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Is your feature request related to a problem? Please describe.
Add support to download the PFAM-A database, besides the PGAP database, to be able to use PFAM models alongside TIGRFAM.
Describe the solution you'd like
Add support to download PFAM database, also automatically split original multi-HMM file into separate files (as required by pynteny search). This can be achieved in bash like this:
#!/bin/bash# Input hmm file path as a param to this script
csplit --digits=2 --quiet --prefix=hmm $1"////+1""{*}"whileread -r id filename
do
mv "$filename""$id".hmm
done<<(awk '$1 == "ACC" {print $2,FILENAME; nextfile}' hmm*)
But ideally would be integrated in a dedicated python function.
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Add support to download the PFAM-A database, besides the PGAP database, to be able to use PFAM models alongside TIGRFAM.
Describe the solution you'd like
Add support to download PFAM database, also automatically split original multi-HMM file into separate files (as required by pynteny search). This can be achieved in bash like this:
But ideally would be integrated in a dedicated python function.
The text was updated successfully, but these errors were encountered: