From 90788e55876c85d943632f1a57ef487e49a263cf Mon Sep 17 00:00:00 2001
From: software <software@easybuild-el8.cloud.in.bmrc.ox.ac.uk>
Date: Mon, 6 Jan 2025 11:21:04 +0000
Subject: [PATCH] adding easyconfigs: BEDOPS-2.4.41-foss-2023a.eb

---
 .../b/BEDOPS/BEDOPS-2.4.41-foss-2023a.eb      | 41 +++++++++++++++++++
 1 file changed, 41 insertions(+)
 create mode 100644 easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.41-foss-2023a.eb

diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.41-foss-2023a.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.41-foss-2023a.eb
new file mode 100644
index 00000000000..0162f62c877
--- /dev/null
+++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.41-foss-2023a.eb
@@ -0,0 +1,41 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# updated: Denis Kristak (INUITS)
+# Update: Petr Král (INUITS)
+
+easyblock = 'MakeCp'
+
+name = 'BEDOPS'
+version = '2.4.41'
+
+homepage = 'http://%(namelower)s.readthedocs.io/en/latest/index.html'
+description = """BEDOPS is an open-source command-line toolkit that performs highly efficient and
+ scalable Boolean and other set operations, statistical calculations, archiving, conversion and
+ other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for
+ distributing whole-genome analyses across a computational cluster."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/%(namelower)s/%(namelower)s/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['3b868c820d59dd38372417efc31e9be3fbdca8cf0a6b39f13fb2b822607d6194']
+
+# else build of jansson library fails with: 'configure: error: C compiler cannot create executables'
+prebuildopts = 'unset LIBS && '
+# builds all variants and copies executables to bin directory
+buildopts = ' all && make install'
+# actually used variant is linked to via symlinks
+keepsymlinks = True
+
+files_to_copy = ['bin']
+
+sanity_check_paths = {
+    'files': [
+        'bin/%s' % x for x in ['bam2bed', '%(namelower)s', 'convert2bed', 'unstarch']
+    ],
+    'dirs': [],
+}
+
+sanity_check_commands = ['%(namelower)s --help']
+
+moduleclass = 'bio'