From c85b1f72c314aa00aa2ee90c64b52f1ba7159451 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 10:24:32 +0100 Subject: [PATCH 1/4] build(deps-dev): bump semantic-release from 22.0.5 to 22.0.6 (#490) Bumps [semantic-release](https://github.com/semantic-release/semantic-release) from 22.0.5 to 22.0.6.
Release notes

Sourced from semantic-release's releases.

v22.0.6

22.0.6 (2023-10-31)

Bug Fixes

Commits

[![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=semantic-release&package-manager=npm_and_yarn&previous-version=22.0.5&new-version=22.0.6)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- package-lock.json | 52 +++++++++++++++++++++++------------------------ package.json | 2 +- 2 files changed, 26 insertions(+), 28 deletions(-) diff --git a/package-lock.json b/package-lock.json index b325c5a6b..0536c7e95 100644 --- a/package-lock.json +++ b/package-lock.json @@ -13,7 +13,7 @@ "@semantic-release/exec": "^6.0.3", "@semantic-release/git": "^10.0.1", "conventional-changelog-conventionalcommits": "^7.0.2", - "semantic-release": "^22.0.5" + "semantic-release": "^22.0.6" } }, "node_modules/@babel/code-frame": { @@ -1502,16 +1502,15 @@ } }, "node_modules/figures": { - "version": "5.0.0", - "resolved": "https://registry.npmjs.org/figures/-/figures-5.0.0.tgz", - "integrity": "sha512-ej8ksPF4x6e5wvK9yevct0UCXh8TTFlWGVLlgjZuoBH1HwjIfKE/IdL5mq89sFA7zELi1VhKpmtDnrs7zWyeyg==", + "version": "6.0.1", + "resolved": "https://registry.npmjs.org/figures/-/figures-6.0.1.tgz", + "integrity": "sha512-0oY/olScYD4IhQ8u//gCPA4F3mlTn2dacYmiDm/mbDQvpmLjV4uH+zhsQ5IyXRyvqkvtUkXkNdGvg5OFJTCsuQ==", "dev": true, "dependencies": { - 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"figures": "^5.0.0", + "figures": "^6.0.0", "find-versions": "^5.1.0", "get-stream": "^6.0.0", "git-log-parser": "^1.2.0", diff --git a/package.json b/package.json index b63671161..e34f4236a 100644 --- a/package.json +++ b/package.json @@ -9,6 +9,6 @@ "@semantic-release/exec": "^6.0.3", "@semantic-release/git": "^10.0.1", "conventional-changelog-conventionalcommits": "^7.0.2", - "semantic-release": "^22.0.5" + "semantic-release": "^22.0.6" } } From e87cb0096e9e24fba8e4526c0fe2f712cda725a6 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 10:28:46 +0100 Subject: [PATCH 2/4] chore(deps): bump levenshtein from 0.21.1 to 0.23.0 (#486) Bumps [levenshtein](https://github.com/maxbachmann/Levenshtein) from 0.21.1 to 0.23.0.
Release notes

Sourced from levenshtein's releases.

Release 0.23.0

Changed

  • added keyword argument pad to Hamming distance. This controls whether sequences of different length should be padded or lead to a ValueError
  • upgrade to Cython==3.0.3

Release 0.22.0

Changed

  • add support for Python 3.12
  • drop support for Python 3.6

Added

  • add wheels for windows arm64
Changelog

Sourced from levenshtein's changelog.

v0.23.0

Changed

  • added keyword argument pad to Hamming distance. This controls whether sequences of different length should be padded or lead to a ValueError
  • upgrade to Cython==3.0.3

v0.22.0

Changed

  • add support for Python 3.12
  • drop support for Python 3.6

Added

  • add wheels for windows arm64
Commits

[![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=levenshtein&package-manager=pip&previous-version=0.21.1&new-version=0.23.0)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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[tool.poetry.group.dev.dependencies] pytest = "^7.2.1" From 20df3c4d66d3cb1f8f9654d6cd76908c863510ba Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 10:41:59 +0100 Subject: [PATCH 3/4] build(deps): bump scikit-image from 0.21.0 to 0.22.0 (#485) Bumps [scikit-image](https://github.com/scikit-image/scikit-image) from 0.21.0 to 0.22.0.
Release notes

Sourced from scikit-image's releases.

v0.22.0

No release notes provided.

v0.22.0rc1

scikit-image 0.22.0rc1

We're happy to announce the release of scikit-image 0.22.0rc1!

New Features

  • Add new image sequence skimage.data.palisades_of_vogt showing in-vivo tissue of the palisades of Vogt (#6858).

Performance

  • Add lazy loading to the skimage.feature module (#6983).
  • Add lazy loading to the skimage.graph submodule (#6985).
  • Add lazy loading to the skimage.measure submodule (#6999).
  • Add lazy loading to the skimage.transform submodule (#7009).
  • Add lazy loading to the skimage.restoration submodule (#7021).
  • Add lazy loading to the skimage.registration submodule (#7032).
  • Avoid unnecessary padding in skimage.measure.block_resize (#7092).

