz;(xmm3Hs%IL%6bG#YW)Rt9k^fSKbU{M zu2V7dNmo2L1nM(ztGt*4b|4Xn_fS++dGGz?q`QdpE*qDC*9Awsj7LRv1pe^)RtUFh&@D&D`8q8q907`{UBkRSfb=9x4o((o zz{G`j|Jsvw-_1oE9mT#p7gXVT@n|IOT4hL z+68(tiqUpl?=Q8GH#tZr8B%&{l0Hnl_F=1Yj5q35Wf|;f#xI_0BTolk@{+|VYfj8b zBTDb^pZ^MMET|mtxZya}Mc{;he*VvG>-&#O0KDse;|2Qv?a{e30?YPsdiv2;@DaJA zS1;YWq3Uu5TIAj`M}SGhyCyKqpqA9N%wFCD2BJ0ziR|rs10G`XiyQplcX$J#6u6pN zt~99c!GD9F*-HhiJHfgCV#xx2_kX9Ldb7B_H^YkTnJG?m7&?yI(uz_j2?L-10V^5d AF#rGn From a6ea8ebdf28185e5c5bdeafdbc6ca5d4d7c33441 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 8 Feb 2024 15:51:14 -0700 Subject: [PATCH 12/33] add here package; update paths to .pngs --- inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd index 80f91a9..7c71940 100644 --- a/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd @@ -101,7 +101,8 @@ RRpackages <- c("markdown", "yaml", "kableExtra", "devtools", - "tidyverse") + "tidyverse", + "here") inst <- RRpackages %in% installed.packages() if (length(RRpackages[!inst]) > 0) { @@ -432,7 +433,9 @@ Specific data inputs and outputs should be explicitly cited in the text and incl Authors are encouraged to consider creating a figure that outlines the experimental workflow(s) used to generate and analyse the data output(s) (Figure 1). ```{r figure1, echo=FALSE, fig.cap="Example general workflow to include in the methods section."} -include_graphics("vignettes/common/ProcessingWorkflow.png") +knitr::include_graphics(here::here("Untitled", + "BICY_Example", + "ProcessingWorkflow.png")) ``` ## Data Collection and Sample Processing Methods (optional) From 4882ccd91f00fa77d68e2615435b2b8feba65b22 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 08:09:57 -0700 Subject: [PATCH 13/33] Add files for DRR template instructions --- vignettes/articles/Starting-a-DRR.Rmd | 80 +++ vignettes/articles/Using-the-DRR-Template.Rmd | 482 ++++++++++++++++++ vignettes/articles/new_rmd.png | Bin 0 -> 21503 bytes vignettes/articles/new_rmd_template.png | Bin 0 -> 36569 bytes 4 files changed, 562 insertions(+) create mode 100644 vignettes/articles/Starting-a-DRR.Rmd create mode 100644 vignettes/articles/Using-the-DRR-Template.Rmd create mode 100644 vignettes/articles/new_rmd.png create mode 100644 vignettes/articles/new_rmd_template.png diff --git a/vignettes/articles/Starting-a-DRR.Rmd b/vignettes/articles/Starting-a-DRR.Rmd new file mode 100644 index 0000000..1d364d3 --- /dev/null +++ b/vignettes/articles/Starting-a-DRR.Rmd @@ -0,0 +1,80 @@ +--- +title: "Starting a DRR" +--- + +```{r setup, include=FALSE} +knitr::opts_chunk$set(echo = FALSE) + +# Learn more about creating websites with Distill at: +# https://rstudio.github.io/distill/website.html + +``` + + + +[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) + + + +# DRRs: Background + +[Purpose and Scope of Data Release Reports](PurposeAndScope.html) + +This is a template is for use when drafting Data Release Reports. DRRs are created by the National Park Service and provide detailed descriptions of valuable research datasets, including the methods used to collect the data and technical analyses supporting the quality of the measurements. Data Release Reports focus on helping others reuse data rather than presenting results, testing hypotheses, or presenting new interpretations and in-depth analyses. + +# About this Template + +This template contains an rmarkdown template file, default folder structure for project files, and all the necessary template files to generate an unformatted .docx file. Upon submission for publication, the .docx file will be ingested by EXstyles, converted to an .xml file and fully formatted according to NPS branding upon final publication. The goal of this process is to relieve data producers, managers, and scientists from the burden of formatting and allow them to focus primarily on content. Consequently, the .docx generated for the publication process may not be visually appealing. The content, however, should focus on quality control, of NPS data packages and evaluate their of utility. + +# How to Start a DRR + +1. **To start your DRR you will need all of your data in flat .csv files**. All quality assurance, quality control, and quality flagging should be completed. Ideally you have already created or are in the process of creating a data package. All of the .csv files you want to describe in the DRR should be in a single folder with **no additional .csv files** (other files such as .txt and .xml will be ignored). This folder can be the same folder you used/are using to create a data package. + +2. **Using Rstudio, open an R project** (Select File \> New Project...) in the same folder as your .csv files. If you already have an R project (.Rproj) initiated from creating a data package, you can use that same R project. + +3. **Install, update (if necessary), and load the QCkit R package**. QCkit can be installed either as a component of the [NPSdataverse](https://nationalparkservice.github.io/NPSdataverse/) or on its own. The benefits of installing the entire NPSdataverse is that upon loading the NPSdataverse, you will automatically be informed if there are any updates to QCkit (or any of the constituent packages). The downside to installing and loading the NPSdataverse is that the first time you install it the process can be lengthy (there are many dependencies) and you may hit the GitHub.com API rate limit. Either installation is from GitHub.com and requires the devtools package to install. + +```{r install_devtools, eval = FALSE} +# Install the devtools package, if you don't already have it: +install.pacakges("devtools") +``` + +```{r install_NPSdataverse, eval = FALSE} +# Install and load QCkit via NPSdataverse: +devtools::install_github("nationalparkservice/NPSdataverse") +library(NPSdataverse) +``` + +```{r install_QCkit, eval = FALSE} +# Install and load just QCkit: +devtools::install_github("nationalparkservice/QCkit") +library(QCkit) +``` + +4. **Open a new DRR Template**. From within Rstudio, select the "File" drop down menu. Choose "New File" and then "R markdown...". This will open up a pop-up dialog box. Select "From Template" on in the right-hand list and choose the template labelled "NPS DRR {QCkit}". You can change the file and folder name to something other than "Untitled", but if you do so the example DRR will not render properly. Click OK. A new folder will be generated in your current working directory titled, "Untitled" (or whatever name you have opted to call it). + +```{r echo = FALSE, out.width = "40%", out.height = "20%", fig.caption = "Opening a new DRR Template"} +knitr::include_graphics(c("new_rmd.png", "new_rmd_template.png")) +``` + +5. + +6. [How to Use this Template](HowToUseThisTemplate.html) line-by-line instructions and descriptions for how to use the DRR Template. + +7. [The DRR_Template](https://github.com/nationalparkservice/DRR_Template/blob/master/DRR_to_docx.Rmd) the file you make changes to to generate a DRR. Note: this is not a stand-alone file. To create a DRR please download the [zipped template](https://github.com/nationalparkservice/DRR_Template/zipball/master) with all associated files and folders. + +8. [Bibtex reference file](https://github.com/nationalparkservice/DRR_Template/raw/master/reference.bib) is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text citations to the DRR Template and your References section will automatically be generated for you when you knit the .Rmd to .docx. You should still visually check the final format in the .docx file for accuracy, completion, and formatting. If you would prefer to manually format your citations, feel free to continue doing so. + +9. [DRR_Report](https://github.com/nationalparkservice/DRR_Template/raw/master/DRR_to_docx.docx) an example of the .docx output file that takes into account your edits and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the .Rmd to .docx format in Rstudio). + +# Examples + +More will be provided as they are published. The following examples are post-formatting and should be used as examples for content generation only. + +1. [DRR for tabular (csv) datasets](DRAFT_2019_Report_NationalMeanDailyFlowsDataSummary.html) of hydrologic data used for calculating hydrologic metrics as a part of the national Environmental Settings monitoring protocol. + +2. [DRR for geospatial (file geodatabase) data](NPS-NRSS-DRR-2020-1.html) continuing custom areas of analysis used for Environmental Settings monitoring protocol. Report created in Microsoft Word and ported to the template. + +# Tips, FAQs, and Errata + +(coming soon) diff --git a/vignettes/articles/Using-the-DRR-Template.Rmd b/vignettes/articles/Using-the-DRR-Template.Rmd new file mode 100644 index 0000000..da82a7c --- /dev/null +++ b/vignettes/articles/Using-the-DRR-Template.Rmd @@ -0,0 +1,482 @@ +--- +title: "Using the DRR Template" +--- + +--- +title: "Using the DRR Template" +output: rmarkdown::html_vignette +vignette: > + %\VignetteIndexEntry{Using the DRR Template} + %\VignetteEnging{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r setup, include=FALSE} +RRpackages <- c('markdown', # links to Sundown rendering library + 'rmarkdown', # newer rendering via pandoc + 'pander', # alternative renderer for markdown, + # plus better tables than just knitr + 'knitr', + "devtools", + "R.rsp", # dynamic generation of scientific reports + "rmdHelpers", # misc from Mark Peterson + # thisFileName() thisFile_knit() + 'yaml', # format data into markdown + 'kableExtra', + 'rmdformats', # templates including automatic ToC, + # also use_bookdown() + 'htmltools' # + ) + +inst <- RRpackages %in% installed.packages() +if (length(RRpackages[!inst]) > 0) { + install.packages(RRpackages[!inst], repos = "http://cran.us.r-project.org", dep = TRUE) +} +lapply(RRpackages, library, character.only = TRUE) + +knitr::opts_chunk$set( + echo = TRUE, + comment = " ", + dev = "svg", + tidy.opts = list(width.cutoff = 60), + tidy = TRUE + ) + +``` + +# Overview + +Data Release Reports (DRRs) are created by the National Park Service and +provide detailed descriptions of valuable research datasets, including +the methods used to collect the data and technical analyses supporting +the quality of the measurements. Data Release Reports focus on helping +others reuse data, rather than presenting results, testing hypotheses, +or presenting new interpretations, methods or in-depth analyses. + +DRRs are intended to document the processing of fully-QAed data to their +final (QCed) form in a reproducible and transparent manner. DRRs +document the data collection methods and quality standards used to +prepare and review data prior to release. DRRs present the quality of +resultant data in the context of fitness for their intended use. + +Each DRR cites source and resultant datasets that are published +concurrently and cross-referenced. Associated datasets are made publicly +available with the exception of data that must be protected from release +as per NPS and park-specific policies. + +Data packages that are published concurrently with DRRs are intended to +be independently citable scientific works that can serve as the basis +for subsequent analysis and reporting by NPS or third parties. + +# Project Set-up + +The Template is not a stand-alone file but instead has multiple +associated and dependent files. New projects can be established using by +downloading the Zip file associated with the latest +[release](https://github.com/nationalparkservice/DRR_Template/releases) +of the DRR template repository on GitHub. + +## Folder Structure + +General directory contents are as follows (Figure 1): + +```{r fig1, echo=FALSE, out.width="30%", fig.align="center", fig.cap="Standard project directory structure for Data Release Reports"} +#knitr::include_graphics("FileStructure.PNG") +``` + +- `input` This is the only location (other than the template script + itself) where you you should manually change or edit files. This is + where data files you need to supply should be placed. + + - `figures` If you have figures that are not generated as part of + running this template, place those files here. + +- `output` Do not edit these files. This is where you can find your + final products. Edits to files in this folder will not be + incorporated when you knit the DRR_to_docx.rmd file. Any edits you + make to files in this directory may be overwritten when you knit the + template. + +- `temp` Do not edit these files. These are files that are either used + or generated during when you knit the DRR_to_docx.rmd template. They + may include graphics, text, or data. + +- You can safely ignore most of the other folders (including `docs`, + `my-website`, `vignettes`,`.github`) and files (including + `_config.yml`, `.gitignore`, `.Rhistory`, `index.html`, and + `national-park-service-DRR.csl`). + +# Reproducible Reports + +The following is for users who are using the `DRR_to_docx.rmd` template +file to generate a data release report using RMarkdown. + +## Standard Code Chunks + +In addition to the report outline and a description of content for each +section, the template includes four standard code chunks. + +**YAML Header:** + +The YAML header helps format the DRR. You should not need to edit any of +the YAML header. + +**R code chunks:** + +- `user_edited_parameters`. A series of parameters that are used in + the creation of the DRR and may be re-used in metadata and + associated data package construction. You will need to edit these + parameters for each DRR. + + - `title`. The title of the Data Release Report. + - `reportNumber`. This is optional, and should *only* be included + if publishing in the semi-official DRR series. Set to NULL if + there is no reportNumber. + - `DRR_DSRefID`. This is the DataStore reference ID for the + report. + - `authorNames`. A list of the author's names. + - `authorAffiliations`. A list of the author's affiliations. The + order of author affiliations must match the order of the authors + in the `authorNames` list. Note that the entirety of each + affiliation is enclosed in a single set of quotations. Line + breaks are indicated with the
      tag. Do not worry about + indentation or word wrapping. If two authors have the same + affiliation, list the affiliation twice. + - `authorORCID`. A list of ORCID iDs for each author in the format + "xxxx-xxxx-xxxx-xxxx". If an author does not have an ORCID iD, + specify NA (no quotes). The order of ORCID iDs (and NAs) must + correspond to the order of authors in the `authorNames` list. + Future iterations of the DRR Template will pull ORCID iDs from + metadata and eventually from Active Directory. See + [ORCID](https://www.orcid.org/) for more information about ORCID + iDs or to register an ORCID iD. + - `DRRabstract`. The abstract for the DRR (which may be distinct + from the data package abstract). Pay careful attention to + non-standard characters, line breaks, carriage returns, and + curly-quotes. You may find it useful to write the abstract in + NotePad or some other text editor and NOT a word processor (such + as Microsoft Word). Indicate line breaks with \n and a space + between paragraphs - should you want them - using \n\n. The + Abstract should succinctly describe the study, the assay(s) + performed, the resulting data, and their reuse potential, but + should not make any claims regarding new scientific findings. No + references are allowed in this section. A good suggested length + for abstracts is less than 250 words. + - `dataPackageRefID`. DataStore reference ID for the data package + associated with this report. You must have at least one data + package. Eventually, we will automate importing much of this + information from metadata and include the ability to describe + multiple data packages in a single DRR. + - `dataPackageTitle`. The title of the data package. Must match + the title on DataStore (and metadata). + - `dataPackageDescription`. A short title/subtitle or short + description for the data package. Must match the data package + metadata. + - `dataPackageDOI`. Auto-generated, no need to edit or update. + This is the data package DOI. It is based on the DataStore + reference number. + - `dataPackage_fileNames`. List the file names in your data + package. Do NOT include metadata files. For example, include + "my_data.csv" but do NOT include "my_metadata.xml". + - `dataPackage_fileSizes`. List the approximate size of each data + file. Make sure the order of the file sizes corresponds to the + order of file names in `dataPackage_fileNames`. + `dataPackage_fileDescript`. A short description of the + corresponding data file that helps distinguish it from other + data files. A good guideline is 10 words or less. This will be + used in a table summary table so brevity is a priority. If you + have already created metadata for your data package in EML + format, this should be the same text as found in the + "entityDescription" element for each data file. + +- `setup`. Most users will not need to edit this code chunk. There is + one code snippet for loading packages; the `RRpackages` section is a + suite of packages that are used to assist with reproducible + reporting. You may not need these for your report, but we have + included them as part of the base recommended packages. If you plan + to perform you QC as part of the DRR construction process, you can + add a second code snipped to import necessary packages for your QC + process here. + +- `title_do_not_edit`. These parameters are auto-generated based on + either the EML you supplied (when that becomes an option) or the + information you've already supplied under "user-edited-parameters". + You really should not need to edit these parameters. + +- `authors_do_not_edit`. There is no need to edit this chunk. This + writes the author names, ORCID iDs, and affiliations to the .docx + document based on information supplied in user-edited-parameters. + +- `LoadData`. Any datasets you need to load can go here. For most + people these datasets are used to generate summary statistics on + proportions of data that were flagged as accepted (A) accepted, + estimated (AE) and rejected (R) during the quality control process. + +- `FileTable`. Do not edit. Generates a table of file names, sizes, + and descriptions in the data package being described by the DRR. + +- `dataFlaggingTable`. This sample code provides a summary table + defining the suggested data flagging codes. There is no need to edit + this table. + +- `Listing`. Appendix A, by default is the code listing. This will + generate all code used in generating the report and data packages. + In most cases, code listing is not required. If all QA/QC processes + and data manipulations were performed elsewhere, you should cite + that code (in the methods and references) and leave the "listing + code chunk with the default settings of eval=FALSE and echo=FALSE. + If you have developed custom scripts, you can add those to DataStore + with the reference "Script" and cite them in the DRR. + +- `session-info` is the information about the versions of R and + packages used in generating the report. In most cases, you do not + need to report session info (leave the session-info code chunk + parameters in their default state: eval=FALSE). Session and version + information is only necessary if you have set the "Listing" code + chunk in appendix A to eval=TRUE. In that case, change the "session + info" code chunk parameters to eval=TRUE. + +## Citations + +### Automating Citations + +To automate citations, add the citation in bibtex format to the file +"references.bib". You can manually copy and paste the bibtex for each +reference in, or you can search for it from within Rstudio. From within +Rstudio, make sure you are editing this document using the "Visual" view +(as opposed to "Source"). From the "Insert" drop-down menu, select "\@ +Citation..." (shortcut: Cntrl-Shift-F8). This will open a Graphical User +Interface (GUI) tool where you can view all the citations in your +reference.bib file as well as search multiple databases for references, +automatically insert the bibtex for the reference into your +references.bib file (and customize the unique identifier if you'd like) +and insert the in-text citation into the DRR template. + +```{r fig2, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Source vs. Visual editing of the Template and how to access the citation manager."} +#knitr::include_graphics("RMD_vis_source.png") +``` + +```{r fig3, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Using the citation manager."} +#knitr::include_graphics("R_citation_manager.png") +``` + +Once a reference is in your references.bib file, using the Visual view +of the template you can simply type the '\@' symbol and select which +reference to insert in the text. + +If you need to edit how the citation is displayed after inserting it +into the text, switch back to the "Source" view. Each bibtex citation +should start with a unique identifier; the example reference in the +supplied references.bib file has the unique identifier +"@article{Scott1994,". Using the "Source" view in Rstudio, insert the +reference in your text, by combining the "at" symbol with the portion of +the unique identifier after the curly bracket: @Scott1994 . + +| Syntax | Result | +|------------------------------------|-----------------------------------| +| `@Scott1994` concludes that ... | Scott et al., 1994 concludes that ... | +| `@Scott1994[p.33]` concludes that ... | Scott (1994, p.33) concludes that ... | +| ... end of sentence `[@Scott1994]`. | ... end of sentence (Scott et al., 1994). | +| ... end of sentence `[see @Scott1994,p.33]`. | ... end of sentence (see Scott et al. 1994,p.33). | +| delineate multiple authors with colon: `[@Scott1994; @aberdeen1958]` | delineate multiple authors with colon: (Scott et al., 1994; Aberdeen, 1958) | +| Scott et al. conclude that .... [-@Scott1994] | Scott et al. conclude that . . . (1994) | + + +The full citation, properly formatted, will be included in a "References" section at the end of the rendered MS Word document. . . though it is also worth visually +inspecting the .docx for citation completeness and formatting. + +### Manual citations + +If you would like to format your citations manually, please feel free to +do so. Make sure to look at the References section for how to +properly format each citation type. + +# Editing the Text + +The following text in the body of the DRR template will need to be +edited to customize it to each data package. + +### Data Records + +This is a required section and consists of two subheadings: + +- **Data inputs** - an optional subsection used to describe datasets + that the data package is based on if it is a re-analysis, + reorganization, or re-integration of prevously existing data sets. + +- **Summary of datasts created** - this is a required section used to + explain each data record associated with the work (for instance, a + data package), including the DOI indicating where this information + is stored. It shoudl also provide an overview of the data files and + their formats. Each external data record should be cited. + +Sample text is included that uses r code to incorporate previously +specified parameters such as the data package title, file names, and +DOI. + +A code for a sample table summarizing the contents of the data package +(except the metadata) is provided. + +### Data Quality + +This is a required section. and the text includes multiple suggested +text elements and code for an example table defining data flagging +codes. Near future development here will incorporate additional optional +tables to summarize the data quality based on the flags in the data +sets. + +### Usage Notes + +This is a required section that should contain brief instructions to +assist other researchers with reuse of the data. This may include +discussion of software packages (with appropriate citations) that are +suitable for analysing the assay data files, suggested downstream +processing steps (e.g. normalization, etc.), or tips for integrating or +comparing the data records with other datasets. Authors are encouraged +to provide code, programs or data-processing workflows if they may help +others understand or use the data. + +### Methods + +This is a required section that cites previous methods used but should +also be detailed enough in describing data production including the +experimental design, data acquisition assays, and any computational +processing (e.g. normalization, QA, QC) such that others can understand +the methods without referring to associated publications. + +Optional sub-sections within the methods include: + +- **Data Collection and Sampling** +- **Additional Data Sources** +- **Data Processing** +- **Code availability** + +### References + +This required section includes full bibliographic references for each +paper, chapter, book, data package, dataset, protocol, etc cited within +the DRR. + +There are numerous examples of proper formatting for each of these. +Future versions of the DRR will enable automatic reference formatting +given a correctly formatted bibtex file with the references (.bib). + +## Figures + +Figures should be inserted using code chunks in all cases so that figure +settings can be set in the chunk header. The chunk header should at a +minimum set the fig.align parameter to “center” and the specify the +figure caption (fig.cap parameter). Inserting figures this way will +ensure that the caption is properly formatted and it will apply copy the +caption to the figure’s “alt text” tag, making it 508-compliant. + +For example: + +```` markdown +`r ''````{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} +knitr::include_graphics("ProcessingWorkflow.png") +``` +```` + +Results in: + +```{r fig4, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} +#knitr::include_graphics("ProcessingWorkflow.png") +``` + +## Tables + +Tables should be created using the kable function. Specifying the +caption in the kable function call (as opposed to inline markdown text) +will ensure that the caption is appropriately formatted. + +For example: + +```` markdown +`r ''````{r Table2, echo=FALSE} +c1<-c("Protocol1","Protocol2","Protocol3") +c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") +c3<-c("Site 1","Site 2","Site 3") +c4<-c("Date 1","Date 2","Date 3") +c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") +Table2<-data.frame(c1,c2,c3,c4,c5) + +kable(Table2, + col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), + caption="**Table 1.** Monitoring study example Data Records table.") %>% + kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) +``` +```` + +Results in: + +```{r Table2, echo=FALSE} +c1<-c("Protocol1","Protocol2","Protocol3") +c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") +c3<-c("Site 1","Site 2","Site 3") +c4<-c("Date 1","Date 2","Date 3") +c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") +Table2<-data.frame(c1,c2,c3,c4,c5) + +kable(Table2, + col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), + caption="**Table 1.** Monitoring study example Data Records table.") %>% + kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) +``` + +# Publishing DRRs + +## Report Numbers + +Because data release reports and associated data packages are +cross-referential, report numbers are typically assigned early in data +processing and quality evaluation. + +- **DataStore Reference Numbers.** When developing a report and data + packages, DataStore references should be created as early in the + process as practicable. While the report and data packages are in + development, these should not be activated. + +- **Report Numbers.** If you are planning to publish a Data Release + Report with an official DRR number, please contact the IMD Deputy + Chief with the DataStore reference number associated with the DRR. + +- **Persistent Identifiers.** Digital object identifiers (DOIs) will + be assigned to all DRRs and concurrently published data packages. + DOIs will resolve to a DataStore Reference; DOIs are reserved when a + draft reference is initiated in DataStore. They are not activated + until the publication process, including relevant review, is + complete. + +DRR DOIs have the format: + +Data package DOIs have the format: + +Where the "xxxxxx" is the 7-digit DataStore reference number. + +## Liability Statements + +Under no circumstances should reports and associated data packages or +metadata published in the DRR series contain disclaimers or text that +suggests that the work does not meet scientific integrity or information +quality standards of the National Park Service. The following +disclaimers are suitable for use, depending on whether the data are +provisional or final (or approved or certified). + +> **For approved & published data sets:** "Unless otherwise stated, all +> data, metadata and related materials are considered to satisfy the +> quality standards relative to the purpose for which the data were +> collected. Although these data and associated metadata have been +> reviewed for accuracy and completeness and approved for release by the +> National Park Service Inventory and Monitoring Division, no warranty +> expressed or implied is made regarding the display or utility of the +> data for other purposes, nor on all computer systems, nor shall the +> act of distribution constitute any such warranty." + +> **For provisional data:** "The data you have secured from the National +> Park Service (NPS) database identified as [database name] have not +> received approval for release by the NPS Inventory and Monitoring +> Division, and as such are provisional and subject to revision. 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z-gSD%*cakiuTwaoGDFMVMZaG!;Yt)i_})uc1~>PhduUU-tl;ZKI&lRqiH8@zu3W`2*Lg3L162`#6)%@1YpBP^;+Yi#i{+Urj z7Q6dpyn=WyZN9#rqn^EM&Uw-r6I%kWlKubMhkJ*sCv?m@*Qq{7A-?8gtK8yehdyUN zGWixG7;JDzbqYIQ)q8j6xQy+LF7veucGjIa$noKk?C($BU#0DSe}6yya6A9%>gxikT4w}w$gU9az=^P+|9%FLZ&`U?LS1_U3N zEuCLf!>zFBnV_#j*7tW(e^bW_`ItHG|}&+d$Ent2o*G3JRq~Gmc0ry@|34F!^R_Ag~mo$XkhNQm_)U`=;sr slY~LWm_`M+Oh`FsaAg}Xu{r#+H{P+ex@7hfDFz_$boFyt=akR{09uM$<^TWy literal 0 HcmV?d00001 From be3ce386356127695d614fb86ca4eead99f42d3c Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 08:10:11 -0700 Subject: [PATCH 14/33] remove vignettes; convert to articles --- vignettes/a01_DRR_Background.Rmd | 53 --- vignettes/a02_Using_DRR_Template.Rmd | 478 --------------------------- 2 files changed, 531 deletions(-) delete mode 100644 vignettes/a01_DRR_Background.Rmd delete mode 100644 vignettes/a02_Using_DRR_Template.Rmd diff --git a/vignettes/a01_DRR_Background.Rmd b/vignettes/a01_DRR_Background.Rmd deleted file mode 100644 index d65b993..0000000 --- a/vignettes/a01_DRR_Background.Rmd +++ /dev/null @@ -1,53 +0,0 @@ ---- -title: "Getting Started with NPS DRRs" -output: rmarkdown::html_vignette -vignette: > - %\VignetteIndexEntry{Getting Started with NPS DRRs} - %\VignetteEnging{knitr::rmarkdown} - %\VignetteEncoding{UTF-8} ---- - -```{r setup, include=FALSE} -knitr::opts_chunk$set(echo = FALSE) - -# Learn more about creating websites with Distill at: -# https://rstudio.github.io/distill/website.html - -``` - -[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) - - - -# DRRs: Background - -[Purpose and Scope of Data Release Reports](PurposeAndScope.html) - -This is a template is for use when drafting Data Release Reports. DRRs are created by the National Park Service and provide detailed descriptions of valuable research datasets, including the methods used to collect the data and technical analyses supporting the quality of the measurements. Data Release Reports focus on helping others reuse data rather than presenting results, testing hypotheses, or presenting new interpretations and in-depth analyses. - -# About this Template -This template contains an rmarkdown template file, default folder structure for project files, and all the necessary template files to generate an unformatted .docx file. Upon submission for publication, the .docx file will be ingested by EXstyles, converted to an .xml file and fully formatted according to NPS branding upon final publication. The goal of this process is to relieve data producers, managers, and scientists from the burden of formatting and allow them to focus primarily on content. Consequently, the .docx generated for the publication process may not be visually appealing. The content, however, should focus on quality control, of NPS data packages and evaluate their of utility. - -# How to Start a DRR - -New projects can be established using this template by downloading a zip file of the template and associated files and folders from: [This Link](https://github.com/nationalparkservice/DRR_Template/zipball/master) - -1. [How to Use this Template](HowToUseThisTemplate.html) line-by-line instructions and descriptions for how to use the DRR Template. - -2. [The DRR_Template](https://github.com/nationalparkservice/DRR_Template/blob/master/DRR_to_docx.Rmd) the file you make changes to to generate a DRR. Note: this is not a stand-alone file. To create a DRR please download the [zipped template](https://github.com/nationalparkservice/DRR_Template/zipball/master) with all associated files and folders. - -3. [Bibtex reference file](https://github.com/nationalparkservice/DRR_Template/raw/master/reference.bib) is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text citations to the DRR Template and your References section will automatically be generated for you when you knit the .Rmd to .docx. You should still visually check the final format in the .docx file for accuracy, completion, and formatting. If you would prefer to manually format your citations, feel free to continue doing so. - -4. [DRR_Report](https://github.com/nationalparkservice/DRR_Template/raw/master/DRR_to_docx.docx) an example of the .docx output file that takes into account your edits and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the .Rmd to .docx format in Rstudio). - -# Examples -More will be provided as they are published. The following examples are post-formatting and should be used as examples for content generation only. - -1. [DRR for tabular (csv) datasets](DRAFT_2019_Report_NationalMeanDailyFlowsDataSummary.html) of hydrologic data used for calculating hydrologic metrics as a part of the national Environmental Settings monitoring protocol. - -2. [DRR for geospatial (file geodatabase) data](NPS-NRSS-DRR-2020-1.html) continuing custom areas of analysis used for Environmental Settings monitoring protocol. Report created in Microsoft Word and ported to the template. - -# Tips, FAQs, and Errata -(coming soon) - - diff --git a/vignettes/a02_Using_DRR_Template.Rmd b/vignettes/a02_Using_DRR_Template.Rmd deleted file mode 100644 index af08982..0000000 --- a/vignettes/a02_Using_DRR_Template.Rmd +++ /dev/null @@ -1,478 +0,0 @@ ---- -title: "Using the DRR Template" -output: rmarkdown::html_vignette -vignette: > - %\VignetteIndexEntry{Using the DRR Template} - %\VignetteEnging{knitr::rmarkdown} - %\VignetteEncoding{UTF-8} ---- - -```{r setup, include=FALSE} -RRpackages <- c('markdown', # links to Sundown rendering library - 'rmarkdown', # newer rendering via pandoc - 'pander', # alternative renderer for markdown, - # plus better tables than just knitr - 'knitr', - "devtools", - "R.rsp", # dynamic generation of scientific reports - "rmdHelpers", # misc from Mark Peterson - # thisFileName() thisFile_knit() - 'yaml', # format data into markdown - 'kableExtra', - 'rmdformats', # templates including automatic ToC, - # also use_bookdown() - 'htmltools' # - ) - -inst <- RRpackages %in% installed.packages() -if (length(RRpackages[!inst]) > 0) { - install.packages(RRpackages[!inst], repos = "http://cran.us.r-project.org", dep = TRUE) -} -lapply(RRpackages, library, character.only = TRUE) - -knitr::opts_chunk$set( - echo = TRUE, - comment = " ", - dev = "svg", - tidy.opts = list(width.cutoff = 60), - tidy = TRUE - ) - -``` - -# Overview - -Data Release Reports (DRRs) are created by the National Park Service and -provide detailed descriptions of valuable research datasets, including -the methods used to collect the data and technical analyses supporting -the quality of the measurements. Data Release Reports focus on helping -others reuse data, rather than presenting results, testing hypotheses, -or presenting new interpretations, methods or in-depth analyses. - -DRRs are intended to document the processing of fully-QAed data to their -final (QCed) form in a reproducible and transparent manner. DRRs -document the data collection methods and quality standards used to -prepare and review data prior to release. DRRs present the quality of -resultant data in the context of fitness for their intended use. - -Each DRR cites source and resultant datasets that are published -concurrently and cross-referenced. Associated datasets are made publicly -available with the exception of data that must be protected from release -as per NPS and park-specific policies. - -Data packages that are published concurrently with DRRs are intended to -be independently citable scientific works that can serve as the basis -for subsequent analysis and reporting by NPS or third parties. - -# Project Set-up - -The Template is not a stand-alone file but instead has multiple -associated and dependent files. New projects can be established using by -downloading the Zip file associated with the latest -[release](https://github.com/nationalparkservice/DRR_Template/releases) -of the DRR template repository on GitHub. - -## Folder Structure - -General directory contents are as follows (Figure 1): - -```{r fig1, echo=FALSE, out.width="30%", fig.align="center", fig.cap="Standard project directory structure for Data Release Reports"} -#knitr::include_graphics("FileStructure.PNG") -``` - -- `input` This is the only location (other than the template script - itself) where you you should manually change or edit files. This is - where data files you need to supply should be placed. - - - `figures` If you have figures that are not generated as part of - running this template, place those files here. - -- `output` Do not edit these files. This is where you can find your - final products. Edits to files in this folder will not be - incorporated when you knit the DRR_to_docx.rmd file. Any edits you - make to files in this directory may be overwritten when you knit the - template. - -- `temp` Do not edit these files. These are files that are either used - or generated during when you knit the DRR_to_docx.rmd template. They - may include graphics, text, or data. - -- You can safely ignore most of the other folders (including `docs`, - `my-website`, `vignettes`,`.github`) and files (including - `_config.yml`, `.gitignore`, `.Rhistory`, `index.html`, and - `national-park-service-DRR.csl`). - -# Reproducible Reports - -The following is for users who are using the `DRR_to_docx.rmd` template -file to generate a data release report using RMarkdown. - -## Standard Code Chunks - -In addition to the report outline and a description of content for each -section, the template includes four standard code chunks. - -**YAML Header:** - -The YAML header helps format the DRR. You should not need to edit any of -the YAML header. - -**R code chunks:** - -- `user_edited_parameters`. A series of parameters that are used in - the creation of the DRR and may be re-used in metadata and - associated data package construction. You will need to edit these - parameters for each DRR. - - - `title`. The title of the Data Release Report. - - `reportNumber`. This is optional, and should *only* be included - if publishing in the semi-official DRR series. Set to NULL if - there is no reportNumber. - - `DRR_DSRefID`. This is the DataStore reference ID for the - report. - - `authorNames`. A list of the author's names. - - `authorAffiliations`. A list of the author's affiliations. The - order of author affiliations must match the order of the authors - in the `authorNames` list. Note that the entirety of each - affiliation is enclosed in a single set of quotations. Line - breaks are indicated with the
      tag. Do not worry about - indentation or word wrapping. If two authors have the same - affiliation, list the affiliation twice. - - `authorORCID`. A list of ORCID iDs for each author in the format - "xxxx-xxxx-xxxx-xxxx". If an author does not have an ORCID iD, - specify NA (no quotes). The order of ORCID iDs (and NAs) must - correspond to the order of authors in the `authorNames` list. - Future iterations of the DRR Template will pull ORCID iDs from - metadata and eventually from Active Directory. See - [ORCID](https://www.orcid.org/) for more information about ORCID - iDs or to register an ORCID iD. - - `DRRabstract`. The abstract for the DRR (which may be distinct - from the data package abstract). Pay careful attention to - non-standard characters, line breaks, carriage returns, and - curly-quotes. You may find it useful to write the abstract in - NotePad or some other text editor and NOT a word processor (such - as Microsoft Word). Indicate line breaks with \n and a space - between paragraphs - should you want them - using \n\n. The - Abstract should succinctly describe the study, the assay(s) - performed, the resulting data, and their reuse potential, but - should not make any claims regarding new scientific findings. No - references are allowed in this section. A good suggested length - for abstracts is less than 250 words. - - `dataPackageRefID`. DataStore reference ID for the data package - associated with this report. You must have at least one data - package. Eventually, we will automate importing much of this - information from metadata and include the ability to describe - multiple data packages in a single DRR. - - `dataPackageTitle`. The title of the data package. Must match - the title on DataStore (and metadata). - - `dataPackageDescription`. A short title/subtitle or short - description for the data package. Must match the data package - metadata. - - `dataPackageDOI`. Auto-generated, no need to edit or update. - This is the data package DOI. It is based on the DataStore - reference number. - - `dataPackage_fileNames`. List the file names in your data - package. Do NOT include metadata files. For example, include - "my_data.csv" but do NOT include "my_metadata.xml". - - `dataPackage_fileSizes`. List the approximate size of each data - file. Make sure the order of the file sizes corresponds to the - order of file names in `dataPackage_fileNames`. - `dataPackage_fileDescript`. A short description of the - corresponding data file that helps distinguish it from other - data files. A good guideline is 10 words or less. This will be - used in a table summary table so brevity is a priority. If you - have already created metadata for your data package in EML - format, this should be the same text as found in the - "entityDescription" element for each data file. - -- `setup`. Most users will not need to edit this code chunk. There is - one code snippet for loading packages; the `RRpackages` section is a - suite of packages that are used to assist with reproducible - reporting. You may not need these for your report, but we have - included them as part of the base recommended packages. If you plan - to perform you QC as part of the DRR construction process, you can - add a second code snipped to import necessary packages for your QC - process here. - -- `title_do_not_edit`. These parameters are auto-generated based on - either the EML you supplied (when that becomes an option) or the - information you've already supplied under "user-edited-parameters". - You really should not need to edit these parameters. - -- `authors_do_not_edit`. There is no need to edit this chunk. This - writes the author names, ORCID iDs, and affiliations to the .docx - document based on information supplied in user-edited-parameters. - -- `LoadData`. Any datasets you need to load can go here. For most - people these datasets are used to generate summary statistics on - proportions of data that were flagged as accepted (A) accepted, - estimated (AE) and rejected (R) during the quality control process. - -- `FileTable`. Do not edit. Generates a table of file names, sizes, - and descriptions in the data package being described by the DRR. - -- `dataFlaggingTable`. This sample code provides a summary table - defining the suggested data flagging codes. There is no need to edit - this table. - -- `Listing`. Appendix A, by default is the code listing. This will - generate all code used in generating the report and data packages. - In most cases, code listing is not required. If all QA/QC processes - and data manipulations were performed elsewhere, you should cite - that code (in the methods and references) and leave the "listing - code chunk with the default settings of eval=FALSE and echo=FALSE. - If you have developed custom scripts, you can add those to DataStore - with the reference "Script" and cite them in the DRR. - -- `session-info` is the information about the versions of R and - packages used in generating the report. In most cases, you do not - need to report session info (leave the session-info code chunk - parameters in their default state: eval=FALSE). Session and version - information is only necessary if you have set the "Listing" code - chunk in appendix A to eval=TRUE. In that case, change the "session - info" code chunk parameters to eval=TRUE. - -## Citations - -### Automating Citations - -To automate citations, add the citation in bibtex format to the file -"references.bib". You can manually copy and paste the bibtex for each -reference in, or you can search for it from within Rstudio. From within -Rstudio, make sure you are editing this document using the "Visual" view -(as opposed to "Source"). From the "Insert" drop-down menu, select "\@ -Citation..." (shortcut: Cntrl-Shift-F8). This will open a Graphical User -Interface (GUI) tool where you can view all the citations in your -reference.bib file as well as search multiple databases for references, -automatically insert the bibtex for the reference into your -references.bib file (and customize the unique identifier if you'd like) -and insert the in-text citation into the DRR template. - -```{r fig2, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Source vs. Visual editing of the Template and how to access the citation manager."} -#knitr::include_graphics("RMD_vis_source.png") -``` - -```{r fig3, echo=FALSE, out.width="75%", fig.align="center", fig.cap="Adding Citations - Using the citation manager."} -#knitr::include_graphics("R_citation_manager.png") -``` - -Once a reference is in your references.bib file, using the Visual view -of the template you can simply type the '\@' symbol and select which -reference to insert in the text. - -If you need to edit how the citation is displayed after inserting it -into the text, switch back to the "Source" view. Each bibtex citation -should start with a unique identifier; the example reference in the -supplied references.bib file has the unique identifier -"@article{Scott1994,". Using the "Source" view in Rstudio, insert the -reference in your text, by combining the "at" symbol with the portion of -the unique identifier after the curly bracket: @Scott1994 . - -| Syntax | Result | -|------------------------------------|-----------------------------------| -| `@Scott1994` concludes that ... | Scott et al., 1994 concludes that ... | -| `@Scott1994[p.33]` concludes that ... | Scott (1994, p.33) concludes that ... | -| ... end of sentence `[@Scott1994]`. | ... end of sentence (Scott et al., 1994). | -| ... end of sentence `[see @Scott1994,p.33]`. | ... end of sentence (see Scott et al. 1994,p.33). | -| delineate multiple authors with colon: `[@Scott1994; @aberdeen1958]` | delineate multiple authors with colon: (Scott et al., 1994; Aberdeen, 1958) | -| Scott et al. conclude that .... [-@Scott1994] | Scott et al. conclude that . . . (1994) | - - -The full citation, properly formatted, will be included in a "References" section at the end of the rendered MS Word document. . . though it is also worth visually -inspecting the .docx for citation completeness and formatting. - -### Manual citations - -If you would like to format your citations manually, please feel free to -do so. Make sure to look at the References section for how to -properly format each citation type. - -# Editing the Text - -The following text in the body of the DRR template will need to be -edited to customize it to each data package. - -### Data Records - -This is a required section and consists of two subheadings: - -- **Data inputs** - an optional subsection used to describe datasets - that the data package is based on if it is a re-analysis, - reorganization, or re-integration of prevously existing data sets. - -- **Summary of datasts created** - this is a required section used to - explain each data record associated with the work (for instance, a - data package), including the DOI indicating where this information - is stored. It shoudl also provide an overview of the data files and - their formats. Each external data record should be cited. - -Sample text is included that uses r code to incorporate previously -specified parameters such as the data package title, file names, and -DOI. - -A code for a sample table summarizing the contents of the data package -(except the metadata) is provided. - -### Data Quality - -This is a required section. and the text includes multiple suggested -text elements and code for an example table defining data flagging -codes. Near future development here will incorporate additional optional -tables to summarize the data quality based on the flags in the data -sets. - -### Usage Notes - -This is a required section that should contain brief instructions to -assist other researchers with reuse of the data. This may include -discussion of software packages (with appropriate citations) that are -suitable for analysing the assay data files, suggested downstream -processing steps (e.g. normalization, etc.), or tips for integrating or -comparing the data records with other datasets. Authors are encouraged -to provide code, programs or data-processing workflows if they may help -others understand or use the data. - -### Methods - -This is a required section that cites previous methods used but should -also be detailed enough in describing data production including the -experimental design, data acquisition assays, and any computational -processing (e.g. normalization, QA, QC) such that others can understand -the methods without referring to associated publications. - -Optional sub-sections within the methods include: - -- **Data Collection and Sampling** -- **Additional Data Sources** -- **Data Processing** -- **Code availability** - -### References - -This required section includes full bibliographic references for each -paper, chapter, book, data package, dataset, protocol, etc cited within -the DRR. - -There are numerous examples of proper formatting for each of these. -Future versions of the DRR will enable automatic reference formatting -given a correctly formatted bibtex file with the references (.bib). - -## Figures - -Figures should be inserted using code chunks in all cases so that figure -settings can be set in the chunk header. The chunk header should at a -minimum set the fig.align parameter to “center” and the specify the -figure caption (fig.cap parameter). Inserting figures this way will -ensure that the caption is properly formatted and it will apply copy the -caption to the figure’s “alt text” tag, making it 508-compliant. - -For example: - -```` markdown -`r ''````{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} -knitr::include_graphics("ProcessingWorkflow.png") -``` -```` - -Results in: - -```{r fig4, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} -#knitr::include_graphics("ProcessingWorkflow.png") -``` - -## Tables - -Tables should be created using the kable function. Specifying the -caption in the kable function call (as opposed to inline markdown text) -will ensure that the caption is appropriately formatted. - -For example: - -```` markdown -`r ''````{r Table2, echo=FALSE} -c1<-c("Protocol1","Protocol2","Protocol3") -c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") -c3<-c("Site 1","Site 2","Site 3") -c4<-c("Date 1","Date 2","Date 3") -c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") -Table2<-data.frame(c1,c2,c3,c4,c5) - -kable(Table2, - col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), - caption="**Table 1.** Monitoring study example Data Records table.") %>% - kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) -``` -```` - -Results in: - -```{r Table2, echo=FALSE} -c1<-c("Protocol1","Protocol2","Protocol3") -c2<-c("Park Unit 1","Park Unit 2","Park Unit 3") -c3<-c("Site 1","Site 2","Site 3") -c4<-c("Date 1","Date 2","Date 3") -c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX") -Table2<-data.frame(c1,c2,c3,c4,c5) - -kable(Table2, - col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"), - caption="**Table 1.** Monitoring study example Data Records table.") %>% - kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F) -``` - -# Publishing DRRs - -## Report Numbers - -Because data release reports and associated data packages are -cross-referential, report numbers are typically assigned early in data -processing and quality evaluation. - -- **DataStore Reference Numbers.** When developing a report and data - packages, DataStore references should be created as early in the - process as practicable. While the report and data packages are in - development, these should not be activated. - -- **Report Numbers.** If you are planning to publish a Data Release - Report with an official DRR number, please contact the IMD Deputy - Chief with the DataStore reference number associated with the DRR. - -- **Persistent Identifiers.** Digital object identifiers (DOIs) will - be assigned to all DRRs and concurrently published data packages. - DOIs will resolve to a DataStore Reference; DOIs are reserved when a - draft reference is initiated in DataStore. They are not activated - until the publication process, including relevant review, is - complete. - -DRR DOIs have the format: - -Data package DOIs have the format: - -Where the "xxxxxx" is the 7-digit DataStore reference number. - -## Liability Statements - -Under no circumstances should reports and associated data packages or -metadata published in the DRR series contain disclaimers or text that -suggests that the work does not meet scientific integrity or information -quality standards of the National Park Service. The following -disclaimers are suitable for use, depending on whether the data are -provisional or final (or approved or certified). - -> **For approved & published data sets:** "Unless otherwise stated, all -> data, metadata and related materials are considered to satisfy the -> quality standards relative to the purpose for which the data were -> collected. Although these data and associated metadata have been -> reviewed for accuracy and completeness and approved for release by the -> National Park Service Inventory and Monitoring Division, no warranty -> expressed or implied is made regarding the display or utility of the -> data for other purposes, nor on all computer systems, nor shall the -> act of distribution constitute any such warranty." - -> **For provisional data:** "The data you have secured from the National -> Park Service (NPS) database identified as [database name] have not -> received approval for release by the NPS Inventory and Monitoring -> Division, and as such are provisional and subject to revision. The -> data are released on the condition that neither the NPS nor the U.S. -> Government shall be held liable for any damages resulting from its -> authorized or unauthorized use." From 7bc3d079e9c855a9f77fa2ca690537c1ac52d9ae Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:12:53 -0700 Subject: [PATCH 15/33] update documentation --- vignettes/articles/Starting-a-DRR.Rmd | 22 ++++++++-------------- 1 file changed, 8 insertions(+), 14 deletions(-) diff --git a/vignettes/articles/Starting-a-DRR.Rmd b/vignettes/articles/Starting-a-DRR.Rmd index 1d364d3..4e577f9 100644 --- a/vignettes/articles/Starting-a-DRR.Rmd +++ b/vignettes/articles/Starting-a-DRR.Rmd @@ -57,24 +57,18 @@ library(QCkit) knitr::include_graphics(c("new_rmd.png", "new_rmd_template.png")) ``` -5. +5. After selecting "OK" two things will happne: First, you the DRR Template file will open up. It is called "Untitled.Rmd" by default. Second, a new folder will be created called "Untitled" (Unless you opted to change the default "Name:" in the "New R Markdown" pop up, then these will have whatever name you gave them). -6. [How to Use this Template](HowToUseThisTemplate.html) line-by-line instructions and descriptions for how to use the DRR Template. +6. Edit the DRR Template according to your specifications and the instructions in the ["Using the DRR Template"](Using-the-DRR_Template.html) guide. -7. [The DRR_Template](https://github.com/nationalparkservice/DRR_Template/blob/master/DRR_to_docx.Rmd) the file you make changes to to generate a DRR. Note: this is not a stand-alone file. To create a DRR please download the [zipped template](https://github.com/nationalparkservice/DRR_Template/zipball/master) with all associated files and folders. +7. When you are done, "knit" the .Rmd file to Word and submit the resulting .docx file for publication. -8. [Bibtex reference file](https://github.com/nationalparkservice/DRR_Template/raw/master/reference.bib) is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text citations to the DRR Template and your References section will automatically be generated for you when you knit the .Rmd to .docx. You should still visually check the final format in the .docx file for accuracy, completion, and formatting. If you would prefer to manually format your citations, feel free to continue doing so. +extra text to be moved elsewhere? -9. [DRR_Report](https://github.com/nationalparkservice/DRR_Template/raw/master/DRR_to_docx.docx) an example of the .docx output file that takes into account your edits and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the .Rmd to .docx format in Rstudio). +5. [Bibtex reference file](https://github.com/nationalparkservice/DRR_Template/raw/master/reference.bib) is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text citations to the DRR Template and your References section will automatically be generated for you when you knit the .Rmd to .docx. You should still visually check the final format in the .docx file for accuracy, completion, and formatting. If you would prefer to manually format your citations, feel free to continue doing so. -# Examples - -More will be provided as they are published. The following examples are post-formatting and should be used as examples for content generation only. - -1. [DRR for tabular (csv) datasets](DRAFT_2019_Report_NationalMeanDailyFlowsDataSummary.html) of hydrologic data used for calculating hydrologic metrics as a part of the national Environmental Settings monitoring protocol. +6. [DRR_Report](https://github.com/nationalparkservice/DRR_Template/raw/master/DRR_to_docx.docx) an example of the .docx output file that takes into account your edits and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the .Rmd to .docx format in Rstudio). -2. [DRR for geospatial (file geodatabase) data](NPS-NRSS-DRR-2020-1.html) continuing custom areas of analysis used for Environmental Settings monitoring protocol. Report created in Microsoft Word and ported to the template. - -# Tips, FAQs, and Errata +# Examples -(coming soon) +**Knit your own example DRR:** Assuming you left the "Name:" as the default "untitled", you should be able to knit the DRR template in to an example .docx that could be submitted for publication. If you opted to change the Name, you will need to update the the file paths before kniting. 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.../bsTable-3.3.7/bootstrapTable.js | 801 ++++++++++++++++++ .../bsTable-3.3.7/bootstrapTable.min.css | 14 + .../kePrint-0.0.1/kePrint.js | 8 + .../lightable-0.0.1/lightable.css | 272 ++++++ 6 files changed, 1997 insertions(+) create mode 100644 docs/articles/Starting-a-DRR.html create mode 100644 docs/articles/Using-the-DRR-Template.html create mode 100644 docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.js create mode 100644 docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.min.css create mode 100644 docs/articles/Using-the-DRR-Template_files/kePrint-0.0.1/kePrint.js create mode 100644 docs/articles/Using-the-DRR-Template_files/lightable-0.0.1/lightable.css diff --git a/docs/articles/Starting-a-DRR.html b/docs/articles/Starting-a-DRR.html new file mode 100644 index 0000000..8ee7799 --- /dev/null +++ b/docs/articles/Starting-a-DRR.html @@ -0,0 +1,241 @@ + + + + + + + +Starting a DRR • QCkit + + + + + + + + + + + + + + + + + + + + + diff --git a/docs/articles/Using-the-DRR-Template.html b/docs/articles/Using-the-DRR-Template.html new file mode 100644 index 0000000..70f9722 --- /dev/null +++ b/docs/articles/Using-the-DRR-Template.html @@ -0,0 +1,661 @@ + + + + + + + +Using the DRR Template • QCkit + + + + + + + + + + + + +
      +
      + + + + +
      + +
      +
      +
      +

