Merge pull request #68 from STRIDES/dev/gh-action

dev/gh action

Author: mr8lu

.github/workflows/action.yml

@@ -0,0 +1,12 @@
+name: 'Check Links'
+on:
+  workflow_dispatch:
+  push:
+  pull_request:
+
+jobs:
+  link_check:
+    name: 'Link Check'
+    uses: STRIDES/NIHCloudLab/.github/workflows/check-links.yaml@main
+    with:
+      repo_link_ignore_list: ""

.github/workflows/check-links-self.yaml

@@ -0,0 +1,14 @@
+name: 'Lint Notebook'
+on:
+  push:
+  workflow_dispatch:
+permissions:
+  contents: write
+  id-token: write
+
+jobs:
+  lint:
+    name: 'Linting'
+    uses: STRIDES/NIHCloudLab/.github/workflows/notebook-lint.yaml@main
+    with:
+      directory: .

.github/workflows/check_links.yml

@@ -10,6 +10,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "af8ad165",
    "metadata": {},
    "source": [
     "## Overview\n",
@@ -18,6 +19,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "1855fc00",
    "metadata": {},
    "source": [
     "## Prerequisites\n",
@@ -26,6 +28,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "13e66dc9",
    "metadata": {},
    "source": [
     "## Learning Objectives\n",
@@ -35,13 +38,15 @@
   },
   {
    "cell_type": "markdown",
+   "id": "a3c61097",
    "metadata": {},
    "source": [
     "## Get Started"
    ]
   },
   {
    "cell_type": "markdown",
+   "id": "06e31b2a",
    "metadata": {},
    "source": [
     "### Install packages"
@@ -178,6 +183,7 @@
   },
   {
    "cell_type": "markdown",
+   "id": "d27edaa5",
    "metadata": {},
    "source": [
     "## Conclusions\n",
@@ -203,31 +209,7 @@
    ]
   }
  ],
- "metadata": {
-  "environment": {
-   "kernel": "python3",
-   "name": "common-cpu.m93",
-   "type": "gcloud",
-   "uri": "gcr.io/deeplearning-platform-release/base-cpu:m93"
-  },
-  "kernelspec": {
-   "display_name": "Python 3",
-   "language": "python",
-   "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.7.12"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }

.github/workflows/github-lint.yml

@@ -53,9 +53,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "8ec900bd",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "! mkdir GWAS"
@@ -65,9 +63,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "3c20d2c1-1f0a-441d-9b5e-4ed018ec01ed",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -79,9 +75,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "4d43ae73",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -93,9 +87,7 @@
   {
    "cell_type": "markdown",
    "id": "37567b92-71f1-4c7d-8cce-c08e82b25557",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "### Install dependencies"
    ]
@@ -155,9 +147,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "e91c7a01",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%%bash\n",
@@ -441,25 +431,7 @@
    "source": []
   }
  ],
- "metadata": {
-  "kernelspec": {
-   "display_name": "conda_tensorflow2_p310",
-   "language": "python",
-   "name": "conda_tensorflow2_p310"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.10.12"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }