From 257396054872dffac836fdf84081a29eca99f4ab Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Semid=C3=A1n=20Robaina=20Est=C3=A9vez?= Date: Fri, 3 Nov 2023 09:23:34 +0000 Subject: [PATCH] fix error --- src/pynteny/hmm.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/pynteny/hmm.py b/src/pynteny/hmm.py index 6519e50..00cefe5 100644 --- a/src/pynteny/hmm.py +++ b/src/pynteny/hmm.py @@ -146,6 +146,8 @@ def __init__( self._meta = pd.read_csv( self._metadata_file, sep="\t", usecols=metadata_columns ) + if "#ncbi_accession" in self._meta.columns: + self._meta = self._meta.rename(columns={"#ncbi_accession": "accession"}) @property def meta(self) -> pd.DataFrame: @@ -238,8 +240,6 @@ class PGAP(HMMDatabase): def __init__(self, *args, **kwargs): """Initialize class PGAP""" super().__init__(*args, **kwargs) - self._meta = self._meta.rename(columns={"#ncbi_accession": "accession"}) - # self._meta = self.remove_missing_HMMs_from_metadata(meta_outfile=None) def remove_missing_HMMs_from_metadata( self, hmm_database: Path, meta_outfile: Path = None