NAMESPACE

# Generated by roxygen2: do not edit by hand

export(.write_siteRef)
export(addAnno)
export(annotateX)
export(annotates_snps)
export(betaBinomXI)
export(betaParam)
export(consensusXCI)
export(getGenicDP)
export(getXCIstate)
export(mart_genes)
export(plotQC)
export(readRNASNPs)
export(readVCF4)
export(readXCI)
export(readXVcf)
export(sample_clean)
export(xci_calls)
import(data.table)
import(methods)
import(stats)
importFrom(Biostrings,unstrsplit)
importFrom(IRanges,CharacterList)
importFrom(S4Vectors,unstrsplit)
importFrom(VariantAnnotation,ScanVcfParam)
importFrom(VariantAnnotation,alt)
importFrom(VariantAnnotation,geno)
importFrom(VariantAnnotation,readVcf)
importFrom(VariantAnnotation,ref)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(biomaRt,useMart)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(readxl,read_xlsx)
importFrom(seqminer,annotatePlain)
importFrom(seqminer,makeAnnotationParameter)
importFrom(tools,file_ext)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,globalVariables)
importFrom(utils,tail)
importFrom(utils,write.table)