-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathtool_version.txt
176 lines (176 loc) · 12.3 KB
/
tool_version.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
# packages in environment at /home/phanindra/env/SVpipeline:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
bcftools 1.9 h68d8f2e_9 bioconda
binutils_impl_linux-64 2.35.1 h193b22a_2 conda-forge
binutils_linux-64 2.35 h67ddf6f_30 conda-forge
bioconductor-biobase 2.46.0 r36h516909a_0 bioconda
bioconductor-biocgenerics 0.32.0 r36_0 bioconda
bioconductor-biocparallel 1.20.0 r36he1b5a44_0 bioconda
bioconductor-biostrings 2.54.0 r36h516909a_0 bioconda
bioconductor-delayedarray 0.12.0 r36h516909a_0 bioconda
bioconductor-genomeinfodb 1.22.0 r36_0 bioconda
bioconductor-genomeinfodbdata 1.2.2 r36_0 bioconda
bioconductor-genomicalignments 1.22.0 r36h516909a_0 bioconda
bioconductor-genomicranges 1.38.0 r36h516909a_0 bioconda
bioconductor-iranges 2.20.0 r36h516909a_0 bioconda
bioconductor-rhtslib 1.18.0 r36hdb70ac9_1 bioconda
bioconductor-rsamtools 2.2.0 r36he1b5a44_0 bioconda
bioconductor-rsvsim 1.26.0 r36_0 bioconda
bioconductor-s4vectors 0.24.0 r36h516909a_0 bioconda
bioconductor-shortread 1.44.0 r36he1b5a44_0 bioconda
bioconductor-summarizedexperiment 1.16.0 r36_0 bioconda
bioconductor-xvector 0.26.0 r36h516909a_0 bioconda
bioconductor-zlibbioc 1.32.0 r36h516909a_0 bioconda
biopython 1.78 py37h4abf009_1 conda-forge
boost 1.70.0 py37h9de70de_1 conda-forge
boost-cpp 1.70.0 ha2d47e9_1 conda-forge
breakdancer 1.4.5 hb3646a4_8 bioconda
brotlipy 0.7.0 py37hb5d75c8_1001 conda-forge
bwa 0.7.17 hed695b0_7 bioconda
bwidget 1.9.14 ha770c72_0 conda-forge
bzip2 1.0.8 h516909a_3 conda-forge
ca-certificates 2020.12.5 ha878542_0 conda-forge
cairo 1.16.0 h18b612c_1001 conda-forge
certifi 2020.12.5 py37h89c1867_1 conda-forge
cffi 1.14.5 py37h261ae71_0
chardet 4.0.0 py37h89c1867_1 conda-forge
coreutils 8.31 h516909a_0 conda-forge
cryptography 3.4.6 py37h5d9358c_0 conda-forge
curl 7.68.0 hf8cf82a_0 conda-forge
delly 0.8.3 h43566fd_0 bioconda
expat 2.2.10 he6710b0_2
fastp 0.20.1 h8b12597_0 bioconda
fastqc 0.11.9 0 bioconda
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
fontconfig 2.13.1 he4413a7_1000 conda-forge
freetype 2.10.4 h7ca028e_0 conda-forge
future 0.18.2 py37h89c1867_3 conda-forge
gatk 3.6 5 bioconda
gcc_impl_linux-64 7.5.0 habd7529_18 conda-forge
gcc_linux-64 7.5.0 h47867f9_30 conda-forge
gettext 0.19.8.1 h0b5b191_1005 conda-forge
gfortran_impl_linux-64 7.5.0 h56cb351_18 conda-forge
gfortran_linux-64 7.5.0 h78c8a43_30 conda-forge
giflib 5.1.7 h516909a_1 conda-forge
glib 2.66.7 h9c3ff4c_1 conda-forge
glib-tools 2.66.7 h9c3ff4c_1 conda-forge
gnuplot 5.0.3 4 bioconda
graphite2 1.3.13 h58526e2_1001 conda-forge
gsl 2.5 h294904e_1 conda-forge
gxx_impl_linux-64 7.5.0 hd0bb8aa_18 conda-forge
gxx_linux-64 7.5.0 h555fc39_30 conda-forge
harfbuzz 2.4.0 h37c48d4_1 conda-forge
htslib 1.9 ha228f0b_7 bioconda
icu 58.2 hf484d3e_1000 conda-forge
idna 2.10 pyh9f0ad1d_0 conda-forge
insilicoseq 1.5.2 pyh3252c3a_0 bioconda
java-jdk 8.0.92 1 bioconda
joblib 1.0.1 pyhd8ed1ab_0 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
kernel-headers_linux-64 2.6.32 h77966d4_13 conda-forge
krb5 1.16.4 h2fd8d38_0 conda-forge
ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge
libblas 3.9.0 8_openblas conda-forge
libcblas 3.9.0 8_openblas conda-forge