Bug Fixes

  • Add num_pixels and coords_scaled to regionprops_table (#7039).
  • Update video.rst (#7076).
  • For uniform intensity images, return intensity value as threshold (#7098).
  • Fix color conversion error (#7116).
  • Make phase_cross_correlation return ndarray when disambiguate=True (#7112).
  • Allow extra_properties of non equal lengths to be passed correctly to regionprops_table (#7136).

API Changes

  • Make PyWavelets an optional dependency which is only required for skimage.restoration.denoise_wavelet and skimage.restoration.estimate_sigma (#7156).
  • Remove deprecated skimage.filters.inverse. Use skimage.filters.filter_inverse instead (#7161).
  • Remove deprecated function skimage.filters.ridges.compute_hessian_eigenvalues. Use skimage.feature.hessian_matrix_eigvals on the results of skimage.feature.hessian_matrix instead (#7162).
  • Remove deprecated automatic detection of the color channel in skimage.filters.gaussian. channel_axis=None now indicates a grayscale image. Set the color channel with channel_axis=-1 explicitly (#7164).
  • Change number of returned arguments in skimage.registration.phase_cross_correlation. The function now always returns the 3 arguments shift, error, and phasediff (#7166).
  • Deprecate return_error in skimage.registration.phase_cross_correlation (#7174).

Maintenance

  • Don't test numpy prerelease on azure (#6996).
  • Drop Python 3.8 support per SPEC 0 (#6990).
  • Upper pin imageio (#7002).
  • Update core dependencies per SPEC0 (#7005).
  • meson: allow proper selection of NumPy, Pythran in cross builds (#7003).
  • Unpin imageio and add warningfilter (#7006).
  • Update to latest attach-next-milestone action (#7014).
  • Avoid deprecated auto-removal of overlapping axes in thresholding example (#7026).

... (truncated)

Commits

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"pooch (>=1.6.0)", "pytest (>=7.0)", "pytest-cov (>=2.11.0)", "pytest-faulthandler", "pytest-localserver"] [[package]] name = "scikit-learn" @@ -3753,4 +3714,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "1bb75c379f8608bc9a249d2d3d3a8dec18c71213249dc5f62414249a6a4696ff" +content-hash = "d38fa4567e85b769faaeb702519e9394b31d525f0dc6ff2866385fe9fbb54c7e" diff --git a/pyproject.toml b/pyproject.toml index 17ed4524b..6346900af 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,7 @@ pillow = ">=9.5,<11.0" scikit-learn = "^1.2.0" seaborn = "^0.12.2" openpyxl = "^3.1.2" -scikit-image = "^0.21.0" +scikit-image = ">=0.21,<0.23" levenshtein = ">=0.21.1,<0.24.0" [tool.poetry.group.dev.dependencies] From 50efd15c319846af80848ba2e815d981c3abac2a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 10:48:27 +0100 Subject: [PATCH 4/4] build(deps-dev): bump mkdocs-literate-nav from 0.6.0 to 0.6.1 (#487) Bumps [mkdocs-literate-nav](https://github.com/oprypin/mkdocs-literate-nav) from 0.6.0 to 0.6.1.
Release notes

Sourced from mkdocs-literate-nav's releases.

v0.6.1

Commits

[![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=mkdocs-literate-nav&package-manager=pip&previous-version=0.6.0&new-version=0.6.1)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index 062c6c4ba..524e22d09 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1867,13 +1867,13 @@ test = ["coverage[toml]", "pymdown-extensions", "pytest", "pytest-cov"] [[package]] name = "mkdocs-literate-nav" -version = "0.6.0" +version = "0.6.1" description = "MkDocs plugin to specify the navigation in Markdown instead of YAML" optional = false python-versions = ">=3.7" files = [ - {file = "mkdocs_literate_nav-0.6.0-py3-none-any.whl", hash = "sha256:8c1b84714e5974da5e44e011ec0069275ae7647270c13a679662cf6ffce675a4"}, - {file = "mkdocs_literate_nav-0.6.0.tar.gz", hash = "sha256:81ccbea18163ae8e10bd0bd39237fe70c32a1f2dff6c170779f5d52dd98a0470"}, + {file = "mkdocs_literate_nav-0.6.1-py3-none-any.whl", hash = "sha256:e70bdc4a07050d32da79c0b697bd88e9a104cf3294282e9cb20eec94c6b0f401"}, + {file = "mkdocs_literate_nav-0.6.1.tar.gz", hash = "sha256:78a7ab6d878371728acb0cdc6235c9b0ffc6e83c997b037f4a5c6ff7cef7d759"}, ] [package.dependencies]