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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<title>SimpleITK - Home</title>
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<a class="dropdown-item pl-2 text-secondary" href="doxygen/v2_4/html/" target="_blank">Version 2.4</a>
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<a class="dropdown-item pl-2 text-secondary" href="doxygen/v2_2/html/" target="_blank">Version 2.2</a>
<a class="dropdown-item pl-2 text-secondary" href="doxygen/v2_1/html/" target="_blank">Version 2.1</a>
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<p class="font-weight-bold mb-0 bold-statement">A simplified path to Insight.</p>
<p class="small text-white mb-3 mb-md-5 supporting-statement">Open-source multi-dimensional image analysis in Python, R, Java, C#, Lua, Ruby, TCL and C++. Developed by the Insight Toolkit community for the biomedical sciences and beyond.</p>
<div class="">
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<a role="button" class="pb-2 btn btn-brand btn-sm font-weight-bold px-5 py-2 index-button" href="https://simpleitk.readthedocs.io/en/master/gettingStarted.html" target="_blank">Getting Started</a>
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<!-- Marketing messaging and featurettes
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<!-- START THE FEATURETTES -->
<div class="row featurette">
<div class="col-md-6 px-5 pb-5 my-md-auto">
<p class=""><span class="font-weight-bold text-brand">Images that are considered spatial objects</span> and not arrays of pixels. Computations are performed in physical space, 2D or 3D.</p>
</div>
<div class="col-md-6">
<img class="example-images" src="images/homepage/imageAsSpatialObjectConcept.png" alt="Image as a spatial object">
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<div class="row featurette">
<div class="col-md-6 order-md-2 px-5 pb-5 my-md-auto">
<p class=""><span class="font-weight-bold text-brand">Registration framework for fast alignment</span> of 2D and 3D intra and inter-modality images using rigid or deformable transformations.</p>
</div>
<div class="col-md-6 order-md-1">
<video class="card-img" playsinline="" autoplay="" muted="" loop=""><source src="images/homepage/registration.mp4" type="video/mp4" alt="Inter-Modality"></video>
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<p class=""><span class="font-weight-bold text-brand">An abundance of filters for image segmentation workflows,</span> from classics such as Otsu thresholding to level sets and watersheds.</p>
</div>
<div class="col-md-6">
<img class="example-images" src="images/homepage/spores.png" alt="Spores">
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<div class="row featurette">
<div class="col-md-6 order-md-2 px-5 pb-5 my-md-auto">
<p class=""><span class="font-weight-bold text-brand">Tools for evaluating segmentation results</span> (Hausdorff distance, Jaccard and Dice values, surface distances etc.) and analyze the segmented shape characteristics (oriented bounding box, principal moments, perimeter, elongation, Feret diameter etc.).</p>
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<div class="col-md-6 order-md-1">
<img class="segmentation-images" src="images/homepage/segmentation-1.png" alt="Segmentation">
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<p class=""><span class="font-weight-bold text-brand">Image file I/O that support more than 20 image file formats</span> (jpg, png, DICOM, TIFF, etc.) with easy conversion between formats.</p>
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<script src="https://gist.github.com/blowekamp/0aa369093459838c66e9cae4fd6736e9.js"></script>
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<p class=""><span class="font-weight-bold text-brand">Readily integrated into parallel processing frameworks</span> on clusters or on desktops via process and thread based parallelization.</p>
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<img class="example-images" src="images/homepage/parallel-processing.gif" alt="Parallel processing">
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<li><a class="about-link" href="https://www.nlm.nih.gov" target="_blank"><img alt="NLM" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/nlm.jpg"></a></li>
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<li><a class="about-link" href="https://www.niaid.nih.gov" target="_blank"><img alt="NIAID" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/niaid.jpg"></a></li>
<li><a class="about-link" href="https://uiowa.edu" target="_blank"><img alt="University of Iowa" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/iowa.png"></a></li>
<li><a class="about-link" href="https://www.kitware.com" target="_blank"><img alt="Kitware" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/kitware_logo.jpg"></a></li>
<li><a class="about-link" href="https://www.mayoclinic.org" target="_blank"><img alt="Mayo Clinic" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/mayoclinic.png"></a></li>
<li><a class="about-link" href="https://www.monash.edu" target="_blank"><img alt="Monash University" class="logo-img-sm px-2 px-sm-4 px-md-5 my-md-3" src="images/partner-logos/monash_university.png"></a></li>
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<li class="list-inline-item mr-4"><a class="text-white-50" href="https://stackoverflow.com/questions/tagged/simpleitk" target="_blank" data-toggle="tooltip" data-placement="bottom" title="Stack Overflow SimpleITK" aria-label="Stack Overflow SimpleITK"><i class="fab fa-stack-overflow fa-2x" alt="Stack Overflow SimpleITK"></i></a></li>
<li class="list-inline-item mr-4"><a class="text-white-50" href="https://github.com/SimpleITK/SimpleITK" target="_blank" data-toggle="tooltip" data-placement="bottom" title="Github SimpleITK" aria-label="Github SimpleITK"><i class="fab fa-github fa-2x" alt="Github SimpleITK"></i></a></li>
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<h6 class="mb-3 font-weight-bold text-white">Related Sites</h6>
<ul class="list-unstyled">
<li class=""><a class="small text-white-50" href="https://www.insightsoftwareconsortium.org" target="_blank">Insight Software Consortium</a></li>
<li class=""><a class="small text-white-50" href="https://itk.org" target="_blank">The Insight Toolkit</a></li>
<li class=""><a class="small text-white-50" href="https://numfocus.org" target="_blank">NumFOCUS</a></li>
<li class=""><a class="small text-white-50" href="https://www.niaid.nih.gov/" target="_blank">National Institute of Allergy & Infectious Diseases</a></li>
<li class=""><a class="small text-white-50" href="https://bioinformatics.niaid.nih.gov/" target="_blank">bioinformatics @NIAID</a></li>
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