      Using the DRR Template

      + + + Source: vignettes/articles/Using-the-DRR-Template.Rmd + + +
      + + + +
      +

      Overview +

      +

      Data Release Reports (DRRs) are created by the National Park Service +and provide detailed descriptions of valuable research datasets, +including the methods used to collect the data and technical analyses +supporting the quality of the measurements. Data Release Reports focus +on helping others reuse data, rather than presenting results, testing +hypotheses, or presenting new interpretations, methods or in-depth +analyses.

      +

      DRRs are intended to document the processing of fully-QAed data to +their final (QCed) form in a reproducible and transparent manner. DRRs +document the data collection methods and quality standards used to +prepare and review data prior to release. DRRs present the quality of +resultant data in the context of fitness for their intended use.

      +

      Each DRR cites source and resultant datasets that are published +concurrently and cross-referenced. Associated datasets are made publicly +available with the exception of data that must be protected from release +as per NPS and park-specific policies.

      +

      Data packages that are published concurrently with DRRs are intended +to be independently citable scientific works that can serve as the basis +for subsequent analysis and reporting by NPS or third parties.

      +
      +
      +

      Project Set-up +

      +

      The Template is not a stand-alone file but instead has multiple +associated and dependent files. New projects can be established using by +downloading the Zip file associated with the latest release +of the DRR template repository on GitHub.

      +
      +

      Folder Structure +

      +

      General directory contents are as follows (Figure 1):

      +
        +
      • +

        input This is the only location (other than the +template script itself) where you you should manually change or edit +files. This is where data files you need to supply should be placed.

        +
          +
        • +figures If you have figures that are not generated as +part of running this template, place those files here.
          • +
        +
        • +

      • output Do not edit these files. This is where you +can find your final products. Edits to files in this folder will not be +incorporated when you knit the DRR_to_docx.rmd file. Any edits you make +to files in this directory may be overwritten when you knit the +template.

        • +

      • temp Do not edit these files. These are files that +are either used or generated during when you knit the DRR_to_docx.rmd +template. They may include graphics, text, or data.

        • +

      • You can safely ignore most of the other folders (including +docs, my-website, +vignettes,.github) and files (including +_config.yml, .gitignore, +.Rhistory, index.html, and +national-park-service-DRR.csl).

        • +
      +
      +
      +
      +

      Reproducible Reports +

      +

      The following is for users who are using the +DRR_to_docx.rmd template file to generate a data release +report using RMarkdown.

      +
      +

      Standard Code Chunks +

      +

      In addition to the report outline and a description of content for +each section, the template includes four standard code chunks.

      +

      YAML Header:

      +

      The YAML header helps format the DRR. You should not need to edit any +of the YAML header.

      +

      R code chunks:

      +
        +
      • +

        user_edited_parameters. A series of parameters that +are used in the creation of the DRR and may be re-used in metadata and +associated data package construction. You will need to edit these +parameters for each DRR.

        +
          +
        • +title. The title of the Data Release Report.
          • +
        • +reportNumber. This is optional, and should +only be included if publishing in the semi-official DRR series. +Set to NULL if there is no reportNumber.
          • +
        • +DRR_DSRefID. This is the DataStore reference ID for the +report.
          • +
        • +authorNames. A list of the author’s names.
          • +
        • +authorAffiliations. A list of the author’s +affiliations. The order of author affiliations must match the order of +the authors in the authorNames list. Note that the entirety +of each affiliation is enclosed in a single set of quotations. Line +breaks are indicated with the
          tag. Do not worry about indentation +or word wrapping. If two authors have the same affiliation, list the +affiliation twice.
          • +
        • +authorORCID. A list of ORCID iDs for each author in the +format “xxxx-xxxx-xxxx-xxxx”. If an author does not have an ORCID iD, +specify NA (no quotes). The order of ORCID iDs (and NAs) must correspond +to the order of authors in the authorNames list. Future +iterations of the DRR Template will pull ORCID iDs from metadata and +eventually from Active Directory. See ORCID for more information about ORCID +iDs or to register an ORCID iD.
          • +
        • +DRRabstract. The abstract for the DRR (which may be +distinct from the data package abstract). Pay careful attention to +non-standard characters, line breaks, carriage returns, and +curly-quotes. You may find it useful to write the abstract in NotePad or +some other text editor and NOT a word processor (such as Microsoft +Word). Indicate line breaks with and a space between paragraphs - should +you want them - using . The Abstract should succinctly describe the +study, the assay(s) performed, the resulting data, and their reuse +potential, but should not make any claims regarding new scientific +findings. No references are allowed in this section. A good suggested +length for abstracts is less than 250 words.
          • +
        • +dataPackageRefID. DataStore reference ID for the data +package associated with this report. You must have at least one data +package. Eventually, we will automate importing much of this information +from metadata and include the ability to describe multiple data packages +in a single DRR.
          • +
        • +dataPackageTitle. The title of the data package. Must +match the title on DataStore (and metadata).
          • +
        • +dataPackageDescription. A short title/subtitle or short +description for the data package. Must match the data package +metadata.
          • +
        • +dataPackageDOI. Auto-generated, no need to edit or +update. This is the data package DOI. It is based on the DataStore +reference number.
          • +
        • +dataPackage_fileNames. List the file names in your data +package. Do NOT include metadata files. For example, include +“my_data.csv” but do NOT include “my_metadata.xml”.
          • +
        • +dataPackage_fileSizes. List the approximate size of +each data file. Make sure the order of the file sizes corresponds to the +order of file names in dataPackage_fileNames. +dataPackage_fileDescript. A short description of the +corresponding data file that helps distinguish it from other data files. +A good guideline is 10 words or less. This will be used in a table +summary table so brevity is a priority. If you have already created +metadata for your data package in EML format, this should be the same +text as found in the “entityDescription” element for each data +file.
          • +
        +
        • +

      • setup. Most users will not need to edit this code +chunk. There is one code snippet for loading packages; the +RRpackages section is a suite of packages that are used to +assist with reproducible reporting. You may not need these for your +report, but we have included them as part of the base recommended +packages. If you plan to perform you QC as part of the DRR construction +process, you can add a second code snipped to import necessary packages +for your QC process here.

        • +

      • title_do_not_edit. These parameters are +auto-generated based on either the EML you supplied (when that becomes +an option) or the information you’ve already supplied under +“user-edited-parameters”. You really should not need to edit these +parameters.

        • +

      • authors_do_not_edit. There is no need to edit this +chunk. This writes the author names, ORCID iDs, and affiliations to the +.docx document based on information supplied in +user-edited-parameters.

        • +

      • LoadData. Any datasets you need to load can go here. +For most people these datasets are used to generate summary statistics +on proportions of data that were flagged as accepted (A) accepted, +estimated (AE) and rejected (R) during the quality control +process.

        • +

      • FileTable. Do not edit. Generates a table of file +names, sizes, and descriptions in the data package being described by +the DRR.

        • +

      • dataFlaggingTable. This sample code provides a +summary table defining the suggested data flagging codes. There is no +need to edit this table.

        • +

      • Listing. Appendix A, by default is the code listing. +This will generate all code used in generating the report and data +packages. In most cases, code listing is not required. If all QA/QC +processes and data manipulations were performed elsewhere, you should +cite that code (in the methods and references) and leave the “listing +code chunk with the default settings of eval=FALSE and echo=FALSE. If +you have developed custom scripts, you can add those to DataStore with +the reference”Script” and cite them in the DRR.

        • +

      • session-info is the information about the versions +of R and packages used in generating the report. In most cases, you do +not need to report session info (leave the session-info code chunk +parameters in their default state: eval=FALSE). Session and version +information is only necessary if you have set the “Listing” code chunk +in appendix A to eval=TRUE. In that case, change the “session info” code +chunk parameters to eval=TRUE.

        • +
      +
      +
      +

      Citations +

      +
      +

      Automating Citations +

      +

      To automate citations, add the citation in bibtex format to the file +“references.bib”. You can manually copy and paste the bibtex for each +reference in, or you can search for it from within Rstudio. From within +Rstudio, make sure you are editing this document using the “Visual” view +(as opposed to “Source”). From the “Insert” drop-down menu, select “@ +Citation…” (shortcut: Cntrl-Shift-F8). This will open a Graphical User +Interface (GUI) tool where you can view all the citations in your +reference.bib file as well as search multiple databases for references, +automatically insert the bibtex for the reference into your +references.bib file (and customize the unique identifier if you’d like) +and insert the in-text citation into the DRR template.

      +

      Once a reference is in your references.bib file, using the Visual +view of the template you can simply type the ‘@’ symbol and select which +reference to insert in the text.

      +

      If you need to edit how the citation is displayed after inserting it +into the text, switch back to the “Source” view. Each bibtex citation +should start with a unique identifier; the example reference in the +supplied references.bib file has the unique identifier “@article{Scott1994,”. Using the “Source” view in +Rstudio, insert the reference in your text, by combining the “at” symbol +with the portion of the unique identifier after the curly bracket: @Scott1994 .

      + ++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
      SyntaxResult
      +@Scott1994 concludes that …Scott et al., 1994 concludes that …
      +@Scott1994[p.33] concludes that …Scott (1994, p.33) concludes that …
      … end of sentence [@Scott1994].… end of sentence (Scott et al., 1994).
      … end of sentence [see @Scott1994,p.33].… end of sentence (see Scott et al. 1994,p.33).
      delineate multiple authors with colon: +[@Scott1994; @aberdeen1958] +delineate multiple authors with colon: (Scott et al., 1994; +Aberdeen, 1958)
      Scott et al. conclude that …. [-@Scott1994] +Scott et al. conclude that . . . (1994)
      +

      The full citation, properly formatted, will be included in a +“References” section at the end of the rendered MS Word document. . . +though it is also worth visually inspecting the .docx for citation +completeness and formatting.

      +
      +
      +

      Manual citations +

      +

      If you would like to format your citations manually, please feel free +to do so. Make sure to look at the References section for how to +properly format each citation type.

      +
      +
      +
      +
      +

      Editing the Text +

      +

      The following text in the body of the DRR template will need to be +edited to customize it to each data package.

      +
      +

      Data Records +

      +

      This is a required section and consists of two subheadings:

      +
        +

      • Data inputs - an optional subsection used to +describe datasets that the data package is based on if it is a +re-analysis, reorganization, or re-integration of prevously existing +data sets.

        • +

      • Summary of datasts created - this is a required +section used to explain each data record associated with the work (for +instance, a data package), including the DOI indicating where this +information is stored. It shoudl also provide an overview of the data +files and their formats. Each external data record should be +cited.

        • +
      +

      Sample text is included that uses r code to incorporate previously +specified parameters such as the data package title, file names, and +DOI.

      +

      A code for a sample table summarizing the contents of the data +package (except the metadata) is provided.

      +
      +
      +

      Data Quality +

      +

      This is a required section. and the text includes multiple suggested +text elements and code for an example table defining data flagging +codes. Near future development here will incorporate additional optional +tables to summarize the data quality based on the flags in the data +sets.

      +
      +
      +

      Usage Notes +

      +

      This is a required section that should contain brief instructions to +assist other researchers with reuse of the data. This may include +discussion of software packages (with appropriate citations) that are +suitable for analysing the assay data files, suggested downstream +processing steps (e.g. normalization, etc.), or tips for integrating or +comparing the data records with other datasets. Authors are encouraged +to provide code, programs or data-processing workflows if they may help +others understand or use the data.

      +
      +
      +

      Methods +

      +

      This is a required section that cites previous methods used but +should also be detailed enough in describing data production including +the experimental design, data acquisition assays, and any computational +processing (e.g. normalization, QA, QC) such that others can understand +the methods without referring to associated publications.

      +

      Optional sub-sections within the methods include:

      +
        +
      • Data Collection and Sampling
        • +
      • Additional Data Sources
        • +
      • Data Processing
        • +
      • Code availability
        • +
      +
      +
      +

      References +

      +

      This required section includes full bibliographic references for each +paper, chapter, book, data package, dataset, protocol, etc cited within +the DRR.

      +

      There are numerous examples of proper formatting for each of these. +Future versions of the DRR will enable automatic reference formatting +given a correctly formatted bibtex file with the references (.bib).

      +
      +
      +

      Figures +

      +

      Figures should be inserted using code chunks in all cases so that +figure settings can be set in the chunk header. The chunk header should +at a minimum set the fig.align parameter to “center” and the specify the +figure caption (fig.cap parameter). Inserting figures this way will +ensure that the caption is properly formatted and it will apply copy the +caption to the figure’s “alt text” tag, making it 508-compliant.

      +

      For example:

      +
      ```{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} 
+knitr::include_graphics("ProcessingWorkflow.png")
+```
      +

      Results in:

      +
      +
      +

      Tables +

      +

      Tables should be created using the kable function. Specifying the +caption in the kable function call (as opposed to inline markdown text) +will ensure that the caption is appropriately formatted.

      +

      For example:

      +
      ```{r Table2, echo=FALSE}
+c1<-c("Protocol1","Protocol2","Protocol3")
+c2<-c("Park Unit 1","Park Unit 2","Park Unit 3")
+c3<-c("Site 1","Site 2","Site 3")
+c4<-c("Date 1","Date 2","Date 3")
+c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX")
+Table2<-data.frame(c1,c2,c3,c4,c5)
+
+kable(Table2, 
+      col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"),
+      caption="**Table 1.** Monitoring study example Data Records table.") %>%
+  kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F)
+```
      +

      Results in:

      + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
      +Table 1. Monitoring study example Data Records table. +
      +Subjects + +Park Units + +Locations + +Sampling Dates + +Data +
      +Protocol1 + +Park Unit 1 + +Site 1 + +Date 1 + +GEOXXXXX +
      +Protocol2 + +Park Unit 2 + +Site 2 + +Date 2 + +GEOXXXXX +
      +Protocol3 + +Park Unit 3 + +Site 3 + +Date 3 + +GEOXXXXX +
      +
      +
      +
      +

      Publishing DRRs +

      +
      +

      Report Numbers +

      +

      Because data release reports and associated data packages are +cross-referential, report numbers are typically assigned early in data +processing and quality evaluation.

      +
        +

      • DataStore Reference Numbers. When developing a +report and data packages, DataStore references should be created as +early in the process as practicable. While the report and data packages +are in development, these should not be activated.

        • +

      • Report Numbers. If you are planning to publish a +Data Release Report with an official DRR number, please contact the IMD +Deputy Chief with the DataStore reference number associated with the +DRR.

        • +

      • Persistent Identifiers. Digital object +identifiers (DOIs) will be assigned to all DRRs and concurrently +published data packages. DOIs will resolve to a DataStore Reference; +DOIs are reserved when a draft reference is initiated in DataStore. They +are not activated until the publication process, including relevant +review, is complete.

        • +
      +

      DRR DOIs have the format: https://doi.org/10.36967/xxxxxxx

      +

      Data package DOIs have the format: https://doi.org/10.57830/xxxxxxx

      +

      Where the “xxxxxx” is the 7-digit DataStore reference number.

      +
      +
      +

      Liability Statements +

      +

      Under no circumstances should reports and associated data packages or +metadata published in the DRR series contain disclaimers or text that +suggests that the work does not meet scientific integrity or information +quality standards of the National Park Service. The following +disclaimers are suitable for use, depending on whether the data are +provisional or final (or approved or certified).

      +
      +

      For approved & published data sets: “Unless +otherwise stated, all data, metadata and related materials are +considered to satisfy the quality standards relative to the purpose for +which the data were collected. Although these data and associated +metadata have been reviewed for accuracy and completeness and approved +for release by the National Park Service Inventory and Monitoring +Division, no warranty expressed or implied is made regarding the display +or utility of the data for other purposes, nor on all computer systems, +nor shall the act of distribution constitute any such warranty.”

      +
      +
      +

      For provisional data: “The data you have secured +from the National Park Service (NPS) database identified as [database +name] have not received approval for release by the NPS Inventory and +Monitoring Division, and as such are provisional and subject to +revision. The data are released on the condition that neither the NPS +nor the U.S. Government shall be held liable for any damages resulting +from its authorized or unauthorized use.”

      +
      +
      +
      +
      + + + +
      + + + +
      +

      +

      Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

      +
      + +
      +

      +

      Site built with pkgdown 2.0.7.

