_pkgdown.yml

url: http://www.schlosslab.org/schtools
destination: docs
development:
  mode: auto
template:
  bootstrap: 5
articles:
- title: Vignettes
  navbar: Vignettes
  contents:
  - introduction
  - articles/logo
authors:
    Kelly Sovacool:
        href: "https://github.com/kelly-sovacool"
    Nick Lesniak:
        href: "https://github.com/NLesniak"
    Patrick Schloss:
        href: "https://github.com/pschloss"
reference:
- title:
  contents:
  - schtools
- title: Microbiome
  desc: >
    Handle microbiome-related data.
  contents:
  - starts_with('read_')
  - starts_with('parse_')
  - calc_relabun
  - pool_taxon_counts
- title: R Markdown
  desc: >
    Format publication-quality documents.
  contents:
  - set_knitr_opts
  - inline_hook
  - paste_oxford_list
  - format_number
- title: ggplot2
  desc: >
    Make your plots even prettier.
  contents:
  - starts_with("theme_")
- title: Snakemake
  desc: >
    Helpers for running R scripts from Snakemake.
  contents:
    - contains('snakemake')
    - get_wildcards_tbl
- title: Everything else
  desc: >
    Useful tools for miscellaneous tasks.
  contents:
  - close_enough
  - is_nearly_whole
  - is_nondesc
  - load_deps