libcurl 7.68.0 hda55be3_0 conda-forge
libdeflate 1.0 h14c3975_1 bioconda
libedit 3.1.20191231 he28a2e2_2 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-devel_linux-64 7.5.0 hda03d7c_18 conda-forge
libgcc-ng 9.3.0 h2828fa1_18 conda-forge
libgd 2.2.5 h0d07dcb_1005 conda-forge
libgfortran-ng 7.5.0 h14aa051_18 conda-forge
libgfortran4 7.5.0 h14aa051_18 conda-forge
libglib 2.66.7 h3e27bee_1 conda-forge
libgomp 9.3.0 h2828fa1_18 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.9.0 8_openblas conda-forge
libopenblas 0.3.12 pthreads_hb3c22a3_1 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libssh2 1.9.0 hab1572f_5 conda-forge
libstdcxx-devel_linux-64 7.5.0 hb016644_18 conda-forge
libstdcxx-ng 9.3.0 h6de172a_18 conda-forge
libtiff 4.0.9 h648cc4a_1002 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libwebp 1.0.2 h99fbfcb_2 conda-forge
libxcb 1.13 h7f98852_1003 conda-forge
libxml2 2.9.9 h13577e0_2 conda-forge
make 4.3 hd18ef5c_1 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
numpy 1.18.1 py37h8960a57_1 conda-forge
openjdk 10.0.2 h14c3975_1015 conda-forge
openssl 1.1.1j h7f98852_0 conda-forge
pango 1.40.14 he7ab937_1005 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
perl 5.26.2 h14c3975_0
perl-exporter-tiny 1.002001 pl526_0 bioconda
perl-gd 2.71 pl526he860b03_0 bioconda
perl-gdgraph 1.54 pl526_0 bioconda
perl-gdgraph-histogram 1.1 pl526_3 bioconda
perl-gdtextutil 0.86 pl526h14c3975_5 bioconda
perl-list-moreutils 0.428 pl526_1 bioconda
perl-list-moreutils-xs 0.428 pl526_0 bioconda
perl-math-cdf 0.1 pl526h14c3975_5 bioconda
perl-statistics-descriptive 3.0702 pl526_0 bioconda
perl-xsloader 0.24 pl526_0 bioconda
picard 2.18.29 0 bioconda
pip 21.0.1 pyhd8ed1ab_0 conda-forge
pirs 2.0.2 haae0128_4 bioconda
pixman 0.38.0 h516909a_1003 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge
pysam 0.15.3 py37hda2845c_1 bioconda
pysocks 1.7.1 py37h89c1867_3 conda-forge
python 3.7.10 hdb3f193_0
python_abi 3.7 1_cp37m conda-forge
r-base 3.6.1 h8900bf8_2 conda-forge
r-bh 1.75.0_0 r36hc72bb7e_0 conda-forge
r-bitops 1.0_6 r36hcdcec82_1004 conda-forge
r-formatr 1.8 r36hc72bb7e_0 conda-forge
r-futile.logger 1.4.3 r36h6115d3f_1003 conda-forge
r-futile.options 1.0.1 r36h6115d3f_1002 conda-forge
r-hwriter 1.3.2 r36h6115d3f_1003 conda-forge
r-jpeg 0.1_8.1 r36hcdcec82_1 conda-forge
r-lambda.r 1.2.4 r36h6115d3f_1 conda-forge
r-lattice 0.20_41 r36hcfec24a_3 conda-forge
r-latticeextra 0.6_29 r36h6115d3f_1 conda-forge
r-matrix 1.3_2 r36he454529_0 conda-forge
r-matrixstats 0.58.0 r36hcfec24a_0 conda-forge
r-png 0.1_7 r36hcdcec82_1004 conda-forge
r-rcolorbrewer 1.1_2 r36h6115d3f_1003 conda-forge
r-rcurl 1.98_1.2 r36hcdcec82_0 conda-forge
r-snow 0.4_3 r36h6115d3f_1002 conda-forge
readline 8.0 he28a2e2_2 conda-forge
requests 2.25.1 pyhd3deb0d_0 conda-forge
samtools 1.7 1 bioconda
scipy 1.5.3 py37h8911b10_0 conda-forge
sed 4.8 he412f7d_0 conda-forge
setuptools 49.6.0 py37h89c1867_3 conda-forge
six 1.15.0 pyh9f0ad1d_0 conda-forge
soapaligner 2.21 0 bioconda
soapcoverage 2.7.7 0 bioconda
sqlite 3.33.0 h62c20be_0
sysroot_linux-64 2.12 h77966d4_13 conda-forge
tk 8.6.10 h21135ba_1 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
urllib3 1.26.3 pyhd8ed1ab_0 conda-forge
wheel 0.36.2 pyhd3deb0d_0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.0 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
zlib 1.2.11 h7b6447c_3