      +
      + +
      +
      + + + + + + + + diff --git a/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.js b/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.js new file mode 100644 index 0000000..0c83d3b --- /dev/null +++ b/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.js @@ -0,0 +1,801 @@ +/* ======================================================================== + * Bootstrap: tooltip.js v3.4.1 + * https://getbootstrap.com/docs/3.4/javascript/#tooltip + * Inspired by the original jQuery.tipsy by Jason Frame + * ======================================================================== + * Copyright 2011-2019 Twitter, Inc. + * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) + * ======================================================================== */ + ++function ($) { + 'use strict'; + + var DISALLOWED_ATTRIBUTES = ['sanitize', 'whiteList', 'sanitizeFn'] + + var uriAttrs = [ + 'background', + 'cite', + 'href', + 'itemtype', + 'longdesc', + 'poster', + 'src', + 'xlink:href' + ] + + var ARIA_ATTRIBUTE_PATTERN = /^aria-[\w-]*$/i + + var DefaultWhitelist = { + // Global attributes allowed on any supplied element below. + '*': ['class', 'dir', 'id', 'lang', 'role', ARIA_ATTRIBUTE_PATTERN], + a: ['target', 'href', 'title', 'rel'], + area: [], + b: [], + br: [], + col: [], + code: [], + div: [], + em: [], + hr: [], + h1: [], + h2: [], + h3: [], + h4: [], + h5: [], + h6: [], + i: [], + img: ['src', 'alt', 'title', 'width', 'height'], + li: [], + ol: [], + p: [], + pre: [], + s: [], + small: [], + span: [], + sub: [], + sup: [], + strong: [], + u: [], + ul: [] + } + + /** + * A pattern that recognizes a commonly useful subset of URLs that are safe. + * + * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts + */ + var SAFE_URL_PATTERN = /^(?:(?:https?|mailto|ftp|tel|file):|[^&:/?#]*(?:[/?#]|$))/gi + + /** + * A pattern that matches safe data URLs. Only matches image, video and audio types. + * + * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts + */ + var DATA_URL_PATTERN = /^data:(?:image\/(?:bmp|gif|jpeg|jpg|png|tiff|webp)|video\/(?:mpeg|mp4|ogg|webm)|audio\/(?:mp3|oga|ogg|opus));base64,[a-z0-9+/]+=*$/i + + function allowedAttribute(attr, allowedAttributeList) { + var attrName = attr.nodeName.toLowerCase() + + if ($.inArray(attrName, allowedAttributeList) !== -1) { + if ($.inArray(attrName, uriAttrs) !== -1) { + return Boolean(attr.nodeValue.match(SAFE_URL_PATTERN) || attr.nodeValue.match(DATA_URL_PATTERN)) + } + + return true + } + + var regExp = $(allowedAttributeList).filter(function (index, value) { + return value instanceof RegExp + }) + + // Check if a regular expression validates the attribute. + for (var i = 0, l = regExp.length; i < l; i++) { + if (attrName.match(regExp[i])) { + return true + } + } + + return false + } + + function sanitizeHtml(unsafeHtml, whiteList, sanitizeFn) { + if (unsafeHtml.length === 0) { + return unsafeHtml + } + + if (sanitizeFn && typeof sanitizeFn === 'function') { + return sanitizeFn(unsafeHtml) + } + + // IE 8 and below don't support createHTMLDocument + if (!document.implementation || !document.implementation.createHTMLDocument) { + return unsafeHtml + } + + var createdDocument = document.implementation.createHTMLDocument('sanitization') + createdDocument.body.innerHTML = unsafeHtml + + var whitelistKeys = $.map(whiteList, function (el, i) { return i }) + var elements = $(createdDocument.body).find('*') + + for (var i = 0, len = elements.length; i < len; i++) { + var el = elements[i] + var elName = el.nodeName.toLowerCase() + + if ($.inArray(elName, whitelistKeys) === -1) { + el.parentNode.removeChild(el) + + continue + } + + var attributeList = $.map(el.attributes, function (el) { return el }) + var whitelistedAttributes = [].concat(whiteList['*'] || [], whiteList[elName] || []) + + for (var j = 0, len2 = attributeList.length; j < len2; j++) { + if (!allowedAttribute(attributeList[j], whitelistedAttributes)) { + el.removeAttribute(attributeList[j].nodeName) + } + } + } + + return createdDocument.body.innerHTML + } + + // TOOLTIP PUBLIC CLASS DEFINITION + // =============================== + + var Tooltip = function (element, options) { + this.type = null + this.options = null + this.enabled = null + this.timeout = null + this.hoverState = null + this.$element = null + this.inState = null + + this.init('tooltip', element, options) + } + + Tooltip.VERSION = '3.4.1' + + Tooltip.TRANSITION_DURATION = 150 + + Tooltip.DEFAULTS = { + animation: true, + placement: 'top', + selector: false, + template: '', + trigger: 'hover focus', + title: '', + delay: 0, + html: false, + container: false, + viewport: { + selector: 'body', + padding: 0 + }, + sanitize : true, + sanitizeFn : null, + whiteList : DefaultWhitelist + } + + Tooltip.prototype.init = function (type, element, options) { + this.enabled = true + this.type = type + this.$element = $(element) + this.options = this.getOptions(options) + this.$viewport = this.options.viewport && $(document).find($.isFunction(this.options.viewport) ? this.options.viewport.call(this, this.$element) : (this.options.viewport.selector || this.options.viewport)) + this.inState = { click: false, hover: false, focus: false } + + if (this.$element[0] instanceof document.constructor && !this.options.selector) { + throw new Error('`selector` option must be specified when initializing ' + this.type + ' on the window.document object!') + } + + var triggers = this.options.trigger.split(' ') + + for (var i = triggers.length; i--;) { + var trigger = triggers[i] + + if (trigger == 'click') { + this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) + } else if (trigger != 'manual') { + var eventIn = trigger == 'hover' ? 'mouseenter' : 'focusin' + var eventOut = trigger == 'hover' ? 'mouseleave' : 'focusout' + + this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) + this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) + } + } + + this.options.selector ? + (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) : + this.fixTitle() + } + + Tooltip.prototype.getDefaults = function () { + return Tooltip.DEFAULTS + } + + Tooltip.prototype.getOptions = function (options) { + var dataAttributes = this.$element.data() + + for (var dataAttr in dataAttributes) { + if (dataAttributes.hasOwnProperty(dataAttr) && $.inArray(dataAttr, DISALLOWED_ATTRIBUTES) !== -1) { + delete dataAttributes[dataAttr] + } + } + + options = $.extend({}, this.getDefaults(), dataAttributes, options) + + if (options.delay && typeof options.delay == 'number') { + options.delay = { + show: options.delay, + hide: options.delay + } + } + + if (options.sanitize) { + options.template = sanitizeHtml(options.template, options.whiteList, options.sanitizeFn) + } + + return options + } + + Tooltip.prototype.getDelegateOptions = function () { + var options = {} + var defaults = this.getDefaults() + + this._options && $.each(this._options, function (key, value) { + if (defaults[key] != value) options[key] = value + }) + + return options + } + + Tooltip.prototype.enter = function (obj) { + var self = obj instanceof this.constructor ? + obj : $(obj.currentTarget).data('bs.' + this.type) + + if (!self) { + self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) + $(obj.currentTarget).data('bs.' + this.type, self) + } + + if (obj instanceof $.Event) { + self.inState[obj.type == 'focusin' ? 'focus' : 'hover'] = true + } + + if (self.tip().hasClass('in') || self.hoverState == 'in') { + self.hoverState = 'in' + return + } + + clearTimeout(self.timeout) + + self.hoverState = 'in' + + if (!self.options.delay || !self.options.delay.show) return self.show() + + self.timeout = setTimeout(function () { + if (self.hoverState == 'in') self.show() + }, self.options.delay.show) + } + + Tooltip.prototype.isInStateTrue = function () { + for (var key in this.inState) { + if (this.inState[key]) return true + } + + return false + } + + Tooltip.prototype.leave = function (obj) { + var self = obj instanceof this.constructor ? + obj : $(obj.currentTarget).data('bs.' + this.type) + + if (!self) { + self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) + $(obj.currentTarget).data('bs.' + this.type, self) + } + + if (obj instanceof $.Event) { + self.inState[obj.type == 'focusout' ? 'focus' : 'hover'] = false + } + + if (self.isInStateTrue()) return + + clearTimeout(self.timeout) + + self.hoverState = 'out' + + if (!self.options.delay || !self.options.delay.hide) return self.hide() + + self.timeout = setTimeout(function () { + if (self.hoverState == 'out') self.hide() + }, self.options.delay.hide) + } + + Tooltip.prototype.show = function () { + var e = $.Event('show.bs.' + this.type) + + if (this.hasContent() && this.enabled) { + this.$element.trigger(e) + + var inDom = $.contains(this.$element[0].ownerDocument.documentElement, this.$element[0]) + if (e.isDefaultPrevented() || !inDom) return + var that = this + + var $tip = this.tip() + + var tipId = this.getUID(this.type) + + this.setContent() + $tip.attr('id', tipId) + this.$element.attr('aria-describedby', tipId) + + if (this.options.animation) $tip.addClass('fade') + + var placement = typeof this.options.placement == 'function' ? + this.options.placement.call(this, $tip[0], this.$element[0]) : + this.options.placement + + var autoToken = /\s?auto?\s?/i + var autoPlace = autoToken.test(placement) + if (autoPlace) placement = placement.replace(autoToken, '') || 'top' + + $tip + .detach() + .css({ top: 0, left: 0, display: 'block' }) + .addClass(placement) + .data('bs.' + this.type, this) + + this.options.container ? $tip.appendTo($(document).find(this.options.container)) : $tip.insertAfter(this.$element) + this.$element.trigger('inserted.bs.' + this.type) + + var pos = this.getPosition() + var actualWidth = $tip[0].offsetWidth + var actualHeight = $tip[0].offsetHeight + + if (autoPlace) { + var orgPlacement = placement + var viewportDim = this.getPosition(this.$viewport) + + placement = placement == 'bottom' && pos.bottom + actualHeight > viewportDim.bottom ? 'top' : + placement == 'top' && pos.top - actualHeight < viewportDim.top ? 'bottom' : + placement == 'right' && pos.right + actualWidth > viewportDim.width ? 'left' : + placement == 'left' && pos.left - actualWidth < viewportDim.left ? 'right' : + placement + + $tip + .removeClass(orgPlacement) + .addClass(placement) + } + + var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight) + + this.applyPlacement(calculatedOffset, placement) + + var complete = function () { + var prevHoverState = that.hoverState + that.$element.trigger('shown.bs.' + that.type) + that.hoverState = null + + if (prevHoverState == 'out') that.leave(that) + } + + $.support.transition && this.$tip.hasClass('fade') ? + $tip + .one('bsTransitionEnd', complete) + .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : + complete() + } + } + + Tooltip.prototype.applyPlacement = function (offset, placement) { + var $tip = this.tip() + var width = $tip[0].offsetWidth + var height = $tip[0].offsetHeight + + // manually read margins because getBoundingClientRect includes difference + var marginTop = parseInt($tip.css('margin-top'), 10) + var marginLeft = parseInt($tip.css('margin-left'), 10) + + // we must check for NaN for ie 8/9 + if (isNaN(marginTop)) marginTop = 0 + if (isNaN(marginLeft)) marginLeft = 0 + + offset.top += marginTop + offset.left += marginLeft + + // $.fn.offset doesn't round pixel values + // so we use setOffset directly with our own function B-0 + $.offset.setOffset($tip[0], $.extend({ + using: function (props) { + $tip.css({ + top: Math.round(props.top), + left: Math.round(props.left) + }) + } + }, offset), 0) + + $tip.addClass('in') + + // check to see if placing tip in new offset caused the tip to resize itself + var actualWidth = $tip[0].offsetWidth + var actualHeight = $tip[0].offsetHeight + + if (placement == 'top' && actualHeight != height) { + offset.top = offset.top + height - actualHeight + } + + var delta = this.getViewportAdjustedDelta(placement, offset, actualWidth, actualHeight) + + if (delta.left) offset.left += delta.left + else offset.top += delta.top + + var isVertical = /top|bottom/.test(placement) + var arrowDelta = isVertical ? delta.left * 2 - width + actualWidth : delta.top * 2 - height + actualHeight + var arrowOffsetPosition = isVertical ? 'offsetWidth' : 'offsetHeight' + + $tip.offset(offset) + this.replaceArrow(arrowDelta, $tip[0][arrowOffsetPosition], isVertical) + } + + Tooltip.prototype.replaceArrow = function (delta, dimension, isVertical) { + this.arrow() + .css(isVertical ? 'left' : 'top', 50 * (1 - delta / dimension) + '%') + .css(isVertical ? 'top' : 'left', '') + } + + Tooltip.prototype.setContent = function () { + var $tip = this.tip() + var title = this.getTitle() + + if (this.options.html) { + if (this.options.sanitize) { + title = sanitizeHtml(title, this.options.whiteList, this.options.sanitizeFn) + } + + $tip.find('.tooltip-inner').html(title) + } else { + $tip.find('.tooltip-inner').text(title) + } + + $tip.removeClass('fade in top bottom left right') + } + + Tooltip.prototype.hide = function (callback) { + var that = this + var $tip = $(this.$tip) + var e = $.Event('hide.bs.' + this.type) + + function complete() { + if (that.hoverState != 'in') $tip.detach() + if (that.$element) { // TODO: Check whether guarding this code with this `if` is really necessary. + that.$element + .removeAttr('aria-describedby') + .trigger('hidden.bs.' + that.type) + } + callback && callback() + } + + this.$element.trigger(e) + + if (e.isDefaultPrevented()) return + + $tip.removeClass('in') + + $.support.transition && $tip.hasClass('fade') ? + $tip + .one('bsTransitionEnd', complete) + .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : + complete() + + this.hoverState = null + + return this + } + + Tooltip.prototype.fixTitle = function () { + var $e = this.$element + if ($e.attr('title') || typeof $e.attr('data-original-title') != 'string') { + $e.attr('data-original-title', $e.attr('title') || '').attr('title', '') + } + } + + Tooltip.prototype.hasContent = function () { + return this.getTitle() + } + + Tooltip.prototype.getPosition = function ($element) { + $element = $element || this.$element + + var el = $element[0] + var isBody = el.tagName == 'BODY' + + var elRect = el.getBoundingClientRect() + if (elRect.width == null) { + // width and height are missing in IE8, so compute them manually; see https://github.com/twbs/bootstrap/issues/14093 + elRect = $.extend({}, elRect, { width: elRect.right - elRect.left, height: elRect.bottom - elRect.top }) + } + var isSvg = window.SVGElement && el instanceof window.SVGElement + // Avoid using $.offset() on SVGs since it gives incorrect results in jQuery 3. + // See https://github.com/twbs/bootstrap/issues/20280 + var elOffset = isBody ? { top: 0, left: 0 } : (isSvg ? null : $element.offset()) + var scroll = { scroll: isBody ? document.documentElement.scrollTop || document.body.scrollTop : $element.scrollTop() } + var outerDims = isBody ? { width: $(window).width(), height: $(window).height() } : null + + return $.extend({}, elRect, scroll, outerDims, elOffset) + } + + Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) { + return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } : + placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } : + placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } : + /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width } + + } + + Tooltip.prototype.getViewportAdjustedDelta = function (placement, pos, actualWidth, actualHeight) { + var delta = { top: 0, left: 0 } + if (!this.$viewport) return delta + + var viewportPadding = this.options.viewport && this.options.viewport.padding || 0 + var viewportDimensions = this.getPosition(this.$viewport) + + if (/right|left/.test(placement)) { + var topEdgeOffset = pos.top - viewportPadding - viewportDimensions.scroll + var bottomEdgeOffset = pos.top + viewportPadding - viewportDimensions.scroll + actualHeight + if (topEdgeOffset < viewportDimensions.top) { // top overflow + delta.top = viewportDimensions.top - topEdgeOffset + } else if (bottomEdgeOffset > viewportDimensions.top + viewportDimensions.height) { // bottom overflow + delta.top = viewportDimensions.top + viewportDimensions.height - bottomEdgeOffset + } + } else { + var leftEdgeOffset = pos.left - viewportPadding + var rightEdgeOffset = pos.left + viewportPadding + actualWidth + if (leftEdgeOffset < viewportDimensions.left) { // left overflow + delta.left = viewportDimensions.left - leftEdgeOffset + } else if (rightEdgeOffset > viewportDimensions.right) { // right overflow + delta.left = viewportDimensions.left + viewportDimensions.width - rightEdgeOffset + } + } + + return delta + } + + Tooltip.prototype.getTitle = function () { + var title + var $e = this.$element + var o = this.options + + title = $e.attr('data-original-title') + || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title) + + return title + } + + Tooltip.prototype.getUID = function (prefix) { + do prefix += ~~(Math.random() * 1000000) + while (document.getElementById(prefix)) + return prefix + } + + Tooltip.prototype.tip = function () { + if (!this.$tip) { + this.$tip = $(this.options.template) + if (this.$tip.length != 1) { + throw new Error(this.type + ' `template` option must consist of exactly 1 top-level element!') + } + } + return this.$tip + } + + Tooltip.prototype.arrow = function () { + return (this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow')) + } + + Tooltip.prototype.enable = function () { + this.enabled = true + } + + Tooltip.prototype.disable = function () { + this.enabled = false + } + + Tooltip.prototype.toggleEnabled = function () { + this.enabled = !this.enabled + } + + Tooltip.prototype.toggle = function (e) { + var self = this + if (e) { + self = $(e.currentTarget).data('bs.' + this.type) + if (!self) { + self = new this.constructor(e.currentTarget, this.getDelegateOptions()) + $(e.currentTarget).data('bs.' + this.type, self) + } + } + + if (e) { + self.inState.click = !self.inState.click + if (self.isInStateTrue()) self.enter(self) + else self.leave(self) + } else { + self.tip().hasClass('in') ? self.leave(self) : self.enter(self) + } + } + + Tooltip.prototype.destroy = function () { + var that = this + clearTimeout(this.timeout) + this.hide(function () { + that.$element.off('.' + that.type).removeData('bs.' + that.type) + if (that.$tip) { + that.$tip.detach() + } + that.$tip = null + that.$arrow = null + that.$viewport = null + that.$element = null + }) + } + + Tooltip.prototype.sanitizeHtml = function (unsafeHtml) { + return sanitizeHtml(unsafeHtml, this.options.whiteList, this.options.sanitizeFn) + } + + // TOOLTIP PLUGIN DEFINITION + // ========================= + + function Plugin(option) { + return this.each(function () { + var $this = $(this) + var data = $this.data('bs.tooltip') + var options = typeof option == 'object' && option + + if (!data && /destroy|hide/.test(option)) return + if (!data) $this.data('bs.tooltip', (data = new Tooltip(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + var old = $.fn.tooltip + + $.fn.tooltip = Plugin + $.fn.tooltip.Constructor = Tooltip + + + // TOOLTIP NO CONFLICT + // =================== + + $.fn.tooltip.noConflict = function () { + $.fn.tooltip = old + return this + } + +}(jQuery); + +/* ======================================================================== + * Bootstrap: popover.js v3.4.1 + * https://getbootstrap.com/docs/3.4/javascript/#popovers + * ======================================================================== + * Copyright 2011-2019 Twitter, Inc. + * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) + * ======================================================================== */ + + ++function ($) { + 'use strict'; + + // POPOVER PUBLIC CLASS DEFINITION + // =============================== + + var Popover = function (element, options) { + this.init('popover', element, options) + } + + if (!$.fn.tooltip) throw new Error('Popover requires tooltip.js') + + Popover.VERSION = '3.4.1' + + Popover.DEFAULTS = $.extend({}, $.fn.tooltip.Constructor.DEFAULTS, { + placement: 'right', + trigger: 'click', + content: '', + template: '' + }) + + + // NOTE: POPOVER EXTENDS tooltip.js + // ================================ + + Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype) + + Popover.prototype.constructor = Popover + + Popover.prototype.getDefaults = function () { + return Popover.DEFAULTS + } + + Popover.prototype.setContent = function () { + var $tip = this.tip() + var title = this.getTitle() + var content = this.getContent() + + if (this.options.html) { + var typeContent = typeof content + + if (this.options.sanitize) { + title = this.sanitizeHtml(title) + + if (typeContent === 'string') { + content = this.sanitizeHtml(content) + } + } + + $tip.find('.popover-title').html(title) + $tip.find('.popover-content').children().detach().end()[ + typeContent === 'string' ? 'html' : 'append' + ](content) + } else { + $tip.find('.popover-title').text(title) + $tip.find('.popover-content').children().detach().end().text(content) + } + + $tip.removeClass('fade top bottom left right in') + + // IE8 doesn't accept hiding via the `:empty` pseudo selector, we have to do + // this manually by checking the contents. + if (!$tip.find('.popover-title').html()) $tip.find('.popover-title').hide() + } + + Popover.prototype.hasContent = function () { + return this.getTitle() || this.getContent() + } + + Popover.prototype.getContent = function () { + var $e = this.$element + var o = this.options + + return $e.attr('data-content') + || (typeof o.content == 'function' ? + o.content.call($e[0]) : + o.content) + } + + Popover.prototype.arrow = function () { + return (this.$arrow = this.$arrow || this.tip().find('.arrow')) + } + + + // POPOVER PLUGIN DEFINITION + // ========================= + + function Plugin(option) { + return this.each(function () { + var $this = $(this) + var data = $this.data('bs.popover') + var options = typeof option == 'object' && option + + if (!data && /destroy|hide/.test(option)) return + if (!data) $this.data('bs.popover', (data = new Popover(this, options))) + if (typeof option == 'string') data[option]() + }) + } + + var old = $.fn.popover + + $.fn.popover = Plugin + $.fn.popover.Constructor = Popover + + + // POPOVER NO CONFLICT + // =================== + + $.fn.popover.noConflict = function () { + $.fn.popover = old + return this + } + +}(jQuery); diff --git a/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.min.css b/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.min.css new file mode 100644 index 0000000..7d1e81f --- /dev/null +++ b/docs/articles/Using-the-DRR-Template_files/bsTable-3.3.7/bootstrapTable.min.css @@ -0,0 +1,14 @@ +/*! + * Bootstrap v3.3.7 (http://getbootstrap.com) + * Copyright 2011-2018 Twitter, Inc. + * Licensed under MIT 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Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:14:27 -0700 Subject: [PATCH 18/33] remove vignettes (converted them to articles) --- docs/articles/a01_DRR_Background.html | 208 ------- docs/articles/a02_Using_DRR_Template.html | 661 ---------------------- 2 files changed, 869 deletions(-) delete mode 100644 docs/articles/a01_DRR_Background.html delete mode 100644 docs/articles/a02_Using_DRR_Template.html diff --git a/docs/articles/a01_DRR_Background.html b/docs/articles/a01_DRR_Background.html deleted file mode 100644 index a90167b..0000000 --- a/docs/articles/a01_DRR_Background.html +++ /dev/null @@ -1,208 +0,0 @@ - - - - - - - -Getting Started with NPS DRRs • QCkit - - - - - - - - - - - - -
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      - - - - -
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      Getting Started with NPS DRRs

      - - - Source: vignettes/a01_DRR_Background.Rmd - - -
      - - - - -

      Lifecycle: experimental

      -
      -

      DRRs: Background -

      -

      Purpose and Scope of Data Release -Reports

      -

      This is a template is for use when drafting Data Release Reports. -DRRs are created by the National Park Service and provide detailed -descriptions of valuable research datasets, including the methods used -to collect the data and technical analyses supporting the quality of the -measurements. Data Release Reports focus on helping others reuse data -rather than presenting results, testing hypotheses, or presenting new -interpretations and in-depth analyses.

      -
      -
      -

      About this Template -

      -

      This template contains an rmarkdown template file, default folder -structure for project files, and all the necessary template files to -generate an unformatted .docx file. The file will be ingested by -EXstyles, converted to an .xml file and fully formatted according to NPS -branding upon final publication. The goal of this process is to relieve -data producers, managers, and scientists from the burden of formatting -and allow them to focus primarily on content. The content should -document the collection, processing, quality control, of NPS data -packages and evaluate their of utility.

      -

      This template is under active development to improve style and 508 -compliance.

      -
      -
      -

      How to Start a DRR -

      -

      New projects can be established using this template by downloading a -zip file of the template and associated files and folders from: This -Link

      -
        -

      1. How to Use this Template -line-by-line instructions and descriptions for how to use the DRR -Template.

        2. -

      2. The -DRR_Template the file you make changes to to generate a DRR. Note: -this is not a stand-alone file. To create a DRR please download the zipped -template with all associated files and folders.

        3. -

      3. Bibtex -reference file is used if you want to automate your citations. Add -each citation in bibtex format to this file and save it. Add in-text -citations to the DRR Template and your References section will -automatically be generated for you when you knit the .Rmd to .docx. You -should still visually check the final format in the .docx file for -accuracy, completion, and formatting. If you would prefer to manually -format your citations, feel free to continue doing so.

        4. -

      4. DRR_Report -an example of the .docx output file that takes into account your edits -and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the -.Rmd to .docx format in Rstudio).

        5. -
      -
      -
      -

      Examples -

      -

      More will be provided as they are published. The following examples -are post-formatting and should be used as examples for content -generation only.

      -
        -

      1. DRR for -tabular (csv) datasets of hydrologic data used for calculating -hydrologic metrics as a part of the national Environmental Settings -monitoring protocol.

        2. -

      2. DRR for geospatial (file -geodatabase) data continuing custom areas of analysis used for -Environmental Settings monitoring protocol. Report created in Microsoft -Word and ported to the template.

        3. -
      -
      -
      -

      Tips, FAQs, and Errata -

      -

      (coming soon)

      -
      -
      - - - -
      - - - -
      -

      -

      Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

      -
      - -
      -

      -

      Site built with pkgdown 2.0.7.

      -
      - -
      -
      - - - - - - - - diff --git a/docs/articles/a02_Using_DRR_Template.html b/docs/articles/a02_Using_DRR_Template.html deleted file mode 100644 index 18adf6c..0000000 --- a/docs/articles/a02_Using_DRR_Template.html +++ /dev/null @@ -1,661 +0,0 @@ - - - - - - - -Using the DRR Template • QCkit - - - - - - - - - - - - -
      -
      - - - - -
      - -
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      Using the DRR Template

      - - - Source: vignettes/a02_Using_DRR_Template.Rmd - - -
      - - - -
      -

      Overview -

      -

      Data Release Reports (DRRs) are created by the National Park Service -and provide detailed descriptions of valuable research datasets, -including the methods used to collect the data and technical analyses -supporting the quality of the measurements. Data Release Reports focus -on helping others reuse data, rather than presenting results, testing -hypotheses, or presenting new interpretations, methods or in-depth -analyses.

      -

      DRRs are intended to document the processing of fully-QAed data to -their final (QCed) form in a reproducible and transparent manner. DRRs -document the data collection methods and quality standards used to -prepare and review data prior to release. DRRs present the quality of -resultant data in the context of fitness for their intended use.

      -

      Each DRR cites source and resultant datasets that are published -concurrently and cross-referenced. Associated datasets are made publicly -available with the exception of data that must be protected from release -as per NPS and park-specific policies.

      -

      Data packages that are published concurrently with DRRs are intended -to be independently citable scientific works that can serve as the basis -for subsequent analysis and reporting by NPS or third parties.

      -
      -
      -

      Project Set-up -

      -

      The Template is not a stand-alone file but instead has multiple -associated and dependent files. New projects can be established using by -downloading the Zip file associated with the latest release -of the DRR template repository on GitHub.

      -
      -

      Folder Structure -

      -

      General directory contents are as follows (Figure 1):

      -
        -
      • -

        input This is the only location (other than the -template script itself) where you you should manually change or edit -files. This is where data files you need to supply should be placed.

        -
          -
        • -figures If you have figures that are not generated as -part of running this template, place those files here.
          • -
        -
        • -

      • output Do not edit these files. This is where you -can find your final products. Edits to files in this folder will not be -incorporated when you knit the DRR_to_docx.rmd file. Any edits you make -to files in this directory may be overwritten when you knit the -template.

        • -

      • temp Do not edit these files. These are files that -are either used or generated during when you knit the DRR_to_docx.rmd -template. They may include graphics, text, or data.

        • -

      • You can safely ignore most of the other folders (including -docs, my-website, -vignettes,.github) and files (including -_config.yml, .gitignore, -.Rhistory, index.html, and -national-park-service-DRR.csl).

        • -
      -
      -
      -
      -

      Reproducible Reports -

      -

      The following is for users who are using the -DRR_to_docx.rmd template file to generate a data release -report using RMarkdown.

      -
      -

      Standard Code Chunks -

      -

      In addition to the report outline and a description of content for -each section, the template includes four standard code chunks.

      -

      YAML Header:

      -

      The YAML header helps format the DRR. You should not need to edit any -of the YAML header.

      -

      R code chunks:

      -
        -
      • -

        user_edited_parameters. A series of parameters that -are used in the creation of the DRR and may be re-used in metadata and -associated data package construction. You will need to edit these -parameters for each DRR.

        -
          -
        • -title. The title of the Data Release Report.
          • -
        • -reportNumber. This is optional, and should -only be included if publishing in the semi-official DRR series. -Set to NULL if there is no reportNumber.
          • -
        • -DRR_DSRefID. This is the DataStore reference ID for the -report.
          • -
        • -authorNames. A list of the author’s names.
          • -
        • -authorAffiliations. A list of the author’s -affiliations. The order of author affiliations must match the order of -the authors in the authorNames list. Note that the entirety -of each affiliation is enclosed in a single set of quotations. Line -breaks are indicated with the
          tag. Do not worry about indentation -or word wrapping. If two authors have the same affiliation, list the -affiliation twice.
          • -
        • -authorORCID. A list of ORCID iDs for each author in the -format “xxxx-xxxx-xxxx-xxxx”. If an author does not have an ORCID iD, -specify NA (no quotes). The order of ORCID iDs (and NAs) must correspond -to the order of authors in the authorNames list. Future -iterations of the DRR Template will pull ORCID iDs from metadata and -eventually from Active Directory. See ORCID for more information about ORCID -iDs or to register an ORCID iD.
          • -
        • -DRRabstract. The abstract for the DRR (which may be -distinct from the data package abstract). Pay careful attention to -non-standard characters, line breaks, carriage returns, and -curly-quotes. You may find it useful to write the abstract in NotePad or -some other text editor and NOT a word processor (such as Microsoft -Word). Indicate line breaks with and a space between paragraphs - should -you want them - using . The Abstract should succinctly describe the -study, the assay(s) performed, the resulting data, and their reuse -potential, but should not make any claims regarding new scientific -findings. No references are allowed in this section. A good suggested -length for abstracts is less than 250 words.
          • -
        • -dataPackageRefID. DataStore reference ID for the data -package associated with this report. You must have at least one data -package. Eventually, we will automate importing much of this information -from metadata and include the ability to describe multiple data packages -in a single DRR.
          • -
        • -dataPackageTitle. The title of the data package. Must -match the title on DataStore (and metadata).
          • -
        • -dataPackageDescription. A short title/subtitle or short -description for the data package. Must match the data package -metadata.
          • -
        • -dataPackageDOI. Auto-generated, no need to edit or -update. This is the data package DOI. It is based on the DataStore -reference number.
          • -
        • -dataPackage_fileNames. List the file names in your data -package. Do NOT include metadata files. For example, include -“my_data.csv” but do NOT include “my_metadata.xml”.
          • -
        • -dataPackage_fileSizes. List the approximate size of -each data file. Make sure the order of the file sizes corresponds to the -order of file names in dataPackage_fileNames. -dataPackage_fileDescript. A short description of the -corresponding data file that helps distinguish it from other data files. -A good guideline is 10 words or less. This will be used in a table -summary table so brevity is a priority. If you have already created -metadata for your data package in EML format, this should be the same -text as found in the “entityDescription” element for each data -file.
          • -
        -
        • -

      • setup. Most users will not need to edit this code -chunk. There is one code snippet for loading packages; the -RRpackages section is a suite of packages that are used to -assist with reproducible reporting. You may not need these for your -report, but we have included them as part of the base recommended -packages. If you plan to perform you QC as part of the DRR construction -process, you can add a second code snipped to import necessary packages -for your QC process here.

        • -

      • title_do_not_edit. These parameters are -auto-generated based on either the EML you supplied (when that becomes -an option) or the information you’ve already supplied under -“user-edited-parameters”. You really should not need to edit these -parameters.

        • -

      • authors_do_not_edit. There is no need to edit this -chunk. This writes the author names, ORCID iDs, and affiliations to the -.docx document based on information supplied in -user-edited-parameters.

        • -

      • LoadData. Any datasets you need to load can go here. -For most people these datasets are used to generate summary statistics -on proportions of data that were flagged as accepted (A) accepted, -estimated (AE) and rejected (R) during the quality control -process.

        • -

      • FileTable. Do not edit. Generates a table of file -names, sizes, and descriptions in the data package being described by -the DRR.

        • -

      • dataFlaggingTable. This sample code provides a -summary table defining the suggested data flagging codes. There is no -need to edit this table.

        • -

      • Listing. Appendix A, by default is the code listing. -This will generate all code used in generating the report and data -packages. In most cases, code listing is not required. If all QA/QC -processes and data manipulations were performed elsewhere, you should -cite that code (in the methods and references) and leave the “listing -code chunk with the default settings of eval=FALSE and echo=FALSE. If -you have developed custom scripts, you can add those to DataStore with -the reference”Script” and cite them in the DRR.

        • -

      • session-info is the information about the versions -of R and packages used in generating the report. In most cases, you do -not need to report session info (leave the session-info code chunk -parameters in their default state: eval=FALSE). Session and version -information is only necessary if you have set the “Listing” code chunk -in appendix A to eval=TRUE. In that case, change the “session info” code -chunk parameters to eval=TRUE.

        • -
      -
      -
      -

      Citations -

      -
      -

      Automating Citations -

      -

      To automate citations, add the citation in bibtex format to the file -“references.bib”. You can manually copy and paste the bibtex for each -reference in, or you can search for it from within Rstudio. From within -Rstudio, make sure you are editing this document using the “Visual” view -(as opposed to “Source”). From the “Insert” drop-down menu, select “@ -Citation…” (shortcut: Cntrl-Shift-F8). This will open a Graphical User -Interface (GUI) tool where you can view all the citations in your -reference.bib file as well as search multiple databases for references, -automatically insert the bibtex for the reference into your -references.bib file (and customize the unique identifier if you’d like) -and insert the in-text citation into the DRR template.

      -

      Once a reference is in your references.bib file, using the Visual -view of the template you can simply type the ‘@’ symbol and select which -reference to insert in the text.

      -

      If you need to edit how the citation is displayed after inserting it -into the text, switch back to the “Source” view. Each bibtex citation -should start with a unique identifier; the example reference in the -supplied references.bib file has the unique identifier “@article{Scott1994,”. Using the “Source” view in -Rstudio, insert the reference in your text, by combining the “at” symbol -with the portion of the unique identifier after the curly bracket: @Scott1994 .

      - ---- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      SyntaxResult
      -@Scott1994 concludes that …Scott et al., 1994 concludes that …
      -@Scott1994[p.33] concludes that …Scott (1994, p.33) concludes that …
      … end of sentence [@Scott1994].… end of sentence (Scott et al., 1994).
      … end of sentence [see @Scott1994,p.33].… end of sentence (see Scott et al. 1994,p.33).
      delineate multiple authors with colon: -[@Scott1994; @aberdeen1958] -delineate multiple authors with colon: (Scott et al., 1994; -Aberdeen, 1958)
      Scott et al. conclude that …. [-@Scott1994] -Scott et al. conclude that . . . (1994)
      -

      The full citation, properly formatted, will be included in a -“References” section at the end of the rendered MS Word document. . . -though it is also worth visually inspecting the .docx for citation -completeness and formatting.

      -
      -
      -

      Manual citations -

      -

      If you would like to format your citations manually, please feel free -to do so. Make sure to look at the References section for how to -properly format each citation type.

      -
      -
      -
      -
      -

      Editing the Text -

      -

      The following text in the body of the DRR template will need to be -edited to customize it to each data package.

      -
      -

      Data Records -

      -

      This is a required section and consists of two subheadings:

      -
        -

      • Data inputs - an optional subsection used to -describe datasets that the data package is based on if it is a -re-analysis, reorganization, or re-integration of prevously existing -data sets.

        • -

      • Summary of datasts created - this is a required -section used to explain each data record associated with the work (for -instance, a data package), including the DOI indicating where this -information is stored. It shoudl also provide an overview of the data -files and their formats. Each external data record should be -cited.

        • -
      -

      Sample text is included that uses r code to incorporate previously -specified parameters such as the data package title, file names, and -DOI.

      -

      A code for a sample table summarizing the contents of the data -package (except the metadata) is provided.

      -
      -
      -

      Data Quality -

      -

      This is a required section. and the text includes multiple suggested -text elements and code for an example table defining data flagging -codes. Near future development here will incorporate additional optional -tables to summarize the data quality based on the flags in the data -sets.

      -
      -
      -

      Usage Notes -

      -

      This is a required section that should contain brief instructions to -assist other researchers with reuse of the data. This may include -discussion of software packages (with appropriate citations) that are -suitable for analysing the assay data files, suggested downstream -processing steps (e.g. normalization, etc.), or tips for integrating or -comparing the data records with other datasets. Authors are encouraged -to provide code, programs or data-processing workflows if they may help -others understand or use the data.

      -
      -
      -

      Methods -

      -

      This is a required section that cites previous methods used but -should also be detailed enough in describing data production including -the experimental design, data acquisition assays, and any computational -processing (e.g. normalization, QA, QC) such that others can understand -the methods without referring to associated publications.

      -

      Optional sub-sections within the methods include:

      -
        -
      • Data Collection and Sampling
        • -
      • Additional Data Sources
        • -
      • Data Processing
        • -
      • Code availability
        • -
      -
      -
      -

      References -

      -

      This required section includes full bibliographic references for each -paper, chapter, book, data package, dataset, protocol, etc cited within -the DRR.

      -

      There are numerous examples of proper formatting for each of these. -Future versions of the DRR will enable automatic reference formatting -given a correctly formatted bibtex file with the references (.bib).

      -
      -
      -

      Figures -

      -

      Figures should be inserted using code chunks in all cases so that -figure settings can be set in the chunk header. The chunk header should -at a minimum set the fig.align parameter to “center” and the specify the -figure caption (fig.cap parameter). Inserting figures this way will -ensure that the caption is properly formatted and it will apply copy the -caption to the figure’s “alt text” tag, making it 508-compliant.

      -

      For example:

      -
      ```{r fig2, echo=FALSE, out.width="70%", fig.align="center", fig.cap="Example general workflow to incude in the methods section."} 
-knitr::include_graphics("ProcessingWorkflow.png")
-```
      -

      Results in:

      -
      -
      -

      Tables -

      -

      Tables should be created using the kable function. Specifying the -caption in the kable function call (as opposed to inline markdown text) -will ensure that the caption is appropriately formatted.

      -

      For example:

      -
      ```{r Table2, echo=FALSE}
-c1<-c("Protocol1","Protocol2","Protocol3")
-c2<-c("Park Unit 1","Park Unit 2","Park Unit 3")
-c3<-c("Site 1","Site 2","Site 3")
-c4<-c("Date 1","Date 2","Date 3")
-c5<-c("GEOXXXXX","GEOXXXXX","GEOXXXXX")
-Table2<-data.frame(c1,c2,c3,c4,c5)
-
-kable(Table2, 
-      col.names=c("Subjects","Park Units","Locations","Sampling Dates","Data"),
-      caption="**Table 1.** Monitoring study example Data Records table.") %>%
-  kable_styling(bootstrap_options = c("striped", "hover", "condensed", "responsive"),full_width=F)
-```
      -

      Results in:

      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      -Table 1. Monitoring study example Data Records table. -
      -Subjects - -Park Units - -Locations - -Sampling Dates - -Data -
      -Protocol1 - -Park Unit 1 - -Site 1 - -Date 1 - -GEOXXXXX -
      -Protocol2 - -Park Unit 2 - -Site 2 - -Date 2 - -GEOXXXXX -
      -Protocol3 - -Park Unit 3 - -Site 3 - -Date 3 - -GEOXXXXX -
      -
      -
      -
      -

      Publishing DRRs -

      -
      -

      Report Numbers -

      -

      Because data release reports and associated data packages are -cross-referential, report numbers are typically assigned early in data -processing and quality evaluation.

      -
        -

      • DataStore Reference Numbers. When developing a -report and data packages, DataStore references should be created as -early in the process as practicable. While the report and data packages -are in development, these should not be activated.

        • -

      • Report Numbers. If you are planning to publish a -Data Release Report with an official DRR number, please contact the IMD -Deputy Chief with the DataStore reference number associated with the -DRR.

        • -

      • Persistent Identifiers. Digital object -identifiers (DOIs) will be assigned to all DRRs and concurrently -published data packages. DOIs will resolve to a DataStore Reference; -DOIs are reserved when a draft reference is initiated in DataStore. They -are not activated until the publication process, including relevant -review, is complete.

        • -
      -

      DRR DOIs have the format: https://doi.org/10.36967/xxxxxxx

      -

      Data package DOIs have the format: https://doi.org/10.57830/xxxxxxx

      -

      Where the “xxxxxx” is the 7-digit DataStore reference number.

      -
      -
      -

      Liability Statements -

      -

      Under no circumstances should reports and associated data packages or -metadata published in the DRR series contain disclaimers or text that -suggests that the work does not meet scientific integrity or information -quality standards of the National Park Service. The following -disclaimers are suitable for use, depending on whether the data are -provisional or final (or approved or certified).

      -
      -

      For approved & published data sets: “Unless -otherwise stated, all data, metadata and related materials are -considered to satisfy the quality standards relative to the purpose for -which the data were collected. Although these data and associated -metadata have been reviewed for accuracy and completeness and approved -for release by the National Park Service Inventory and Monitoring -Division, no warranty expressed or implied is made regarding the display -or utility of the data for other purposes, nor on all computer systems, -nor shall the act of distribution constitute any such warranty.”

      -
      -
      -

      For provisional data: “The data you have secured -from the National Park Service (NPS) database identified as [database -name] have not received approval for release by the NPS Inventory and -Monitoring Division, and as such are provisional and subject to -revision. The data are released on the condition that neither the NPS -nor the U.S. Government shall be held liable for any damages resulting -from its authorized or unauthorized use.”

      -
      -
      -
      -
      - - - -
      - - - -
      -

      -

      Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

      -
      - -
      -

      -

      Site built with pkgdown 2.0.7.

