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README.html
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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.226">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<title>readme</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
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div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
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/* CSS for syntax highlighting */
pre > code.sourceCode { white-space: pre; position: relative; }
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<body class="fullcontent">
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<main class="content" id="quarto-document-content">
<section id="authorlistr" class="level3">
<h3 class="anchored" data-anchor-id="authorlistr">authorlistR</h3>
</section>
<section id="re-number-and-sort-affiliations-linked-to-author-lists" class="level1">
<h1>Re-number and sort affiliations linked to author lists</h1>
<!-- badges: start -->
<!-- badges: end -->
<p>This R script re-numbers affiliations of an author list.</p>
<section id="prerequisites" class="level2">
<h2 class="anchored" data-anchor-id="prerequisites">Prerequisites</h2>
<p>Following CRAN packages must be installed in order to run the scripts: <code>tidyverse</code>, <code>here</code>, <code>r2rtf</code></p>
<div class="sourceCode" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">install.packages</span>(<span class="fu">c</span>(<span class="st">"tidyverse"</span>, <span class="st">"here"</span>, <span class="st">"rtf"</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</section>
<section id="usage" class="level2">
<h2 class="anchored" data-anchor-id="usage">Usage</h2>
<ul>
<li>Copy/paste following information into the text files found under <code>/data</code></li>
</ul>
<ol type="A">
<li><code>author_names.txt</code>: List of author names in the desired order, succeeded with affiliations numbers. Authors should be separated by comma followed by a space or by a semicolon. Multiple affiliations must be separated by commas. Example:</li>
</ol>
<blockquote class="blockquote">
<pre><code>Clark1,2, H. Adams3, C. Baker8, E. Davis4,11, T. Evans5, O. Frank6, Y. Ghosh 10. K. Hills11, A. Irwin, J. Jones7, K. Klein1,12</code></pre>
</blockquote>
<ol start="2" type="A">
<li><code>author_affiliations</code>: List of affiliations, preceded with the number that is used in the author list (see A) to associate the authors with corresponding affiliations. Each affiliations needs to be a separated line.</li>
</ol>
<blockquote class="blockquote">
<pre><code>1Starlight University
2Quantum Institute of Technology
3Horizon University</code></pre>
</blockquote>
<ul>
<li><p>Run through the chunks of the notebook <code>authorlistR.qmd</code> in the folder <code>R</code></p></li>
<li><p>Formatted output (Rich-Text Format files) of the updated author and affiliation lists can be found in the folder <code>output</code>, which can be opened in Word and other text editors.</p>
<p><code>new_authorlist_utf8.rtf</code>:</p>
<blockquote class="blockquote">
<p>C.C. Clark<sup>1,2</sup>, H. Adams<sup>3</sup>, E. Davis<sup>4,5</sup>, BB. Baker<sup>1,5,6</sup>, Y. Ghosh<sup>7,8</sup>, T Evans<sup>9</sup>, F. Frank<sup>10</sup>, K. Hills<sup>5</sup>, A. Irwin<sup>2</sup>, J. Jones<sup>11</sup>, K. Klein<sup>1,3,6,12</sup></p>
</blockquote>
<p><code>new_authorlist_utf8.rtf</code>:</p>
<blockquote class="blockquote">
<p><sup>1</sup>Starlight University</p>
<p><sup>2</sup>Quantum Institute of Technology</p>
<p><sup>3</sup>Horizon University</p>
</blockquote></li>
</ul>
</section>
<section id="note" class="level2">
<h2 class="anchored" data-anchor-id="note">Note</h2>
<p>This code does not check the data you provide and may crash or output wrong data if formatting is not as expected. The author of this script will not accept any responsibility for rejected manuscripts:)</p>
</section>
<section id="contact" class="level2">
<h2 class="anchored" data-anchor-id="contact">Contact</h2>
<p>Bo Burla, Singapore Lipidomics Incubator, National University of Singapore (lsibjb @ nus.edu.sg)</p>
</section>
<section id="license" class="level2">
<h2 class="anchored" data-anchor-id="license">License</h2>
<p>This project is licensed under the MIT License - see the <a href="LICENSE.md">LICENSE.md</a> file for details</p>
</section>
</section>
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