From 4761d29adebc7d73ba41eb65f728b2901ced0d99 Mon Sep 17 00:00:00 2001 From: Shujia Huang Date: Wed, 11 Sep 2024 11:44:20 +0800 Subject: [PATCH] small modify --- src/basetype_caller.cpp | 4 ++-- src/basetype_utils.h | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/src/basetype_caller.cpp b/src/basetype_caller.cpp index c9de3e9..dd7e387 100644 --- a/src/basetype_caller.cpp +++ b/src/basetype_caller.cpp @@ -88,7 +88,7 @@ void BaseTypeRunner::set_arguments(int cmd_argc, char *cmd_argv[]) { // Output the commandline options std::cout << - "[INFO] BaseVar commandline and arguments:\n" + "[INFO] BaseVar arguments:\n" "basevar basetype -R " + _args->reference + " \\ \n" + (_args->input_bf.empty() ? "" : " -I " + ngslib::join(_args->input_bf, " -I ") + " \\ \n") + (_args->in_bamfilelist.empty() ? "" : " -L " + _args->in_bamfilelist + " \\ \n") << @@ -1274,4 +1274,4 @@ IndelTuple __base_depth_and_indel(const std::vector &align_bases) { } indel_string = (!indels.empty()) ? ngslib::join(indels, ",") : "."; return std::make_tuple(indel_string, base_depth); -} \ No newline at end of file +} diff --git a/src/basetype_utils.h b/src/basetype_utils.h index 05e91d1..02232ba 100644 --- a/src/basetype_utils.h +++ b/src/basetype_utils.h @@ -26,7 +26,7 @@ static const std::string __BASETYPE_USAGE = " -m, --min-af=float Setting prior precision of MAF and skip uneffective caller positions.\n" " Usually you can set it to be min(0.001, 100/x), x is the number of input\n" - " BAM files.[min(0.001, 100/x)]. Probably you don't need to take care about\n" + " BAM files.[min(0.001, 100/x)]. In generally, you don't have to worry about\n" " this parameter.\n" " -q, --mapq=INT Only include reads with mapping quality >= INT. [10]\n" " -B, --batch-count=INT INT simples per batchfile. [200]\n" @@ -103,4 +103,4 @@ std::string cvg_header_define(const std::vector &group_info, const void merge_file_by_line(const std::vector & infiles, const std::string &outfile, std::string header, bool is_remove_tempfile=false); -#endif \ No newline at end of file +#endif