      -
      - -
      -
      - - - - - - - - From aff5f891743e4c5aac93418f0de96c966848d07d Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:14:53 -0700 Subject: [PATCH 19/33] updated via devtools::document and pkgdown --- docs/404.html | 4 +- docs/LICENSE-text.html | 4 +- docs/LICENSE.html | 4 +- docs/articles/QCkit.html | 4 +- .../bsTable-3.3.7/bootstrapTable.js | 801 ------------------ .../bsTable-3.3.7/bootstrapTable.min.css | 14 - .../kePrint-0.0.1/kePrint.js | 8 - .../lightable-0.0.1/lightable.css | 272 ------ docs/articles/index.html | 8 +- docs/authors.html | 4 +- docs/index.html | 4 +- docs/news/index.html | 4 +- docs/pkgdown.yml | 6 +- docs/reference/DC_col_check.html | 4 +- docs/reference/QCkit-package.html | 4 +- docs/reference/check_dc_cols.html | 4 +- docs/reference/check_te.html | 4 +- docs/reference/convert_datetime_format.html | 4 +- docs/reference/convert_long_to_utm.html | 4 +- docs/reference/convert_utm_to_ll.html | 4 +- docs/reference/create_datastore_script.html | 8 +- docs/reference/fix_utc_offset.html | 4 +- docs/reference/fuzz_location.html | 4 +- docs/reference/get_custom_flags.html | 6 +- docs/reference/get_dc_flags.html | 6 +- docs/reference/get_df_flags.html | 6 +- docs/reference/get_dp_flags.html | 6 +- docs/reference/get_elevation.html | 4 +- docs/reference/get_park_polygon.html | 4 +- docs/reference/get_taxon_rank.html | 4 +- docs/reference/get_utm_zone.html | 4 +- docs/reference/index.html | 4 +- docs/reference/long2UTM.html | 4 +- docs/reference/order_cols.html | 4 +- docs/reference/replace_blanks.html | 6 +- docs/reference/te_check.html | 4 +- docs/reference/utm_to_ll.html | 4 +- docs/reference/validate_coord.html | 4 +- docs/sitemap.xml | 8 +- 39 files changed, 82 insertions(+), 1177 deletions(-) delete mode 100644 docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js delete mode 100644 docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.min.css delete mode 100644 docs/articles/a02_Using_DRR_Template_files/kePrint-0.0.1/kePrint.js delete mode 100644 docs/articles/a02_Using_DRR_Template_files/lightable-0.0.1/lightable.css diff --git a/docs/404.html b/docs/404.html index 1524df3..4de547b 100644 --- a/docs/404.html +++ b/docs/404.html @@ -52,10 +52,10 @@ diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index b053670..0852fdf 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -35,10 +35,10 @@
    1. diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 79ca434..470e334 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -35,10 +35,10 @@
    2. diff --git a/docs/articles/QCkit.html b/docs/articles/QCkit.html index e3cd71b..dd7b701 100644 --- a/docs/articles/QCkit.html +++ b/docs/articles/QCkit.html @@ -53,10 +53,10 @@
      3. diff --git a/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js b/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js deleted file mode 100644 index 0c83d3b..0000000 --- a/docs/articles/a02_Using_DRR_Template_files/bsTable-3.3.7/bootstrapTable.js +++ /dev/null @@ -1,801 +0,0 @@ -/* ======================================================================== - * Bootstrap: tooltip.js v3.4.1 - * https://getbootstrap.com/docs/3.4/javascript/#tooltip - * Inspired by the original jQuery.tipsy by Jason Frame - * ======================================================================== - * Copyright 2011-2019 Twitter, Inc. - * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) - * ======================================================================== */ - -+function ($) { - 'use strict'; - - var DISALLOWED_ATTRIBUTES = ['sanitize', 'whiteList', 'sanitizeFn'] - - var uriAttrs = [ - 'background', - 'cite', - 'href', - 'itemtype', - 'longdesc', - 'poster', - 'src', - 'xlink:href' - ] - - var ARIA_ATTRIBUTE_PATTERN = /^aria-[\w-]*$/i - - var DefaultWhitelist = { - // Global attributes allowed on any supplied element below. - '*': ['class', 'dir', 'id', 'lang', 'role', ARIA_ATTRIBUTE_PATTERN], - a: ['target', 'href', 'title', 'rel'], - area: [], - b: [], - br: [], - col: [], - code: [], - div: [], - em: [], - hr: [], - h1: [], - h2: [], - h3: [], - h4: [], - h5: [], - h6: [], - i: [], - img: ['src', 'alt', 'title', 'width', 'height'], - li: [], - ol: [], - p: [], - pre: [], - s: [], - small: [], - span: [], - sub: [], - sup: [], - strong: [], - u: [], - ul: [] - } - - /** - * A pattern that recognizes a commonly useful subset of URLs that are safe. - * - * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts - */ - var SAFE_URL_PATTERN = /^(?:(?:https?|mailto|ftp|tel|file):|[^&:/?#]*(?:[/?#]|$))/gi - - /** - * A pattern that matches safe data URLs. Only matches image, video and audio types. - * - * Shoutout to Angular 7 https://github.com/angular/angular/blob/7.2.4/packages/core/src/sanitization/url_sanitizer.ts - */ - var DATA_URL_PATTERN = /^data:(?:image\/(?:bmp|gif|jpeg|jpg|png|tiff|webp)|video\/(?:mpeg|mp4|ogg|webm)|audio\/(?:mp3|oga|ogg|opus));base64,[a-z0-9+/]+=*$/i - - function allowedAttribute(attr, allowedAttributeList) { - var attrName = attr.nodeName.toLowerCase() - - if ($.inArray(attrName, allowedAttributeList) !== -1) { - if ($.inArray(attrName, uriAttrs) !== -1) { - return Boolean(attr.nodeValue.match(SAFE_URL_PATTERN) || attr.nodeValue.match(DATA_URL_PATTERN)) - } - - return true - } - - var regExp = $(allowedAttributeList).filter(function (index, value) { - return value instanceof RegExp - }) - - // Check if a regular expression validates the attribute. - for (var i = 0, l = regExp.length; i < l; i++) { - if (attrName.match(regExp[i])) { - return true - } - } - - return false - } - - function sanitizeHtml(unsafeHtml, whiteList, sanitizeFn) { - if (unsafeHtml.length === 0) { - return unsafeHtml - } - - if (sanitizeFn && typeof sanitizeFn === 'function') { - return sanitizeFn(unsafeHtml) - } - - // IE 8 and below don't support createHTMLDocument - if (!document.implementation || !document.implementation.createHTMLDocument) { - return unsafeHtml - } - - var createdDocument = document.implementation.createHTMLDocument('sanitization') - createdDocument.body.innerHTML = unsafeHtml - - var whitelistKeys = $.map(whiteList, function (el, i) { return i }) - var elements = $(createdDocument.body).find('*') - - for (var i = 0, len = elements.length; i < len; i++) { - var el = elements[i] - var elName = el.nodeName.toLowerCase() - - if ($.inArray(elName, whitelistKeys) === -1) { - el.parentNode.removeChild(el) - - continue - } - - var attributeList = $.map(el.attributes, function (el) { return el }) - var whitelistedAttributes = [].concat(whiteList['*'] || [], whiteList[elName] || []) - - for (var j = 0, len2 = attributeList.length; j < len2; j++) { - if (!allowedAttribute(attributeList[j], whitelistedAttributes)) { - el.removeAttribute(attributeList[j].nodeName) - } - } - } - - return createdDocument.body.innerHTML - } - - // TOOLTIP PUBLIC CLASS DEFINITION - // =============================== - - var Tooltip = function (element, options) { - this.type = null - this.options = null - this.enabled = null - this.timeout = null - this.hoverState = null - this.$element = null - this.inState = null - - this.init('tooltip', element, options) - } - - Tooltip.VERSION = '3.4.1' - - Tooltip.TRANSITION_DURATION = 150 - - Tooltip.DEFAULTS = { - animation: true, - placement: 'top', - selector: false, - template: '', - trigger: 'hover focus', - title: '', - delay: 0, - html: false, - container: false, - viewport: { - selector: 'body', - padding: 0 - }, - sanitize : true, - sanitizeFn : null, - whiteList : DefaultWhitelist - } - - Tooltip.prototype.init = function (type, element, options) { - this.enabled = true - this.type = type - this.$element = $(element) - this.options = this.getOptions(options) - this.$viewport = this.options.viewport && $(document).find($.isFunction(this.options.viewport) ? this.options.viewport.call(this, this.$element) : (this.options.viewport.selector || this.options.viewport)) - this.inState = { click: false, hover: false, focus: false } - - if (this.$element[0] instanceof document.constructor && !this.options.selector) { - throw new Error('`selector` option must be specified when initializing ' + this.type + ' on the window.document object!') - } - - var triggers = this.options.trigger.split(' ') - - for (var i = triggers.length; i--;) { - var trigger = triggers[i] - - if (trigger == 'click') { - this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this)) - } else if (trigger != 'manual') { - var eventIn = trigger == 'hover' ? 'mouseenter' : 'focusin' - var eventOut = trigger == 'hover' ? 'mouseleave' : 'focusout' - - this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this)) - this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this)) - } - } - - this.options.selector ? - (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) : - this.fixTitle() - } - - Tooltip.prototype.getDefaults = function () { - return Tooltip.DEFAULTS - } - - Tooltip.prototype.getOptions = function (options) { - var dataAttributes = this.$element.data() - - for (var dataAttr in dataAttributes) { - if (dataAttributes.hasOwnProperty(dataAttr) && $.inArray(dataAttr, DISALLOWED_ATTRIBUTES) !== -1) { - delete dataAttributes[dataAttr] - } - } - - options = $.extend({}, this.getDefaults(), dataAttributes, options) - - if (options.delay && typeof options.delay == 'number') { - options.delay = { - show: options.delay, - hide: options.delay - } - } - - if (options.sanitize) { - options.template = sanitizeHtml(options.template, options.whiteList, options.sanitizeFn) - } - - return options - } - - Tooltip.prototype.getDelegateOptions = function () { - var options = {} - var defaults = this.getDefaults() - - this._options && $.each(this._options, function (key, value) { - if (defaults[key] != value) options[key] = value - }) - - return options - } - - Tooltip.prototype.enter = function (obj) { - var self = obj instanceof this.constructor ? - obj : $(obj.currentTarget).data('bs.' + this.type) - - if (!self) { - self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) - $(obj.currentTarget).data('bs.' + this.type, self) - } - - if (obj instanceof $.Event) { - self.inState[obj.type == 'focusin' ? 'focus' : 'hover'] = true - } - - if (self.tip().hasClass('in') || self.hoverState == 'in') { - self.hoverState = 'in' - return - } - - clearTimeout(self.timeout) - - self.hoverState = 'in' - - if (!self.options.delay || !self.options.delay.show) return self.show() - - self.timeout = setTimeout(function () { - if (self.hoverState == 'in') self.show() - }, self.options.delay.show) - } - - Tooltip.prototype.isInStateTrue = function () { - for (var key in this.inState) { - if (this.inState[key]) return true - } - - return false - } - - Tooltip.prototype.leave = function (obj) { - var self = obj instanceof this.constructor ? - obj : $(obj.currentTarget).data('bs.' + this.type) - - if (!self) { - self = new this.constructor(obj.currentTarget, this.getDelegateOptions()) - $(obj.currentTarget).data('bs.' + this.type, self) - } - - if (obj instanceof $.Event) { - self.inState[obj.type == 'focusout' ? 'focus' : 'hover'] = false - } - - if (self.isInStateTrue()) return - - clearTimeout(self.timeout) - - self.hoverState = 'out' - - if (!self.options.delay || !self.options.delay.hide) return self.hide() - - self.timeout = setTimeout(function () { - if (self.hoverState == 'out') self.hide() - }, self.options.delay.hide) - } - - Tooltip.prototype.show = function () { - var e = $.Event('show.bs.' + this.type) - - if (this.hasContent() && this.enabled) { - this.$element.trigger(e) - - var inDom = $.contains(this.$element[0].ownerDocument.documentElement, this.$element[0]) - if (e.isDefaultPrevented() || !inDom) return - var that = this - - var $tip = this.tip() - - var tipId = this.getUID(this.type) - - this.setContent() - $tip.attr('id', tipId) - this.$element.attr('aria-describedby', tipId) - - if (this.options.animation) $tip.addClass('fade') - - var placement = typeof this.options.placement == 'function' ? - this.options.placement.call(this, $tip[0], this.$element[0]) : - this.options.placement - - var autoToken = /\s?auto?\s?/i - var autoPlace = autoToken.test(placement) - if (autoPlace) placement = placement.replace(autoToken, '') || 'top' - - $tip - .detach() - .css({ top: 0, left: 0, display: 'block' }) - .addClass(placement) - .data('bs.' + this.type, this) - - this.options.container ? $tip.appendTo($(document).find(this.options.container)) : $tip.insertAfter(this.$element) - this.$element.trigger('inserted.bs.' + this.type) - - var pos = this.getPosition() - var actualWidth = $tip[0].offsetWidth - var actualHeight = $tip[0].offsetHeight - - if (autoPlace) { - var orgPlacement = placement - var viewportDim = this.getPosition(this.$viewport) - - placement = placement == 'bottom' && pos.bottom + actualHeight > viewportDim.bottom ? 'top' : - placement == 'top' && pos.top - actualHeight < viewportDim.top ? 'bottom' : - placement == 'right' && pos.right + actualWidth > viewportDim.width ? 'left' : - placement == 'left' && pos.left - actualWidth < viewportDim.left ? 'right' : - placement - - $tip - .removeClass(orgPlacement) - .addClass(placement) - } - - var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight) - - this.applyPlacement(calculatedOffset, placement) - - var complete = function () { - var prevHoverState = that.hoverState - that.$element.trigger('shown.bs.' + that.type) - that.hoverState = null - - if (prevHoverState == 'out') that.leave(that) - } - - $.support.transition && this.$tip.hasClass('fade') ? - $tip - .one('bsTransitionEnd', complete) - .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : - complete() - } - } - - Tooltip.prototype.applyPlacement = function (offset, placement) { - var $tip = this.tip() - var width = $tip[0].offsetWidth - var height = $tip[0].offsetHeight - - // manually read margins because getBoundingClientRect includes difference - var marginTop = parseInt($tip.css('margin-top'), 10) - var marginLeft = parseInt($tip.css('margin-left'), 10) - - // we must check for NaN for ie 8/9 - if (isNaN(marginTop)) marginTop = 0 - if (isNaN(marginLeft)) marginLeft = 0 - - offset.top += marginTop - offset.left += marginLeft - - // $.fn.offset doesn't round pixel values - // so we use setOffset directly with our own function B-0 - $.offset.setOffset($tip[0], $.extend({ - using: function (props) { - $tip.css({ - top: Math.round(props.top), - left: Math.round(props.left) - }) - } - }, offset), 0) - - $tip.addClass('in') - - // check to see if placing tip in new offset caused the tip to resize itself - var actualWidth = $tip[0].offsetWidth - var actualHeight = $tip[0].offsetHeight - - if (placement == 'top' && actualHeight != height) { - offset.top = offset.top + height - actualHeight - } - - var delta = this.getViewportAdjustedDelta(placement, offset, actualWidth, actualHeight) - - if (delta.left) offset.left += delta.left - else offset.top += delta.top - - var isVertical = /top|bottom/.test(placement) - var arrowDelta = isVertical ? delta.left * 2 - width + actualWidth : delta.top * 2 - height + actualHeight - var arrowOffsetPosition = isVertical ? 'offsetWidth' : 'offsetHeight' - - $tip.offset(offset) - this.replaceArrow(arrowDelta, $tip[0][arrowOffsetPosition], isVertical) - } - - Tooltip.prototype.replaceArrow = function (delta, dimension, isVertical) { - this.arrow() - .css(isVertical ? 'left' : 'top', 50 * (1 - delta / dimension) + '%') - .css(isVertical ? 'top' : 'left', '') - } - - Tooltip.prototype.setContent = function () { - var $tip = this.tip() - var title = this.getTitle() - - if (this.options.html) { - if (this.options.sanitize) { - title = sanitizeHtml(title, this.options.whiteList, this.options.sanitizeFn) - } - - $tip.find('.tooltip-inner').html(title) - } else { - $tip.find('.tooltip-inner').text(title) - } - - $tip.removeClass('fade in top bottom left right') - } - - Tooltip.prototype.hide = function (callback) { - var that = this - var $tip = $(this.$tip) - var e = $.Event('hide.bs.' + this.type) - - function complete() { - if (that.hoverState != 'in') $tip.detach() - if (that.$element) { // TODO: Check whether guarding this code with this `if` is really necessary. - that.$element - .removeAttr('aria-describedby') - .trigger('hidden.bs.' + that.type) - } - callback && callback() - } - - this.$element.trigger(e) - - if (e.isDefaultPrevented()) return - - $tip.removeClass('in') - - $.support.transition && $tip.hasClass('fade') ? - $tip - .one('bsTransitionEnd', complete) - .emulateTransitionEnd(Tooltip.TRANSITION_DURATION) : - complete() - - this.hoverState = null - - return this - } - - Tooltip.prototype.fixTitle = function () { - var $e = this.$element - if ($e.attr('title') || typeof $e.attr('data-original-title') != 'string') { - $e.attr('data-original-title', $e.attr('title') || '').attr('title', '') - } - } - - Tooltip.prototype.hasContent = function () { - return this.getTitle() - } - - Tooltip.prototype.getPosition = function ($element) { - $element = $element || this.$element - - var el = $element[0] - var isBody = el.tagName == 'BODY' - - var elRect = el.getBoundingClientRect() - if (elRect.width == null) { - // width and height are missing in IE8, so compute them manually; see https://github.com/twbs/bootstrap/issues/14093 - elRect = $.extend({}, elRect, { width: elRect.right - elRect.left, height: elRect.bottom - elRect.top }) - } - var isSvg = window.SVGElement && el instanceof window.SVGElement - // Avoid using $.offset() on SVGs since it gives incorrect results in jQuery 3. - // See https://github.com/twbs/bootstrap/issues/20280 - var elOffset = isBody ? { top: 0, left: 0 } : (isSvg ? null : $element.offset()) - var scroll = { scroll: isBody ? document.documentElement.scrollTop || document.body.scrollTop : $element.scrollTop() } - var outerDims = isBody ? { width: $(window).width(), height: $(window).height() } : null - - return $.extend({}, elRect, scroll, outerDims, elOffset) - } - - Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) { - return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } : - placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } : - placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } : - /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width } - - } - - Tooltip.prototype.getViewportAdjustedDelta = function (placement, pos, actualWidth, actualHeight) { - var delta = { top: 0, left: 0 } - if (!this.$viewport) return delta - - var viewportPadding = this.options.viewport && this.options.viewport.padding || 0 - var viewportDimensions = this.getPosition(this.$viewport) - - if (/right|left/.test(placement)) { - var topEdgeOffset = pos.top - viewportPadding - viewportDimensions.scroll - var bottomEdgeOffset = pos.top + viewportPadding - viewportDimensions.scroll + actualHeight - if (topEdgeOffset < viewportDimensions.top) { // top overflow - delta.top = viewportDimensions.top - topEdgeOffset - } else if (bottomEdgeOffset > viewportDimensions.top + viewportDimensions.height) { // bottom overflow - delta.top = viewportDimensions.top + viewportDimensions.height - bottomEdgeOffset - } - } else { - var leftEdgeOffset = pos.left - viewportPadding - var rightEdgeOffset = pos.left + viewportPadding + actualWidth - if (leftEdgeOffset < viewportDimensions.left) { // left overflow - delta.left = viewportDimensions.left - leftEdgeOffset - } else if (rightEdgeOffset > viewportDimensions.right) { // right overflow - delta.left = viewportDimensions.left + viewportDimensions.width - rightEdgeOffset - } - } - - return delta - } - - Tooltip.prototype.getTitle = function () { - var title - var $e = this.$element - var o = this.options - - title = $e.attr('data-original-title') - || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title) - - return title - } - - Tooltip.prototype.getUID = function (prefix) { - do prefix += ~~(Math.random() * 1000000) - while (document.getElementById(prefix)) - return prefix - } - - Tooltip.prototype.tip = function () { - if (!this.$tip) { - this.$tip = $(this.options.template) - if (this.$tip.length != 1) { - throw new Error(this.type + ' `template` option must consist of exactly 1 top-level element!') - } - } - return this.$tip - } - - Tooltip.prototype.arrow = function () { - return (this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow')) - } - - Tooltip.prototype.enable = function () { - this.enabled = true - } - - Tooltip.prototype.disable = function () { - this.enabled = false - } - - Tooltip.prototype.toggleEnabled = function () { - this.enabled = !this.enabled - } - - Tooltip.prototype.toggle = function (e) { - var self = this - if (e) { - self = $(e.currentTarget).data('bs.' + this.type) - if (!self) { - self = new this.constructor(e.currentTarget, this.getDelegateOptions()) - $(e.currentTarget).data('bs.' + this.type, self) - } - } - - if (e) { - self.inState.click = !self.inState.click - if (self.isInStateTrue()) self.enter(self) - else self.leave(self) - } else { - self.tip().hasClass('in') ? 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td { - border: 0; -} - -.lightable-material.lightable-striped thead tr:last-child th { - border-bottom: 1px solid #ddd; -} - -.lightable-material-dark { - min-width: 100%; - white-space: nowrap; - table-layout: fixed; - font-family: Roboto, sans-serif; - border: 1px solid #FFFFFF12; - border-collapse: collapse; - margin-bottom: 10px; - background-color: #363640; -} - -.lightable-material-dark tfoot tr td { - border: 0; -} - -.lightable-material-dark tfoot tr:first-child td { - border-top: 1px solid #FFFFFF12; -} - -.lightable-material-dark th { - height: 56px; - padding-left: 16px; - padding-right: 16px; - color: #FFFFFF60; -} - -.lightable-material-dark td { - height: 52px; - padding-left: 16px; - padding-right: 16px; - color: #FFFFFF; - border-top: 1px solid #FFFFFF12; -} - -.lightable-material-dark.lightable-hover tbody tr:hover { - background-color: #FFFFFF12; -} - -.lightable-material-dark.lightable-striped tbody tr:nth-child(even) { - background-color: #FFFFFF12; -} - -.lightable-material-dark.lightable-striped tbody td { - border: 0; -} - -.lightable-material-dark.lightable-striped thead tr:last-child th { - border-bottom: 1px solid #FFFFFF12; -} - -.lightable-paper { - width: 100%; - margin-bottom: 10px; - color: #444; -} - -.lightable-paper tfoot tr td { - border: 0; -} - -.lightable-paper tfoot tr:first-child td { - border-top: 1px solid #00000020; -} - -.lightable-paper thead tr:last-child th { - color: #666; - vertical-align: bottom; - border-bottom: 1px solid #00000020; - line-height: 1.15em; - padding: 10px 5px; -} - -.lightable-paper td { - vertical-align: middle; - border-bottom: 1px solid #00000010; - line-height: 1.15em; - padding: 7px 5px; -} - -.lightable-paper.lightable-hover tbody tr:hover { - background-color: #F9EEC1; -} - -.lightable-paper.lightable-striped tbody tr:nth-child(even) { - background-color: #00000008; -} - -.lightable-paper.lightable-striped tbody td { - border: 0; -} - diff --git a/docs/articles/index.html b/docs/articles/index.html index ff73649..fbe9abd 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -35,10 +35,10 @@
    3. @@ -66,9 +66,9 @@

      Articles

      All vignettes

      -
      Getting Started with NPS DRRs
      +
      Starting a DRR
      -
      Using the DRR Template
      +
      Using the DRR Template
      QCkit
      diff --git a/docs/authors.html b/docs/authors.html index e1aa5ec..0b082d9 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -35,10 +35,10 @@
    4. diff --git a/docs/index.html b/docs/index.html index 8c5642e..81df1d3 100644 --- a/docs/index.html +++ b/docs/index.html @@ -53,10 +53,10 @@
      5. diff --git a/docs/news/index.html b/docs/news/index.html index 00a81ba..f95a0e0 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -35,10 +35,10 @@
    5. diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index fab3e6f..aa98a89 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,8 +2,8 @@ pandoc: 3.1.1 pkgdown: 2.0.7 pkgdown_sha: ~ articles: - a01_DRR_Background: a01_DRR_Background.html - a02_Using_DRR_Template: a02_Using_DRR_Template.html + Starting-a-DRR: Starting-a-DRR.html + Using-the-DRR-Template: Using-the-DRR-Template.html QCkit: QCkit.html -last_built: 2024-02-08T03:50Z +last_built: 2024-02-09T15:07Z diff --git a/docs/reference/DC_col_check.html b/docs/reference/DC_col_check.html index 5bb027d..7b50d51 100644 --- a/docs/reference/DC_col_check.html +++ b/docs/reference/DC_col_check.html @@ -37,10 +37,10 @@
    6. diff --git a/docs/reference/QCkit-package.html b/docs/reference/QCkit-package.html index 73c5483..1947b61 100644 --- a/docs/reference/QCkit-package.html +++ b/docs/reference/QCkit-package.html @@ -35,10 +35,10 @@
    7. diff --git a/docs/reference/check_dc_cols.html b/docs/reference/check_dc_cols.html index c9d882b..335ce81 100644 --- a/docs/reference/check_dc_cols.html +++ b/docs/reference/check_dc_cols.html @@ -35,10 +35,10 @@
    8. diff --git a/docs/reference/check_te.html b/docs/reference/check_te.html index 04dbc29..f8544bc 100644 --- a/docs/reference/check_te.html +++ b/docs/reference/check_te.html @@ -35,10 +35,10 @@
    9. diff --git a/docs/reference/convert_datetime_format.html b/docs/reference/convert_datetime_format.html index 2cbe245..ebded98 100644 --- a/docs/reference/convert_datetime_format.html +++ b/docs/reference/convert_datetime_format.html @@ -35,10 +35,10 @@
    10. diff --git a/docs/reference/convert_long_to_utm.html b/docs/reference/convert_long_to_utm.html index 41f8d07..df4f7ca 100644 --- a/docs/reference/convert_long_to_utm.html +++ b/docs/reference/convert_long_to_utm.html @@ -39,10 +39,10 @@
    11. diff --git a/docs/reference/convert_utm_to_ll.html b/docs/reference/convert_utm_to_ll.html index 5b3c05e..0b06cc1 100644 --- a/docs/reference/convert_utm_to_ll.html +++ b/docs/reference/convert_utm_to_ll.html @@ -39,10 +39,10 @@
    12. diff --git a/docs/reference/create_datastore_script.html b/docs/reference/create_datastore_script.html index 3adb7d5..1f1b46c 100644 --- a/docs/reference/create_datastore_script.html +++ b/docs/reference/create_datastore_script.html @@ -40,10 +40,10 @@
    13. @@ -82,7 +82,7 @@

      Turn a GitHub release into a DataStore Script Reference

      create_datastore_script(
   owner,
   repo,
-  path = here::here(),
+  path = here::here(),
   force = FALSE,
   dev = FALSE
 )
      @@ -99,7 +99,7 @@

      Arguments

      path
      -

      String. The location where the release .zip from GitHub should be downloaded to (and uploaded from). Defaults to the working directory of the R Project (i.e. here::here()).

      +

      String. The location where the release .zip from GitHub should be downloaded to (and uploaded from). Defaults to the working directory of the R Project (i.e. here::here()).

      force
      diff --git a/docs/reference/fix_utc_offset.html b/docs/reference/fix_utc_offset.html index 556a268..75f438c 100644 --- a/docs/reference/fix_utc_offset.html +++ b/docs/reference/fix_utc_offset.html @@ -35,10 +35,10 @@
    14. diff --git a/docs/reference/fuzz_location.html b/docs/reference/fuzz_location.html index 1049dcc..b68bbef 100644 --- a/docs/reference/fuzz_location.html +++ b/docs/reference/fuzz_location.html @@ -41,10 +41,10 @@
    15. diff --git a/docs/reference/get_custom_flags.html b/docs/reference/get_custom_flags.html index 5c997c3..f413d62 100644 --- a/docs/reference/get_custom_flags.html +++ b/docs/reference/get_custom_flags.html @@ -50,10 +50,10 @@
    16. @@ -100,7 +100,7 @@

      Creates dataframe(s) summarizing data quality

      get_custom_flags(
-  directory = here::here(),
+  directory = here::here(),
   cols = (""),
   output = c("all", "files", "columns")
 )
      diff --git a/docs/reference/get_dc_flags.html b/docs/reference/get_dc_flags.html index e581f48..a94ce73 100644 --- a/docs/reference/get_dc_flags.html +++ b/docs/reference/get_dc_flags.html @@ -43,10 +43,10 @@
    17. @@ -84,7 +84,7 @@

      Create Table of Data Quality Flags in Flagging Columns within individual
      - 
      get_dc_flags(directory = here::here())
      + 
      get_dc_flags(directory = here::here())
      diff --git a/docs/reference/get_df_flags.html b/docs/reference/get_df_flags.html index 2949a33..c1109ac 100644 --- a/docs/reference/get_df_flags.html +++ b/docs/reference/get_df_flags.html @@ -41,10 +41,10 @@

    18. @@ -81,7 +81,7 @@

      Create Table of Data Quality Flags Found in Data Files within a Data Package
      - 
      get_df_flags(directory = here::here())
      + 
      get_df_flags(directory = here::here())
      diff --git a/docs/reference/get_dp_flags.html b/docs/reference/get_dp_flags.html index f723d78..0076847 100644 --- a/docs/reference/get_dp_flags.html +++ b/docs/reference/get_dp_flags.html @@ -41,10 +41,10 @@

    19. @@ -81,7 +81,7 @@

      Create Table of Data Quality Flags Found in a Data Package

      - 
      get_dp_flags(directory = here::here())
      + 
      get_dp_flags(directory = here::here())
      diff --git a/docs/reference/get_elevation.html b/docs/reference/get_elevation.html index 71b92bb..9fd4e57 100644 --- a/docs/reference/get_elevation.html +++ b/docs/reference/get_elevation.html @@ -35,10 +35,10 @@
    20. diff --git a/docs/reference/get_park_polygon.html b/docs/reference/get_park_polygon.html index fca6997..973f0a9 100644 --- a/docs/reference/get_park_polygon.html +++ b/docs/reference/get_park_polygon.html @@ -37,10 +37,10 @@
    21. diff --git a/docs/reference/get_taxon_rank.html b/docs/reference/get_taxon_rank.html index f213880..98a9514 100644 --- a/docs/reference/get_taxon_rank.html +++ b/docs/reference/get_taxon_rank.html @@ -35,10 +35,10 @@
    22. diff --git a/docs/reference/get_utm_zone.html b/docs/reference/get_utm_zone.html index c601c3f..ac28d39 100644 --- a/docs/reference/get_utm_zone.html +++ b/docs/reference/get_utm_zone.html @@ -37,10 +37,10 @@
    23. diff --git a/docs/reference/index.html b/docs/reference/index.html index e15a572..870dc1c 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -35,10 +35,10 @@
    24. diff --git a/docs/reference/long2UTM.html b/docs/reference/long2UTM.html index 35cd714..b36e1df 100644 --- a/docs/reference/long2UTM.html +++ b/docs/reference/long2UTM.html @@ -40,10 +40,10 @@
    25. diff --git a/docs/reference/order_cols.html b/docs/reference/order_cols.html index 976a93c..1c07f64 100644 --- a/docs/reference/order_cols.html +++ b/docs/reference/order_cols.html @@ -35,10 +35,10 @@
    26. diff --git a/docs/reference/replace_blanks.html b/docs/reference/replace_blanks.html index ccf73fc..944a16a 100644 --- a/docs/reference/replace_blanks.html +++ b/docs/reference/replace_blanks.html @@ -35,10 +35,10 @@
    27. @@ -69,7 +69,7 @@

      Replaces all blank cells with NA

      - 
      replace_blanks(directory = here::here())
      + 
      replace_blanks(directory = here::here())
      diff --git a/docs/reference/te_check.html b/docs/reference/te_check.html index 2e6d938..1c0f1a3 100644 --- a/docs/reference/te_check.html +++ b/docs/reference/te_check.html @@ -37,10 +37,10 @@
    28. diff --git a/docs/reference/utm_to_ll.html b/docs/reference/utm_to_ll.html index 02300fb..c9bb9b6 100644 --- a/docs/reference/utm_to_ll.html +++ b/docs/reference/utm_to_ll.html @@ -37,10 +37,10 @@
    29. diff --git a/docs/reference/validate_coord.html b/docs/reference/validate_coord.html index 049f26a..b94cef5 100644 --- a/docs/reference/validate_coord.html +++ b/docs/reference/validate_coord.html @@ -37,10 +37,10 @@
    30. diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 932501a..f491445 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,16 +4,16 @@ /404.html - /articles/a01_DRR_Background.html + /articles/index.html - /articles/a02_Using_DRR_Template.html + /articles/QCkit.html - /articles/index.html + /articles/Starting-a-DRR.html - /articles/QCkit.html + /articles/Using-the-DRR-Template.html /authors.html From 6e874244f78e58a00819c6cb15cc9d4eb901946f Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:15:26 -0700 Subject: [PATCH 20/33] add vignettes/articles --- .Rbuildignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.Rbuildignore b/.Rbuildignore index 5f3d199..086ab97 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -3,3 +3,4 @@ ^LICENSE\.md$ ^README\.Rmd$ ^\.github$ +^vignettes/articles$ From 961aca1dea6cbad30faa2776e09b927a3a9ea64a Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:19:41 -0700 Subject: [PATCH 21/33] autoupdate via devtools::document and pkgdown --- docs/articles/Starting-a-DRR.html | 46 +++++++++++++------------------ docs/pkgdown.yml | 2 +- 2 files changed, 20 insertions(+), 28 deletions(-) diff --git a/docs/articles/Starting-a-DRR.html b/docs/articles/Starting-a-DRR.html index 8ee7799..b2b24a9 100644 --- a/docs/articles/Starting-a-DRR.html +++ b/docs/articles/Starting-a-DRR.html @@ -161,16 +161,21 @@

      How to Start a DRR

      +

      +
        +

      1. After selecting “OK” two things will happne: First, you the DRR +Template file will open up. It is called “Untitled.Rmd” by default. +Second, a new folder will be created called “Untitled” (Unless you opted +to change the default “Name:” in the “New R Markdown” pop up, then these +will have whatever name you gave them).

        2. +

      2. Edit the DRR Template according to your specifications and the +instructions in the “Using the DRR +Template” guide.

        3. +

      3. When you are done, “knit” the .Rmd file to Word and submit the +resulting .docx file for publication.

        4. +
      +

      extra text to be moved elsewhere?

        -
      1. -

      2. How to Use this Template -line-by-line instructions and descriptions for how to use the DRR -Template.

        3. -

      3. The -DRR_Template the file you make changes to to generate a DRR. Note: -this is not a stand-alone file. To create a DRR please download the zipped -template with all associated files and folders.

      4. Bibtex reference file is used if you want to automate your citations. Add each citation in bibtex format to this file and save it. Add in-text @@ -188,24 +193,11 @@

        How to Start a DRR

        Examples

        -

        More will be provided as they are published. The following examples -are post-formatting and should be used as examples for content -generation only.

        -
          -

        1. DRR for -tabular (csv) datasets of hydrologic data used for calculating -hydrologic metrics as a part of the national Environmental Settings -monitoring protocol.

          2. -

        2. DRR for geospatial (file -geodatabase) data continuing custom areas of analysis used for -Environmental Settings monitoring protocol. Report created in Microsoft -Word and ported to the template.

          3. -
        - -
        -

        Tips, FAQs, and Errata -

        -

        (coming soon)

        +

        Knit your own example DRR: Assuming you left the +“Name:” as the default “untitled”, you should be able to knit the DRR +template in to an example .docx that could be submitted for publication. +If you opted to change the Name, you will need to update the the file +paths before kniting.

        diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index aa98a89..bb19a5f 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,5 +5,5 @@ articles: Starting-a-DRR: Starting-a-DRR.html Using-the-DRR-Template: Using-the-DRR-Template.html QCkit: QCkit.html -last_built: 2024-02-09T15:07Z +last_built: 2024-02-09T16:15Z From 7432c4e1e6eb836bd97826d8a5b5bb16fba850b5 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:34:53 -0700 Subject: [PATCH 22/33] update directory names for portability --- .../BICY_Example/Example_BICY_Veg_metadata.xml | 0 .../BICY_Example/Mini_BICY_Veg_Geography.csv | 0 .../Mini_BICY_Veg_Intercept_Cleaned.csv | 0 .../BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv | 0 .../skeleton/BICY_Example/ProcessingWorkflow.png | Bin .../skeleton/national-park-service-DRR.csl | 0 .../{NPS DRR => NPS_DRR}/skeleton/references.bib | 0 .../{NPS DRR => NPS_DRR}/skeleton/skeleton.Rmd | 0 .../templates/{NPS DRR => NPS_DRR}/template.yaml | 2 +- 9 files changed, 1 insertion(+), 1 deletion(-) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/BICY_Example/ProcessingWorkflow.png (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/national-park-service-DRR.csl (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/references.bib (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/skeleton/skeleton.Rmd (100%) rename inst/rmarkdown/templates/{NPS DRR => NPS_DRR}/template.yaml (82%) diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml b/inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml rename to inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Example_BICY_Veg_metadata.xml diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv b/inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv rename to inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Geography.csv diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv b/inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv rename to inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Intercept_Cleaned.csv diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv b/inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv rename to inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/Mini_BICY_Veg_Transect_Cleaned.csv diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/ProcessingWorkflow.png b/inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/ProcessingWorkflow.png similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/BICY_Example/ProcessingWorkflow.png rename to inst/rmarkdown/templates/NPS_DRR/skeleton/BICY_Example/ProcessingWorkflow.png diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/national-park-service-DRR.csl b/inst/rmarkdown/templates/NPS_DRR/skeleton/national-park-service-DRR.csl similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/national-park-service-DRR.csl rename to inst/rmarkdown/templates/NPS_DRR/skeleton/national-park-service-DRR.csl diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/references.bib b/inst/rmarkdown/templates/NPS_DRR/skeleton/references.bib similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/references.bib rename to inst/rmarkdown/templates/NPS_DRR/skeleton/references.bib diff --git a/inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/NPS_DRR/skeleton/skeleton.Rmd similarity index 100% rename from inst/rmarkdown/templates/NPS DRR/skeleton/skeleton.Rmd rename to inst/rmarkdown/templates/NPS_DRR/skeleton/skeleton.Rmd diff --git a/inst/rmarkdown/templates/NPS DRR/template.yaml b/inst/rmarkdown/templates/NPS_DRR/template.yaml similarity index 82% rename from inst/rmarkdown/templates/NPS DRR/template.yaml rename to inst/rmarkdown/templates/NPS_DRR/template.yaml index 50db208..ee179c1 100644 --- a/inst/rmarkdown/templates/NPS DRR/template.yaml +++ b/inst/rmarkdown/templates/NPS_DRR/template.yaml @@ -1,4 +1,4 @@ -name: NPS DRR +name: NPS_DRR description: > A description of the template create_dir: FALSE From 8e3f856428f3d3327bb7ce7a5796ca901a04e927 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 09:36:15 -0700 Subject: [PATCH 23/33] autoupdate via pkgdown and devtools::document() --- docs/pkgdown.yml | 2 +- docs/reference/create_datastore_script.html | 4 ++-- docs/reference/get_custom_flags.html | 2 +- docs/reference/get_dc_flags.html | 2 +- docs/reference/get_df_flags.html | 2 +- docs/reference/get_dp_flags.html | 2 +- docs/reference/replace_blanks.html | 2 +- 7 files changed, 8 insertions(+), 8 deletions(-) diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index bb19a5f..478693e 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,5 +5,5 @@ articles: Starting-a-DRR: Starting-a-DRR.html Using-the-DRR-Template: Using-the-DRR-Template.html QCkit: QCkit.html -last_built: 2024-02-09T16:15Z +last_built: 2024-02-09T16:35Z diff --git a/docs/reference/create_datastore_script.html b/docs/reference/create_datastore_script.html index 1f1b46c..3d50ff7 100644 --- a/docs/reference/create_datastore_script.html +++ b/docs/reference/create_datastore_script.html @@ -82,7 +82,7 @@

        Turn a GitHub release into a DataStore Script Reference

        create_datastore_script(
   owner,
   repo,
-  path = here::here(),
+  path = here::here(),
   force = FALSE,
   dev = FALSE
 )
        @@ -99,7 +99,7 @@

        Arguments

        path
        -

        String. The location where the release .zip from GitHub should be downloaded to (and uploaded from). Defaults to the working directory of the R Project (i.e. here::here()).

        +

        String. The location where the release .zip from GitHub should be downloaded to (and uploaded from). Defaults to the working directory of the R Project (i.e. here::here()).

        force
        diff --git a/docs/reference/get_custom_flags.html b/docs/reference/get_custom_flags.html index f413d62..b688ee1 100644 --- a/docs/reference/get_custom_flags.html +++ b/docs/reference/get_custom_flags.html @@ -100,7 +100,7 @@

        Creates dataframe(s) summarizing data quality

        get_custom_flags(
-  directory = here::here(),
+  directory = here::here(),
   cols = (""),
   output = c("all", "files", "columns")
 )
        diff --git a/docs/reference/get_dc_flags.html b/docs/reference/get_dc_flags.html index a94ce73..3c3823e 100644 --- a/docs/reference/get_dc_flags.html +++ b/docs/reference/get_dc_flags.html @@ -84,7 +84,7 @@

        Create Table of Data Quality Flags in Flagging Columns within individual

        - 
        get_dc_flags(directory = here::here())
        + 
        get_dc_flags(directory = here::here())
        diff --git a/docs/reference/get_df_flags.html b/docs/reference/get_df_flags.html index c1109ac..8d64bae 100644 --- a/docs/reference/get_df_flags.html +++ b/docs/reference/get_df_flags.html @@ -81,7 +81,7 @@

        Create Table of Data Quality Flags Found in Data Files within a Data Package

        - 
        get_df_flags(directory = here::here())
        + 
        get_df_flags(directory = here::here())
        diff --git a/docs/reference/get_dp_flags.html b/docs/reference/get_dp_flags.html index 0076847..0a4c63a 100644 --- a/docs/reference/get_dp_flags.html +++ b/docs/reference/get_dp_flags.html @@ -81,7 +81,7 @@

        Create Table of Data Quality Flags Found in a Data Package

        - 
        get_dp_flags(directory = here::here())
        + 
        get_dp_flags(directory = here::here())
        diff --git a/docs/reference/replace_blanks.html b/docs/reference/replace_blanks.html index 944a16a..3977a12 100644 --- a/docs/reference/replace_blanks.html +++ b/docs/reference/replace_blanks.html @@ -69,7 +69,7 @@

        Replaces all blank cells with NA

        - 
        replace_blanks(directory = here::here())
        + 
        replace_blanks(directory = here::here())
        From 988a58e8a4f20f4465d603c0523e562de5cc5d8f Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 10:21:06 -0700 Subject: [PATCH 24/33] Increment version --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 53166c0..a6c8522 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: QCkit Type: Package Title: NPS Inventory and Monitoring Quality Control Toolkit -Version: 0.1.4 +Version: 0.1.5 Authors@R: c( person(given = "Robert", family = "Baker", From 4e94db7d2808b43fe7f82898bb454aac3e1fd8b8 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 10:21:19 -0700 Subject: [PATCH 25/33] increment version; add info about DRR template --- NEWS.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/NEWS.md b/NEWS.md index 43f027b..97d78ac 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# QCkit v0.1.5 +2024-02-09 +* This version adds the DRR template, example files, and associated documentation to the QCkit package. + # QCkit v0.1.4 2024-01-23 * Maintenance on `get_custom_flag()` to align with updated DRR requirements From 58fdfd6dc33dbd775fe39dc3e3fc4d1e93538454 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 10:21:32 -0700 Subject: [PATCH 26/33] add purpose and scope documentation --- docs/articles/DRR_Purpose_and_Scope.html | 446 +++++++++++++++++++++++ 1 file changed, 446 insertions(+) create mode 100644 docs/articles/DRR_Purpose_and_Scope.html diff --git a/docs/articles/DRR_Purpose_and_Scope.html b/docs/articles/DRR_Purpose_and_Scope.html new file mode 100644 index 0000000..fb3f354 --- /dev/null +++ b/docs/articles/DRR_Purpose_and_Scope.html @@ -0,0 +1,446 @@ + + + + + + + +DRR Purpose and Scope • QCkit + + + + + + + + + + + + +
        +
        + + + + +
        +
        +
        +

        DRR Purpose and Scope

        + + + Source: vignettes/articles/DRR_Purpose_and_Scope.Rmd + + +
        + + + + +

        Lifecycle: experimental

        + +
        +

        Background +

        +

        The Data Release Report (DRR) is aimed at fulfilling requirements and +expectations of Open Science at the National Park Service. This +includes:

        +
          +

        • Broad adoption of open-data and open-by-default +practices.

          • +

        • A move in the scientific disciplines toward considering and +publishing data sets as independently-citable scientific works.

          • +

        • Routine assignment of digital object identifiers (DOIs) to +datasets to facilitate location, reuse, and citation of specific +data

          • +

        • Increased transparency and reproducibility in the processing and +analysis of data.

          • +

        • Establishment of peer reviewed “data journals” dedicated to +publishing data sets and associated documentation designed to facilitate +their reuse.

          • +

        • Expectation that science-based decisions are based on +peer-reviewed, reproducible, and open science by default.

          • +
        +

        Data Release Reports are designed to parallel external peer-reviewed +scientific journals dedicated to facilitate reuse of reproducible +scientific data, in recognition that the primary reason IMD data are +collected is to support science-based decisions.

        +

        Note that publication in a Data Release Report Series (not mandated) +is distinct from requirements to document data collection, processing, +and quality evaluation (mandated; see below). The establishment of a +Data Release Report Series is intended to facilitate and encourage this +type of reporting in a standard format, and in a manner commensurate +with current scientific norms.

        +
        +
        +

        Definitions +

        +

        Reproducibility. The degree to which scientific +information, modeling, and methods of analysis could be evaluated by an +independent third party to arrive at the same, or substantially similar, +conclusion as the original study or information, and that the scientific +assessment can be repeated to obtain similar results (Plesser 2017). A +study is reproducible if you can take the original data and the computer +code used to analyze the data and reproduce all of the numerical +findings from the study. This may initially sound like a trivial task +but experience has shown that it’s not always easy to achieve this +seemingly minimal standard (ASA 2017, Plesser 2017).

        +

        Transparency. Full disclosure of the methods used to +obtain, process, analyze, and review scientific data and other +information products, the availability of the data that went into and +came out of the analysis, and the computer code used to conduct the +analysis. Documenting this information is crucial to ensure +reproducibility and requires, at minimum, the sharing of analytical data +sets, relevant metadata, analytical code, and related software.

        +

        Fitness for Use. The utility of scientific +information (in this case a dataset) for its intended users and its +intended purposes. Agencies must review and communicate the fitness of a +dataset for its intended purpose, and should provide the public +sufficient documentation about each dataset to allow data users to +determine the fitness of the data for the purpose for which third +parties may consider using it.

        +

        Decisions. The type of decisions that must be based +on publicly-available, reproducible, and peer-reviewed science has not +been defined. At a minimum it includes any influential decisions, but it +may also include any decisions subject to public review and comment.

        +

        Descriptive Reporting. The policies listed above are +consistent in the requirement to provide documentation that describes +the methods used to collect, process, and evaluate science products, +including data. Note that this is distinct from (and in practice may +significantly differ from) prescriptive documents such as protocols, +procedures, and study plans. Descriptive reporting should cite or +describe relevant science planning documents, methods used, deviations, +and mitigations. In total, descriptive reporting provides a clear “line +of sight” on precisely how data were collected, processed, and +evaluated. Although deviations may warrant revisions to prescriptive +documents, changes in prescriptive documents after the fact do not meet +reproducibility and transparency requirements.

        +
        +
        +

        Policy Requirements +

        +
        +

        NPS Requirements +

        +

        DO11B-a, +DO +11B-b, OMB +M-05-03 (Peer review and information quality):

        +
          +

        • Scientific information must be appropriately reviewed prior to +use in decision-making, regulatory processes, or dissemination to the +public, regardless of media.

          • +

        • As per OMB M-05-03 “scientific information” includes factual +inputs, data, models, analyses, technical information, or scientific +assessments related to such disciplines as the behavioral and social +sciences, public health and medical sciences, life and earth sciences, +engineering, or physical sciences.

          • +

        • Methods for producing information will be made transparent, to +the maximum extent practicable, through accurate documentation, use of +appropriate review, and verification of information quality.

          • +
        +

        OMB +M-19-15 (Updates to Implementing the Information +Quality Act):

        +
          +

        • Federal agencies must collect, use, and disseminate information +that is fit for its intended purpose.

          • +

        • Agencies must conduct pre-dissemination review of quality [of +scientific information] based on the likely use of that information. +Quality encompasses utility, integrity, and objectivity, defined as +follows: a) Utility – utility for its intended users and its intended +purposes, b) Integrity – refers to security, and c) Objectivity – +accurate, reliable, and unbiased as a matter of presentation and +substance.

          • +

        • Agencies should provide the public with sufficient documentation +about each dataset released to allow data users to determine the fitness +of the data for the purpose for which third parties may consider using +it. Potential users must be provided with sufficient +information to understand… the data’s strengths, weaknesses, analytical +limitations, security requirements, and processing options.

          • +
        • +

          Reproducibility requirements for Influential Information. Note +that because this may not be determined at the time of collection, +processing, or dissemination this should be the default for NPS +scientific activities:

          +
            +

          • Analyses must be disseminated with sufficient descriptions of +data and methods to allow them to be reproduced by qualified third +parties who may want to test the sensitivity of agency analyses. This is +a higher standard than simply documenting the characteristics of the +underlying data, which is required for all information.

            • +

          • Computer code used to process data should be made available to +the public for further analysis. In the context of results generated, +for example, a statistical model or machine augmented learning and +decision support, reproducibility requires, at a minimum transparency +about the specific methods, design parameters, equations or algorithms, +parameters, and assumptions used.

            • +
          +
          • +

        • Reports, data, and computer code used, developed, or cited in the +analysis and reporting of findings must be made publicly available +except where prohibited by law.

          • +
        +
        +
        +

        National Park Service Guidelines +

        +

        Multiple policy and guidance documents require the use of best +available science in decision-making at the Natonal Park Service (NPS). +Additional requirements include:

        +

        SO +3369 (Promoting Open Science):

        +
          +
        • Defines “best available science” as publicly-available, +reproducible, and peer reviewed. Requires that any decisions or +scientific conclusions must prioritize the use of publicly-available, +reproducible, and peer-reviewed science. Decisions or conclusions not +based on such must include an explanation of why the alternative is the +best available information. Effective as of 28 September 2018 with no +transition period.
          • +
        +

        DO +11B (Ensuring Objectivity, Utility, and Integrity +of Information Used and Disseminated by the National Park +Service):

        +
          +
        • The NPS will ensure that information it releases to the public or +utilizes in management decisions will be developed from reliable data +sources that provide the highest quality of information at each stage of +information development.
          • +
        +
        +
        +

        NPS Inventory and Monitoring Requirements +

        +

        NPS-75 +(Inventory and Monitoring Guidelines):

        +
          +

        • An annual summary report documenting the condition of park +resources should be developed as part of the annual revision of the +parks Resource Management Plan.

          • +

        • An annual report provides a mechanism for reviewing and making +recommendations for revisions in the [Protocol/SOPs].

          • +

        • [Inventory] data obtained should be archived in park records and, +when appropriate, a report should be written summarizing +findings.

          • +

        • Reporting requirements as per IMD directive

          • +
        +

        IMD +Reporting and Analysis Guidance

        +
          +
        • Annual Analyses Required of all Monitoring Protocols: Conduct an +annual data review to address whether there is any unexpected +variability or outliers, and whether any protocol changes or additional +studies may be needed. Part of the review must assess the data against +standards defined in the protocol narrative, data quality standards +document or quality assurance plan, and document whether those standards +were met. When data are not available for review during the year they +are collected (for example, when data have been submitted to a lab for +analysis), review must be conducted the year the data are available. For +example, if water quality and quantity data are typically reviewed in +October and lab results for water quality are not available until the +following March, these data must be reviewed during the following +October review period, if not before.
          • +
        +
        +
        +
        +

        Implications +

        +

        Because all of the data the NPS IMD collects is intended for use in +supporting science-based decisions as per our program’s five goals, and +is intended for use in planning (the decisions of which are subject to +public comment as per NEPA requirements), this means that by +default:

        +
          +

        • All analytical work we do should be reproducible to the extent +possible. Analytical work includes both statistical analysis and +reporting of data as well as quality control procedures where data are +tested against quality standards and qualified or corrected as +appropriate.

          • +

        • Full reproducibility may not be possible in all cases, +particularly where analytical methods involve subject matter expertise +to make informed judgments on how to proceed with analyses. In such +cases, decisions should be documented to ensure transparency.

          • +

        • All IMD data should be published with supporting documentation to +allow for reproduction of results.

          • +

        • All IMD data should be evaluated to determine whether they are +suitable for their intended use.

          • +

        • All IMD data should be published with information fully +describing how data were collected, processed, and evaluated.

          • +

        • All data should be published in open formats that support the FAIR principles +(Findable, Accessible, Interoperable, and Resuable).

          • +
        +
        +
        +

        Scope +

        +

        (for the NPS Inventory & Monitoring Program)

        +
        +

        General Studies +

        +

        Any project that involves the collection of scientific data for use +in supporting decisions to be made by NPS personnel. General study data +may or may not be collected based on documented or peer-reviewed study +plans or defined quality standards, but are in most cases purpose-driven +and resultant information should be evaluated for the suitability +for—and prior to—their use in decision support. These data may be reused +for secondary purposes including similar decisions at other locations or +times and/or portions of general study data may be reused or contribute +to other scientific work (observations from a deer browsing study may be +contribute to an inventory or may be used as ancillary data to explain +monitoring observations).

        +
        +Workflow for data collection, processing, dissemination, and use for general studies. Teal-colored boxes are subject to reproducibility requirements.

        +Workflow for data collection, processing, dissemination, and use for +general studies. Teal-colored boxes are subject to reproducibility +requirements. +

        +
        +
        +
        +

        Vital Signs Monitoring +

        +

        Vital signs monitoring data are collected by IMD and park staff to +address specific monitoring objectives following methods designed to +ensure long-term comparability of data. Procedures are established to +ensure that data quality standards are maintained in perpetuity. +However, because monitoring data are collected over long periods of time +in dynamic systems, the methods employed may differ from those +prescribed in monitoring protocols, procedures, or sampling plans, and +any deviations (and resultant mitigations to the data) must be +documented. Data should be evaluated to ensure that they meet prescribed +standards and are suitable for analyses designed to test whether +monitoring objectives have been met. Monitoring data may be reused for +secondary purposes including synthesis reports and condition +assessments, and portions of monitoring data may contribute to +inventories.

        +
        +Workflow for data collection, processing, dissemination, and use for vital sign monitoring efforts. Teal-colored boxes are subject to reproducibility requirements.

        +Workflow for data collection, processing, dissemination, and use for +vital sign monitoring efforts. Teal-colored boxes are subject to +reproducibility requirements. +

        +
        +
        +
        +

        Inventory Studies +

        +

        Inventory study data are similar to general study data in that they +are time- and area-specific efforts designed to answer specific +management needs as well as broader inventory objectives outlined in +project-specific study plans and inventory science plans. Inventory +studies typically follow well-documented data collection methods or +procedures, and resultant data should be evaluated for whether they are +suitable for use in supporting study-specific and broader +inventory-level objectives. Inventory study data are expected to be +reused to meet broader inventory level goals, but may also support other +scientific work and decision support.

        +
        +Workflow for data collection, processing, dissemination, and use for inventory studies. Teal-colored boxes are subject to reproducibility requirements.

        +Workflow for data collection, processing, dissemination, and use for +inventory studies. Teal-colored boxes are subject to reproducibility +requirements. +

        +
        +
        +
        +
        +

        References +

        +

        American Statistical Association (ASA). 2017. Recommendations to +funding agencies for supporting reproducible research. https://www.amstat.org/asa/files/pdfs/POL-ReproducibleResearchRecommendations.pdf.

        +

        Plesser, H. E. 2017. Reproducibility vs. Replicability: A brief +history of a confused terminology. Front. Neuroinform. 11:76. https://doi.org/10.3389/fninf.2017.00076.

        +
        +
        + + + +
        + + + +
        +

        +

        Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

        +
        + +
        +

        +

        Site built with pkgdown 2.0.7.

        +
        + +
        +
        + + + + + + + + From fe099c3c94c5cf5a9b4a5b253f2b60caf80f90a8 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 10:21:57 -0700 Subject: [PATCH 27/33] add image files supporting purpose and scope documentation --- docs/articles/QCkit.html | 128 --------------------- docs/articles/WorkflowModelGeneral.png | Bin 0 -> 15023 bytes docs/articles/WorkflowModelInventories.png | Bin 0 -> 26785 bytes docs/articles/WorkflowModelMonitoring.png | Bin 0 -> 31752 bytes 4 files changed, 128 deletions(-) delete mode 100644 docs/articles/QCkit.html create mode 100644 docs/articles/WorkflowModelGeneral.png create mode 100644 docs/articles/WorkflowModelInventories.png create mode 100644 docs/articles/WorkflowModelMonitoring.png diff --git a/docs/articles/QCkit.html b/docs/articles/QCkit.html deleted file mode 100644 index dd7b701..0000000 --- a/docs/articles/QCkit.html +++ /dev/null @@ -1,128 +0,0 @@ - - - - - - - -QCkit • QCkit - - - - - - - - - - - - -
        -
        - - - - -
        -
        -
        -

        QCkit

        - - - Source: vignettes/QCkit.Rmd - - -
        - - - - -
        - - - -
        - - - -
        -

        -

        Developed by Robert Baker, Judd Patterson, Joe DeVivo, Issac Quevedo.

        -
        - -
        -

        -

        Site built with pkgdown 2.0.7.

        -
        - -
        -
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vignette --- vignettes/QCkit.Rmd | 19 ------------------- 1 file changed, 19 deletions(-) delete mode 100644 vignettes/QCkit.Rmd diff --git a/vignettes/QCkit.Rmd b/vignettes/QCkit.Rmd deleted file mode 100644 index 37c13e2..0000000 --- a/vignettes/QCkit.Rmd +++ /dev/null @@ -1,19 +0,0 @@ ---- -title: "QCkit" -output: rmarkdown::html_vignette -vignette: > - %\VignetteIndexEntry{QCkit} - %\VignetteEngine{knitr::rmarkdown} - %\VignetteEncoding{UTF-8} ---- - -```{r, include = FALSE} -knitr::opts_chunk$set( - collapse = TRUE, - comment = "#>" -) -``` - -```{r setup} -library(QCkit) -``` From 7e489a56f43b7e86bef6396813e5445f4c286f5b Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Fri, 9 Feb 2024 10:22:26 -0700 Subject: [PATCH 29/33] add purpose and scope article --- vignettes/articles/DRR_Purpose_and_Scope.Rmd | 368 +++++++++++++++++++ 1 file changed, 368 insertions(+) create mode 100644 vignettes/articles/DRR_Purpose_and_Scope.Rmd diff --git a/vignettes/articles/DRR_Purpose_and_Scope.Rmd b/vignettes/articles/DRR_Purpose_and_Scope.Rmd new file mode 100644 index 0000000..3a590fc --- /dev/null +++ b/vignettes/articles/DRR_Purpose_and_Scope.Rmd @@ -0,0 +1,368 @@ +--- +title: "DRR Purpose and Scope" +--- + +```{r setup1, include=FALSE} +knitr::opts_chunk$set(echo = FALSE) + +# Learn more about creating websites with Distill at: +# https://rstudio.github.io/distill/website.html + +``` + + + +[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) + + + +```{r setup2, include=FALSE} +RRpackages <- c('markdown', # links to Sundown rendering library + 'rmarkdown', # newer rendering via pandoc + 'pander', # alternative renderer for markdown, + # plus better tables than just knitr + 'knitr', + "devtools", + "R.rsp", # dynamic generation of scientific reports + "rmdHelpers", # misc from Mark Peterson + # thisFileName() thisFile_knit() + 'yaml', # format data into markdown + 'kableExtra', + 'rmdformats', # templates including automatic ToC, + # also use_bookdown() + 'htmltools' # + ) + +inst <- RRpackages %in% installed.packages() +if (length(RRpackages[!inst]) > 0) { + install.packages(RRpackages[!inst], dep = TRUE) +} +lapply(RRpackages, library, character.only = TRUE) + +knitr::opts_chunk$set( + echo = TRUE, + comment = " ", + dev = "svg", + tidy.opts = list(width.cutoff = 60), + tidy = TRUE + ) + +``` + +# Background + +The Data Release Report (DRR) is aimed at fulfilling requirements and expectations of Open Science at the National Park Service. This includes: + +- Broad adoption of open-data and open-by-default practices. + +- A move in the scientific disciplines toward considering and + publishing data sets as independently-citable scientific works. + +- Routine assignment of digital object identifiers (DOIs) to datasets + to facilitate location, reuse, and citation of specific data + +- Increased transparency and reproducibility in the processing and + analysis of data. + +- Establishment of peer reviewed "data journals" dedicated to + publishing data sets and associated documentation designed to + facilitate their reuse. + +- Expectation that science-based decisions are based on peer-reviewed, + reproducible, and open science by default. + +Data Release Reports are designed to parallel external peer-reviewed +scientific journals dedicated to facilitate reuse of reproducible +scientific data, in recognition that the primary reason IMD data are +collected is to support science-based decisions. + +Note that publication in a Data Release Report Series (not mandated) is +distinct from requirements to document data collection, processing, and +quality evaluation (mandated; see below). The establishment of a Data +Release Report Series is intended to facilitate and encourage this type +of reporting in a standard format, and in a manner commensurate with +current scientific norms. + + +# Definitions + +**Reproducibility.** The degree to which scientific information, +modeling, and methods of analysis could be evaluated by an independent +third party to arrive at the same, or substantially similar, conclusion +as the original study or information, and that the scientific assessment +can be repeated to obtain similar results (Plesser 2017). A study is +reproducible if you can take the original data and the computer code +used to analyze the data and reproduce all of the numerical findings +from the study. This may initially sound like a trivial task but +experience has shown that it’s not always easy to achieve this seemingly +minimal standard (ASA 2017, Plesser 2017). + +**Transparency.** Full disclosure of the methods used to obtain, +process, analyze, and review scientific data and other information +products, the availability of the data that went into and came out of +the analysis, and the computer code used to conduct the analysis. +Documenting this information is crucial to ensure reproducibility and +requires, at minimum, the sharing of analytical data sets, relevant +metadata, analytical code, and related software. + +**Fitness for Use.** The utility of scientific information (in this case +a dataset) for its intended users and its intended purposes. Agencies +must review and communicate the fitness of a dataset for its intended +purpose, and should provide the public sufficient documentation about +each dataset to allow data users to determine the fitness of the data +for the purpose for which third parties may consider using it. + +**Decisions.** The type of decisions that must be based on +publicly-available, reproducible, and peer-reviewed science has not been +defined. At a minimum it includes any influential decisions, but it may +also include any decisions subject to public review and comment. + +**Descriptive Reporting.** The policies listed above are consistent in +the requirement to provide documentation that describes the methods used +to collect, process, and evaluate science products, including data. Note +that this is distinct from (and in practice may significantly differ +from) prescriptive documents such as protocols, procedures, and study +plans. Descriptive reporting should cite or describe relevant science +planning documents, methods used, deviations, and mitigations. In total, +descriptive reporting provides a clear “line of sight” on precisely how +data were collected, processed, and evaluated. Although deviations may +warrant revisions to prescriptive documents, changes in prescriptive +documents after the fact do not meet reproducibility and transparency +requirements. + +# Policy Requirements + +## NPS Requirements + +[**DO11B-a**](https://www.nps.gov/subjects/policy/upload/DO_11B_10-16-2002.pdf)**, +[DO 11B-b](https://irma.nps.gov/DataStore/DownloadFile/474958), [OMB +M-05-03](https://www.whitehouse.gov/wp-content/uploads/2017/11/2005-M-05-03-Issuance-of-OMBs-Final-Information-Quality-Bulletin-for-Peer-Review-December-16-2004.pdf) +(Peer review and information quality):** + +- Scientific information must be appropriately reviewed prior to use + in decision-making, regulatory processes, or dissemination to the + public, regardless of media. + +- As per OMB M-05-03 “scientific information” includes factual inputs, + data, models, analyses, technical information, or scientific + assessments related to such disciplines as the behavioral and social + sciences, public health and medical sciences, life and earth + sciences, engineering, or physical sciences. + +- Methods for producing information will be made transparent, to the + maximum extent practicable, through accurate documentation, use of + appropriate review, and verification of information quality. + +[**OMB +M-19-15**](https://www.whitehouse.gov/wp-content/uploads/2019/04/M-19-15.pdf) +**(Updates to Implementing the Information Quality Act):** + +- Federal agencies must collect, use, and disseminate information that + is fit for its intended purpose. + +- Agencies must conduct pre-dissemination review of quality [of + scientific information] based on the likely use of that information. + Quality encompasses utility, integrity, and objectivity, defined as + follows: a) Utility – utility for its intended users and its + intended purposes, b) Integrity – refers to security, and c) + Objectivity – accurate, reliable, and unbiased as a matter of + presentation and substance. + +- Agencies should provide the public with sufficient documentation + about each dataset released to allow data users to determine the + fitness of the data for the purpose for which third parties may + consider using it. Potential users *must* be provided with + sufficient information to understand… the data’s strengths, + weaknesses, analytical limitations, security requirements, and + processing options. + +- Reproducibility requirements for Influential Information. Note that + because this may not be determined at the time of collection, + processing, or dissemination this should be the default for NPS + scientific activities: + + - Analyses must be disseminated with sufficient descriptions of + data and methods to allow them to be reproduced by qualified + third parties who may want to test the sensitivity of agency + analyses. This is a higher standard than simply documenting the + characteristics of the underlying data, which is required for + all information. + + - Computer code used to process data should be made available to + the public for further analysis. In the context of results + generated, for example, a statistical model or machine augmented + learning and decision support, reproducibility requires, at a + minimum transparency about the specific methods, design + parameters, equations or algorithms, parameters, and assumptions + used. + +- Reports, data, and computer code used, developed, or cited in the + analysis and reporting of findings must be made publicly available + except where prohibited by law. + +## National Park Service Guidelines + +Multiple policy and guidance documents require the use of best available science in +decision-making at the Natonal Park Service (NPS). Additional requirements include: + +[**SO +3369**](https://www.doi.gov/sites/doi.gov/files/elips/documents/so_3369_promoting_open_science.pdf) +**(Promoting Open Science):** + +- Defines “best available science” as publicly-available, + reproducible, and peer reviewed. Requires that any decisions or + scientific conclusions must prioritize the use of + publicly-available, reproducible, and peer-reviewed science. + Decisions or conclusions not based on such must include an + explanation of why the alternative is the best available + information. Effective as of 28 September 2018 with no transition + period. + +[**DO +11B**](https://www.nps.gov/subjects/policy/upload/DO_11B_10-16-2002.pdf) +**(Ensuring Objectivity, Utility, and Integrity of Information Used and +Disseminated by the National Park Service):** + +- The NPS will ensure that information it releases to the public or + utilizes in management decisions will be developed from reliable + data sources that provide the highest quality of information at each + stage of information development. + +## NPS Inventory and Monitoring Requirements + +[**NPS-75**](https://irma.nps.gov/DataStore/Reference/Profile/622933) +**(Inventory and Monitoring Guidelines):** + +- An annual summary report documenting the condition of park resources + should be developed as part of the annual revision of the parks + Resource Management Plan. + +- An annual report provides a mechanism for reviewing and making + recommendations for revisions in the [Protocol/SOPs]. + +- [Inventory] data obtained should be archived in park records and, + when appropriate, a report should be written summarizing findings. + +- Reporting requirements as per IMD directive + +[**IMD Reporting and Analysis +Guidance**](https://irma.nps.gov/DataStore/Reference/Profile/2252934) + +- Annual Analyses Required of all Monitoring Protocols: Conduct an + annual data review to address whether there is any unexpected + variability or outliers, and whether any protocol changes or + additional studies may be needed. Part of the review must assess the + data against standards defined in the protocol narrative, data + quality standards document or quality assurance plan, and document + whether those standards were met. When data are not available for + review during the year they are collected (for example, when data + have been submitted to a lab for analysis), review must be conducted + the year the data are available. For example, if water quality and + quantity data are typically reviewed in October and lab results for + water quality are not available until the following March, these + data must be reviewed during the following October review period, if + not before. + +# Implications + +Because all of the data the NPS IMD collects is intended for use in supporting +science-based decisions as per our program’s five goals, and is intended +for use in planning (the decisions of which are subject to public +comment as per NEPA requirements), this means that by default: + +- All analytical work we do should be reproducible to the extent + possible. Analytical work includes both statistical analysis and + reporting of data as well as quality control procedures where data + are tested against quality standards and qualified or corrected as + appropriate. + +- Full reproducibility may not be possible in all cases, particularly + where analytical methods involve subject matter expertise to make + informed judgments on how to proceed with analyses. In such cases, + decisions should be documented to ensure transparency. + +- All IMD data should be published with supporting documentation to + allow for reproduction of results. + +- All IMD data should be evaluated to determine whether they are + suitable for their intended use. + +- All IMD data should be published with information fully describing + how data were collected, processed, and evaluated. + +- All data should be published in open formats that support the [FAIR + principles](https://www.go-fair.org/fair-principles/) (Findable, + Accessible, Interoperable, and Resuable). + +# Scope + +(for the NPS Inventory & Monitoring Program) + +## General Studies + +Any project that involves the collection of scientific data for use in +supporting decisions to be made by NPS personnel. General study data may +or may not be collected based on documented or peer-reviewed study plans +or defined quality standards, but are in most cases purpose-driven and +resultant information should be evaluated for the suitability for—and +prior to—their use in decision support. These data may be reused for +secondary purposes including similar decisions at other locations or +times and/or portions of general study data may be reused or contribute +to other scientific work (observations from a deer browsing study may be +contribute to an inventory or may be used as ancillary data to explain +monitoring observations). + +```{r figure1, echo=FALSE, fig.align="center", out.width="70%", fig.cap="Workflow for data collection, processing, dissemination, and use for general studies. Teal-colored boxes are subject to reproducibility requirements."} +include_graphics("WorkflowModelGeneral.png") + +``` + +## Vital Signs Monitoring + +Vital signs monitoring data are collected by IMD and park staff to +address specific monitoring objectives following methods designed to +ensure long-term comparability of data. Procedures are established to +ensure that data quality standards are maintained in perpetuity. +However, because monitoring data are collected over long periods of time +in dynamic systems, the methods employed may differ from those +prescribed in monitoring protocols, procedures, or sampling plans, and +any deviations (and resultant mitigations to the data) must be +documented. Data should be evaluated to ensure that they meet prescribed +standards and are suitable for analyses designed to test whether +monitoring objectives have been met. Monitoring data may be reused for +secondary purposes including synthesis reports and condition +assessments, and portions of monitoring data may contribute to +inventories. + +```{r figure2, echo=FALSE, fig.align="center", out.width="70%", fig.cap="Workflow for data collection, processing, dissemination, and use for vital sign monitoring efforts. Teal-colored boxes are subject to reproducibility requirements."} +include_graphics("WorkflowModelMonitoring.png") + +``` + +## Inventory Studies + +Inventory study data are similar to general study data in that they are +time- and area-specific efforts designed to answer specific management +needs as well as broader inventory objectives outlined in +project-specific study plans and inventory science plans. Inventory +studies typically follow well-documented data collection methods or +procedures, and resultant data should be evaluated for whether they are +suitable for use in supporting study-specific and broader +inventory-level objectives. Inventory study data are expected to be +reused to meet broader inventory level goals, but may also support other +scientific work and decision support. + +```{r figure3, echo=FALSE, fig.align="center", out.width="70%", fig.cap="Workflow for data collection, processing, dissemination, and use for inventory studies. Teal-colored boxes are subject to reproducibility requirements."} +include_graphics("WorkflowModelInventories.png") + +``` + +# References + +American Statistical Association (ASA). 2017. Recommendations to funding +agencies for supporting reproducible research. +. + +Plesser, H. E. 2017. Reproducibility vs. Replicability: A brief history +of a confused terminology. Front. Neuroinform. 11:76. +. 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docs/news/index.html | 12 ++-- docs/pkgdown.yml | 4 +- docs/reference/DC_col_check.html | 8 +-- docs/reference/QCkit-package.html | 8 +-- docs/reference/check_dc_cols.html | 8 +-- docs/reference/check_te.html | 8 +-- docs/reference/convert_datetime_format.html | 8 +-- docs/reference/convert_long_to_utm.html | 8 +-- docs/reference/convert_utm_to_ll.html | 8 +-- docs/reference/create_datastore_script.html | 8 +-- docs/reference/fix_utc_offset.html | 8 +-- docs/reference/fuzz_location.html | 8 +-- docs/reference/get_custom_flags.html | 8 +-- docs/reference/get_dc_flags.html | 8 +-- docs/reference/get_df_flags.html | 8 +-- docs/reference/get_dp_flags.html | 8 +-- docs/reference/get_elevation.html | 8 +-- docs/reference/get_park_polygon.html | 8 +-- docs/reference/get_taxon_rank.html | 8 +-- docs/reference/get_utm_zone.html | 8 +-- docs/reference/index.html | 8 +-- docs/reference/long2UTM.html | 8 +-- docs/reference/order_cols.html | 8 +-- docs/reference/replace_blanks.html | 8 +-- docs/reference/te_check.html | 8 +-- docs/reference/utm_to_ll.html | 8 +-- docs/reference/validate_coord.html | 8 +-- docs/sitemap.xml | 4 +- 36 files changed, 192 insertions(+), 208 deletions(-) diff --git a/docs/404.html b/docs/404.html index 4de547b..e96494a 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,15 +32,12 @@ QCkit - 0.1.4 + 0.1.5

        Reproducible Reports

        -

        The following is for users who are using the -DRR_to_docx.rmd template file to generate a data release -report using RMarkdown.

        +

        The following is for users who are using the DRR template file to +generate a data release report using RMarkdown.

        Standard Code Chunks

        @@ -307,12 +273,12 @@

        Automating Citations QCkit - 0.1.4 + 0.1.5

        diff --git a/docs/authors.html b/docs/authors.html index 0b082d9..40eb1bd 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,15 +17,12 @@ QCkit - 0.1.4 + 0.1.5 +
        +

        QCkit v0.1.5

        +

        2024-02-09 * This version adds the DRR template, example files, and associated documentation to the QCkit package.

        +

        QCkit v0.1.4

        2024-01-23 * Maintenance on get_custom_flag() to align with updated DRR requirements * Added function replace_blanks() to ingest a directory of .csvs and write them back out to .csv (overwriting the original files) with blanks converted to NA (except if a file has NO data - then it remains blank and needs to be dealt with manually)

        diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 478693e..2ae4a4c 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,8 +2,8 @@ pandoc: 3.1.1 pkgdown: 2.0.7 pkgdown_sha: ~ articles: + DRR_Purpose_and_Scope: DRR_Purpose_and_Scope.html Starting-a-DRR: Starting-a-DRR.html Using-the-DRR-Template: Using-the-DRR-Template.html - QCkit: QCkit.html -last_built: 2024-02-09T16:35Z +last_built: 2024-02-09T17:19Z diff --git a/docs/reference/DC_col_check.html b/docs/reference/DC_col_check.html index 7b50d51..b79483f 100644 --- a/docs/reference/DC_col_check.html +++ b/docs/reference/DC_col_check.html @@ -19,15 +19,12 @@ QCkit - 0.1.4 + 0.1.5

      31. +
      + + + + +
      +
      +
      +

      Starting a DRR

      + + + Source: vignettes/articles/Starting-a-DRR.Rmd + + +
      + + + + +

      Lifecycle: experimental

      + +
      +

      DRRs: Background +

      +

      Purpose and Scope of Data Release +Reports

      +

      This is a template is for use when drafting Data Release Reports. +DRRs are created by the National Park Service and provide detailed +descriptions of valuable research datasets, including the methods used +to collect the data and technical analyses supporting the quality of the +measurements. Data Release Reports focus on helping others reuse data +rather than presenting results, testing hypotheses, or presenting new +interpretations and in-depth analyses.

      +
      +
      +

      About this Template +

      +

      This template contains an rmarkdown template file, default folder +structure for project files, and all the necessary template files to +generate an unformatted .docx file. Upon submission for publication, the +.docx file will be ingested by EXstyles, converted to an .xml file and +fully formatted according to NPS branding upon final publication. The +goal of this process is to relieve data producers, managers, and +scientists from the burden of formatting and allow them to focus +primarily on content. Consequently, the .docx generated for the +publication process may not be visually appealing. The content, however, +should focus on quality control, of NPS data packages and evaluate their +of utility.

      +
      +
      +

      How to Start a DRR +

      +
        +

      1. To start your DRR you will need all of your data in flat +.csv files. All quality assurance, quality control, and quality +flagging should be completed. Ideally you have already created or are in +the process of creating a data package. All of the .csv files you want +to describe in the DRR should be in a single folder with no +additional .csv files (other files such as .txt and .xml will +be ignored). This folder can be the same folder you used/are using to +create a data package.

        2. +

      2. Using Rstudio, open an R project (Select File +> New Project…) in the same folder as your .csv files. If you already +have an R project (.Rproj) initiated from creating a data package, you +can use that same R project.

        3. +

      3. Install, update (if necessary), and load the QCkit R +package. QCkit can be installed either as a component of the NPSdataverse +or on its own. The benefits of installing the entire NPSdataverse is +that upon loading the NPSdataverse, you will automatically be informed +if there are any updates to QCkit (or any of the constituent packages). +The downside to installing and loading the NPSdataverse is that the +first time you install it the process can be lengthy (there are many +dependencies) and you may hit the GitHub.com API rate limit. Either +installation is from GitHub.com and requires the devtools package to +install.

        4. +

      4. Open a new DRR Template. From within Rstudio, +select the “File” drop down menu. Choose “New File” and then “R +markdown…”. This will open up a pop-up dialog box. Select “From +Template” on in the right-hand list and choose the template labelled +“NPS DRR {QCkit}”. You can change the file and folder name to something +other than “Untitled”, but if you do so the example DRR will not render +properly. Click OK. A new folder will be generated in your current +working directory titled, “Untitled” (or whatever name you have opted to +call it).

        5. +
      +

      +
        +
      1. +

      2. How to Use this Template +line-by-line instructions and descriptions for how to use the DRR +Template.

        3. +

      3. The +DRR_Template the file you make changes to to generate a DRR. Note: +this is not a stand-alone file. To create a DRR please download the zipped +template with all associated files and folders.

        4. +

      4. Bibtex +reference file is used if you want to automate your citations. Add +each citation in bibtex format to this file and save it. Add in-text +citations to the DRR Template and your References section will +automatically be generated for you when you knit the .Rmd to .docx. You +should still visually check the final format in the .docx file for +accuracy, completion, and formatting. If you would prefer to manually +format your citations, feel free to continue doing so.

        5. +

      5. DRR_Report +an example of the .docx output file that takes into account your edits +and changes to DRR_to_docx.Rmd (assuming you have saved and/or knit the +.Rmd to .docx format in Rstudio).

        6. +
      +
      +
      +

      Examples +

      +

      More will be provided as they are published. The following examples +are post-formatting and should be used as examples for content +generation only.

      +
        +

      1. DRR for +tabular (csv) datasets of hydrologic data used for calculating +hydrologic metrics as a part of the national Environmental Settings +monitoring protocol.

        2. +

      2. DRR for geospatial (file +geodatabase) data continuing custom areas of analysis used for +Environmental Settings monitoring protocol. Report created in Microsoft +Word and ported to the template.

        3. +
      +
      +
      +

      Tips, FAQs, and Errata +

      +

      (coming soon)

      +
      +
      + + + +
      + + + + +